1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 10177431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1041302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 10777431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 1101302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1121302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 1181302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1201302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 1361302d50aSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 17777431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1801302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 18377431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 1861302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1881302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 1941302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1961302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 2121302d50aSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 2381302d50aSBarry Smith PetscInt i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 2621302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay 2794a2ae208SSatish Balay #undef __FUNCT__ 2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 2811302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 282a30f8f8cSSatish Balay { 283a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 284dfbe8321SBarry Smith PetscErrorCode ierr; 2851302d50aSBarry Smith PetscInt i,N = m*n; 286a30f8f8cSSatish Balay MatScalar *vsingle; 287a30f8f8cSSatish Balay 288a30f8f8cSSatish Balay PetscFunctionBegin; 2891302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 2904d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay 2934a2ae208SSatish Balay #undef __FUNCT__ 2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 2951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 296a30f8f8cSSatish Balay { 297a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 298dfbe8321SBarry Smith PetscErrorCode ierr; 2991302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 300a30f8f8cSSatish Balay MatScalar *vsingle; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay PetscFunctionBegin; 3031302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 3044d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay #endif 307a30f8f8cSSatish Balay 308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 309a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 310a30f8f8cSSatish Balay */ 3114a2ae208SSatish Balay #undef __FUNCT__ 312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 3131302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 314a30f8f8cSSatish Balay { 315a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 316a30f8f8cSSatish Balay MatScalar value; 317b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 318dfbe8321SBarry Smith PetscErrorCode ierr; 3191302d50aSBarry Smith PetscInt i,j,row,col; 3201302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 3211302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 322*521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 323a30f8f8cSSatish Balay 324a30f8f8cSSatish Balay /* Some Variables required in the macro */ 325a30f8f8cSSatish Balay Mat A = baij->A; 326a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 3271302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 328a30f8f8cSSatish Balay MatScalar *aa=a->a; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay Mat B = baij->B; 331a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 3321302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 333a30f8f8cSSatish Balay MatScalar *ba=b->a; 334a30f8f8cSSatish Balay 3351302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 3361302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 337a30f8f8cSSatish Balay MatScalar *ap,*bap; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay /* for stash */ 3401302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 341f65c83cfSHong Zhang MatScalar *v_loc=0; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay PetscFunctionBegin; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay if(!baij->donotstash){ 3461302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 34782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 348a30f8f8cSSatish Balay } 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay for (i=0; i<m; i++) { 351a30f8f8cSSatish Balay if (im[i] < 0) continue; 352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 35377431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 354a30f8f8cSSatish Balay #endif 355a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 356a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 357a30f8f8cSSatish Balay for (j=0; j<n; j++) { 358f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 359a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 360a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 361a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 362a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 36877431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 369a30f8f8cSSatish Balay #endif 370a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 371a30f8f8cSSatish Balay if (mat->was_assembled) { 372a30f8f8cSSatish Balay if (!baij->colmap) { 373653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 374a30f8f8cSSatish Balay } 375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 376a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37771730473SSatish Balay col = col - 1; 378a30f8f8cSSatish Balay #else 37971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 380a30f8f8cSSatish Balay #endif 381a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 382a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 383a30f8f8cSSatish Balay col = in[j]; 384a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 385a30f8f8cSSatish Balay B = baij->B; 386a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 387a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 388a30f8f8cSSatish Balay ba=b->a; 38971730473SSatish Balay } else col += in[j]%bs; 390a30f8f8cSSatish Balay } else col = in[j]; 391a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 392a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 393a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } else { /* off processor entry */ 397a30f8f8cSSatish Balay if (!baij->donotstash) { 398a30f8f8cSSatish Balay n_loc = 0; 399a30f8f8cSSatish Balay for (j=0; j<n; j++){ 400f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 401a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 402a30f8f8cSSatish Balay if (roworiented) { 403a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 404a30f8f8cSSatish Balay } else { 405a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay n_loc++; 408a30f8f8cSSatish Balay } 409a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 410a30f8f8cSSatish Balay } 411a30f8f8cSSatish Balay } 