xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 521d725246dfa58045cedb83828e8a3e8852731d)
1a30f8f8cSSatish Balay 
2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
3a30f8f8cSSatish Balay #include "mpisbaij.h"
4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
5a30f8f8cSSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
10177431f27SBarry Smith       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102a30f8f8cSSatish Balay       if (nrow >= rmax) { \
103a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1041302d50aSBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
105a30f8f8cSSatish Balay         MatScalar *new_a; \
106a30f8f8cSSatish Balay  \
10777431f27SBarry Smith         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
108a30f8f8cSSatish Balay  \
109a30f8f8cSSatish Balay         /* malloc new storage space */ \
1101302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \
11182502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1121302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
113a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
114a30f8f8cSSatish Balay  \
115a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
116a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
117a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
1181302d50aSBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1201302d50aSBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
121a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12287828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
124a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
125a30f8f8cSSatish Balay         /* free up old matrix storage */ \
126a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
127a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
128a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
129a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
130a30f8f8cSSatish Balay         } \
131a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
132a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
133a30f8f8cSSatish Balay  \
134a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
135a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
1361302d50aSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
1376c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE; \
138a30f8f8cSSatish Balay         a->reallocs++; \
1396c6c5352SBarry Smith         a->nz++; \
140a30f8f8cSSatish Balay       } \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       a_noinsert:; \
151a30f8f8cSSatish Balay     ailen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
154a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
155a30f8f8cSSatish Balay { \
156a30f8f8cSSatish Balay     brow = row/bs;  \
157a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
158a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
159a30f8f8cSSatish Balay       bcol = col/bs; \
160a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
161a30f8f8cSSatish Balay       low = 0; high = nrow; \
162a30f8f8cSSatish Balay       while (high-low > 3) { \
163a30f8f8cSSatish Balay         t = (low+high)/2; \
164a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
165a30f8f8cSSatish Balay         else              low  = t; \
166a30f8f8cSSatish Balay       } \
167a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
168a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
169a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
170a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
171a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
172a30f8f8cSSatish Balay           else                    *bap  = value;  \
173a30f8f8cSSatish Balay           goto b_noinsert; \
174a30f8f8cSSatish Balay         } \
175a30f8f8cSSatish Balay       } \
176a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
17777431f27SBarry Smith       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
178a30f8f8cSSatish Balay       if (nrow >= rmax) { \
179a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1801302d50aSBarry Smith         PetscInt       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
181a30f8f8cSSatish Balay         MatScalar *new_a; \
182a30f8f8cSSatish Balay  \
18377431f27SBarry Smith         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
184a30f8f8cSSatish Balay  \
185a30f8f8cSSatish Balay         /* malloc new storage space */ \
1861302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \
18782502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1881302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
189a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
190a30f8f8cSSatish Balay  \
191a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
192a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
193a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
1941302d50aSBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
195a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
1961302d50aSBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
197a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
198a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
199a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
200a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
201a30f8f8cSSatish Balay         /* free up old matrix storage */ \
202a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
203a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
204a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
205a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
206a30f8f8cSSatish Balay         } \
207a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
208a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
209a30f8f8cSSatish Balay  \
210a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
211a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
2121302d50aSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
213a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
214a30f8f8cSSatish Balay         b->reallocs++; \
215a30f8f8cSSatish Balay         b->nz++; \
216a30f8f8cSSatish Balay       } \
217a30f8f8cSSatish Balay       N = nrow++ - 1;  \
218a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
219a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
220a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
221a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
222a30f8f8cSSatish Balay       } \
223a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
224a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
225a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
226a30f8f8cSSatish Balay       b_noinsert:; \
227a30f8f8cSSatish Balay     bilen[brow] = nrow; \
228a30f8f8cSSatish Balay }
229a30f8f8cSSatish Balay #endif
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2324a2ae208SSatish Balay #undef __FUNCT__
2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
235a30f8f8cSSatish Balay {
236a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
237dfbe8321SBarry Smith   PetscErrorCode ierr;
2381302d50aSBarry Smith   PetscInt       i,N = m*n;
239a30f8f8cSSatish Balay   MatScalar      *vsingle;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   PetscFunctionBegin;
242a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
243a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
24482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
245a30f8f8cSSatish Balay     b->setvalueslen  = N;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
248a30f8f8cSSatish Balay 
249a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
250a30f8f8cSSatish Balay     vsingle[i] = v[i];
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
254a30f8f8cSSatish Balay }
255a30f8f8cSSatish Balay 
2564a2ae208SSatish Balay #undef __FUNCT__
2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
259a30f8f8cSSatish Balay {
260a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
261dfbe8321SBarry Smith   PetscErrorCode ierr;
2621302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
263a30f8f8cSSatish Balay   MatScalar      *vsingle;
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   PetscFunctionBegin;
266a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
267a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
26882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
269a30f8f8cSSatish Balay     b->setvalueslen  = N;
270a30f8f8cSSatish Balay   }
271a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
272a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
273a30f8f8cSSatish Balay     vsingle[i] = v[i];
274a30f8f8cSSatish Balay   }
275a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
277a30f8f8cSSatish Balay }
278a30f8f8cSSatish Balay 
2794a2ae208SSatish Balay #undef __FUNCT__
2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
2811302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
282a30f8f8cSSatish Balay {
283a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
284dfbe8321SBarry Smith   PetscErrorCode ierr;
2851302d50aSBarry Smith   PetscInt       i,N = m*n;
286a30f8f8cSSatish Balay   MatScalar      *vsingle;
287a30f8f8cSSatish Balay 
288a30f8f8cSSatish Balay   PetscFunctionBegin;
2891302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
2904d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
291a30f8f8cSSatish Balay }
292a30f8f8cSSatish Balay 
2934a2ae208SSatish Balay #undef __FUNCT__
2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
2951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
296a30f8f8cSSatish Balay {
297a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
298dfbe8321SBarry Smith   PetscErrorCode ierr;
2991302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
300a30f8f8cSSatish Balay   MatScalar      *vsingle;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   PetscFunctionBegin;
3031302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
3044d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
305a30f8f8cSSatish Balay }
306a30f8f8cSSatish Balay #endif
307a30f8f8cSSatish Balay 
308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
309a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
310a30f8f8cSSatish Balay */
3114a2ae208SSatish Balay #undef __FUNCT__
312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
3131302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
314a30f8f8cSSatish Balay {
315a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
316a30f8f8cSSatish Balay   MatScalar      value;
317b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
318dfbe8321SBarry Smith   PetscErrorCode ierr;
3191302d50aSBarry Smith   PetscInt       i,j,row,col;
3201302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
3211302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
322*521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
323a30f8f8cSSatish Balay 
324a30f8f8cSSatish Balay   /* Some Variables required in the macro */
325a30f8f8cSSatish Balay   Mat            A = baij->A;
326a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
3271302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
328a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
329a30f8f8cSSatish Balay 
330a30f8f8cSSatish Balay   Mat            B = baij->B;
331a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
3321302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
333a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
334a30f8f8cSSatish Balay 
3351302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
3361302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
337a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
338a30f8f8cSSatish Balay 
339a30f8f8cSSatish Balay   /* for stash */
3401302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
341f65c83cfSHong Zhang   MatScalar     *v_loc=0;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   PetscFunctionBegin;
344a30f8f8cSSatish Balay 
345a30f8f8cSSatish Balay   if(!baij->donotstash){
3461302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
34782502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
348a30f8f8cSSatish Balay   }
349a30f8f8cSSatish Balay 
350a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
351a30f8f8cSSatish Balay     if (im[i] < 0) continue;
352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
35377431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
354a30f8f8cSSatish Balay #endif
355a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
356a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
357a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
358f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
359a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
360a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
361a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
362a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
363a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
364a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
365a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
366a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
36877431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
369a30f8f8cSSatish Balay #endif
370a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
371a30f8f8cSSatish Balay           if (mat->was_assembled) {
372a30f8f8cSSatish Balay             if (!baij->colmap) {
373653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
374a30f8f8cSSatish Balay             }
375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
376a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
37771730473SSatish Balay             col  = col - 1;
378a30f8f8cSSatish Balay #else
37971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
380a30f8f8cSSatish Balay #endif
381a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
382a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
383a30f8f8cSSatish Balay               col =  in[j];
384a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
385a30f8f8cSSatish Balay               B = baij->B;
386a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
387a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
388a30f8f8cSSatish Balay               ba=b->a;
38971730473SSatish Balay             } else col += in[j]%bs;
390a30f8f8cSSatish Balay           } else col = in[j];
391a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
392a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
393a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
394a30f8f8cSSatish Balay         }
395a30f8f8cSSatish Balay       }
396a30f8f8cSSatish Balay     } else {  /* off processor entry */
397a30f8f8cSSatish Balay       if (!baij->donotstash) {
