xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 4fe895cd02347dacd17b296e50adb20a03bf70f2)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
66dfbe8321SBarry Smith   PetscErrorCode ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay #define CHUNKSIZE  10
77a30f8f8cSSatish Balay 
78a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
79a30f8f8cSSatish Balay { \
80a30f8f8cSSatish Balay  \
81a30f8f8cSSatish Balay     brow = row/bs;  \
82a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
83a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
84a30f8f8cSSatish Balay       bcol = col/bs; \
85a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
86a30f8f8cSSatish Balay       low = 0; high = nrow; \
87a30f8f8cSSatish Balay       while (high-low > 3) { \
88a30f8f8cSSatish Balay         t = (low+high)/2; \
89a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
90a30f8f8cSSatish Balay         else              low  = t; \
91a30f8f8cSSatish Balay       } \
92a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
93a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
94a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
95a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
96a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
97a30f8f8cSSatish Balay           else                    *bap  = value;  \
98a30f8f8cSSatish Balay           goto a_noinsert; \
99a30f8f8cSSatish Balay         } \
100a30f8f8cSSatish Balay       } \
101a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
102085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
103ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \
104a30f8f8cSSatish Balay       N = nrow++ - 1;  \
105a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
106a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
107a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
108a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
111a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
112a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
113a30f8f8cSSatish Balay       a_noinsert:; \
114a30f8f8cSSatish Balay     ailen[brow] = nrow; \
115a30f8f8cSSatish Balay }
116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
117a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
118a30f8f8cSSatish Balay { \
119a30f8f8cSSatish Balay     brow = row/bs;  \
120a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
121a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
122a30f8f8cSSatish Balay       bcol = col/bs; \
123a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
124a30f8f8cSSatish Balay       low = 0; high = nrow; \
125a30f8f8cSSatish Balay       while (high-low > 3) { \
126a30f8f8cSSatish Balay         t = (low+high)/2; \
127a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
128a30f8f8cSSatish Balay         else              low  = t; \
129a30f8f8cSSatish Balay       } \
130a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
131a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
132a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
133a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
134a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
135a30f8f8cSSatish Balay           else                    *bap  = value;  \
136a30f8f8cSSatish Balay           goto b_noinsert; \
137a30f8f8cSSatish Balay         } \
138a30f8f8cSSatish Balay       } \
139a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
140085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
141ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \
142a30f8f8cSSatish Balay       N = nrow++ - 1;  \
143a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
144a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
145a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
146a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
149a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
150a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
151a30f8f8cSSatish Balay       b_noinsert:; \
152a30f8f8cSSatish Balay     bilen[brow] = nrow; \
153a30f8f8cSSatish Balay }
154a30f8f8cSSatish Balay #endif
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1574a2ae208SSatish Balay #undef __FUNCT__
1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
160a30f8f8cSSatish Balay {
161a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
162dfbe8321SBarry Smith   PetscErrorCode ierr;
1631302d50aSBarry Smith   PetscInt       i,N = m*n;
164a30f8f8cSSatish Balay   MatScalar      *vsingle;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
168a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
16982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
170a30f8f8cSSatish Balay     b->setvalueslen  = N;
171a30f8f8cSSatish Balay   }
172a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
173a30f8f8cSSatish Balay 
174a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
175a30f8f8cSSatish Balay     vsingle[i] = v[i];
176a30f8f8cSSatish Balay   }
177a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
179a30f8f8cSSatish Balay }
180a30f8f8cSSatish Balay 
1814a2ae208SSatish Balay #undef __FUNCT__
1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
184a30f8f8cSSatish Balay {
185a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
186dfbe8321SBarry Smith   PetscErrorCode ierr;
1871302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
188a30f8f8cSSatish Balay   MatScalar      *vsingle;
189a30f8f8cSSatish Balay 
190a30f8f8cSSatish Balay   PetscFunctionBegin;
191a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
192a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
19382502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
194a30f8f8cSSatish Balay     b->setvalueslen  = N;
195a30f8f8cSSatish Balay   }
196a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
197a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
198a30f8f8cSSatish Balay     vsingle[i] = v[i];
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
201a30f8f8cSSatish Balay   PetscFunctionReturn(0);
202a30f8f8cSSatish Balay }
203a30f8f8cSSatish Balay #endif
204a30f8f8cSSatish Balay 
205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
206a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
207a30f8f8cSSatish Balay */
2084a2ae208SSatish Balay #undef __FUNCT__
209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
211a30f8f8cSSatish Balay {
212a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
213a30f8f8cSSatish Balay   MatScalar      value;
214b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
215dfbe8321SBarry Smith   PetscErrorCode ierr;
2161302d50aSBarry Smith   PetscInt       i,j,row,col;
2171302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
2181302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
219521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   /* Some Variables required in the macro */
222a30f8f8cSSatish Balay   Mat            A = baij->A;
223a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2241302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
225a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
226a30f8f8cSSatish Balay 
227a30f8f8cSSatish Balay   Mat            B = baij->B;
228a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2291302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
230a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
231a30f8f8cSSatish Balay 
2321302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2331302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
234a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
235a30f8f8cSSatish Balay 
236a30f8f8cSSatish Balay   /* for stash */
2371302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
238f65c83cfSHong Zhang   MatScalar     *v_loc=0;
239a30f8f8cSSatish Balay 
240a30f8f8cSSatish Balay   PetscFunctionBegin;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   if(!baij->donotstash){
2431302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
24482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
245a30f8f8cSSatish Balay   }
246a30f8f8cSSatish Balay 
247a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
248a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
25077431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
251a30f8f8cSSatish Balay #endif
252a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
253a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
254a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
255f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
256a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
257a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
258a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
259a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
260a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
261a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
262a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
263a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
26577431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
266a30f8f8cSSatish Balay #endif
267a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
268a30f8f8cSSatish Balay           if (mat->was_assembled) {
269a30f8f8cSSatish Balay             if (!baij->colmap) {
270653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
271a30f8f8cSSatish Balay             }
272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
273a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
27471730473SSatish Balay             col  = col - 1;
275a30f8f8cSSatish Balay #else
27671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
277a30f8f8cSSatish Balay #endif
278a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
279a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
280a30f8f8cSSatish Balay               col =  in[j];
281a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
282a30f8f8cSSatish Balay               B = baij->B;
283a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
284a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
285a30f8f8cSSatish Balay               ba=b->a;
28671730473SSatish Balay             } else col += in[j]%bs;
287a30f8f8cSSatish Balay           } else col = in[j];
288a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
289a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
290a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
291a30f8f8cSSatish Balay         }
292a30f8f8cSSatish Balay       }
293a30f8f8cSSatish Balay     } else {  /* off processor entry */
294a30f8f8cSSatish Balay       if (!baij->donotstash) {
295a30f8f8cSSatish Balay         n_loc = 0;
296a30f8f8cSSatish Balay         for (j=0; j<n; j++){
297f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
298a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
299a30f8f8cSSatish Balay           if (roworiented) {
300a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
301a30f8f8cSSatish Balay           } else {
302a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
303a30f8f8cSSatish Balay           }
304a30f8f8cSSatish Balay           n_loc++;
305a30f8f8cSSatish Balay         }
306a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
307a30f8f8cSSatish Balay       }
308a30f8f8cSSatish Balay     }
309a30f8f8cSSatish Balay   }
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   if(!baij->donotstash){
312a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
313a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
314a30f8f8cSSatish Balay   }
315a30f8f8cSSatish Balay   PetscFunctionReturn(0);
316a30f8f8cSSatish Balay }
317a30f8f8cSSatish Balay 
3184a2ae208SSatish Balay #undef __FUNCT__
319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
321a30f8f8cSSatish Balay {
3220880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
323f15d580aSBarry Smith   const MatScalar *value;
324f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3250880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
326dfbe8321SBarry Smith   PetscErrorCode  ierr;
3271302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
3281302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
329521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
3300880e062SHong Zhang 
331a30f8f8cSSatish Balay   PetscFunctionBegin;
3320880e062SHong Zhang   if(!barray) {
3330880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3340880e062SHong Zhang     baij->barray = barray;
3350880e062SHong Zhang   }
3360880e062SHong Zhang 
3370880e062SHong Zhang   if (roworiented) {
3380880e062SHong Zhang     stepval = (n-1)*bs;
3390880e062SHong Zhang   } else {
3400880e062SHong Zhang     stepval = (m-1)*bs;
3410880e062SHong Zhang   }
3420880e062SHong Zhang   for (i=0; i<m; i++) {
3430880e062SHong Zhang     if (im[i] < 0) continue;
3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
34577431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3460880e062SHong Zhang #endif
3470880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3480880e062SHong Zhang       row = im[i] - rstart;
3490880e062SHong Zhang       for (j=0; j<n; j++) {
3500880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3510880e062SHong Zhang         if ((roworiented) && (n == 1)) {
352f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3530880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
354f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3550880e062SHong Zhang         } else { /* Here a copy is required */
3560880e062SHong Zhang           if (roworiented) {
3570880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3580880e062SHong Zhang           } else {
3590880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3600880e062SHong Zhang           }
3610880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3620880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3630880e062SHong Zhang               *barray++  = *value++;
3640880e062SHong Zhang             }
3650880e062SHong Zhang           }
3660880e062SHong Zhang           barray -=bs2;
3670880e062SHong Zhang         }
3680880e062SHong Zhang 
3690880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3700880e062SHong Zhang           col  = in[j] - cstart;