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay if(!baij->donotstash){ 415a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 4231302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 424a30f8f8cSSatish Balay { 4250880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 426f15d580aSBarry Smith const MatScalar *value; 427f15d580aSBarry Smith MatScalar *barray=baij->barray; 4280880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 429dfbe8321SBarry Smith PetscErrorCode ierr; 4301302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 4311302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 432*521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 4330880e062SHong Zhang 434a30f8f8cSSatish Balay PetscFunctionBegin; 4350880e062SHong Zhang if(!barray) { 4360880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4370880e062SHong Zhang baij->barray = barray; 4380880e062SHong Zhang } 4390880e062SHong Zhang 4400880e062SHong Zhang if (roworiented) { 4410880e062SHong Zhang stepval = (n-1)*bs; 4420880e062SHong Zhang } else { 4430880e062SHong Zhang stepval = (m-1)*bs; 4440880e062SHong Zhang } 4450880e062SHong Zhang for (i=0; i<m; i++) { 4460880e062SHong Zhang if (im[i] < 0) continue; 4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 44877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 4490880e062SHong Zhang #endif 4500880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4510880e062SHong Zhang row = im[i] - rstart; 4520880e062SHong Zhang for (j=0; j<n; j++) { 4530880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4540880e062SHong Zhang if ((roworiented) && (n == 1)) { 455f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4560880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 457f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4580880e062SHong Zhang } else { /* Here a copy is required */ 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4650880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4660880e062SHong Zhang *barray++ = *value++; 4670880e062SHong Zhang } 4680880e062SHong Zhang } 4690880e062SHong Zhang barray -=bs2; 4700880e062SHong Zhang } 4710880e062SHong Zhang 4720880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4730880e062SHong Zhang col = in[j] - cstart; 4740880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4750880e062SHong Zhang } 4760880e062SHong Zhang else if (in[j] < 0) continue; 4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 47877431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 4790880e062SHong Zhang #endif 4800880e062SHong Zhang else { 4810880e062SHong Zhang if (mat->was_assembled) { 4820880e062SHong Zhang if (!baij->colmap) { 483653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4840880e062SHong Zhang } 4850880e062SHong Zhang 4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4881302d50aSBarry Smith { PetscInt data; 4890880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4900880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4910880e062SHong Zhang } 4920880e062SHong Zhang #else 4930880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4940880e062SHong Zhang #endif 4950880e062SHong Zhang #endif 4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4970880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4980880e062SHong Zhang col = (col - 1)/bs; 4990880e062SHong Zhang #else 5000880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5010880e062SHong Zhang #endif 5020880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5030880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5040880e062SHong Zhang col = in[j]; 5050880e062SHong Zhang } 5060880e062SHong Zhang } 5070880e062SHong Zhang else col = in[j]; 508e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5090880e062SHong Zhang } 5100880e062SHong Zhang } 5110880e062SHong Zhang } else { 5120880e062SHong Zhang if (!baij->donotstash) { 5130880e062SHong Zhang if (roworiented) { 5140880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5150880e062SHong Zhang } else { 5160880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5170880e062SHong Zhang } 5180880e062SHong Zhang } 5190880e062SHong Zhang } 5200880e062SHong Zhang } 5210880e062SHong Zhang PetscFunctionReturn(0); 522a30f8f8cSSatish Balay } 523a30f8f8cSSatish Balay 524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 5251302d50aSBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 5261302d50aSBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5271302d50aSBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5284a2ae208SSatish Balay #undef __FUNCT__ 5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 5301302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 531a30f8f8cSSatish Balay { 532a30f8f8cSSatish Balay PetscFunctionBegin; 5331302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 53496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay 5374a2ae208SSatish Balay #undef __FUNCT__ 5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 5391302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 540a30f8f8cSSatish Balay { 541a30f8f8cSSatish Balay PetscFunctionBegin; 5421302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 54396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552*521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 5531302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 55777431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 55877431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 56277431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 56377431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data --; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay } else { 58529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay PetscFunctionReturn(0); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay 5914a2ae208SSatish Balay #undef __FUNCT__ 5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 594a30f8f8cSSatish Balay { 595a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 596dfbe8321SBarry Smith PetscErrorCode ierr; 597a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay PetscFunctionBegin; 600a30f8f8cSSatish Balay if (baij->size == 1) { 601a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 602a30f8f8cSSatish Balay } else { 603a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 604f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 605a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 607a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 608a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 609d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 610a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 611a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 612a30f8f8cSSatish Balay } else { 61329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 614a30f8f8cSSatish Balay } 615a30f8f8cSSatish Balay } 616a30f8f8cSSatish Balay PetscFunctionReturn(0); 617a30f8f8cSSatish Balay } 618a30f8f8cSSatish Balay 619a30f8f8cSSatish Balay /* 620a30f8f8cSSatish Balay Creates the hash table, and sets the table 621a30f8f8cSSatish Balay This table is created only once. 622a30f8f8cSSatish Balay If new entried need to be added to the matrix 623a30f8f8cSSatish Balay then the hash table has to be destroyed and 624a30f8f8cSSatish Balay recreated. 