398a30f8f8cSSatish Balay         n_loc = 0;
399a30f8f8cSSatish Balay         for (j=0; j<n; j++){
400f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
401a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
402a30f8f8cSSatish Balay           if (roworiented) {
403a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
404a30f8f8cSSatish Balay           } else {
405a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
406a30f8f8cSSatish Balay           }
407a30f8f8cSSatish Balay           n_loc++;
408a30f8f8cSSatish Balay         }
409a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
410a30f8f8cSSatish Balay       }
411a30f8f8cSSatish Balay     }
412a30f8f8cSSatish Balay   }
413a30f8f8cSSatish Balay 
414a30f8f8cSSatish Balay   if(!baij->donotstash){
415a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
416a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
417a30f8f8cSSatish Balay   }
418a30f8f8cSSatish Balay   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
4231302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
424a30f8f8cSSatish Balay {
4250880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
426f15d580aSBarry Smith   const MatScalar *value;
427f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4280880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
429dfbe8321SBarry Smith   PetscErrorCode  ierr;
4301302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
4311302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
432*521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
4330880e062SHong Zhang 
434a30f8f8cSSatish Balay   PetscFunctionBegin;
4350880e062SHong Zhang   if(!barray) {
4360880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4370880e062SHong Zhang     baij->barray = barray;
4380880e062SHong Zhang   }
4390880e062SHong Zhang 
4400880e062SHong Zhang   if (roworiented) {
4410880e062SHong Zhang     stepval = (n-1)*bs;
4420880e062SHong Zhang   } else {
4430880e062SHong Zhang     stepval = (m-1)*bs;
4440880e062SHong Zhang   }
4450880e062SHong Zhang   for (i=0; i<m; i++) {
4460880e062SHong Zhang     if (im[i] < 0) continue;
4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
44877431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
4490880e062SHong Zhang #endif
4500880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4510880e062SHong Zhang       row = im[i] - rstart;
4520880e062SHong Zhang       for (j=0; j<n; j++) {
4530880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4540880e062SHong Zhang         if ((roworiented) && (n == 1)) {
455f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4560880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
457f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4580880e062SHong Zhang         } else { /* Here a copy is required */
4590880e062SHong Zhang           if (roworiented) {
4600880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4610880e062SHong Zhang           } else {
4620880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4630880e062SHong Zhang           }
4640880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4650880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4660880e062SHong Zhang               *barray++  = *value++;
4670880e062SHong Zhang             }
4680880e062SHong Zhang           }
4690880e062SHong Zhang           barray -=bs2;
4700880e062SHong Zhang         }
4710880e062SHong Zhang 
4720880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4730880e062SHong Zhang           col  = in[j] - cstart;
4740880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4750880e062SHong Zhang         }
4760880e062SHong Zhang         else if (in[j] < 0) continue;
4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
47877431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
4790880e062SHong Zhang #endif
4800880e062SHong Zhang         else {
4810880e062SHong Zhang           if (mat->was_assembled) {
4820880e062SHong Zhang             if (!baij->colmap) {
483653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4840880e062SHong Zhang             }
4850880e062SHong Zhang 
4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4881302d50aSBarry Smith             { PetscInt data;
4890880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4900880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4910880e062SHong Zhang             }
4920880e062SHong Zhang #else
4930880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4940880e062SHong Zhang #endif
4950880e062SHong Zhang #endif
4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4970880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4980880e062SHong Zhang             col  = (col - 1)/bs;
4990880e062SHong Zhang #else
5000880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5010880e062SHong Zhang #endif
5020880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5030880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5040880e062SHong Zhang               col =  in[j];
5050880e062SHong Zhang             }
5060880e062SHong Zhang           }
5070880e062SHong Zhang           else col = in[j];
508e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5090880e062SHong Zhang         }
5100880e062SHong Zhang       }
5110880e062SHong Zhang     } else {
5120880e062SHong Zhang       if (!baij->donotstash) {
5130880e062SHong Zhang         if (roworiented) {
5140880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5150880e062SHong Zhang         } else {
5160880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5170880e062SHong Zhang         }
5180880e062SHong Zhang       }
5190880e062SHong Zhang     }
5200880e062SHong Zhang   }
5210880e062SHong Zhang   PetscFunctionReturn(0);
522a30f8f8cSSatish Balay }
523a30f8f8cSSatish Balay 
524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
5251302d50aSBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
5261302d50aSBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
5271302d50aSBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
5284a2ae208SSatish Balay #undef __FUNCT__
5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
5301302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
531a30f8f8cSSatish Balay {
532a30f8f8cSSatish Balay   PetscFunctionBegin;
5331302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
53496e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
535a30f8f8cSSatish Balay }
536a30f8f8cSSatish Balay 
5374a2ae208SSatish Balay #undef __FUNCT__
5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
5391302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
540a30f8f8cSSatish Balay {
541a30f8f8cSSatish Balay   PetscFunctionBegin;
5421302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
54396e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552*521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
5531302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
55777431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
55877431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
56277431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
56377431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
565a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data --;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584a30f8f8cSSatish Balay     } else {
58529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay  PetscFunctionReturn(0);
589a30f8f8cSSatish Balay }
590a30f8f8cSSatish Balay 
5914a2ae208SSatish Balay #undef __FUNCT__
5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
594a30f8f8cSSatish Balay {
595a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
596dfbe8321SBarry Smith   PetscErrorCode ierr;
597a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
598a30f8f8cSSatish Balay 
599a30f8f8cSSatish Balay   PetscFunctionBegin;
600a30f8f8cSSatish Balay   if (baij->size == 1) {
601a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
602a30f8f8cSSatish Balay   } else {
603a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
604f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
605a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
607a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
608a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
609d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
610a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
611a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
612a30f8f8cSSatish Balay     } else {
61329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
614a30f8f8cSSatish Balay     }
615a30f8f8cSSatish Balay   }
616a30f8f8cSSatish Balay   PetscFunctionReturn(0);
617a30f8f8cSSatish Balay }
618a30f8f8cSSatish Balay 
619a30f8f8cSSatish Balay /*
620a30f8f8cSSatish Balay   Creates the hash table, and sets the table
621a30f8f8cSSatish Balay   This table is created only once.
622a30f8f8cSSatish Balay   If new entried need to be added to the matrix
623a30f8f8cSSatish Balay   then the hash table has to be destroyed and
624a30f8f8cSSatish Balay   recreated.
625a30f8f8cSSatish Balay */
6264a2ae208SSatish Balay #undef __FUNCT__
6274a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
628dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
629a30f8f8cSSatish Balay {
630a30f8f8cSSatish Balay   PetscFunctionBegin;
6311302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
63296e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
633a30f8f8cSSatish Balay }
634a30f8f8cSSatish Balay 
6354a2ae208SSatish Balay #undef __FUNCT__
6364a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
637dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
638a30f8f8cSSatish Balay {
639a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
640dfbe8321SBarry Smith   PetscErrorCode ierr;
6411302d50aSBarry Smith   PetscInt       nstash,reallocs;
642a30f8f8cSSatish Balay   InsertMode     addv;
643a30f8f8cSSatish Balay 
644a30f8f8cSSatish Balay   PetscFunctionBegin;
645a30f8f8cSSatish Balay   if (baij->donotstash) {
646a30f8f8cSSatish Balay     PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
650a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
651a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
65229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
653a30f8f8cSSatish Balay   }
654a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
657a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
658a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
65977431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);
660a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
66177431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);
662a30f8f8cSSatish Balay   PetscFunctionReturn(0);
663a30f8f8cSSatish Balay }
664a30f8f8cSSatish Balay 
6654a2ae208SSatish Balay #undef __FUNCT__
6664a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
667dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
668a30f8f8cSSatish Balay {
669a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
670a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
671a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
6726849ba73SBarry Smith   PetscErrorCode ierr;
6731302d50aSBarry Smith   PetscInt       i,j,rstart,ncols,n,flg,bs2=baij->bs2;
6741302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
675a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
676a30f8f8cSSatish Balay   MatScalar      *val;
677a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
678a30f8f8cSSatish Balay 
679a30f8f8cSSatish Balay   PetscFunctionBegin;
680a30f8f8cSSatish Balay 
681a30f8f8cSSatish Balay   if (!baij->donotstash) {
682a30f8f8cSSatish Balay     while (1) {
683a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
684a30f8f8cSSatish Balay       if (!flg) break;
685a30f8f8cSSatish Balay 
686a30f8f8cSSatish Balay       for (i=0; i<n;) {
687a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
688a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
689a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
690a30f8f8cSSatish Balay         else       ncols = n-i;
691a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
692a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
693a30f8f8cSSatish Balay         i = j;
694a30f8f8cSSatish Balay       }
695a30f8f8cSSatish Balay     }
696a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
697a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
698a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
699a30f8f8cSSatish Balay        restore the original flags */
700a30f8f8cSSatish Balay     r1 = baij->roworiented;
701a30f8f8cSSatish Balay     r2 = a->roworiented;
702a30f8f8cSSatish Balay     r3 = b->roworiented;
703a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
704a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
705a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
706a30f8f8cSSatish Balay     while (1) {
707a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
708a30f8f8cSSatish Balay       if (!flg) break;
709a30f8f8cSSatish Balay 
710a30f8f8cSSatish Balay       for (i=0; i<n;) {
711a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
712a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
713a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
714a30f8f8cSSatish Balay         else       ncols = n-i;
715a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
716a30f8f8cSSatish Balay         i = j;
717a30f8f8cSSatish Balay       }
718a30f8f8cSSatish Balay     }
719a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     baij->roworiented = r1;
721a30f8f8cSSatish Balay     a->roworiented    = r2;
722a30f8f8cSSatish Balay     b->roworiented    = r3;
723a30f8f8cSSatish Balay   }
724a30f8f8cSSatish Balay 
725a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
726a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
727a30f8f8cSSatish Balay 
728a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
729a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
730a30f8f8cSSatish Balay   /*
731a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
732a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
733a30f8f8cSSatish Balay   */
734a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
735a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
736a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
737c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
738a30f8f8cSSatish Balay     }
739a30f8f8cSSatish Balay   }
740a30f8f8cSSatish Balay 
741a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
74240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
743a30f8f8cSSatish Balay   }
744a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
745a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