3710880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3720880e062SHong Zhang         }
3730880e062SHong Zhang         else if (in[j] < 0) continue;
3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
37577431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3760880e062SHong Zhang #endif
3770880e062SHong Zhang         else {
3780880e062SHong Zhang           if (mat->was_assembled) {
3790880e062SHong Zhang             if (!baij->colmap) {
380653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3810880e062SHong Zhang             }
3820880e062SHong Zhang 
3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3851302d50aSBarry Smith             { PetscInt data;
3860880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3870880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3880880e062SHong Zhang             }
3890880e062SHong Zhang #else
3900880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3910880e062SHong Zhang #endif
3920880e062SHong Zhang #endif
3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3940880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3950880e062SHong Zhang             col  = (col - 1)/bs;
3960880e062SHong Zhang #else
3970880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3980880e062SHong Zhang #endif
3990880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4000880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4010880e062SHong Zhang               col =  in[j];
4020880e062SHong Zhang             }
4030880e062SHong Zhang           }
4040880e062SHong Zhang           else col = in[j];
405e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4060880e062SHong Zhang         }
4070880e062SHong Zhang       }
4080880e062SHong Zhang     } else {
4090880e062SHong Zhang       if (!baij->donotstash) {
4100880e062SHong Zhang         if (roworiented) {
4110880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4120880e062SHong Zhang         } else {
4130880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4140880e062SHong Zhang         }
4150880e062SHong Zhang       }
4160880e062SHong Zhang     }
4170880e062SHong Zhang   }
4180880e062SHong Zhang   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
424a30f8f8cSSatish Balay {
425f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4266849ba73SBarry Smith   PetscErrorCode ierr;
427521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
4281302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
429a30f8f8cSSatish Balay 
430a30f8f8cSSatish Balay   PetscFunctionBegin;
431a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43277431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
43377431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
434a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
435a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
436a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
43777431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
43877431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
439a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
440a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
441c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
442a30f8f8cSSatish Balay         } else {
443a30f8f8cSSatish Balay           if (!baij->colmap) {
444653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
445a30f8f8cSSatish Balay           }
446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
447a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
448a30f8f8cSSatish Balay           data --;
449a30f8f8cSSatish Balay #else
450a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
451a30f8f8cSSatish Balay #endif
452a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
453a30f8f8cSSatish Balay           else {
454a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
455e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
456a30f8f8cSSatish Balay           }
457a30f8f8cSSatish Balay         }
458a30f8f8cSSatish Balay       }
459a30f8f8cSSatish Balay     } else {
46029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
461a30f8f8cSSatish Balay     }
462a30f8f8cSSatish Balay   }
463a30f8f8cSSatish Balay  PetscFunctionReturn(0);
464a30f8f8cSSatish Balay }
465a30f8f8cSSatish Balay 
4664a2ae208SSatish Balay #undef __FUNCT__
4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
469a30f8f8cSSatish Balay {
470a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
471dfbe8321SBarry Smith   PetscErrorCode ierr;
472a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
473a30f8f8cSSatish Balay 
474a30f8f8cSSatish Balay   PetscFunctionBegin;
475a30f8f8cSSatish Balay   if (baij->size == 1) {
476a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
477a30f8f8cSSatish Balay   } else {
478a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
479f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
480a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
481a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
482a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
483a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
484d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
485a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
486a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4870b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4880b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4890b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4900b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
4910b8dc8d2SHong Zhang       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstart,nz;
4920b8dc8d2SHong Zhang       PetscInt     brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs;
4930b8dc8d2SHong Zhang       MatScalar    *v;
4940b8dc8d2SHong Zhang 
4950b8dc8d2SHong Zhang       ierr  = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
4960b8dc8d2SHong Zhang       rsum2 = rsum + mat->N;
4970b8dc8d2SHong Zhang       ierr  = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
4980b8dc8d2SHong Zhang       /* Amat */
4990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5020b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5050b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5060b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5070b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5090b8dc8d2SHong Zhang               /* non-diagonal block */
5100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5110b8dc8d2SHong Zhang             }
5120b8dc8d2SHong Zhang           }
5130b8dc8d2SHong Zhang         }
5140b8dc8d2SHong Zhang       }
5150b8dc8d2SHong Zhang       /* Bmat */
5160b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5170b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5180b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5190b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5200b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5210b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5220b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5230b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5240b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5250b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5260b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5270b8dc8d2SHong Zhang             }
5280b8dc8d2SHong Zhang           }
5290b8dc8d2SHong Zhang         }
5300b8dc8d2SHong Zhang       }
5310b8dc8d2SHong Zhang       ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5320b8dc8d2SHong Zhang       *norm = 0.0;
5330b8dc8d2SHong Zhang       for (col=0; col<mat->N; col++) {
5340b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5350b8dc8d2SHong Zhang       }
5360b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
537a30f8f8cSSatish Balay     } else {
53829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
539a30f8f8cSSatish Balay     }
540a30f8f8cSSatish Balay   }
541a30f8f8cSSatish Balay   PetscFunctionReturn(0);
542a30f8f8cSSatish Balay }
543a30f8f8cSSatish Balay 
5444a2ae208SSatish Balay #undef __FUNCT__
5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
547a30f8f8cSSatish Balay {
548a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
549dfbe8321SBarry Smith   PetscErrorCode ierr;
5501302d50aSBarry Smith   PetscInt       nstash,reallocs;
551a30f8f8cSSatish Balay   InsertMode     addv;
552a30f8f8cSSatish Balay 
553a30f8f8cSSatish Balay   PetscFunctionBegin;
554a30f8f8cSSatish Balay   if (baij->donotstash) {
555a30f8f8cSSatish Balay     PetscFunctionReturn(0);
556a30f8f8cSSatish Balay   }
557a30f8f8cSSatish Balay 
558a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
559a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
560a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
562a30f8f8cSSatish Balay   }
563a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
566a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
56863ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
569a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
57063ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
571a30f8f8cSSatish Balay   PetscFunctionReturn(0);
572a30f8f8cSSatish Balay }
573a30f8f8cSSatish Balay 
5744a2ae208SSatish Balay #undef __FUNCT__
5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
577a30f8f8cSSatish Balay {
578a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
579a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
580a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
5816849ba73SBarry Smith   PetscErrorCode ierr;
58213f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5831302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
58413f74950SBarry Smith   PetscMPIInt    n;
585a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
586a30f8f8cSSatish Balay   MatScalar      *val;
587a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   PetscFunctionBegin;
590a30f8f8cSSatish Balay 
591a30f8f8cSSatish Balay   if (!baij->donotstash) {
592a30f8f8cSSatish Balay     while (1) {
593a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
594a30f8f8cSSatish Balay       if (!flg) break;
595a30f8f8cSSatish Balay 
596a30f8f8cSSatish Balay       for (i=0; i<n;) {
597a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
598a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
599a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
600a30f8f8cSSatish Balay         else       ncols = n-i;
601a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
602a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
603a30f8f8cSSatish Balay         i = j;
604a30f8f8cSSatish Balay       }
605a30f8f8cSSatish Balay     }
606a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
607a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
608a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
609a30f8f8cSSatish Balay        restore the original flags */
610a30f8f8cSSatish Balay     r1 = baij->roworiented;
611a30f8f8cSSatish Balay     r2 = a->roworiented;
612a30f8f8cSSatish Balay     r3 = b->roworiented;
613a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
614a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
615a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
616a30f8f8cSSatish Balay     while (1) {
617a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
618a30f8f8cSSatish Balay       if (!flg) break;
619a30f8f8cSSatish Balay 
620a30f8f8cSSatish Balay       for (i=0; i<n;) {
621a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
622a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
623a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
624a30f8f8cSSatish Balay         else       ncols = n-i;
625a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
626a30f8f8cSSatish Balay         i = j;
627a30f8f8cSSatish Balay       }
628a30f8f8cSSatish Balay     }
629a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
630a30f8f8cSSatish Balay     baij->roworiented = r1;
631a30f8f8cSSatish Balay     a->roworiented    = r2;
632a30f8f8cSSatish Balay     b->roworiented    = r3;
633a30f8f8cSSatish Balay   }
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
636a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
637a30f8f8cSSatish Balay 
638a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
639a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
640a30f8f8cSSatish Balay   /*
641a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
642a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
643a30f8f8cSSatish Balay   */
644a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
645a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
646a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
647c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
648a30f8f8cSSatish Balay     }
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
653a30f8f8cSSatish Balay   }
6544eb6d288SHong Zhang   b->compressedrow.use = PETSC_TRUE;
655a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
656a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (baij->rowvalues) {
659a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
660a30f8f8cSSatish Balay     baij->rowvalues = 0;
661a30f8f8cSSatish Balay   }
6625222a1afSHong Zhang 
663a30f8f8cSSatish Balay   PetscFunctionReturn(0);
664a30f8f8cSSatish Balay }
665a30f8f8cSSatish Balay 
6664a2ae208SSatish Balay #undef __FUNCT__
6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
669a30f8f8cSSatish Balay {
670a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
671dfbe8321SBarry Smith   PetscErrorCode    ierr;
672521d7252SBarry Smith   PetscInt          bs = mat->bs;
6731302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
67432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
675b0a32e0cSBarry Smith   PetscViewer       sviewer;
676f3ef73ceSBarry Smith   PetscViewerFormat format;
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay   PetscFunctionBegin;
67932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
680fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68132077d6dSBarry Smith   if (iascii) {
682b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
683456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