625a30f8f8cSSatish Balay */ 6264a2ae208SSatish Balay #undef __FUNCT__ 6274a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 628dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 629a30f8f8cSSatish Balay { 630a30f8f8cSSatish Balay PetscFunctionBegin; 6311302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 63296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 6354a2ae208SSatish Balay #undef __FUNCT__ 6364a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 637dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 638a30f8f8cSSatish Balay { 639a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 640dfbe8321SBarry Smith PetscErrorCode ierr; 6411302d50aSBarry Smith PetscInt nstash,reallocs; 642a30f8f8cSSatish Balay InsertMode addv; 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay PetscFunctionBegin; 645a30f8f8cSSatish Balay if (baij->donotstash) { 646a30f8f8cSSatish Balay PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 650a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 651a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 65229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 657a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 658a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 65977431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs); 660a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 66177431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs); 662a30f8f8cSSatish Balay PetscFunctionReturn(0); 663a30f8f8cSSatish Balay } 664a30f8f8cSSatish Balay 6654a2ae208SSatish Balay #undef __FUNCT__ 6664a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 667dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 668a30f8f8cSSatish Balay { 669a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 670a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 671a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6726849ba73SBarry Smith PetscErrorCode ierr; 6731302d50aSBarry Smith PetscInt i,j,rstart,ncols,n,flg,bs2=baij->bs2; 6741302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 675a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 676a30f8f8cSSatish Balay MatScalar *val; 677a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 678a30f8f8cSSatish Balay 679a30f8f8cSSatish Balay PetscFunctionBegin; 680a30f8f8cSSatish Balay 681a30f8f8cSSatish Balay if (!baij->donotstash) { 682a30f8f8cSSatish Balay while (1) { 683a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 684a30f8f8cSSatish Balay if (!flg) break; 685a30f8f8cSSatish Balay 686a30f8f8cSSatish Balay for (i=0; i<n;) { 687a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 688a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 689a30f8f8cSSatish Balay if (j < n) ncols = j-i; 690a30f8f8cSSatish Balay else ncols = n-i; 691a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 692a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 693a30f8f8cSSatish Balay i = j; 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 697a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 698a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 699a30f8f8cSSatish Balay restore the original flags */ 700a30f8f8cSSatish Balay r1 = baij->roworiented; 701a30f8f8cSSatish Balay r2 = a->roworiented; 702a30f8f8cSSatish Balay r3 = b->roworiented; 703a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 704a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 705a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 706a30f8f8cSSatish Balay while (1) { 707a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 708a30f8f8cSSatish Balay if (!flg) break; 709a30f8f8cSSatish Balay 710a30f8f8cSSatish Balay for (i=0; i<n;) { 711a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 712a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 713a30f8f8cSSatish Balay if (j < n) ncols = j-i; 714a30f8f8cSSatish Balay else ncols = n-i; 715a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 716a30f8f8cSSatish Balay i = j; 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 720a30f8f8cSSatish Balay baij->roworiented = r1; 721a30f8f8cSSatish Balay a->roworiented = r2; 722a30f8f8cSSatish Balay b->roworiented = r3; 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay 725a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 726a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 727a30f8f8cSSatish Balay 728a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 729a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 730a30f8f8cSSatish Balay /* 731a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 732a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 733a30f8f8cSSatish Balay */ 734a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 735a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 736a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 737c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay 741a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 74240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 745a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 748a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 749f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 750a30f8f8cSSatish Balay baij->ht_total_ct = 0; 751a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay #endif 754a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 755c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 756a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 757a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 758a30f8f8cSSatish Balay } 759a30f8f8cSSatish Balay 760a30f8f8cSSatish Balay if (baij->rowvalues) { 761a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 762a30f8f8cSSatish Balay baij->rowvalues = 0; 763a30f8f8cSSatish Balay } 7645222a1afSHong Zhang 765a30f8f8cSSatish Balay PetscFunctionReturn(0); 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 7684a2ae208SSatish Balay #undef __FUNCT__ 7694a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7706849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 771a30f8f8cSSatish Balay { 772a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 773dfbe8321SBarry Smith PetscErrorCode ierr; 774*521d7252SBarry Smith PetscInt bs = mat->bs; 7751302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 77632077d6dSBarry Smith PetscTruth iascii,isdraw; 777b0a32e0cSBarry Smith PetscViewer sviewer; 778f3ef73ceSBarry Smith PetscViewerFormat format; 779a30f8f8cSSatish Balay 780a30f8f8cSSatish Balay PetscFunctionBegin; 78132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 782fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 78332077d6dSBarry Smith if (iascii) { 