748a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
749f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
750a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
751a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
752a30f8f8cSSatish Balay   }
753a30f8f8cSSatish Balay #endif
754a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
755c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
756a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
757a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
758a30f8f8cSSatish Balay   }
759a30f8f8cSSatish Balay 
760a30f8f8cSSatish Balay   if (baij->rowvalues) {
761a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
762a30f8f8cSSatish Balay     baij->rowvalues = 0;
763a30f8f8cSSatish Balay   }
7645222a1afSHong Zhang 
765a30f8f8cSSatish Balay   PetscFunctionReturn(0);
766a30f8f8cSSatish Balay }
767a30f8f8cSSatish Balay 
7684a2ae208SSatish Balay #undef __FUNCT__
7694a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7706849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
771a30f8f8cSSatish Balay {
772a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
773dfbe8321SBarry Smith   PetscErrorCode    ierr;
774*521d7252SBarry Smith   PetscInt          bs = mat->bs;
7751302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
77632077d6dSBarry Smith   PetscTruth        iascii,isdraw;
777b0a32e0cSBarry Smith   PetscViewer       sviewer;
778f3ef73ceSBarry Smith   PetscViewerFormat format;
779a30f8f8cSSatish Balay 
780a30f8f8cSSatish Balay   PetscFunctionBegin;
78132077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
782fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
78332077d6dSBarry Smith   if (iascii) {
784b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
785456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
786a30f8f8cSSatish Balay       MatInfo info;
787a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
788a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
78977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
79077431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
791*521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
792a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
79377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
794a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
79577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
796b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
797a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
798a30f8f8cSSatish Balay       PetscFunctionReturn(0);
799fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
80077431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
801a30f8f8cSSatish Balay       PetscFunctionReturn(0);
802a30f8f8cSSatish Balay     }
803a30f8f8cSSatish Balay   }
804a30f8f8cSSatish Balay 
805a30f8f8cSSatish Balay   if (isdraw) {
806b0a32e0cSBarry Smith     PetscDraw       draw;
807a30f8f8cSSatish Balay     PetscTruth isnull;
808b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
809b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
810a30f8f8cSSatish Balay   }
811a30f8f8cSSatish Balay 
812a30f8f8cSSatish Balay   if (size == 1) {
813e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
814a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
815a30f8f8cSSatish Balay   } else {
816a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
817a30f8f8cSSatish Balay     Mat         A;
81865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
81965d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
8201302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
821a30f8f8cSSatish Balay     MatScalar   *a;
822a30f8f8cSSatish Balay 
823f204ca49SKris Buschelman     /* Should this be the same type as mat? */
824a30f8f8cSSatish Balay     if (!rank) {
825f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
826a30f8f8cSSatish Balay     } else {
827f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
828a30f8f8cSSatish Balay     }
829f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
830*521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
831b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
832a30f8f8cSSatish Balay 
833a30f8f8cSSatish Balay     /* copy over the A part */
83465d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
835a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
8361302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
837a30f8f8cSSatish Balay 
838a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
839a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
840a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
841a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
842a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
843a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
844a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
845a30f8f8cSSatish Balay           col++; a += bs;
846a30f8f8cSSatish Balay         }
847a30f8f8cSSatish Balay       }
848a30f8f8cSSatish Balay     }
849a30f8f8cSSatish Balay     /* copy over the B part */
85065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
85165d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
852a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
853a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
854a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
855a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
856a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
857a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
858a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
859a30f8f8cSSatish Balay           col++; a += bs;
860a30f8f8cSSatish Balay         }
861a30f8f8cSSatish Balay       }
862a30f8f8cSSatish Balay     }
863a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
864a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
865a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
866a30f8f8cSSatish Balay     /*
867a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
868b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
869a30f8f8cSSatish Balay     */
870b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
87165d70643SHong Zhang     if (!rank) {
872e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
873a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
874a30f8f8cSSatish Balay     }
875b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
876a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
877a30f8f8cSSatish Balay   }
878a30f8f8cSSatish Balay   PetscFunctionReturn(0);
879a30f8f8cSSatish Balay }
880a30f8f8cSSatish Balay 
8814a2ae208SSatish Balay #undef __FUNCT__
8824a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
883dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
884a30f8f8cSSatish Balay {
885dfbe8321SBarry Smith   PetscErrorCode ierr;
88632077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
887a30f8f8cSSatish Balay 
888a30f8f8cSSatish Balay   PetscFunctionBegin;
88932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
890fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
891b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
892fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
89332077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
894a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
895a30f8f8cSSatish Balay   } else {
8961302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
897a30f8f8cSSatish Balay   }
898a30f8f8cSSatish Balay   PetscFunctionReturn(0);
899a30f8f8cSSatish Balay }
900a30f8f8cSSatish Balay 
9014a2ae208SSatish Balay #undef __FUNCT__
9024a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
903dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
904a30f8f8cSSatish Balay {
905a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
906dfbe8321SBarry Smith   PetscErrorCode ierr;
907a30f8f8cSSatish Balay 
908a30f8f8cSSatish Balay   PetscFunctionBegin;
909a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
91077431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
911a30f8f8cSSatish Balay #endif
912a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
913a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
914a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
915a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
916a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
917a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
918a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
919a30f8f8cSSatish Balay #else
920a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
921a30f8f8cSSatish Balay #endif
922a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
923a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
924a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
92540781036SHong Zhang   if (baij->slvec0) {
92640781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
92740781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
92840781036SHong Zhang   }
92940781036SHong Zhang   if (baij->slvec1) {
93040781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
93140781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
93240781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
93340781036SHong Zhang   }
93440781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
935a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
936a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
937a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
938a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
939a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
940a30f8f8cSSatish Balay #endif
941a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
942901853e0SKris Buschelman 
943901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
944901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
945901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
946901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
947a30f8f8cSSatish Balay   PetscFunctionReturn(0);
948a30f8f8cSSatish Balay }
949a30f8f8cSSatish Balay 
9504a2ae208SSatish Balay #undef __FUNCT__
951a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
952dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
953a9d4b620SHong Zhang {
954a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
955dfbe8321SBarry Smith   PetscErrorCode ierr;
956*521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
957a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang   PetscFunctionBegin;
960a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
961a9d4b620SHong Zhang   if (nt != A->n) {
962a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
963a9d4b620SHong Zhang   }
964a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
965a9d4b620SHong Zhang   if (nt != A->m) {
966a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
967a9d4b620SHong Zhang   }
968a9d4b620SHong Zhang 
969a9d4b620SHong Zhang   /* diagonal part */
970a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
971a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
972a9d4b620SHong Zhang 
973a9d4b620SHong Zhang   /* subdiagonal part */
974a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
975a9d4b620SHong Zhang 
976a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9771ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9781ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
979a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9801ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
981a9d4b620SHong Zhang 
982a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9831ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
984a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
985a9d4b620SHong Zhang 
986a9d4b620SHong Zhang   /* supperdiagonal part */
987a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
988a9d4b620SHong Zhang 
989a9d4b620SHong Zhang   PetscFunctionReturn(0);
990a9d4b620SHong Zhang }
991a9d4b620SHong Zhang 
992a9d4b620SHong Zhang #undef __FUNCT__
99340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
994dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
995a30f8f8cSSatish Balay {
996a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
997dfbe8321SBarry Smith   PetscErrorCode ierr;
9981302d50aSBarry Smith   PetscInt       nt;
999a30f8f8cSSatish Balay 
1000a30f8f8cSSatish Balay   PetscFunctionBegin;
1001a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1002b5df2d14SHong Zhang   if (nt != A->n) {
100329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1004a30f8f8cSSatish Balay   }
1005a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1006b5df2d14SHong Zhang   if (nt != A->m) {
100729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1008a30f8f8cSSatish Balay   }
100965d70643SHong Zhang 
1010b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1011b941877fSHong Zhang   /* do diagonal part */
1012b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1013b941877fSHong Zhang   /* do supperdiagonal part */
1014b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1015b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1016b941877fSHong Zhang   /* do subdiagonal part */
1017b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1018b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1019b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
102065d70643SHong Zhang 
1021a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1026dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1027a30f8f8cSSatish Balay {
1028de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1029dfbe8321SBarry Smith   PetscErrorCode ierr;
1030*521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
1031a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
1032a9d4b620SHong Zhang 
1033a9d4b620SHong Zhang   PetscFunctionBegin;
1034a9d4b620SHong Zhang   /*
103556faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
103656faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1037a9d4b620SHong Zhang   */
1038a9d4b620SHong Zhang   /* diagonal part */
1039a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1040a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1041a9d4b620SHong Zhang 
1042a9d4b620SHong Zhang   /* subdiagonal part */
1043a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1044a9d4b620SHong Zhang 
1045a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10461ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10471ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1048a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
10491ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1050a9d4b620SHong Zhang 
1051a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