684a30f8f8cSSatish Balay       MatInfo info;
685a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
686a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
68777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
68877431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
689521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
690a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
694b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
695a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       PetscFunctionReturn(0);
697fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
69877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
699a30f8f8cSSatish Balay       PetscFunctionReturn(0);
700c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
701c1490034SHong Zhang       PetscFunctionReturn(0);
702a30f8f8cSSatish Balay     }
703a30f8f8cSSatish Balay   }
704a30f8f8cSSatish Balay 
705a30f8f8cSSatish Balay   if (isdraw) {
706b0a32e0cSBarry Smith     PetscDraw       draw;
707a30f8f8cSSatish Balay     PetscTruth isnull;
708b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
709b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay   if (size == 1) {
713e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay   } else {
716a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
717a30f8f8cSSatish Balay     Mat         A;
71865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
71965d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
7201302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
721a30f8f8cSSatish Balay     MatScalar   *a;
722a30f8f8cSSatish Balay 
723f204ca49SKris Buschelman     /* Should this be the same type as mat? */
724f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
725a30f8f8cSSatish Balay     if (!rank) {
726f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
727a30f8f8cSSatish Balay     } else {
728f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
729a30f8f8cSSatish Balay     }
730f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
731521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay     /* copy over the A part */
73565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
736a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7371302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
740a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
741a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
742a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
743a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
744a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
745a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
746a30f8f8cSSatish Balay           col++; a += bs;
747a30f8f8cSSatish Balay         }
748a30f8f8cSSatish Balay       }
749a30f8f8cSSatish Balay     }
750a30f8f8cSSatish Balay     /* copy over the B part */
75165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
753a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
754a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
755a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
756a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
757a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
758a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
759a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
760a30f8f8cSSatish Balay           col++; a += bs;
761a30f8f8cSSatish Balay         }
762a30f8f8cSSatish Balay       }
763a30f8f8cSSatish Balay     }
764a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
765a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
766a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
767a30f8f8cSSatish Balay     /*
768a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
769b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
770a30f8f8cSSatish Balay     */
771b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77265d70643SHong Zhang     if (!rank) {
773e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
774a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
775a30f8f8cSSatish Balay     }
776b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
777a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
778a30f8f8cSSatish Balay   }
779a30f8f8cSSatish Balay   PetscFunctionReturn(0);
780a30f8f8cSSatish Balay }
781a30f8f8cSSatish Balay 
7824a2ae208SSatish Balay #undef __FUNCT__
7834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
784dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
785a30f8f8cSSatish Balay {
786dfbe8321SBarry Smith   PetscErrorCode ierr;
78732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
788a30f8f8cSSatish Balay 
789a30f8f8cSSatish Balay   PetscFunctionBegin;
79032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
791fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
792b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
793fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
79432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
795a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
796a30f8f8cSSatish Balay   } else {
7971302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
798a30f8f8cSSatish Balay   }
799a30f8f8cSSatish Balay   PetscFunctionReturn(0);
800a30f8f8cSSatish Balay }
801a30f8f8cSSatish Balay 
8024a2ae208SSatish Balay #undef __FUNCT__
8034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
804dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
805a30f8f8cSSatish Balay {
806a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
807dfbe8321SBarry Smith   PetscErrorCode ierr;
808a30f8f8cSSatish Balay 
809a30f8f8cSSatish Balay   PetscFunctionBegin;
810a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
81177431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
812a30f8f8cSSatish Balay #endif
813a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
814a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
815a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
816a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
817a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
818a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
819a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
820a30f8f8cSSatish Balay #else
821a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
822a30f8f8cSSatish Balay #endif
823a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
824a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
825a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
82640781036SHong Zhang   if (baij->slvec0) {
82740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
82840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
82940781036SHong Zhang   }
83040781036SHong Zhang   if (baij->slvec1) {
83140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
83440781036SHong Zhang   }
83540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
836a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
837a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
838a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
839a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
840a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
841a30f8f8cSSatish Balay #endif
842a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
843901853e0SKris Buschelman 
844901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
845901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
846901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
847901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
848a30f8f8cSSatish Balay   PetscFunctionReturn(0);
849a30f8f8cSSatish Balay }
850a30f8f8cSSatish Balay 
8514a2ae208SSatish Balay #undef __FUNCT__
852a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
853dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
854a9d4b620SHong Zhang {
855a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
856dfbe8321SBarry Smith   PetscErrorCode ierr;
857521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
858a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
859a9d4b620SHong Zhang 
860a9d4b620SHong Zhang   PetscFunctionBegin;
861a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
862a9d4b620SHong Zhang   if (nt != A->n) {
863a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
864a9d4b620SHong Zhang   }
865a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
866a9d4b620SHong Zhang   if (nt != A->m) {
867a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
868a9d4b620SHong Zhang   }
869a9d4b620SHong Zhang 
870a9d4b620SHong Zhang   /* diagonal part */
871a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8722dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang   /* subdiagonal part */
875a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
876a9d4b620SHong Zhang 
877a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8781ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8791ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
880a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8811ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
882a9d4b620SHong Zhang 
883a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
8841ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
885a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
886a9d4b620SHong Zhang 
887a9d4b620SHong Zhang   /* supperdiagonal part */
888a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
889a9d4b620SHong Zhang 
890a9d4b620SHong Zhang   PetscFunctionReturn(0);
891a9d4b620SHong Zhang }
892a9d4b620SHong Zhang 
893a9d4b620SHong Zhang #undef __FUNCT__
89440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
895dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
896a30f8f8cSSatish Balay {
897a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
898dfbe8321SBarry Smith   PetscErrorCode ierr;
8991302d50aSBarry Smith   PetscInt       nt;
900a30f8f8cSSatish Balay 
901a30f8f8cSSatish Balay   PetscFunctionBegin;
902a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
903b5df2d14SHong Zhang   if (nt != A->n) {
90429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
905a30f8f8cSSatish Balay   }
906a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
907b5df2d14SHong Zhang   if (nt != A->m) {
90829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
909a30f8f8cSSatish Balay   }
91065d70643SHong Zhang 
911b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
912b941877fSHong Zhang   /* do diagonal part */
913b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
914b941877fSHong Zhang   /* do supperdiagonal part */
915b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
916b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
917b941877fSHong Zhang   /* do subdiagonal part */
918b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
919b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
920b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
92165d70643SHong Zhang 
922a30f8f8cSSatish Balay   PetscFunctionReturn(0);
923a30f8f8cSSatish Balay }
924a30f8f8cSSatish Balay 
9254a2ae208SSatish Balay #undef __FUNCT__
9264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
927dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
928a30f8f8cSSatish Balay {
929de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
930dfbe8321SBarry Smith   PetscErrorCode ierr;
931521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
932a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   PetscFunctionBegin;
935a9d4b620SHong Zhang   /*
93656faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
93756faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
938a9d4b620SHong Zhang   */
939a9d4b620SHong Zhang   /* diagonal part */
940a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9412dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
942a9d4b620SHong Zhang 
943a9d4b620SHong Zhang   /* subdiagonal part */
944a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
945a9d4b620SHong Zhang 
946a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9471ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9481ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
949a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9501ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
951a9d4b620SHong Zhang 
952a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9531ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
954a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   /* supperdiagonal part */
957a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang   PetscFunctionReturn(0);
960a9d4b620SHong Zhang }
961a9d4b620SHong Zhang 
962a9d4b620SHong Zhang #undef __FUNCT__
963a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
964dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
965a9d4b620SHong Zhang {
966a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
967dfbe8321SBarry Smith   PetscErrorCode ierr;
968a30f8f8cSSatish Balay 
969a30f8f8cSSatish Balay   PetscFunctionBegin;
970b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
971b941877fSHong Zhang   /* do diagonal part */
972b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
973b941877fSHong Zhang   /* do supperdiagonal part */
974b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
975de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
976de8b6608SHong Zhang 
977b941877fSHong Zhang   /* do subdiagonal part */
978a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
979a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
981aa482183SHong Zhang 
982a30f8f8cSSatish Balay   PetscFunctionReturn(0);
983a30f8f8cSSatish Balay }
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay /*
986a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
987a30f8f8cSSatish Balay    diagonal block
988a30f8f8cSSatish Balay */
9894a2ae208SSatish Balay #undef __FUNCT__
9904a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
991dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
992a30f8f8cSSatish Balay {
993a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
994dfbe8321SBarry Smith   PetscErrorCode ierr;
995a30f8f8cSSatish Balay 
996a30f8f8cSSatish Balay   PetscFunctionBegin;
99729bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