784b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 785456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 786a30f8f8cSSatish Balay MatInfo info; 787a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 78977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 79077431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 791*521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 792a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 79377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 794a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 79577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 796b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 797a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 798a30f8f8cSSatish Balay PetscFunctionReturn(0); 799fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 80077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 801a30f8f8cSSatish Balay PetscFunctionReturn(0); 802a30f8f8cSSatish Balay } 803a30f8f8cSSatish Balay } 804a30f8f8cSSatish Balay 805a30f8f8cSSatish Balay if (isdraw) { 806b0a32e0cSBarry Smith PetscDraw draw; 807a30f8f8cSSatish Balay PetscTruth isnull; 808b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 809b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 810a30f8f8cSSatish Balay } 811a30f8f8cSSatish Balay 812a30f8f8cSSatish Balay if (size == 1) { 813e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 815a30f8f8cSSatish Balay } else { 816a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 817a30f8f8cSSatish Balay Mat A; 81865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 81965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 8201302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 821a30f8f8cSSatish Balay MatScalar *a; 822a30f8f8cSSatish Balay 823f204ca49SKris Buschelman /* Should this be the same type as mat? */ 824a30f8f8cSSatish Balay if (!rank) { 825f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 826a30f8f8cSSatish Balay } else { 827f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 828a30f8f8cSSatish Balay } 829f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 830*521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 831b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 832a30f8f8cSSatish Balay 833a30f8f8cSSatish Balay /* copy over the A part */ 83465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 835a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 8361302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 837a30f8f8cSSatish Balay 838a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 839a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 840a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 841a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 842a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 843a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 844a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 845a30f8f8cSSatish Balay col++; a += bs; 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay /* copy over the B part */ 85065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 852a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 853a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 854a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 855a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 856a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 857a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 858a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 859a30f8f8cSSatish Balay col++; a += bs; 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 864a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 865a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 866a30f8f8cSSatish Balay /* 867a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 868b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 869a30f8f8cSSatish Balay */ 870b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 87165d70643SHong Zhang if (!rank) { 872e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 873a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 874a30f8f8cSSatish Balay } 875b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 876a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 877a30f8f8cSSatish Balay } 878a30f8f8cSSatish Balay PetscFunctionReturn(0); 879a30f8f8cSSatish Balay } 880a30f8f8cSSatish Balay 8814a2ae208SSatish Balay #undef __FUNCT__ 8824a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 883dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 884a30f8f8cSSatish Balay { 885dfbe8321SBarry Smith PetscErrorCode ierr; 88632077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 887a30f8f8cSSatish Balay 888a30f8f8cSSatish Balay PetscFunctionBegin; 88932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 890fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 891b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 892fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 89332077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 894a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 895a30f8f8cSSatish Balay } else { 8961302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 897a30f8f8cSSatish Balay } 898a30f8f8cSSatish Balay PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay 9014a2ae208SSatish Balay #undef __FUNCT__ 9024a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 903dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 904a30f8f8cSSatish Balay { 905a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 906dfbe8321SBarry Smith PetscErrorCode ierr; 907a30f8f8cSSatish Balay 908a30f8f8cSSatish Balay PetscFunctionBegin; 909a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 91077431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 911a30f8f8cSSatish Balay #endif 912a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 913a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 914a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 915a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 916a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 917a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 918a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 919a30f8f8cSSatish Balay #else 920a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 921a30f8f8cSSatish Balay #endif 922a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 923a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 924a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 92540781036SHong Zhang if (baij->slvec0) { 92640781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 92740781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 92840781036SHong Zhang } 92940781036SHong Zhang if (baij->slvec1) { 93040781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 93140781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 93240781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 93340781036SHong Zhang } 