10521ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1053a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1054a9d4b620SHong Zhang 
1055a9d4b620SHong Zhang   /* supperdiagonal part */
1056a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1057a9d4b620SHong Zhang 
1058a9d4b620SHong Zhang   PetscFunctionReturn(0);
1059a9d4b620SHong Zhang }
1060a9d4b620SHong Zhang 
1061a9d4b620SHong Zhang #undef __FUNCT__
1062a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1063dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1064a9d4b620SHong Zhang {
1065a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1066dfbe8321SBarry Smith   PetscErrorCode ierr;
1067a30f8f8cSSatish Balay 
1068a30f8f8cSSatish Balay   PetscFunctionBegin;
1069b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1070b941877fSHong Zhang   /* do diagonal part */
1071b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1072b941877fSHong Zhang   /* do supperdiagonal part */
1073b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1074de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1075de8b6608SHong Zhang 
1076b941877fSHong Zhang   /* do subdiagonal part */
1077a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1078a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1079a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1080aa482183SHong Zhang 
1081a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1082a30f8f8cSSatish Balay }
1083a30f8f8cSSatish Balay 
10844a2ae208SSatish Balay #undef __FUNCT__
10854a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1086dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1087a30f8f8cSSatish Balay {
1088dfbe8321SBarry Smith   PetscErrorCode ierr;
10895a7c0312SHong Zhang 
1090a30f8f8cSSatish Balay   PetscFunctionBegin;
10915a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
10925a7c0312SHong Zhang   PetscFunctionReturn(0);
1093a30f8f8cSSatish Balay }
1094a30f8f8cSSatish Balay 
10954a2ae208SSatish Balay #undef __FUNCT__
10964a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1097dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1098a30f8f8cSSatish Balay {
1099dfbe8321SBarry Smith   PetscErrorCode ierr;
11005a7c0312SHong Zhang 
1101a30f8f8cSSatish Balay   PetscFunctionBegin;
11025a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
11035a7c0312SHong Zhang   PetscFunctionReturn(0);
1104a30f8f8cSSatish Balay }
1105a30f8f8cSSatish Balay 
1106a30f8f8cSSatish Balay /*
1107a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1108a30f8f8cSSatish Balay    diagonal block
1109a30f8f8cSSatish Balay */
11104a2ae208SSatish Balay #undef __FUNCT__
11114a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1112dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1113a30f8f8cSSatish Balay {
1114a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1115dfbe8321SBarry Smith   PetscErrorCode ierr;
1116a30f8f8cSSatish Balay 
1117a30f8f8cSSatish Balay   PetscFunctionBegin;
111829bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1119a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1120a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1121a30f8f8cSSatish Balay }
1122a30f8f8cSSatish Balay 
11234a2ae208SSatish Balay #undef __FUNCT__
11244a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1125dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1126a30f8f8cSSatish Balay {
1127a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1128dfbe8321SBarry Smith   PetscErrorCode ierr;
1129a30f8f8cSSatish Balay 
1130a30f8f8cSSatish Balay   PetscFunctionBegin;
1131a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1132a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1133a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1134a30f8f8cSSatish Balay }
1135a30f8f8cSSatish Balay 
11364a2ae208SSatish Balay #undef __FUNCT__
11374a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11381302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1139a30f8f8cSSatish Balay {
1140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
114187828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
11426849ba73SBarry Smith   PetscErrorCode ierr;
1143*521d7252SBarry Smith   PetscInt       bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
11441302d50aSBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
11451302d50aSBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstart;
1146a30f8f8cSSatish Balay 
1147a30f8f8cSSatish Balay   PetscFunctionBegin;
114829bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1149a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1150a30f8f8cSSatish Balay 
1151a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1152a30f8f8cSSatish Balay     /*
1153a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1154a30f8f8cSSatish Balay     */
1155a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1156a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
11571302d50aSBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1158a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1159a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1160a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1161a30f8f8cSSatish Balay     }
11621302d50aSBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
11631302d50aSBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1164a30f8f8cSSatish Balay   }
1165a30f8f8cSSatish Balay 
116629bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1167a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1168a30f8f8cSSatish Balay 
1169a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1170a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1171a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1172a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1173a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay   nztot = nzA + nzB;
1175a30f8f8cSSatish Balay 
1176a30f8f8cSSatish Balay   cmap  = mat->garray;
1177a30f8f8cSSatish Balay   if (v  || idx) {
1178a30f8f8cSSatish Balay     if (nztot) {
1179a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
11801302d50aSBarry Smith       PetscInt imark = -1;
1181a30f8f8cSSatish Balay       if (v) {
1182a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1183a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1184a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1185a30f8f8cSSatish Balay           else break;
1186a30f8f8cSSatish Balay         }
1187a30f8f8cSSatish Balay         imark = i;
1188a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1189a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1190a30f8f8cSSatish Balay       }
1191a30f8f8cSSatish Balay       if (idx) {
1192a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1193a30f8f8cSSatish Balay         if (imark > -1) {
1194a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1195a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1196a30f8f8cSSatish Balay           }
1197a30f8f8cSSatish Balay         } else {
1198a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1199a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1200a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1201a30f8f8cSSatish Balay             else break;
1202a30f8f8cSSatish Balay           }
1203a30f8f8cSSatish Balay           imark = i;
1204a30f8f8cSSatish Balay         }
1205a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1206a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1207a30f8f8cSSatish Balay       }
1208a30f8f8cSSatish Balay     } else {
1209a30f8f8cSSatish Balay       if (idx) *idx = 0;
1210a30f8f8cSSatish Balay       if (v)   *v   = 0;
1211a30f8f8cSSatish Balay     }
1212a30f8f8cSSatish Balay   }
1213a30f8f8cSSatish Balay   *nz = nztot;
1214a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1215a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1216a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1217a30f8f8cSSatish Balay }
1218a30f8f8cSSatish Balay 
12194a2ae208SSatish Balay #undef __FUNCT__
12204a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12211302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1222a30f8f8cSSatish Balay {
1223a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1224a30f8f8cSSatish Balay 
1225a30f8f8cSSatish Balay   PetscFunctionBegin;
1226a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
122729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1228a30f8f8cSSatish Balay   }
1229a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1235dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1238dfbe8321SBarry Smith   PetscErrorCode ierr;
1239a30f8f8cSSatish Balay 
1240a30f8f8cSSatish Balay   PetscFunctionBegin;
1241a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1242a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1243a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1244a30f8f8cSSatish Balay }
1245a30f8f8cSSatish Balay 
12464a2ae208SSatish Balay #undef __FUNCT__
12474a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1248dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1249a30f8f8cSSatish Balay {
1250a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1251a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1252dfbe8321SBarry Smith   PetscErrorCode ierr;
1253a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1254a30f8f8cSSatish Balay 
1255a30f8f8cSSatish Balay   PetscFunctionBegin;
1256*521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1257a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1258a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1259a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1260a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1261a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1262a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1263a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1264a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1265a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1266a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1267a30f8f8cSSatish Balay     info->memory       = isend[3];
1268a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1269a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1270d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1271a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1272a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1273a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1274a30f8f8cSSatish Balay     info->memory       = irecv[3];
1275a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1276a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1277d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1278a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1279a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1280a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1281a30f8f8cSSatish Balay     info->memory       = irecv[3];
1282a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1283a30f8f8cSSatish Balay   } else {
128477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1285a30f8f8cSSatish Balay   }
1286f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1287f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1288f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1289f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1290a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1291a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1292a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1293a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1294a30f8f8cSSatish Balay }
1295a30f8f8cSSatish Balay 
12964a2ae208SSatish Balay #undef __FUNCT__
12974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1298dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1299a30f8f8cSSatish Balay {
1300a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1301dfbe8321SBarry Smith   PetscErrorCode ierr;
1302a30f8f8cSSatish Balay 
1303a30f8f8cSSatish Balay   PetscFunctionBegin;
1304e98b92d7SKris Buschelman   switch (op) {
1305e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1306e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1307e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1308e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1309e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1310e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1311e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1312a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1313a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1314e98b92d7SKris Buschelman     break;
1315e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1316a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1317a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1318a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1319e98b92d7SKris Buschelman     break;
1320e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1321e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1322e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1323b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1324e98b92d7SKris Buschelman     break;
1325e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1326a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1327a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1328a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1329e98b92d7SKris Buschelman     break;
1330e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1331a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1332e98b92d7SKris Buschelman     break;
1333e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
133429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1335e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1336a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1337e98b92d7SKris Buschelman     break;
13389a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
13399a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
13409a4540c5SBarry Smith   case MAT_HERMITIAN:
13419a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
134277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
134377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13449a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
13459a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
13469a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
134777e54ba9SKris Buschelman     break;
1348e98b92d7SKris Buschelman   default:
134929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1350a30f8f8cSSatish Balay   }
1351a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1352a30f8f8cSSatish Balay }
1353a30f8f8cSSatish Balay 
13544a2ae208SSatish Balay #undef __FUNCT__