998a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
999a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1000a30f8f8cSSatish Balay }
1001a30f8f8cSSatish Balay 
10024a2ae208SSatish Balay #undef __FUNCT__
10034a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1004f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1005a30f8f8cSSatish Balay {
1006a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1007dfbe8321SBarry Smith   PetscErrorCode ierr;
1008a30f8f8cSSatish Balay 
1009a30f8f8cSSatish Balay   PetscFunctionBegin;
1010f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1011f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1012a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1013a30f8f8cSSatish Balay }
1014a30f8f8cSSatish Balay 
10154a2ae208SSatish Balay #undef __FUNCT__
10164a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10171302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1018a30f8f8cSSatish Balay {
1019a30f8f8cSSatish Balay   PetscFunctionBegin;
1020d23016edSBarry Smith   if (matin) SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format");
1021a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10261302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1027a30f8f8cSSatish Balay {
1028a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1029a30f8f8cSSatish Balay 
1030a30f8f8cSSatish Balay   PetscFunctionBegin;
1031abc0a331SBarry Smith   if (!baij->getrowactive) {
1032abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1033a30f8f8cSSatish Balay   }
1034a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1035a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1036a30f8f8cSSatish Balay }
1037a30f8f8cSSatish Balay 
10384a2ae208SSatish Balay #undef __FUNCT__
103999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
104099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
104199cafbc1SBarry Smith {
104299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
104399cafbc1SBarry Smith   PetscErrorCode ierr;
104499cafbc1SBarry Smith 
104599cafbc1SBarry Smith   PetscFunctionBegin;
104699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
104799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
104899cafbc1SBarry Smith   PetscFunctionReturn(0);
104999cafbc1SBarry Smith }
105099cafbc1SBarry Smith 
105199cafbc1SBarry Smith #undef __FUNCT__
105299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
105399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
105499cafbc1SBarry Smith {
105599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
105699cafbc1SBarry Smith   PetscErrorCode ierr;
105799cafbc1SBarry Smith 
105899cafbc1SBarry Smith   PetscFunctionBegin;
105999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
106099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
106199cafbc1SBarry Smith   PetscFunctionReturn(0);
106299cafbc1SBarry Smith }
106399cafbc1SBarry Smith 
106499cafbc1SBarry Smith #undef __FUNCT__
10654a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1066dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1067a30f8f8cSSatish Balay {
1068a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1069dfbe8321SBarry Smith   PetscErrorCode ierr;
1070a30f8f8cSSatish Balay 
1071a30f8f8cSSatish Balay   PetscFunctionBegin;
1072a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1073a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1074a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1075a30f8f8cSSatish Balay }
1076a30f8f8cSSatish Balay 
10774a2ae208SSatish Balay #undef __FUNCT__
10784a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1079dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1080a30f8f8cSSatish Balay {
1081a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1082a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1083dfbe8321SBarry Smith   PetscErrorCode ierr;
1084a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1085a30f8f8cSSatish Balay 
1086a30f8f8cSSatish Balay   PetscFunctionBegin;
1087521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1088a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1089a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1090a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1091a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1092a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1093a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1094a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1095a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1096a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1097a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1098a30f8f8cSSatish Balay     info->memory       = isend[3];
1099a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1100a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1101d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1102a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1103a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1104a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1105a30f8f8cSSatish Balay     info->memory       = irecv[3];
1106a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1107a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1108d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1109a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1110a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1111a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1112a30f8f8cSSatish Balay     info->memory       = irecv[3];
1113a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1114a30f8f8cSSatish Balay   } else {
111577431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1116a30f8f8cSSatish Balay   }
1117f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1118f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1119f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1120f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1121a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1122a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1123a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1124a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1125a30f8f8cSSatish Balay }
1126a30f8f8cSSatish Balay 
11274a2ae208SSatish Balay #undef __FUNCT__
11284a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1129dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1130a30f8f8cSSatish Balay {
1131a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1132dfbe8321SBarry Smith   PetscErrorCode ierr;
1133a30f8f8cSSatish Balay 
1134a30f8f8cSSatish Balay   PetscFunctionBegin;
1135e98b92d7SKris Buschelman   switch (op) {
1136e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1137e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1138e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1139e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1140e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1141e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1142e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1143a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1144a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1145e98b92d7SKris Buschelman     break;
1146e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1147a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1148a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1149a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1150e98b92d7SKris Buschelman     break;
1151e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1152e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1153e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
115463ba0a88SBarry Smith     ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr);
1155e98b92d7SKris Buschelman     break;
1156e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1157a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1158a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1159a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1160e98b92d7SKris Buschelman     break;
1161e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1162a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1163e98b92d7SKris Buschelman     break;
1164e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
116529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1166e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1167a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1168e98b92d7SKris Buschelman     break;
11699a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
11709a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
11719a4540c5SBarry Smith   case MAT_HERMITIAN:
11729a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
117377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
117477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
11759a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
11769a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
11779a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
117877e54ba9SKris Buschelman     break;
1179e98b92d7SKris Buschelman   default:
118029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1181a30f8f8cSSatish Balay   }
1182a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1183a30f8f8cSSatish Balay }
1184a30f8f8cSSatish Balay 
11854a2ae208SSatish Balay #undef __FUNCT__
11868115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1187dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1188a30f8f8cSSatish Balay {
1189dfbe8321SBarry Smith   PetscErrorCode ierr;
1190a30f8f8cSSatish Balay   PetscFunctionBegin;
1191999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
11928115998fSBarry Smith   PetscFunctionReturn(0);
1193a30f8f8cSSatish Balay }
1194a30f8f8cSSatish Balay 
11954a2ae208SSatish Balay #undef __FUNCT__
11964a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1197dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1198a30f8f8cSSatish Balay {
1199a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1200a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1201dfbe8321SBarry Smith   PetscErrorCode ierr;
12025e90f9d9SHong Zhang   PetscInt       nv,m,n;
1203b3bf805bSHong Zhang   PetscTruth     flg;
1204a30f8f8cSSatish Balay 
1205a30f8f8cSSatish Balay   PetscFunctionBegin;
1206a30f8f8cSSatish Balay   if (ll != rr){
1207b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1208b3bf805bSHong Zhang     if (!flg)
120929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1210a30f8f8cSSatish Balay   }
1211b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1212b3bf805bSHong Zhang 
12135e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12145e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1215b3bf805bSHong Zhang 
12165e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12175e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12185e90f9d9SHong Zhang 
1219a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
12205e90f9d9SHong Zhang 
12215e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1222a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12235e90f9d9SHong Zhang 
12245e90f9d9SHong Zhang   /* scale the diagonal part */
1225a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1226a30f8f8cSSatish Balay 
12275e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1228a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1229a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1235dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1238a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
12391302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1240dfbe8321SBarry Smith   PetscErrorCode    ierr;
1241a30f8f8cSSatish Balay 
1242a30f8f8cSSatish Balay   PetscFunctionBegin;
1243a30f8f8cSSatish Balay   if (!a->rank) {
1244a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1245a30f8f8cSSatish Balay   }
12461302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1247a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1248a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1249a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1250a30f8f8cSSatish Balay }
1251a30f8f8cSSatish Balay 
12524a2ae208SSatish Balay #undef __FUNCT__
12534a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1254dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1255a30f8f8cSSatish Balay {
1256f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1257dfbe8321SBarry Smith   PetscErrorCode ierr;
1258a30f8f8cSSatish Balay 
1259a30f8f8cSSatish Balay   PetscFunctionBegin;
1260a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1261a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1262a30f8f8cSSatish Balay }
1263a30f8f8cSSatish Balay 
12646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1265a30f8f8cSSatish Balay 
12664a2ae208SSatish Balay #undef __FUNCT__
12674a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1268dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1269a30f8f8cSSatish Balay {
1270a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1271a30f8f8cSSatish Balay   Mat            a,b,c,d;
1272a30f8f8cSSatish Balay   PetscTruth     flg;
1273dfbe8321SBarry Smith   PetscErrorCode ierr;
1274a30f8f8cSSatish Balay 
1275a30f8f8cSSatish Balay   PetscFunctionBegin;
1276a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1277a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1278a30f8f8cSSatish Balay 
1279a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1280abc0a331SBarry Smith   if (flg) {
1281a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1282a30f8f8cSSatish Balay   }
1283a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1284a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1285a30f8f8cSSatish Balay }
1286a30f8f8cSSatish Balay 
12874a2ae208SSatish Balay #undef __FUNCT__
12884a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1289dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1290273d9f13SBarry Smith {
1291dfbe8321SBarry Smith   PetscErrorCode ierr;
1292273d9f13SBarry Smith 
1293273d9f13SBarry Smith   PetscFunctionBegin;
1294273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1295273d9f13SBarry Smith   PetscFunctionReturn(0);