93440781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 935a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 937a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 938a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 939a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 940a30f8f8cSSatish Balay #endif 941a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 942901853e0SKris Buschelman 943901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 944901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 945901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 946901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 947a30f8f8cSSatish Balay PetscFunctionReturn(0); 948a30f8f8cSSatish Balay } 949a30f8f8cSSatish Balay 9504a2ae208SSatish Balay #undef __FUNCT__ 951a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 952dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 953a9d4b620SHong Zhang { 954a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 955dfbe8321SBarry Smith PetscErrorCode ierr; 956*521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 957a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 958a9d4b620SHong Zhang 959a9d4b620SHong Zhang PetscFunctionBegin; 960a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 961a9d4b620SHong Zhang if (nt != A->n) { 962a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 963a9d4b620SHong Zhang } 964a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 965a9d4b620SHong Zhang if (nt != A->m) { 966a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 967a9d4b620SHong Zhang } 968a9d4b620SHong Zhang 969a9d4b620SHong Zhang /* diagonal part */ 970a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 971a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 972a9d4b620SHong Zhang 973a9d4b620SHong Zhang /* subdiagonal part */ 974a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 975a9d4b620SHong Zhang 976a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9771ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9781ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 979a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9801ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 981a9d4b620SHong Zhang 982a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9831ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 984a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 985a9d4b620SHong Zhang 986a9d4b620SHong Zhang /* supperdiagonal part */ 987a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 988a9d4b620SHong Zhang 989a9d4b620SHong Zhang PetscFunctionReturn(0); 990a9d4b620SHong Zhang } 991a9d4b620SHong Zhang 992a9d4b620SHong Zhang #undef __FUNCT__ 99340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 994dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 995a30f8f8cSSatish Balay { 996a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 997dfbe8321SBarry Smith PetscErrorCode ierr; 9981302d50aSBarry Smith PetscInt nt; 999a30f8f8cSSatish Balay 1000a30f8f8cSSatish Balay PetscFunctionBegin; 1001a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1002b5df2d14SHong Zhang if (nt != A->n) { 100329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1004a30f8f8cSSatish Balay } 1005a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1006b5df2d14SHong Zhang if (nt != A->m) { 100729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1008a30f8f8cSSatish Balay } 100965d70643SHong Zhang 1010b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1011b941877fSHong Zhang /* do diagonal part */ 1012b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1013b941877fSHong Zhang /* do supperdiagonal part */ 1014b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1015b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1016b941877fSHong Zhang /* do subdiagonal part */ 1017b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1018b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1019b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 102065d70643SHong Zhang 1021a30f8f8cSSatish Balay PetscFunctionReturn(0); 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay 10244a2ae208SSatish Balay #undef __FUNCT__ 10254a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1026dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1027a30f8f8cSSatish Balay { 1028de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1029dfbe8321SBarry Smith PetscErrorCode ierr; 1030*521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 1031a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1032a9d4b620SHong Zhang 1033a9d4b620SHong Zhang PetscFunctionBegin; 1034a9d4b620SHong Zhang /* 103556faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 103656faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1037a9d4b620SHong Zhang */ 1038a9d4b620SHong Zhang /* diagonal part */ 1039a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1040a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1041a9d4b620SHong Zhang 1042a9d4b620SHong Zhang /* subdiagonal part */ 1043a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1044a9d4b620SHong Zhang 1045a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10461ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10471ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1048a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10491ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1050a9d4b620SHong Zhang 1051a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10521ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1053a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1054a9d4b620SHong Zhang 1055a9d4b620SHong Zhang /* supperdiagonal part */ 1056a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1057a9d4b620SHong Zhang 1058a9d4b620SHong Zhang PetscFunctionReturn(0); 1059a9d4b620SHong Zhang } 1060a9d4b620SHong Zhang 1061a9d4b620SHong Zhang #undef __FUNCT__ 1062a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1063dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1064a9d4b620SHong Zhang { 1065a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1066dfbe8321SBarry Smith PetscErrorCode ierr; 1067a30f8f8cSSatish Balay 1068a30f8f8cSSatish Balay PetscFunctionBegin; 1069b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1070b941877fSHong Zhang /* do diagonal part */ 1071b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1072b941877fSHong Zhang /* do supperdiagonal part */ 1073b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1074de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1075de8b6608SHong Zhang 1076b941877fSHong Zhang /* do subdiagonal part */ 1077a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1078a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1079a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1080aa482183SHong Zhang 1081a30f8f8cSSatish Balay PetscFunctionReturn(0); 1082a30f8f8cSSatish Balay } 1083a30f8f8cSSatish Balay 10844a2ae208SSatish Balay #undef __FUNCT__ 