13558115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1356dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1357a30f8f8cSSatish Balay {
1358dfbe8321SBarry Smith   PetscErrorCode ierr;
1359a30f8f8cSSatish Balay   PetscFunctionBegin;
1360999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13618115998fSBarry Smith   PetscFunctionReturn(0);
1362a30f8f8cSSatish Balay }
1363a30f8f8cSSatish Balay 
13644a2ae208SSatish Balay #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1366dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1367a30f8f8cSSatish Balay {
1368a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1369a30f8f8cSSatish Balay   Mat            a = baij->A,b = baij->B;
1370dfbe8321SBarry Smith   PetscErrorCode ierr;
13711302d50aSBarry Smith   PetscInt       s1,s2,s3;
1372a30f8f8cSSatish Balay 
1373a30f8f8cSSatish Balay   PetscFunctionBegin;
1374a30f8f8cSSatish Balay   if (ll != rr) {
137529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1376a30f8f8cSSatish Balay   }
1377a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1378a30f8f8cSSatish Balay   if (rr) {
1379a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
138029bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1381a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1382a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1383a30f8f8cSSatish Balay     /*} if (ll) { */
1384a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
138529bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1386a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1387a30f8f8cSSatish Balay     /* } */
1388a30f8f8cSSatish Balay   /* scale  the diagonal block */
1389a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1390a30f8f8cSSatish Balay 
1391a30f8f8cSSatish Balay   /* if (rr) { */
1392a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1393a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1394a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1395a30f8f8cSSatish Balay   }
1396a30f8f8cSSatish Balay 
1397a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1398a30f8f8cSSatish Balay }
1399a30f8f8cSSatish Balay 
14004a2ae208SSatish Balay #undef __FUNCT__
14014a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
1402dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag)
1403a30f8f8cSSatish Balay {
1404a30f8f8cSSatish Balay   PetscFunctionBegin;
1405c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1406a30f8f8cSSatish Balay }
1407a30f8f8cSSatish Balay 
14084a2ae208SSatish Balay #undef __FUNCT__
14094a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1410dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1411a30f8f8cSSatish Balay {
1412a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1413a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
14141302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1415dfbe8321SBarry Smith   PetscErrorCode    ierr;
1416a30f8f8cSSatish Balay 
1417a30f8f8cSSatish Balay   PetscFunctionBegin;
1418a30f8f8cSSatish Balay   if (!a->rank) {
1419a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1420a30f8f8cSSatish Balay   }
14211302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1422a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1423a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1424a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1425a30f8f8cSSatish Balay }
1426a30f8f8cSSatish Balay 
14274a2ae208SSatish Balay #undef __FUNCT__
14284a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1429dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1430a30f8f8cSSatish Balay {
1431f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1432dfbe8321SBarry Smith   PetscErrorCode ierr;
1433a30f8f8cSSatish Balay 
1434a30f8f8cSSatish Balay   PetscFunctionBegin;
1435a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1436a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1437a30f8f8cSSatish Balay }
1438a30f8f8cSSatish Balay 
14396849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1440a30f8f8cSSatish Balay 
14414a2ae208SSatish Balay #undef __FUNCT__
14424a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1443dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1444a30f8f8cSSatish Balay {
1445a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1446a30f8f8cSSatish Balay   Mat            a,b,c,d;
1447a30f8f8cSSatish Balay   PetscTruth     flg;
1448dfbe8321SBarry Smith   PetscErrorCode ierr;
1449a30f8f8cSSatish Balay 
1450a30f8f8cSSatish Balay   PetscFunctionBegin;
1451a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1452a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1453a30f8f8cSSatish Balay 
1454a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1455a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1456a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1457a30f8f8cSSatish Balay   }
1458a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1459a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1460a30f8f8cSSatish Balay }
1461a30f8f8cSSatish Balay 
14624a2ae208SSatish Balay #undef __FUNCT__
14634a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1464dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1465273d9f13SBarry Smith {
1466dfbe8321SBarry Smith   PetscErrorCode ierr;
1467273d9f13SBarry Smith 
1468273d9f13SBarry Smith   PetscFunctionBegin;
1469273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1470273d9f13SBarry Smith   PetscFunctionReturn(0);
1471273d9f13SBarry Smith }
1472a5e6ed63SBarry Smith 
1473a5e6ed63SBarry Smith #undef __FUNCT__
1474a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14751302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1476a5e6ed63SBarry Smith {
14776849ba73SBarry Smith   PetscErrorCode ierr;
14781302d50aSBarry Smith   PetscInt       i;
1479a5e6ed63SBarry Smith   PetscTruth     flg;
1480a5e6ed63SBarry Smith 
14816849ba73SBarry Smith   PetscFunctionBegin;
1482a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1483a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1484a5e6ed63SBarry Smith     if (!flg) {
14851302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1486a5e6ed63SBarry Smith     }
1487a5e6ed63SBarry Smith   }
1488a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1489a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1490a5e6ed63SBarry Smith }
1491a5e6ed63SBarry Smith 
1492a5e6ed63SBarry Smith 
1493a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1494a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1495a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1496a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1497a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1498a9d4b620SHong Zhang        MatMult_MPISBAIJ,
149997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1500a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1501a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1502a30f8f8cSSatish Balay        0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
150597304618SKris Buschelman /*10*/ 0,
1506a30f8f8cSSatish Balay        0,
1507a30f8f8cSSatish Balay        0,
15082798e883SHong Zhang        MatRelax_MPISBAIJ,
1509a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
151097304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1511a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1512a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1513a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1514a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
151597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1516a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1517a30f8f8cSSatish Balay        0,
1518a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1519a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
152097304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ,
1521a30f8f8cSSatish Balay        0,
1522a30f8f8cSSatish Balay        0,
1523a30f8f8cSSatish Balay        0,
1524a30f8f8cSSatish Balay        0,
152597304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1526b5df2d14SHong Zhang        0,
1527a30f8f8cSSatish Balay        0,
1528a30f8f8cSSatish Balay        0,
1529a30f8f8cSSatish Balay        0,
153097304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1531a30f8f8cSSatish Balay        0,
1532a30f8f8cSSatish Balay        0,
1533a30f8f8cSSatish Balay        0,
1534a30f8f8cSSatish Balay        0,
153597304618SKris Buschelman /*40*/ 0,
1536a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1537d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1538a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1539a30f8f8cSSatish Balay        0,
154097304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1541a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1542a30f8f8cSSatish Balay        0,
1543a30f8f8cSSatish Balay        0,
1544a30f8f8cSSatish Balay        0,
1545*521d7252SBarry Smith /*50*/ 0,
1546a30f8f8cSSatish Balay        0,
1547a30f8f8cSSatish Balay        0,
1548a30f8f8cSSatish Balay        0,
1549a30f8f8cSSatish Balay        0,
155097304618SKris Buschelman /*55*/ 0,
1551a30f8f8cSSatish Balay        0,
1552a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1553a30f8f8cSSatish Balay        0,
1554a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
155597304618SKris Buschelman /*60*/ 0,
1556a30f8f8cSSatish Balay        0,
1557a30f8f8cSSatish Balay        0,
15588a124369SBarry Smith        MatGetPetscMaps_Petsc,
155924d5174aSHong Zhang        0,
156097304618SKris Buschelman /*65*/ 0,
156124d5174aSHong Zhang        0,
156224d5174aSHong Zhang        0,
156324d5174aSHong Zhang        0,
156424d5174aSHong Zhang        0,
156597304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
156624d5174aSHong Zhang        0,
156797304618SKris Buschelman        0,
156897304618SKris Buschelman        0,
156997304618SKris Buschelman        0,
157097304618SKris Buschelman /*75*/ 0,
157197304618SKris Buschelman        0,
157297304618SKris Buschelman        0,
157397304618SKris Buschelman        0,
157497304618SKris Buschelman        0,
157597304618SKris Buschelman /*80*/ 0,
157697304618SKris Buschelman        0,
157797304618SKris Buschelman        0,
157897304618SKris Buschelman        0,
1579865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1580865e5f61SKris Buschelman /*85*/ 0,
1581865e5f61SKris Buschelman        0,
1582865e5f61SKris Buschelman        0,
1583865e5f61SKris Buschelman        0,
1584865e5f61SKris Buschelman        0,
1585865e5f61SKris Buschelman /*90*/ 0,
1586865e5f61SKris Buschelman        0,
1587865e5f61SKris Buschelman        0,
1588865e5f61SKris Buschelman        0,
1589865e5f61SKris Buschelman        0,
1590865e5f61SKris Buschelman /*95*/ 0,
1591865e5f61SKris Buschelman        0,
1592865e5f61SKris Buschelman        0,
1593865e5f61SKris Buschelman        0};
1594a30f8f8cSSatish Balay 
1595a30f8f8cSSatish Balay 
1596a30f8f8cSSatish Balay EXTERN_C_BEGIN
15974a2ae208SSatish Balay #undef __FUNCT__
15984a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1599dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1600a30f8f8cSSatish Balay {
1601a30f8f8cSSatish Balay   PetscFunctionBegin;
1602a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1603a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1604a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1605a30f8f8cSSatish Balay }
1606a30f8f8cSSatish Balay EXTERN_C_END
1607a30f8f8cSSatish Balay 
1608273d9f13SBarry Smith EXTERN_C_BEGIN
16094a2ae208SSatish Balay #undef __FUNCT__
1610a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
16111302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1612a23d5eceSKris Buschelman {
1613a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1614dfbe8321SBarry Smith   PetscErrorCode ierr;
16151302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1616a23d5eceSKris Buschelman 
1617a23d5eceSKris Buschelman   PetscFunctionBegin;
1618a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1619a23d5eceSKris Buschelman 
1620a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1621a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1622a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
162377431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
162477431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1625a23d5eceSKris Buschelman   if (d_nnz) {
1626a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
162777431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1628a23d5eceSKris Buschelman     }
1629a23d5eceSKris Buschelman   }
1630a23d5eceSKris Buschelman   if (o_nnz) {
1631a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
163277431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1633a23d5eceSKris Buschelman     }
1634a23d5eceSKris Buschelman   }
1635a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1636a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1637a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1638a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1639a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1640a23d5eceSKris Buschelman 
1641a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1642a23d5eceSKris Buschelman   mbs = B->m/bs;
1643a23d5eceSKris Buschelman   Mbs = B->M/bs;
1644a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
164577431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1646a23d5eceSKris Buschelman   }
1647a23d5eceSKris Buschelman 
1648*521d7252SBarry Smith   B->bs  = bs;
1649a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1650a23d5eceSKris Buschelman   b->mbs = mbs;
1651a23d5eceSKris Buschelman   b->nbs = mbs;
1652a23d5eceSKris Buschelman   b->Mbs = Mbs;
1653a23d5eceSKris Buschelman   b->Nbs = Mbs;
1654a23d5eceSKris Buschelman 
1655a23d5eceSKris Buschelman   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1656a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1657a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1658a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1659a23d5eceSKris Buschelman   }
1660a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1661a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1662a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1663a23d5eceSKris Buschelman   b->cend      = b->rend;
1664a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1665a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1666a23d5eceSKris Buschelman   }
1667a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1668a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1669a23d5eceSKris Buschelman 
1670a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1671a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1672a23d5eceSKris Buschelman 
16739c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