1296273d9f13SBarry Smith }
1297a5e6ed63SBarry Smith 
1298*4fe895cdSHong Zhang #include "petscblaslapack.h"
1299*4fe895cdSHong Zhang #undef __FUNCT__
1300*4fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
1301*4fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
1302*4fe895cdSHong Zhang {
1303*4fe895cdSHong Zhang   PetscErrorCode ierr;
1304*4fe895cdSHong Zhang   PetscInt       i;
1305*4fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
1306*4fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
1307*4fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
1308*4fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
1309*4fe895cdSHong Zhang 
1310*4fe895cdSHong Zhang   PetscFunctionBegin;
1311*4fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
1312*4fe895cdSHong Zhang     PetscScalar alpha = a;
1313*4fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
1314*4fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
1315*4fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
1316*4fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
1317*4fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
1318*4fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
1319*4fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
1320*4fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
1321*4fe895cdSHong Zhang   } else {
1322*4fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1323*4fe895cdSHong Zhang   }
1324*4fe895cdSHong Zhang   PetscFunctionReturn(0);
1325*4fe895cdSHong Zhang }
1326*4fe895cdSHong Zhang 
1327a5e6ed63SBarry Smith #undef __FUNCT__
1328a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13291302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1330a5e6ed63SBarry Smith {
13316849ba73SBarry Smith   PetscErrorCode ierr;
13321302d50aSBarry Smith   PetscInt       i;
1333a5e6ed63SBarry Smith   PetscTruth     flg;
1334a5e6ed63SBarry Smith 
13356849ba73SBarry Smith   PetscFunctionBegin;
1336a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1337a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1338a5e6ed63SBarry Smith     if (!flg) {
13391302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1340a5e6ed63SBarry Smith     }
1341a5e6ed63SBarry Smith   }
1342a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1343a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1344a5e6ed63SBarry Smith }
1345a5e6ed63SBarry Smith 
1346a5e6ed63SBarry Smith 
1347a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1348a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1349a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1350a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1351a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1352a9d4b620SHong Zhang        MatMult_MPISBAIJ,
135397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1354431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1355431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1356a30f8f8cSSatish Balay        0,
1357a30f8f8cSSatish Balay        0,
1358a30f8f8cSSatish Balay        0,
135997304618SKris Buschelman /*10*/ 0,
1360a30f8f8cSSatish Balay        0,
1361a30f8f8cSSatish Balay        0,
13622798e883SHong Zhang        MatRelax_MPISBAIJ,
1363a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
136497304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1365a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1366a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1367a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1368a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
136997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1370a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1371a30f8f8cSSatish Balay        0,
1372a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1373a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1374dcf5cc72SBarry Smith /*25*/ 0,
1375a30f8f8cSSatish Balay        0,
1376a30f8f8cSSatish Balay        0,
1377a30f8f8cSSatish Balay        0,
1378a30f8f8cSSatish Balay        0,
137997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1380b5df2d14SHong Zhang        0,
1381a30f8f8cSSatish Balay        0,
1382a30f8f8cSSatish Balay        0,
1383a30f8f8cSSatish Balay        0,
138497304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1385a30f8f8cSSatish Balay        0,
1386a30f8f8cSSatish Balay        0,
1387a30f8f8cSSatish Balay        0,
1388a30f8f8cSSatish Balay        0,
1389*4fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1390a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1391d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1392a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1393a30f8f8cSSatish Balay        0,
139497304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1395a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1396a30f8f8cSSatish Balay        0,
1397a30f8f8cSSatish Balay        0,
1398a30f8f8cSSatish Balay        0,
1399521d7252SBarry Smith /*50*/ 0,
1400a30f8f8cSSatish Balay        0,
1401a30f8f8cSSatish Balay        0,
1402a30f8f8cSSatish Balay        0,
1403a30f8f8cSSatish Balay        0,
140497304618SKris Buschelman /*55*/ 0,
1405a30f8f8cSSatish Balay        0,
1406a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1407a30f8f8cSSatish Balay        0,
1408a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
140997304618SKris Buschelman /*60*/ 0,
1410a30f8f8cSSatish Balay        0,
1411a30f8f8cSSatish Balay        0,
14128a124369SBarry Smith        MatGetPetscMaps_Petsc,
141324d5174aSHong Zhang        0,
141497304618SKris Buschelman /*65*/ 0,
141524d5174aSHong Zhang        0,
141624d5174aSHong Zhang        0,
141724d5174aSHong Zhang        0,
141824d5174aSHong Zhang        0,
141997304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
142024d5174aSHong Zhang        0,
142197304618SKris Buschelman        0,
142297304618SKris Buschelman        0,
142397304618SKris Buschelman        0,
142497304618SKris Buschelman /*75*/ 0,
142597304618SKris Buschelman        0,
142697304618SKris Buschelman        0,
142797304618SKris Buschelman        0,
142897304618SKris Buschelman        0,
142997304618SKris Buschelman /*80*/ 0,
143097304618SKris Buschelman        0,
143197304618SKris Buschelman        0,
143297304618SKris Buschelman        0,
1433865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1434865e5f61SKris Buschelman /*85*/ 0,
1435865e5f61SKris Buschelman        0,
1436865e5f61SKris Buschelman        0,
1437865e5f61SKris Buschelman        0,
1438865e5f61SKris Buschelman        0,
1439865e5f61SKris Buschelman /*90*/ 0,
1440865e5f61SKris Buschelman        0,
1441865e5f61SKris Buschelman        0,
1442865e5f61SKris Buschelman        0,
1443865e5f61SKris Buschelman        0,
1444865e5f61SKris Buschelman /*95*/ 0,
1445865e5f61SKris Buschelman        0,
1446865e5f61SKris Buschelman        0,
144799cafbc1SBarry Smith        0,
144899cafbc1SBarry Smith        0,
144999cafbc1SBarry Smith /*100*/0,
145099cafbc1SBarry Smith        0,
145199cafbc1SBarry Smith        0,
145299cafbc1SBarry Smith        0,
145399cafbc1SBarry Smith        0,
145499cafbc1SBarry Smith /*105*/0,
145599cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
145699cafbc1SBarry Smith        MatImaginaryPart_MPISBAIJ
145799cafbc1SBarry Smith };
1458a30f8f8cSSatish Balay 
1459a30f8f8cSSatish Balay 
1460a30f8f8cSSatish Balay EXTERN_C_BEGIN
14614a2ae208SSatish Balay #undef __FUNCT__
14624a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1463be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1464a30f8f8cSSatish Balay {
1465a30f8f8cSSatish Balay   PetscFunctionBegin;
1466a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1467a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1468a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1469a30f8f8cSSatish Balay }
1470a30f8f8cSSatish Balay EXTERN_C_END
1471a30f8f8cSSatish Balay 
1472273d9f13SBarry Smith EXTERN_C_BEGIN
14734a2ae208SSatish Balay #undef __FUNCT__
1474a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1475be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1476a23d5eceSKris Buschelman {
1477a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1478dfbe8321SBarry Smith   PetscErrorCode ierr;
14791302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1480a23d5eceSKris Buschelman 
1481a23d5eceSKris Buschelman   PetscFunctionBegin;
1482a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1483a23d5eceSKris Buschelman 
1484a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1485a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1486a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
148777431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
148877431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1489a23d5eceSKris Buschelman   if (d_nnz) {
1490a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
149177431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1492a23d5eceSKris Buschelman     }
1493a23d5eceSKris Buschelman   }
1494a23d5eceSKris Buschelman   if (o_nnz) {
1495a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
149677431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1497a23d5eceSKris Buschelman     }
1498a23d5eceSKris Buschelman   }
1499a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1500a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1501a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1502a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1503a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1504a23d5eceSKris Buschelman 
1505a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1506a23d5eceSKris Buschelman   mbs = B->m/bs;
1507a23d5eceSKris Buschelman   Mbs = B->M/bs;
1508a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
150977431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1510a23d5eceSKris Buschelman   }
1511a23d5eceSKris Buschelman 
1512521d7252SBarry Smith   B->bs  = bs;
1513a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1514a23d5eceSKris Buschelman   b->mbs = mbs;
1515a23d5eceSKris Buschelman   b->nbs = mbs;
1516a23d5eceSKris Buschelman   b->Mbs = Mbs;
1517a23d5eceSKris Buschelman   b->Nbs = Mbs;
1518a23d5eceSKris Buschelman 
1519a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1520a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1521a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1522a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1523a23d5eceSKris Buschelman   }
1524a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1525a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1526a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1527a23d5eceSKris Buschelman   b->cend      = b->rend;
1528a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1529a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1530a23d5eceSKris Buschelman   }
1531a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1532a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1533a23d5eceSKris Buschelman 
1534a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1535a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1536a23d5eceSKris Buschelman 
1537f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1538f69a0ea3SMatthew Knepley   ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr);
15399c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1540c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
154152e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
15429c097c71SKris Buschelman 
1543f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1544f69a0ea3SMatthew Knepley   ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr);
15454aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1546589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
154752e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1548a23d5eceSKris Buschelman 
1549a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1550a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1551a23d5eceSKris Buschelman 
1552a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1553a23d5eceSKris Buschelman }
1554a23d5eceSKris Buschelman EXTERN_C_END
1555a23d5eceSKris Buschelman 
15560bad9183SKris Buschelman /*MC
1557fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
15580bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15590bad9183SKris Buschelman 
15600bad9183SKris Buschelman    Options Database Keys:
15610bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
15620bad9183SKris Buschelman 
15630bad9183SKris Buschelman   Level: beginner
15640bad9183SKris Buschelman 
15650bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15660bad9183SKris Buschelman M*/
15670bad9183SKris Buschelman 
1568a23d5eceSKris Buschelman EXTERN_C_BEGIN
1569a23d5eceSKris Buschelman #undef __FUNCT__
15704a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1571be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1572b5df2d14SHong Zhang {
1573b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1574dfbe8321SBarry Smith   PetscErrorCode ierr;
1575b5df2d14SHong Zhang   PetscTruth     flg;
1576b5df2d14SHong Zhang 
1577b5df2d14SHong Zhang   PetscFunctionBegin;
1578b5df2d14SHong Zhang 
1579b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1580b0a32e0cSBarry Smith   B->data = (void*)b;
1581b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1582b5df2d14SHong Zhang 
1583b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1584b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1585b5df2d14SHong Zhang   B->mapping    = 0;
1586b5df2d14SHong Zhang   B->factor     = 0;
1587b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1588b5df2d14SHong Zhang 
1589b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1590b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1591b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1592b5df2d14SHong Zhang 
1593b5df2d14SHong Zhang   /* build local table of row and column ownerships */
15941302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1595273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1596273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
159752e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1598b5df2d14SHong Zhang 