10854a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1086dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1087a30f8f8cSSatish Balay { 1088dfbe8321SBarry Smith PetscErrorCode ierr; 10895a7c0312SHong Zhang 1090a30f8f8cSSatish Balay PetscFunctionBegin; 10915a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10925a7c0312SHong Zhang PetscFunctionReturn(0); 1093a30f8f8cSSatish Balay } 1094a30f8f8cSSatish Balay 10954a2ae208SSatish Balay #undef __FUNCT__ 10964a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1097dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1098a30f8f8cSSatish Balay { 1099dfbe8321SBarry Smith PetscErrorCode ierr; 11005a7c0312SHong Zhang 1101a30f8f8cSSatish Balay PetscFunctionBegin; 11025a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 11035a7c0312SHong Zhang PetscFunctionReturn(0); 1104a30f8f8cSSatish Balay } 1105a30f8f8cSSatish Balay 1106a30f8f8cSSatish Balay /* 1107a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1108a30f8f8cSSatish Balay diagonal block 1109a30f8f8cSSatish Balay */ 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1112dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1115dfbe8321SBarry Smith PetscErrorCode ierr; 1116a30f8f8cSSatish Balay 1117a30f8f8cSSatish Balay PetscFunctionBegin; 111829bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1119a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1120a30f8f8cSSatish Balay PetscFunctionReturn(0); 1121a30f8f8cSSatish Balay } 1122a30f8f8cSSatish Balay 11234a2ae208SSatish Balay #undef __FUNCT__ 11244a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1125dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1126a30f8f8cSSatish Balay { 1127a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128dfbe8321SBarry Smith PetscErrorCode ierr; 1129a30f8f8cSSatish Balay 1130a30f8f8cSSatish Balay PetscFunctionBegin; 1131a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1132a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1133a30f8f8cSSatish Balay PetscFunctionReturn(0); 1134a30f8f8cSSatish Balay } 1135a30f8f8cSSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11381302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1139a30f8f8cSSatish Balay { 1140a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 114187828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 11426849ba73SBarry Smith PetscErrorCode ierr; 1143*521d7252SBarry Smith PetscInt bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 11441302d50aSBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 11451302d50aSBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1146a30f8f8cSSatish Balay 1147a30f8f8cSSatish Balay PetscFunctionBegin; 114829bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1149a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1152a30f8f8cSSatish Balay /* 1153a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1154a30f8f8cSSatish Balay */ 1155a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1156a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 11571302d50aSBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1158a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1159a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1160a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1161a30f8f8cSSatish Balay } 11621302d50aSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 11631302d50aSBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1164a30f8f8cSSatish Balay } 1165a30f8f8cSSatish Balay 116629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1167a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1168a30f8f8cSSatish Balay 1169a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1170a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1171a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1172a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1173a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay nztot = nzA + nzB; 1175a30f8f8cSSatish Balay 1176a30f8f8cSSatish Balay cmap = mat->garray; 1177a30f8f8cSSatish Balay if (v || idx) { 1178a30f8f8cSSatish Balay if (nztot) { 1179a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 11801302d50aSBarry Smith PetscInt imark = -1; 1181a30f8f8cSSatish Balay if (v) { 1182a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1183a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1184a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1185a30f8f8cSSatish Balay else break; 1186a30f8f8cSSatish Balay } 1187a30f8f8cSSatish Balay imark = i; 1188a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1189a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay if (idx) { 1192a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1193a30f8f8cSSatish Balay if (imark > -1) { 1194a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1195a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1196a30f8f8cSSatish Balay } 1197a30f8f8cSSatish Balay } else { 1198a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1199a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1200a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1201a30f8f8cSSatish Balay else break; 1202a30f8f8cSSatish Balay } 1203a30f8f8cSSatish Balay imark = i; 1204a30f8f8cSSatish Balay } 1205a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1206a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1207a30f8f8cSSatish Balay } 1208a30f8f8cSSatish Balay } else { 1209a30f8f8cSSatish Balay if (idx) *idx = 0; 1210a30f8f8cSSatish Balay if (v) *v = 0; 1211a30f8f8cSSatish Balay } 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay *nz = nztot; 1214a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1215a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1216a30f8f8cSSatish Balay PetscFunctionReturn(0); 1217a30f8f8cSSatish Balay } 1218a30f8f8cSSatish Balay 12194a2ae208SSatish Balay #undef __FUNCT__ 12204a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12211302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1222a30f8f8cSSatish Balay { 1223a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1224a30f8f8cSSatish Balay 1225a30f8f8cSSatish Balay PetscFunctionBegin; 1226a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 122729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1228a30f8f8cSSatish Balay } 1229a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1230a30f8f8cSSatish Balay PetscFunctionReturn(0); 1231a30f8f8cSSatish Balay } 1232a30f8f8cSSatish Balay 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1235dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1236a30f8f8cSSatish Balay { 1237a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1238dfbe8321SBarry Smith PetscErrorCode ierr; 1239a30f8f8cSSatish Balay 1240a30f8f8cSSatish Balay PetscFunctionBegin; 1241a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1242a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1243a30f8f8cSSatish Balay PetscFunctionReturn(0); 1244a30f8f8cSSatish Balay } 1245a30f8f8cSSatish Balay 12464a2ae208SSatish Balay #undef __FUNCT__ 