16749c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1675c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
16769c097c71SKris Buschelman   PetscLogObjectParent(B,b->A);
16779c097c71SKris Buschelman 
16789c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
16794aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1680589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
16819c097c71SKris Buschelman   PetscLogObjectParent(B,b->B);
1682a23d5eceSKris Buschelman 
1683a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1684a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1685a23d5eceSKris Buschelman 
1686a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1687a23d5eceSKris Buschelman }
1688a23d5eceSKris Buschelman EXTERN_C_END
1689a23d5eceSKris Buschelman 
16900bad9183SKris Buschelman /*MC
1691fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16920bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16930bad9183SKris Buschelman 
16940bad9183SKris Buschelman    Options Database Keys:
16950bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16960bad9183SKris Buschelman 
16970bad9183SKris Buschelman   Level: beginner
16980bad9183SKris Buschelman 
16990bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17000bad9183SKris Buschelman M*/
17010bad9183SKris Buschelman 
1702a23d5eceSKris Buschelman EXTERN_C_BEGIN
1703a23d5eceSKris Buschelman #undef __FUNCT__
17044a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1705dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1706b5df2d14SHong Zhang {
1707b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1708dfbe8321SBarry Smith   PetscErrorCode ierr;
1709b5df2d14SHong Zhang   PetscTruth     flg;
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   PetscFunctionBegin;
1712b5df2d14SHong Zhang 
1713b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1714b0a32e0cSBarry Smith   B->data = (void*)b;
1715b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1716b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1717b5df2d14SHong Zhang 
1718b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1719b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1720b5df2d14SHong Zhang   B->mapping    = 0;
1721b5df2d14SHong Zhang   B->factor     = 0;
1722b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1723b5df2d14SHong Zhang 
1724b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1725b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1726b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1727b5df2d14SHong Zhang 
1728b5df2d14SHong Zhang   /* build local table of row and column ownerships */
17291302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1730273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1731273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
17321302d50aSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1733b5df2d14SHong Zhang 
1734b5df2d14SHong Zhang   /* build cache for off array entries formed */
1735b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1736b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1737b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1738b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1739b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1740b5df2d14SHong Zhang 
1741f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1742b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
174364a35ccbSBarry Smith   b->setvalueslen     = 0;
1744b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1745b5df2d14SHong Zhang #endif
1746b5df2d14SHong Zhang 
1747b5df2d14SHong Zhang   /* stuff used in block assembly */
1748b5df2d14SHong Zhang   b->barray       = 0;
1749b5df2d14SHong Zhang 
1750b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1751b5df2d14SHong Zhang   b->lvec         = 0;
1752b5df2d14SHong Zhang   b->Mvctx        = 0;
175340781036SHong Zhang   b->slvec0       = 0;
175440781036SHong Zhang   b->slvec0b      = 0;
175540781036SHong Zhang   b->slvec1       = 0;
175640781036SHong Zhang   b->slvec1a      = 0;
175740781036SHong Zhang   b->slvec1b      = 0;
175840781036SHong Zhang   b->sMvctx       = 0;
1759b5df2d14SHong Zhang 
1760b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1761b5df2d14SHong Zhang   b->rowindices   = 0;
1762b5df2d14SHong Zhang   b->rowvalues    = 0;
1763b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1764b5df2d14SHong Zhang 
1765b5df2d14SHong Zhang   /* hash table stuff */
1766b5df2d14SHong Zhang   b->ht           = 0;
1767b5df2d14SHong Zhang   b->hd           = 0;
1768b5df2d14SHong Zhang   b->ht_size      = 0;
1769b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1770b5df2d14SHong Zhang   b->ht_fact      = 0;
1771b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1772b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1773b5df2d14SHong Zhang 
1774e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1775b5df2d14SHong Zhang   if (flg) {
1776f6275e2eSBarry Smith     PetscReal fact = 1.39;
1777b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1778e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1779b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1780b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1781b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1782b5df2d14SHong Zhang   }
1783b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1784b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1785b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1786b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1787b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1788b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1789b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1790b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1791b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1792a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1793a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1794a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
179523ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
179623ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
179723ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
179823ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1799b5df2d14SHong Zhang   PetscFunctionReturn(0);
1800b5df2d14SHong Zhang }
1801273d9f13SBarry Smith EXTERN_C_END
1802b5df2d14SHong Zhang 
1803209238afSKris Buschelman /*MC
1804002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1805209238afSKris Buschelman 
1806209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1807209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1808209238afSKris Buschelman 
1809209238afSKris Buschelman    Options Database Keys:
1810209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1811209238afSKris Buschelman 
1812209238afSKris Buschelman   Level: beginner
1813209238afSKris Buschelman 
1814209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1815209238afSKris Buschelman M*/
1816209238afSKris Buschelman 
1817209238afSKris Buschelman EXTERN_C_BEGIN
1818209238afSKris Buschelman #undef __FUNCT__
1819209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1820dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A)
1821dfbe8321SBarry Smith {
18226849ba73SBarry Smith   PetscErrorCode ierr;
18231302d50aSBarry Smith   PetscMPIInt    size;
1824209238afSKris Buschelman 
1825209238afSKris Buschelman   PetscFunctionBegin;
1826209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1827209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1828209238afSKris Buschelman   if (size == 1) {
1829209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1830209238afSKris Buschelman   } else {
1831209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1832209238afSKris Buschelman   }
1833209238afSKris Buschelman   PetscFunctionReturn(0);
1834209238afSKris Buschelman }
1835209238afSKris Buschelman EXTERN_C_END
1836209238afSKris Buschelman 
18374a2ae208SSatish Balay #undef __FUNCT__
18384a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1839b5df2d14SHong Zhang /*@C
1840b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1841b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1842b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1843b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang    Collective on Mat
1846b5df2d14SHong Zhang 
1847b5df2d14SHong Zhang    Input Parameters:
1848b5df2d14SHong Zhang +  A - the matrix
1849b5df2d14SHong Zhang .  bs   - size of blockk
1850b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1851b5df2d14SHong Zhang            submatrix  (same for all local rows)
1852b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18536d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18546d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18556d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1856b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1857b5df2d14SHong Zhang            submatrix (same for all local rows).
1858b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1859b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1860b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1861b5df2d14SHong Zhang 
1862b5df2d14SHong Zhang 
1863b5df2d14SHong Zhang    Options Database Keys:
1864b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1865b5df2d14SHong Zhang                      block calculations (much slower)
1866b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1867b5df2d14SHong Zhang 
1868b5df2d14SHong Zhang    Notes:
1869b5df2d14SHong Zhang 
1870b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1871b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang    Storage Information:
1874b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1875b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1876b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1877b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1878b5df2d14SHong Zhang 
1879b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1880b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1881b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1882b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1883b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1884b5df2d14SHong Zhang 
1885b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1886b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang .vb
1889b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1890b5df2d14SHong Zhang           -------------------
1891b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1892b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1893b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1894b5df2d14SHong Zhang           -------------------
1895b5df2d14SHong Zhang .ve
1896b5df2d14SHong Zhang 
1897b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1898b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18996d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19006d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1901b5df2d14SHong Zhang 
19026d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19036d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1904b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1905b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1906b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1907b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1908b5df2d14SHong Zhang    matrices.
1909b5df2d14SHong Zhang 
1910b5df2d14SHong Zhang    Level: intermediate
1911b5df2d14SHong Zhang 
1912b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1913b5df2d14SHong Zhang 
1914b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1915b5df2d14SHong Zhang @*/
19161302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1917b5df2d14SHong Zhang {
19181302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1919b5df2d14SHong Zhang 
1920b5df2d14SHong Zhang   PetscFunctionBegin;
1921a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1922a23d5eceSKris Buschelman   if (f) {
1923a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1924b5df2d14SHong Zhang   }
1925b5df2d14SHong Zhang   PetscFunctionReturn(0);
1926b5df2d14SHong Zhang }
1927b5df2d14SHong Zhang 
19284a2ae208SSatish Balay #undef __FUNCT__
19294a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1930a30f8f8cSSatish Balay /*@C
1931a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1932a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1933a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1934a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1935a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1936a30f8f8cSSatish Balay 
1937a30f8f8cSSatish Balay    Collective on MPI_Comm
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay    Input Parameters:
1940a30f8f8cSSatish Balay +  comm - MPI communicator
1941a30f8f8cSSatish Balay .  bs   - size of blockk
1942a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1943a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1944a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1945a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1946a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1947a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1948a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1949a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1950a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1951a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1952a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19536d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19546d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19556d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1956a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1957a30f8f8cSSatish Balay            submatrix (same for all local rows).
1958a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1959a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1960a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1961a30f8f8cSSatish Balay 
1962a30f8f8cSSatish Balay    Output Parameter:
1963a30f8f8cSSatish Balay .  A - the matrix
1964a30f8f8cSSatish Balay 
1965a30f8f8cSSatish Balay    Options Database Keys:
1966a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1967a30f8f8cSSatish Balay                      block calculations (much slower)
1968a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1969a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1970a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1971a30f8f8cSSatish Balay 
1972a30f8f8cSSatish Balay    Notes:
1973a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1974a30f8f8cSSatish Balay    (possibly both).