1599b5df2d14SHong Zhang   /* build cache for off array entries formed */
1600b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1601b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1602b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1603b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1604b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1605b5df2d14SHong Zhang 
1606f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1607b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
160864a35ccbSBarry Smith   b->setvalueslen     = 0;
1609b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1610b5df2d14SHong Zhang #endif
1611b5df2d14SHong Zhang 
1612b5df2d14SHong Zhang   /* stuff used in block assembly */
1613b5df2d14SHong Zhang   b->barray       = 0;
1614b5df2d14SHong Zhang 
1615b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1616b5df2d14SHong Zhang   b->lvec         = 0;
1617b5df2d14SHong Zhang   b->Mvctx        = 0;
161840781036SHong Zhang   b->slvec0       = 0;
161940781036SHong Zhang   b->slvec0b      = 0;
162040781036SHong Zhang   b->slvec1       = 0;
162140781036SHong Zhang   b->slvec1a      = 0;
162240781036SHong Zhang   b->slvec1b      = 0;
162340781036SHong Zhang   b->sMvctx       = 0;
1624b5df2d14SHong Zhang 
1625b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1626b5df2d14SHong Zhang   b->rowindices   = 0;
1627b5df2d14SHong Zhang   b->rowvalues    = 0;
1628b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1629b5df2d14SHong Zhang 
1630b5df2d14SHong Zhang   /* hash table stuff */
1631b5df2d14SHong Zhang   b->ht           = 0;
1632b5df2d14SHong Zhang   b->hd           = 0;
1633b5df2d14SHong Zhang   b->ht_size      = 0;
1634b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1635b5df2d14SHong Zhang   b->ht_fact      = 0;
1636b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1637b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1638b5df2d14SHong Zhang 
1639e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1640b5df2d14SHong Zhang   if (flg) {
1641f6275e2eSBarry Smith     PetscReal fact = 1.39;
1642b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1643e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1644b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1645b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
164663ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr);
1647b5df2d14SHong Zhang   }
1648b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1649b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1650b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1651b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1652b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1653b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1654b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1655b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1656b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1657a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1658a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1659a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
166023ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
166123ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
166223ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
166323ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1664b5df2d14SHong Zhang   PetscFunctionReturn(0);
1665b5df2d14SHong Zhang }
1666273d9f13SBarry Smith EXTERN_C_END
1667b5df2d14SHong Zhang 
1668209238afSKris Buschelman /*MC
1669002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1670209238afSKris Buschelman 
1671209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1672209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1673209238afSKris Buschelman 
1674209238afSKris Buschelman    Options Database Keys:
1675209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1676209238afSKris Buschelman 
1677209238afSKris Buschelman   Level: beginner
1678209238afSKris Buschelman 
1679209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1680209238afSKris Buschelman M*/
1681209238afSKris Buschelman 
1682209238afSKris Buschelman EXTERN_C_BEGIN
1683209238afSKris Buschelman #undef __FUNCT__
1684209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1685be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1686dfbe8321SBarry Smith {
16876849ba73SBarry Smith   PetscErrorCode ierr;
16881302d50aSBarry Smith   PetscMPIInt    size;
1689209238afSKris Buschelman 
1690209238afSKris Buschelman   PetscFunctionBegin;
1691209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1692209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1693209238afSKris Buschelman   if (size == 1) {
1694209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1695209238afSKris Buschelman   } else {
1696209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1697209238afSKris Buschelman   }
1698209238afSKris Buschelman   PetscFunctionReturn(0);
1699209238afSKris Buschelman }
1700209238afSKris Buschelman EXTERN_C_END
1701209238afSKris Buschelman 
17024a2ae208SSatish Balay #undef __FUNCT__
17034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1704b5df2d14SHong Zhang /*@C
1705b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1706b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1707b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1708b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1709b5df2d14SHong Zhang 
1710b5df2d14SHong Zhang    Collective on Mat
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang    Input Parameters:
1713b5df2d14SHong Zhang +  A - the matrix
1714b5df2d14SHong Zhang .  bs   - size of blockk
1715b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1716b5df2d14SHong Zhang            submatrix  (same for all local rows)
1717b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17186d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17196d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17206d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1721b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1722b5df2d14SHong Zhang            submatrix (same for all local rows).
1723b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1724b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1725b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1726b5df2d14SHong Zhang 
1727b5df2d14SHong Zhang 
1728b5df2d14SHong Zhang    Options Database Keys:
1729b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1730b5df2d14SHong Zhang                      block calculations (much slower)
1731b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1732b5df2d14SHong Zhang 
1733b5df2d14SHong Zhang    Notes:
1734b5df2d14SHong Zhang 
1735b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1736b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1737b5df2d14SHong Zhang 
173849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
173949a6f317SBarry Smith 
1740b5df2d14SHong Zhang    Storage Information:
1741b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1742b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1743b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1744b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1745b5df2d14SHong Zhang 
1746b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1747b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1748b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1749b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1750b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1751b5df2d14SHong Zhang 
1752b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1753b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang .vb
1756b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1757b5df2d14SHong Zhang           -------------------
1758b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1759b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1760b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1761b5df2d14SHong Zhang           -------------------
1762b5df2d14SHong Zhang .ve
1763b5df2d14SHong Zhang 
1764b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1765b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17666d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17676d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1768b5df2d14SHong Zhang 
17696d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17706d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1771b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1772b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1773b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1774b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1775b5df2d14SHong Zhang    matrices.
1776b5df2d14SHong Zhang 
1777b5df2d14SHong Zhang    Level: intermediate
1778b5df2d14SHong Zhang 
1779b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1780b5df2d14SHong Zhang 
1781b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1782b5df2d14SHong Zhang @*/
1783be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1784b5df2d14SHong Zhang {
17851302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1786b5df2d14SHong Zhang 
1787b5df2d14SHong Zhang   PetscFunctionBegin;
1788a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1789a23d5eceSKris Buschelman   if (f) {
1790a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1791b5df2d14SHong Zhang   }
1792b5df2d14SHong Zhang   PetscFunctionReturn(0);
1793b5df2d14SHong Zhang }
1794b5df2d14SHong Zhang 
17954a2ae208SSatish Balay #undef __FUNCT__
17964a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1797a30f8f8cSSatish Balay /*@C
1798a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1799a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1800a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1801a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1802a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1803a30f8f8cSSatish Balay 
1804a30f8f8cSSatish Balay    Collective on MPI_Comm
1805a30f8f8cSSatish Balay 
1806a30f8f8cSSatish Balay    Input Parameters:
1807a30f8f8cSSatish Balay +  comm - MPI communicator
1808a30f8f8cSSatish Balay .  bs   - size of blockk
1809a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1810a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1811a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1812a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1813a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1814a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1815a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1816a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1817a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1818a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1819a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18206d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18216d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18226d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1823a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1824a30f8f8cSSatish Balay            submatrix (same for all local rows).
1825a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1826a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1827a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1828a30f8f8cSSatish Balay 
1829a30f8f8cSSatish Balay    Output Parameter:
1830a30f8f8cSSatish Balay .  A - the matrix
1831a30f8f8cSSatish Balay 
1832a30f8f8cSSatish Balay    Options Database Keys:
1833a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1834a30f8f8cSSatish Balay                      block calculations (much slower)
1835a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1836a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1837a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1838a30f8f8cSSatish Balay 
1839a30f8f8cSSatish Balay    Notes:
1840d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1841d1be2dadSMatthew Knepley 
1842a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1843a30f8f8cSSatish Balay    (possibly both).
1844a30f8f8cSSatish Balay 
1845a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1846a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1847a30f8f8cSSatish Balay 
184849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
184949a6f317SBarry Smith 
1850a30f8f8cSSatish Balay    Storage Information:
1851a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1852a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1853a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1854a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1855a30f8f8cSSatish Balay 
1856a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1857a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1858a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1859a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1860a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1861a30f8f8cSSatish Balay 
1862a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1863a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1864a30f8f8cSSatish Balay 
1865a30f8f8cSSatish Balay .vb
1866a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1867a30f8f8cSSatish Balay           -------------------
1868a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1869a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1870a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1871a30f8f8cSSatish Balay           -------------------
1872a30f8f8cSSatish Balay .ve
1873a30f8f8cSSatish Balay 
1874a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1875a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
18766d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18776d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1878a30f8f8cSSatish Balay 
18796d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18806d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1881a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1882a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1883a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1884a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1885a30f8f8cSSatish Balay    matrices.