12474a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1248dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1249a30f8f8cSSatish Balay { 1250a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1251a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1252dfbe8321SBarry Smith PetscErrorCode ierr; 1253a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1254a30f8f8cSSatish Balay 1255a30f8f8cSSatish Balay PetscFunctionBegin; 1256*521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1257a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1258a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1259a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1260a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1262a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1263a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1264a30f8f8cSSatish Balay info->nz_used = isend[0]; 1265a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1266a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1267a30f8f8cSSatish Balay info->memory = isend[3]; 1268a30f8f8cSSatish Balay info->mallocs = isend[4]; 1269a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1270d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1271a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1272a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1273a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1274a30f8f8cSSatish Balay info->memory = irecv[3]; 1275a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1276a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1277d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1278a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1279a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1280a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1281a30f8f8cSSatish Balay info->memory = irecv[3]; 1282a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1283a30f8f8cSSatish Balay } else { 128477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1285a30f8f8cSSatish Balay } 1286f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1287f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1288f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1289f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1290a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1291a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1292a30f8f8cSSatish Balay info->factor_mallocs = 0; 1293a30f8f8cSSatish Balay PetscFunctionReturn(0); 1294a30f8f8cSSatish Balay } 1295a30f8f8cSSatish Balay 12964a2ae208SSatish Balay #undef __FUNCT__ 12974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1298dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1299a30f8f8cSSatish Balay { 1300a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1301dfbe8321SBarry Smith PetscErrorCode ierr; 1302a30f8f8cSSatish Balay 1303a30f8f8cSSatish Balay PetscFunctionBegin; 1304e98b92d7SKris Buschelman switch (op) { 1305e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1306e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1307e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1308e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1309e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1310e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1311e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1312a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1313a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1314e98b92d7SKris Buschelman break; 1315e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1316a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1317a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1319e98b92d7SKris Buschelman break; 1320e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1321e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1322e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1323b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1324e98b92d7SKris Buschelman break; 1325e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1326a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1327a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1328a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1329e98b92d7SKris Buschelman break; 1330e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1331a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1332e98b92d7SKris Buschelman break; 1333e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 133429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1335e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1336a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1337e98b92d7SKris Buschelman break; 13389a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13399a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13409a4540c5SBarry Smith case MAT_HERMITIAN: 13419a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 134277e54ba9SKris Buschelman case MAT_SYMMETRIC: 134377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13449a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13459a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13469a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 134777e54ba9SKris Buschelman break; 1348e98b92d7SKris Buschelman default: 134929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1350a30f8f8cSSatish Balay } 1351a30f8f8cSSatish Balay PetscFunctionReturn(0); 1352a30f8f8cSSatish Balay } 1353a30f8f8cSSatish Balay 13544a2ae208SSatish Balay #undef __FUNCT__ 13558115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1356dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1357a30f8f8cSSatish Balay { 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359a30f8f8cSSatish Balay PetscFunctionBegin; 1360999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13618115998fSBarry Smith PetscFunctionReturn(0); 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay 13644a2ae208SSatish Balay #undef __FUNCT__ 13654a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1366dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1367a30f8f8cSSatish Balay { 1368a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1369a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1370dfbe8321SBarry Smith PetscErrorCode ierr; 13711302d50aSBarry Smith PetscInt s1,s2,s3; 1372a30f8f8cSSatish Balay 1373a30f8f8cSSatish Balay PetscFunctionBegin; 1374a30f8f8cSSatish Balay if (ll != rr) { 137529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1376a30f8f8cSSatish Balay } 1377a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1378a30f8f8cSSatish Balay if (rr) { 1379a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138029bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1381a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1382a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay /*} if (ll) { */ 1384a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 138529bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1386a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1387a30f8f8cSSatish