1975a30f8f8cSSatish Balay 
1976a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1977a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1978a30f8f8cSSatish Balay 
1979a30f8f8cSSatish Balay    Storage Information:
1980a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1981a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1982a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1983a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1984a30f8f8cSSatish Balay 
1985a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1986a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1987a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1988a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1989a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1990a30f8f8cSSatish Balay 
1991a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1992a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1993a30f8f8cSSatish Balay 
1994a30f8f8cSSatish Balay .vb
1995a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1996a30f8f8cSSatish Balay           -------------------
1997a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1998a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1999a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2000a30f8f8cSSatish Balay           -------------------
2001a30f8f8cSSatish Balay .ve
2002a30f8f8cSSatish Balay 
2003a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2004a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20056d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20066d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2007a30f8f8cSSatish Balay 
20086d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20096d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2010a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2011a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2012a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2013a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2014a30f8f8cSSatish Balay    matrices.
2015a30f8f8cSSatish Balay 
2016a30f8f8cSSatish Balay    Level: intermediate
2017a30f8f8cSSatish Balay 
2018a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2019a30f8f8cSSatish Balay 
2020a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2021a30f8f8cSSatish Balay @*/
2022a30f8f8cSSatish Balay 
20231302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2024a30f8f8cSSatish Balay {
20256849ba73SBarry Smith   PetscErrorCode ierr;
20261302d50aSBarry Smith   PetscMPIInt    size;
2027a30f8f8cSSatish Balay 
2028a30f8f8cSSatish Balay   PetscFunctionBegin;
2029b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2030273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2031273d9f13SBarry Smith   if (size > 1) {
2032b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2033b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2034273d9f13SBarry Smith   } else {
2035273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2036273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2037273d9f13SBarry Smith   }
2038a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2039a30f8f8cSSatish Balay }
2040a30f8f8cSSatish Balay 
2041a30f8f8cSSatish Balay 
20424a2ae208SSatish Balay #undef __FUNCT__
20434a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2045a30f8f8cSSatish Balay {
2046a30f8f8cSSatish Balay   Mat            mat;
2047a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2048dfbe8321SBarry Smith   PetscErrorCode ierr;
2049*521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
2050387bc808SHong Zhang   PetscScalar    *array;
2051a30f8f8cSSatish Balay 
2052a30f8f8cSSatish Balay   PetscFunctionBegin;
2053a30f8f8cSSatish Balay   *newmat       = 0;
2054b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2055be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20561d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2057e1b6402fSHong Zhang 
205882327fa8SHong Zhang   mat->factor       = matin->factor;
2059273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20617fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20627fff6886SHong Zhang 
2063b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2064*521d7252SBarry Smith   mat->bs  = matin->bs;
2065a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2066a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2067a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2068a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2069a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2070a30f8f8cSSatish Balay 
2071a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2072a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2073a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2074a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2075a30f8f8cSSatish Balay   a->size         = oldmat->size;
2076a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2077a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2078a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2079a30f8f8cSSatish Balay   a->rowindices   = 0;
2080a30f8f8cSSatish Balay   a->rowvalues    = 0;
2081a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2082a30f8f8cSSatish Balay   a->barray       = 0;
2083a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2084a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2085a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2086a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2087a30f8f8cSSatish Balay 
2088a30f8f8cSSatish Balay   /* hash table stuff */
2089a30f8f8cSSatish Balay   a->ht           = 0;
2090a30f8f8cSSatish Balay   a->hd           = 0;
2091a30f8f8cSSatish Balay   a->ht_size      = 0;
2092a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2093a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2094a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2095a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2096a30f8f8cSSatish Balay 
20971302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2098a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2099*521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
2100a30f8f8cSSatish Balay   if (oldmat->colmap) {
2101a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2102a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay #else
21041302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
21051302d50aSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));
21061302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2107a30f8f8cSSatish Balay #endif
2108a30f8f8cSSatish Balay   } else a->colmap = 0;
2109387bc808SHong Zhang 
2110a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21111302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
21121302d50aSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(PetscInt));
21131302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2114a30f8f8cSSatish Balay   } else a->garray = 0;
2115a30f8f8cSSatish Balay 
2116a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2117b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2118a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2119b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
212082327fa8SHong Zhang 
212182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
2122387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
212382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
2124387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2125387bc808SHong Zhang 
2126387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21271ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2128387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2129387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21301ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2132387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21331ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
2134387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
2135387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2136387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0b);
2137387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1a);
2138387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1b);
2139387bc808SHong Zhang 
2140387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2141387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2142387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
2143387bc808SHong Zhang   PetscLogObjectParent(mat,a->sMvctx);
214482327fa8SHong Zhang 
2145a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2146b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2147a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2148b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2149b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2150a30f8f8cSSatish Balay   *newmat = mat;
2151a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2152a30f8f8cSSatish Balay }
2153a30f8f8cSSatish Balay 
2154a30f8f8cSSatish Balay #include "petscsys.h"
2155a30f8f8cSSatish Balay 
21564a2ae208SSatish Balay #undef __FUNCT__
21574a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2158dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
2159a30f8f8cSSatish Balay {
2160a30f8f8cSSatish Balay   Mat            A;
21616849ba73SBarry Smith   PetscErrorCode ierr;
21621302d50aSBarry Smith   PetscInt       i,nz,j,rstart,rend,fd;
216387828ca2SBarry Smith   PetscScalar    *vals,*buf;
2164a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2165a30f8f8cSSatish Balay   MPI_Status     status;
21661302d50aSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
21671302d50aSBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
21681302d50aSBarry Smith   PetscInt       *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
21691302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21701302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21711302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
2172a30f8f8cSSatish Balay 
2173a30f8f8cSSatish Balay   PetscFunctionBegin;
2174b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2175a30f8f8cSSatish Balay 
2176a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2178a30f8f8cSSatish Balay   if (!rank) {
2179b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2181552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2182a30f8f8cSSatish Balay     if (header[3] < 0) {
218329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2184a30f8f8cSSatish Balay     }
2185a30f8f8cSSatish Balay   }
2186a30f8f8cSSatish Balay 
2187a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2189a30f8f8cSSatish Balay 
219029bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2191a30f8f8cSSatish Balay 
2192a30f8f8cSSatish Balay   /*
2193a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2194a30f8f8cSSatish Balay      divisible by the blocksize
2195a30f8f8cSSatish Balay   */
2196a30f8f8cSSatish Balay   Mbs        = M/bs;
2197a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2198a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2199a30f8f8cSSatish Balay   else                  Mbs++;
2200a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2201b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2202a30f8f8cSSatish Balay   }
2203a30f8f8cSSatish Balay 
2204a30f8f8cSSatish Balay   /* determine ownership of all rows */
2205a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2206a30f8f8cSSatish Balay   m          = mbs*bs;
22071302d50aSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2209a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   rowners[0] = 0;
2211a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2212a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2213a30f8f8cSSatish Balay   rstart = rowners[rank];
2214a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2215a30f8f8cSSatish Balay 
2216a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22171302d50aSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
2218a30f8f8cSSatish Balay   if (!rank) {
22191302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
22221302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&sndcounts);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2224a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay   } else {
2227a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   }
2229a30f8f8cSSatish Balay 
22300222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2231a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22321302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22331302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2234a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2235a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2236a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2237a30f8f8cSSatish Balay       }
2238a30f8f8cSSatish Balay     }
2239a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2240a30f8f8cSSatish Balay 
2241a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2242a30f8f8cSSatish Balay     maxnz = 0;
2243a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2244a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2245a30f8f8cSSatish Balay     }
22461302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2247a30f8f8cSSatish Balay 
2248a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2249a30f8f8cSSatish Balay     nz     = procsnz[0];
22501302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay     mycols = ibuf;
2252a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2253a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2254a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2255a30f8f8cSSatish Balay 
2256a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2257a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2258a30f8f8cSSatish Balay       nz   = procsnz[i];
2259a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2260a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2261a30f8f8cSSatish Balay     }
2262a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2263a30f8f8cSSatish Balay     if (size != 1) {
2264a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2265a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2267a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay     }
2269a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22700222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2271a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2272a30f8f8cSSatish Balay     nz = 0;
2273a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2274a30f8f8cSSatish Balay       nz += locrowlens[i];
2275a30f8f8cSSatish Balay     }
22761302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2277a30f8f8cSSatish Balay     mycols = ibuf;
2278a30f8f8cSSatish Balay     /* receive message of column indices*/
2279a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2280a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
228129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2282a30f8f8cSSatish Balay   }
2283a30f8f8cSSatish Balay 