1886a30f8f8cSSatish Balay 
1887a30f8f8cSSatish Balay    Level: intermediate
1888a30f8f8cSSatish Balay 
1889a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1890a30f8f8cSSatish Balay 
1891a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1892a30f8f8cSSatish Balay @*/
1893a30f8f8cSSatish Balay 
1894be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1895a30f8f8cSSatish Balay {
18966849ba73SBarry Smith   PetscErrorCode ierr;
18971302d50aSBarry Smith   PetscMPIInt    size;
1898a30f8f8cSSatish Balay 
1899a30f8f8cSSatish Balay   PetscFunctionBegin;
1900f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1901f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1902273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1903273d9f13SBarry Smith   if (size > 1) {
1904b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1905b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1906273d9f13SBarry Smith   } else {
1907273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1908273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1909273d9f13SBarry Smith   }
1910a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1911a30f8f8cSSatish Balay }
1912a30f8f8cSSatish Balay 
1913a30f8f8cSSatish Balay 
19144a2ae208SSatish Balay #undef __FUNCT__
19154a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
19166849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1917a30f8f8cSSatish Balay {
1918a30f8f8cSSatish Balay   Mat            mat;
1919a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1920dfbe8321SBarry Smith   PetscErrorCode ierr;
1921521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
1922387bc808SHong Zhang   PetscScalar    *array;
1923a30f8f8cSSatish Balay 
1924a30f8f8cSSatish Balay   PetscFunctionBegin;
1925a30f8f8cSSatish Balay   *newmat       = 0;
1926f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
1927f69a0ea3SMatthew Knepley   ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr);
1928be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
19291d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1930e1b6402fSHong Zhang 
193182327fa8SHong Zhang   mat->factor       = matin->factor;
1932273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
193382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
19347fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
19357fff6886SHong Zhang 
1936b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1937521d7252SBarry Smith   mat->bs  = matin->bs;
1938a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1939a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1940a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1941a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1942a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1943a30f8f8cSSatish Balay 
1944a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1945a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1946a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1947a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1948a30f8f8cSSatish Balay   a->size         = oldmat->size;
1949a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1950a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1951a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1952a30f8f8cSSatish Balay   a->rowindices   = 0;
1953a30f8f8cSSatish Balay   a->rowvalues    = 0;
1954a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1955a30f8f8cSSatish Balay   a->barray       = 0;
1956a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1957a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1958a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1959a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1960a30f8f8cSSatish Balay 
1961a30f8f8cSSatish Balay   /* hash table stuff */
1962a30f8f8cSSatish Balay   a->ht           = 0;
1963a30f8f8cSSatish Balay   a->hd           = 0;
1964a30f8f8cSSatish Balay   a->ht_size      = 0;
1965a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1966a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1967a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1968a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1969a30f8f8cSSatish Balay 
19701302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
1971a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1972521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
1973a30f8f8cSSatish Balay   if (oldmat->colmap) {
1974a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
1975a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1976a30f8f8cSSatish Balay #else
19771302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
197852e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
19791302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
1980a30f8f8cSSatish Balay #endif
1981a30f8f8cSSatish Balay   } else a->colmap = 0;
1982387bc808SHong Zhang 
1983a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
19841302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
198552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
19861302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
1987a30f8f8cSSatish Balay   } else a->garray = 0;
1988a30f8f8cSSatish Balay 
1989a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
199052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
1991a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
199252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
199382327fa8SHong Zhang 
199482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
199552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
199682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
199752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
1998387bc808SHong Zhang 
1999387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
20001ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2001387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2002387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
20031ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
20041ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2005387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
20061ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
200752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
200852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
200952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
201052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
201152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2012387bc808SHong Zhang 
2013387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2014387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2015387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
201652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
201782327fa8SHong Zhang 
2018a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
201952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2020a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
202152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2022b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2023a30f8f8cSSatish Balay   *newmat = mat;
2024a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2025a30f8f8cSSatish Balay }
2026a30f8f8cSSatish Balay 
2027a30f8f8cSSatish Balay #include "petscsys.h"
2028a30f8f8cSSatish Balay 
20294a2ae208SSatish Balay #undef __FUNCT__
20304a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2031f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2032a30f8f8cSSatish Balay {
2033a30f8f8cSSatish Balay   Mat            A;
20346849ba73SBarry Smith   PetscErrorCode ierr;
203513f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
203687828ca2SBarry Smith   PetscScalar    *vals,*buf;
2037a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2038a30f8f8cSSatish Balay   MPI_Status     status;
20392fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
204013f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
20412fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
20421302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
20431302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
20441302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
204513f74950SBarry Smith   int            fd;
2046a30f8f8cSSatish Balay 
2047a30f8f8cSSatish Balay   PetscFunctionBegin;
2048b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2049a30f8f8cSSatish Balay 
2050a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2051a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2052a30f8f8cSSatish Balay   if (!rank) {
2053b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2054a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2055552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2056a30f8f8cSSatish Balay     if (header[3] < 0) {
205729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2058a30f8f8cSSatish Balay     }
2059a30f8f8cSSatish Balay   }
2060a30f8f8cSSatish Balay 
2061a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2062a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2063a30f8f8cSSatish Balay 
206429bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2065a30f8f8cSSatish Balay 
2066a30f8f8cSSatish Balay   /*
2067a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2068a30f8f8cSSatish Balay      divisible by the blocksize
2069a30f8f8cSSatish Balay   */
2070a30f8f8cSSatish Balay   Mbs        = M/bs;
2071a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2072a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2073a30f8f8cSSatish Balay   else                  Mbs++;
2074a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
207563ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
2076a30f8f8cSSatish Balay   }
2077a30f8f8cSSatish Balay 
2078a30f8f8cSSatish Balay   /* determine ownership of all rows */
2079a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2080a30f8f8cSSatish Balay   m          = mbs*bs;
2081a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2082a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2083a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2084a30f8f8cSSatish Balay   rowners[0] = 0;
2085a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2086a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2087a30f8f8cSSatish Balay   rstart = rowners[rank];
2088a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2089a30f8f8cSSatish Balay 
2090a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
20912fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2092a30f8f8cSSatish Balay   if (!rank) {
20931302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2094a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2095a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2096a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2097a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2098a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2099a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2100a30f8f8cSSatish Balay   } else {
2101a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2102a30f8f8cSSatish Balay   }
2103a30f8f8cSSatish Balay 
21040222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2105a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
21061302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
21071302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2108a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2109a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2110a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2111a30f8f8cSSatish Balay       }
2112a30f8f8cSSatish Balay     }
2113a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2114a30f8f8cSSatish Balay 
2115a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2116a30f8f8cSSatish Balay     maxnz = 0;
2117a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2118a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2119a30f8f8cSSatish Balay     }
21201302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2121a30f8f8cSSatish Balay 
2122a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2123a30f8f8cSSatish Balay     nz     = procsnz[0];
21241302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2125a30f8f8cSSatish Balay     mycols = ibuf;
2126a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2127a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2128a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2129a30f8f8cSSatish Balay 
2130a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2131a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2132a30f8f8cSSatish Balay       nz   = procsnz[i];
2133a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2134a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2135a30f8f8cSSatish Balay     }
2136a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2137a30f8f8cSSatish Balay     if (size != 1) {
2138a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2139a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2140a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2141a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2142a30f8f8cSSatish Balay     }
2143a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21440222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2145a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2146a30f8f8cSSatish Balay     nz = 0;
2147a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2148a30f8f8cSSatish Balay       nz += locrowlens[i];
2149a30f8f8cSSatish Balay     }
21501302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay     mycols = ibuf;
2152a30f8f8cSSatish Balay     /* receive message of column indices*/
2153a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2154a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
215529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2156a30f8f8cSSatish Balay   }
2157a30f8f8cSSatish Balay 
2158a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
21591302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2160a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
21611302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
21621302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2163a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2164a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2165a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2166a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2167a30f8f8cSSatish Balay     dcount  = 0;
2168a30f8f8cSSatish Balay     odcount = 0;
2169a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2170a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2171a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21720222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2173a30f8f8cSSatish Balay         if (!mask[tmp]) {
2174a30f8f8cSSatish Balay           mask[tmp] = 1;
21750222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21760222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2177a30f8f8cSSatish Balay         }
2178a30f8f8cSSatish Balay       }
2179a30f8f8cSSatish Balay       rowcount++;
2180a30f8f8cSSatish Balay     }
2181a30f8f8cSSatish Balay 
21820222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
21830222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2184a30f8f8cSSatish Balay 
2185a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2186a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2187a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2188a30f8f8cSSatish Balay   }
2189a30f8f8cSSatish Balay 
2190a30f8f8cSSatish Balay   /* create our matrix */
2191f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2192f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
219322191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
219422191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2195273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2196a30f8f8cSSatish Balay 
2197a30f8f8cSSatish Balay   if (!rank) {
219887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2199a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2200a30f8f8cSSatish Balay     nz = procsnz[0];
2201a30f8f8cSSatish Balay     vals = buf;
2202a30f8f8cSSatish Balay     mycols = ibuf;
2203a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2204a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2206a30f8f8cSSatish Balay 
2207a30f8f8cSSatish Balay     /* insert into matrix */
2208a30f8f8cSSatish Balay     jj      = rstart*bs;
2209a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22107e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2211a30f8f8cSSatish Balay       mycols += locrowlens[i];
2212a30f8f8cSSatish Balay       vals   += locrowlens[i];
2213a30f8f8cSSatish Balay       jj++;
2214a30f8f8cSSatish Balay     }
22157e06b45fSHong Zhang 
2216a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2217a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2218a30f8f8cSSatish Balay       nz   = procsnz[i];
2219a30f8f8cSSatish Balay       vals = buf;
2220a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay     }
2223a30f8f8cSSatish Balay     /* the last proc */
2224a30f8f8cSSatish Balay     if (size != 1){
2225a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2226a30f8f8cSSatish Balay       vals = buf;
2227a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2229a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay     }
2231a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22327e06b45fSHong Zhang 
2233a30f8f8cSSatish Balay   } else {
2234a30f8f8cSSatish Balay     /* receive numeric values */
223587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay 
2237a30f8f8cSSatish Balay     /* receive message of values*/
2238a30f8f8cSSatish Balay     vals   = buf;
2239a30f8f8cSSatish Balay     mycols = ibuf;
2240a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
224229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2243a30f8f8cSSatish Balay 
2244a30f8f8cSSatish Balay     /* insert into matrix */
2245a30f8f8cSSatish Balay     jj      = rstart*bs;
2246a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2247a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2248a30f8f8cSSatish Balay       mycols += locrowlens[i];
2249a30f8f8cSSatish Balay       vals   += locrowlens[i];
2250a30f8f8cSSatish Balay       jj++;
2251a30f8f8cSSatish Balay     }
2252a30f8f8cSSatish Balay   }
22537e06b45fSHong Zhang 
2254a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2257a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2259a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2260a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2261a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
226222191285SKris Buschelman   *newmat = A;
2263a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2264a30f8f8cSSatish Balay }
2265a30f8f8cSSatish Balay 
22664a2ae208SSatish Balay #undef __FUNCT__
22674a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2268dcf5cc72SBarry Smith /*XXXXX@
2269a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2270a30f8f8cSSatish Balay 
2271a30f8f8cSSatish Balay    Input Parameters:
2272a30f8f8cSSatish Balay .  mat  - the matrix
2273a30f8f8cSSatish Balay .  fact - factor
2274a30f8f8cSSatish Balay 
2275a30f8f8cSSatish Balay    Collective on Mat
2276a30f8f8cSSatish Balay 
2277a30f8f8cSSatish Balay    Level: advanced
2278a30f8f8cSSatish Balay 
2279a30f8f8cSSatish Balay   Notes:
2280a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2281a30f8f8cSSatish Balay 
2282a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2283a30f8f8cSSatish Balay 
2284a30f8f8cSSatish Balay .seealso: MatSetOption()
2285dcf5cc72SBarry Smith @XXXXX*/
2286dcf5cc72SBarry Smith 
228724d5174aSHong Zhang 
22884a2ae208SSatish Balay #undef __FUNCT__
22894a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2290dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
229124d5174aSHong Zhang {
229224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2293f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2294ca54ac64SHong Zhang   PetscReal      atmp;
229587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2296dfbe8321SBarry Smith   PetscErrorCode ierr;
22971302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
22981302d50aSBarry Smith   PetscMPIInt    rank,size;
22991302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
230087828ca2SBarry Smith   PetscScalar    *va;
23018a1c53f2SBarry Smith   MatScalar      *ba;
2302f4c0e9e4SHong Zhang   MPI_Status     stat;
230324d5174aSHong Zhang 
230424d5174aSHong Zhang   PetscFunctionBegin;
2305d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
23061ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2307f4c0e9e4SHong Zhang 
230856faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
230956faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2310f4c0e9e4SHong Zhang 
2311521d7252SBarry Smith   bs   = A->bs;
2312f4c0e9e4SHong Zhang   mbs  = a->mbs;
2313f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2314f4c0e9e4SHong Zhang   ba   = b->a;
2315f4c0e9e4SHong Zhang   bi   = b->i;
2316f4c0e9e4SHong Zhang   bj   = b->j;
2317f4c0e9e4SHong Zhang 
2318f4c0e9e4SHong Zhang   /* find ownerships */
2319f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2320f4c0e9e4SHong Zhang 
2321f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
232282502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2323ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2324f4c0e9e4SHong Zhang 
2325f4c0e9e4SHong Zhang   /* row_max for B */
2326b8475685SHong Zhang   if (rank != size-1){
2327f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2328f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2329f4c0e9e4SHong Zhang       brow  = bs*i;
2330f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2331f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2332f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2333ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
233404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2335f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2336f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2337ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2338ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2339f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2340f4c0e9e4SHong Zhang           }
2341f4c0e9e4SHong Zhang         }
2342f4c0e9e4SHong Zhang         bj++;
2343f4c0e9e4SHong Zhang       }
2344f4c0e9e4SHong Zhang     }
2345f4c0e9e4SHong Zhang 
2346f4c0e9e4SHong Zhang     /* send values to its owners */
2347f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2348f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2349ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
235056faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2351ca54ac64SHong Zhang     }
2352f4c0e9e4SHong Zhang   }
2353f4c0e9e4SHong Zhang 
2354f4c0e9e4SHong Zhang   /* receive values */
2355ca54ac64SHong Zhang   if (rank){
2356f4c0e9e4SHong Zhang     rvalues = work;
2357ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2358f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
235956faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2360f4c0e9e4SHong Zhang       /* process values */
2361f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2362ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2363f4c0e9e4SHong Zhang       }
2364f4c0e9e4SHong Zhang     }
2365ca54ac64SHong Zhang   }
2366f4c0e9e4SHong Zhang 
23671ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2368ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
236924d5174aSHong Zhang   PetscFunctionReturn(0);
237024d5174aSHong Zhang }
23712798e883SHong Zhang 
23722798e883SHong Zhang #undef __FUNCT__
23732798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
23741302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
23752798e883SHong Zhang {
23762798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2377dfbe8321SBarry Smith   PetscErrorCode ierr;
2378521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2379efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2380ffe4fb16SHong Zhang   Vec            bb1;
2381ffe4fb16SHong Zhang 
2382ffe4fb16SHong Zhang   PetscFunctionBegin;
238377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2384ffe4fb16SHong Zhang   if (bs > 1)
2385ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2386ffe4fb16SHong Zhang 
2387ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2388ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2389ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2390ffe4fb16SHong Zhang       its--;
2391ffe4fb16SHong Zhang     }
2392ffe4fb16SHong Zhang 
2393ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2394ffe4fb16SHong Zhang     while (its--){
2395ffe4fb16SHong Zhang 
2396ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2397ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2398ffe4fb16SHong Zhang 
2399ffe4fb16SHong Zhang       /* copy xx into slvec0a */
24001ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
24011ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2402ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24031ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2404ffe4fb16SHong Zhang 
2405efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2406ffe4fb16SHong Zhang 
2407ffe4fb16SHong Zhang       /* copy bb into slvec1a */
24081ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
24091ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2410ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24111ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2412ffe4fb16SHong Zhang 
2413ffe4fb16SHong Zhang       /* set slvec1b = 0 */
24142dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2415ffe4fb16SHong Zhang 
2416ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
24171ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
24181ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2419ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2420ffe4fb16SHong Zhang 
2421ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2422ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2423ffe4fb16SHong Zhang 
2424ffe4fb16SHong Zhang       /* local diagonal sweep */
2425ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2426ffe4fb16SHong Zhang     }
2427ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2428ffe4fb16SHong Zhang   } else {
2429ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2430ffe4fb16SHong Zhang   }
2431ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2432ffe4fb16SHong Zhang }
2433ffe4fb16SHong Zhang 
2434ffe4fb16SHong Zhang #undef __FUNCT__
2435ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
24361302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2437ffe4fb16SHong Zhang {
2438ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2439dfbe8321SBarry Smith   PetscErrorCode ierr;
24402798e883SHong Zhang   Vec            lvec1,bb1;
24412798e883SHong Zhang 
24422798e883SHong Zhang   PetscFunctionBegin;
244377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2444521d7252SBarry Smith   if (matin->bs > 1)
24452798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24462798e883SHong Zhang 
2447c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24482798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2449bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24502798e883SHong Zhang       its--;
24512798e883SHong Zhang     }
24522798e883SHong Zhang 
24532798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24542798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24552798e883SHong Zhang     while (its--){
24562798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24572798e883SHong Zhang 
24582798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24592798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2460efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
24612798e883SHong Zhang 
24622798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24632798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
24642798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24652798e883SHong Zhang 
24662798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2467efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
24682798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
24692798e883SHong Zhang 
24702798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24712798e883SHong Zhang 
2472c14dc6b6SHong Zhang       /* diagonal sweep */
2473bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
24742798e883SHong Zhang     }
24752798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
24762798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2477c14dc6b6SHong Zhang   } else {
2478c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2479c14dc6b6SHong Zhang   }
24802798e883SHong Zhang   PetscFunctionReturn(0);
24812798e883SHong Zhang }
24822798e883SHong Zhang 
2483