2284a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22851302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2286a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22871302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22881302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2289a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2290a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2291a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2292a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2293a30f8f8cSSatish Balay     dcount  = 0;
2294a30f8f8cSSatish Balay     odcount = 0;
2295a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2296a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2297a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22980222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2299a30f8f8cSSatish Balay         if (!mask[tmp]) {
2300a30f8f8cSSatish Balay           mask[tmp] = 1;
23010222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23020222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2303a30f8f8cSSatish Balay         }
2304a30f8f8cSSatish Balay       }
2305a30f8f8cSSatish Balay       rowcount++;
2306a30f8f8cSSatish Balay     }
2307a30f8f8cSSatish Balay 
23080222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23090222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2310a30f8f8cSSatish Balay 
2311a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2312a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2313a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2314a30f8f8cSSatish Balay   }
2315a30f8f8cSSatish Balay 
2316a30f8f8cSSatish Balay   /* create our matrix */
231722191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
231822191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
231922191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2320273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2321a30f8f8cSSatish Balay 
2322a30f8f8cSSatish Balay   if (!rank) {
232387828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2324a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2325a30f8f8cSSatish Balay     nz = procsnz[0];
2326a30f8f8cSSatish Balay     vals = buf;
2327a30f8f8cSSatish Balay     mycols = ibuf;
2328a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2329a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2330a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2331a30f8f8cSSatish Balay 
2332a30f8f8cSSatish Balay     /* insert into matrix */
2333a30f8f8cSSatish Balay     jj      = rstart*bs;
2334a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23357e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2336a30f8f8cSSatish Balay       mycols += locrowlens[i];
2337a30f8f8cSSatish Balay       vals   += locrowlens[i];
2338a30f8f8cSSatish Balay       jj++;
2339a30f8f8cSSatish Balay     }
23407e06b45fSHong Zhang 
2341a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2342a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2343a30f8f8cSSatish Balay       nz   = procsnz[i];
2344a30f8f8cSSatish Balay       vals = buf;
2345a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2346a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2347a30f8f8cSSatish Balay     }
2348a30f8f8cSSatish Balay     /* the last proc */
2349a30f8f8cSSatish Balay     if (size != 1){
2350a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2351a30f8f8cSSatish Balay       vals = buf;
2352a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2353a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2354a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2355a30f8f8cSSatish Balay     }
2356a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23577e06b45fSHong Zhang 
2358a30f8f8cSSatish Balay   } else {
2359a30f8f8cSSatish Balay     /* receive numeric values */
236087828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2361a30f8f8cSSatish Balay 
2362a30f8f8cSSatish Balay     /* receive message of values*/
2363a30f8f8cSSatish Balay     vals   = buf;
2364a30f8f8cSSatish Balay     mycols = ibuf;
2365a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
236729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2368a30f8f8cSSatish Balay 
2369a30f8f8cSSatish Balay     /* insert into matrix */
2370a30f8f8cSSatish Balay     jj      = rstart*bs;
2371a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2372a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2373a30f8f8cSSatish Balay       mycols += locrowlens[i];
2374a30f8f8cSSatish Balay       vals   += locrowlens[i];
2375a30f8f8cSSatish Balay       jj++;
2376a30f8f8cSSatish Balay     }
2377a30f8f8cSSatish Balay   }
23787e06b45fSHong Zhang 
2379a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2380a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2381a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2382a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2383a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2384a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2385a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238722191285SKris Buschelman   *newmat = A;
2388a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2389a30f8f8cSSatish Balay }
2390a30f8f8cSSatish Balay 
23914a2ae208SSatish Balay #undef __FUNCT__
23924a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2393a30f8f8cSSatish Balay /*@
2394a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2395a30f8f8cSSatish Balay 
2396a30f8f8cSSatish Balay    Input Parameters:
2397a30f8f8cSSatish Balay .  mat  - the matrix
2398a30f8f8cSSatish Balay .  fact - factor
2399a30f8f8cSSatish Balay 
2400a30f8f8cSSatish Balay    Collective on Mat
2401a30f8f8cSSatish Balay 
2402a30f8f8cSSatish Balay    Level: advanced
2403a30f8f8cSSatish Balay 
2404a30f8f8cSSatish Balay   Notes:
2405a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay .seealso: MatSetOption()
2410a30f8f8cSSatish Balay @*/
2411dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2412a30f8f8cSSatish Balay {
2413a30f8f8cSSatish Balay   PetscFunctionBegin;
24141302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
241596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2416a30f8f8cSSatish Balay }
241724d5174aSHong Zhang 
24184a2ae208SSatish Balay #undef __FUNCT__
24194a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2420dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
242124d5174aSHong Zhang {
242224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2423f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2424ca54ac64SHong Zhang   PetscReal      atmp;
242587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2426dfbe8321SBarry Smith   PetscErrorCode ierr;
24271302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24281302d50aSBarry Smith   PetscMPIInt    rank,size;
24291302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
243087828ca2SBarry Smith   PetscScalar    *va;
24318a1c53f2SBarry Smith   MatScalar      *ba;
2432f4c0e9e4SHong Zhang   MPI_Status     stat;
243324d5174aSHong Zhang 
243424d5174aSHong Zhang   PetscFunctionBegin;
2435d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24361ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2437f4c0e9e4SHong Zhang 
243856faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
243956faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2440f4c0e9e4SHong Zhang 
2441*521d7252SBarry Smith   bs   = A->bs;
2442f4c0e9e4SHong Zhang   mbs  = a->mbs;
2443f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2444f4c0e9e4SHong Zhang   ba   = b->a;
2445f4c0e9e4SHong Zhang   bi   = b->i;
2446f4c0e9e4SHong Zhang   bj   = b->j;
2447f4c0e9e4SHong Zhang 
2448f4c0e9e4SHong Zhang   /* find ownerships */
2449f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2450f4c0e9e4SHong Zhang 
2451f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245282502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2453ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2454f4c0e9e4SHong Zhang 
2455f4c0e9e4SHong Zhang   /* row_max for B */
2456b8475685SHong Zhang   if (rank != size-1){
2457f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2458f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2459f4c0e9e4SHong Zhang       brow  = bs*i;
2460f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2461f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2462f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2463ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2465f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2466f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2467ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2468ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2469f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2470f4c0e9e4SHong Zhang           }
2471f4c0e9e4SHong Zhang         }
2472f4c0e9e4SHong Zhang         bj++;
2473f4c0e9e4SHong Zhang       }
2474f4c0e9e4SHong Zhang     }
2475f4c0e9e4SHong Zhang 
2476f4c0e9e4SHong Zhang     /* send values to its owners */
2477f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2478f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2479ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
248056faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2481ca54ac64SHong Zhang     }
2482f4c0e9e4SHong Zhang   }
2483f4c0e9e4SHong Zhang 
2484f4c0e9e4SHong Zhang   /* receive values */
2485ca54ac64SHong Zhang   if (rank){
2486f4c0e9e4SHong Zhang     rvalues = work;
2487ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2488f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
248956faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2490f4c0e9e4SHong Zhang       /* process values */
2491f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2492ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2493f4c0e9e4SHong Zhang       }
2494f4c0e9e4SHong Zhang     }
2495ca54ac64SHong Zhang   }
2496f4c0e9e4SHong Zhang 
24971ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2498ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
249924d5174aSHong Zhang   PetscFunctionReturn(0);
250024d5174aSHong Zhang }
25012798e883SHong Zhang 
25022798e883SHong Zhang #undef __FUNCT__
25032798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
25041302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25052798e883SHong Zhang {
25062798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2507dfbe8321SBarry Smith   PetscErrorCode ierr;
2508*521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2509ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2510ffe4fb16SHong Zhang   Vec            bb1;
2511ffe4fb16SHong Zhang 
2512ffe4fb16SHong Zhang   PetscFunctionBegin;
251377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2514ffe4fb16SHong Zhang   if (bs > 1)
2515ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2516ffe4fb16SHong Zhang 
2517ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2518ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2519ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2520ffe4fb16SHong Zhang       its--;
2521ffe4fb16SHong Zhang     }
2522ffe4fb16SHong Zhang 
2523ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2524ffe4fb16SHong Zhang     while (its--){
2525ffe4fb16SHong Zhang 
2526ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2527ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2528ffe4fb16SHong Zhang 
2529ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25301ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25311ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2532ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25331ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2534ffe4fb16SHong Zhang 
2535ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2536ffe4fb16SHong Zhang 
2537ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25381ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25391ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2540ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25411ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2542ffe4fb16SHong Zhang 
2543ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2544ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2545ffe4fb16SHong Zhang 
2546ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25471ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25481ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2549ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2550ffe4fb16SHong Zhang 
2551ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2552ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang       /* local diagonal sweep */
2555ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang     }
2557ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang   } else {
2559ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2560ffe4fb16SHong Zhang   }
2561ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2562ffe4fb16SHong Zhang }
2563ffe4fb16SHong Zhang 
2564ffe4fb16SHong Zhang #undef __FUNCT__
2565ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25661302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2567ffe4fb16SHong Zhang {
2568ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2569dfbe8321SBarry Smith   PetscErrorCode ierr;
2570d05c616dSSatish Balay   PetscScalar    mone=-1.0;
25712798e883SHong Zhang   Vec            lvec1,bb1;
25722798e883SHong Zhang 
25732798e883SHong Zhang   PetscFunctionBegin;
257477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2575*521d7252SBarry Smith   if (matin->bs > 1)
25762798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25772798e883SHong Zhang 
2578c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25792798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2580bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25812798e883SHong Zhang       its--;
25822798e883SHong Zhang     }
25832798e883SHong Zhang 
25842798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25852798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25862798e883SHong Zhang     while (its--){
25872798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25882798e883SHong Zhang 
25892798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25902798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
25912798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
25922798e883SHong Zhang 
25932798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25942798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25952798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25962798e883SHong Zhang 
25972798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
25982798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
25992798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26002798e883SHong Zhang 
26012798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26022798e883SHong Zhang 
2603c14dc6b6SHong Zhang       /* diagonal sweep */
2604bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26052798e883SHong Zhang     }
26062798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26072798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2608c14dc6b6SHong Zhang   } else {
2609c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2610c14dc6b6SHong Zhang   }
26112798e883SHong Zhang   PetscFunctionReturn(0);
26122798e883SHong Zhang }
26132798e883SHong Zhang 
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