Balay /* } */ 1388a30f8f8cSSatish Balay /* scale the diagonal block */ 1389a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1390a30f8f8cSSatish Balay 1391a30f8f8cSSatish Balay /* if (rr) { */ 1392a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1393a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay } 1396a30f8f8cSSatish Balay 1397a30f8f8cSSatish Balay PetscFunctionReturn(0); 1398a30f8f8cSSatish Balay } 1399a30f8f8cSSatish Balay 14004a2ae208SSatish Balay #undef __FUNCT__ 14014a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1402dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1403a30f8f8cSSatish Balay { 1404a30f8f8cSSatish Balay PetscFunctionBegin; 1405c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1406a30f8f8cSSatish Balay } 1407a30f8f8cSSatish Balay 14084a2ae208SSatish Balay #undef __FUNCT__ 14094a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1410dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1411a30f8f8cSSatish Balay { 1412a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1413a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 14141302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1415dfbe8321SBarry Smith PetscErrorCode ierr; 1416a30f8f8cSSatish Balay 1417a30f8f8cSSatish Balay PetscFunctionBegin; 1418a30f8f8cSSatish Balay if (!a->rank) { 1419a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1420a30f8f8cSSatish Balay } 14211302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1422a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1423a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1424a30f8f8cSSatish Balay PetscFunctionReturn(0); 1425a30f8f8cSSatish Balay } 1426a30f8f8cSSatish Balay 14274a2ae208SSatish Balay #undef __FUNCT__ 14284a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1429dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1430a30f8f8cSSatish Balay { 1431f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1432dfbe8321SBarry Smith PetscErrorCode ierr; 1433a30f8f8cSSatish Balay 1434a30f8f8cSSatish Balay PetscFunctionBegin; 1435a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1436a30f8f8cSSatish Balay PetscFunctionReturn(0); 1437a30f8f8cSSatish Balay } 1438a30f8f8cSSatish Balay 14396849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1440a30f8f8cSSatish Balay 14414a2ae208SSatish Balay #undef __FUNCT__ 14424a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1443dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1444a30f8f8cSSatish Balay { 1445a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1446a30f8f8cSSatish Balay Mat a,b,c,d; 1447a30f8f8cSSatish Balay PetscTruth flg; 1448dfbe8321SBarry Smith PetscErrorCode ierr; 1449a30f8f8cSSatish Balay 1450a30f8f8cSSatish Balay PetscFunctionBegin; 1451a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1452a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1453a30f8f8cSSatish Balay 1454a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1455a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1456a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1457a30f8f8cSSatish Balay } 1458a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1459a30f8f8cSSatish Balay PetscFunctionReturn(0); 1460a30f8f8cSSatish Balay } 1461a30f8f8cSSatish Balay 14624a2ae208SSatish Balay #undef __FUNCT__ 14634a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1464dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1465273d9f13SBarry Smith { 1466dfbe8321SBarry Smith PetscErrorCode ierr; 1467273d9f13SBarry Smith 1468273d9f13SBarry Smith PetscFunctionBegin; 1469273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1470273d9f13SBarry Smith PetscFunctionReturn(0); 1471273d9f13SBarry Smith } 1472a5e6ed63SBarry Smith 1473a5e6ed63SBarry Smith #undef __FUNCT__ 1474a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14751302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1476a5e6ed63SBarry Smith { 14776849ba73SBarry Smith PetscErrorCode ierr; 14781302d50aSBarry Smith PetscInt i; 1479a5e6ed63SBarry Smith PetscTruth flg; 1480a5e6ed63SBarry Smith 14816849ba73SBarry Smith PetscFunctionBegin; 1482a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1483a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1484a5e6ed63SBarry Smith if (!flg) { 14851302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1486a5e6ed63SBarry Smith } 1487a5e6ed63SBarry Smith } 1488a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1489a5e6ed63SBarry Smith PetscFunctionReturn(0); 1490a5e6ed63SBarry Smith } 1491a5e6ed63SBarry Smith 1492a5e6ed63SBarry Smith 1493a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1494a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1495a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1496a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1497a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1498a9d4b620SHong Zhang MatMult_MPISBAIJ, 149997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1500a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1501a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 150597304618SKris Buschelman /*10*/ 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 15082798e883SHong Zhang MatRelax_MPISBAIJ, 1509a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 151097304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1511a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1512a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1513a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1514a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 151597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1516a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1519a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 152097304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 152597304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1526b5df2d14SHong Zhang 0, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 153097304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay 0, 153597304618SKris Buschelman /*40*/ 0, 1536a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1537d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1538a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1539a30f8f8cSSatish Balay 0, 154097304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1541a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 1545*521d7252SBarry Smith /*50*/ 0, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay 0, 1548a30f8f8cSSatish Balay 0, 1549a30f8f8cSSatish Balay 0, 155097304618SKris Buschelman /*55*/ 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1553a30f8f8cSSatish Balay 0, 1554a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 155597304618SKris Buschelman /*60*/ 0, 1556a30f8f8cSSatish Balay 0, 1557a30f8f8cSSatish Balay 0, 15588a124369SBarry Smith MatGetPetscMaps_Petsc, 155924d5174aSHong Zhang 0, 156097304618SKris Buschelman /*65*/ 0, 156124d5174aSHong Zhang 0, 156224d5174aSHong Zhang 0, 156324d5174aSHong Zhang 0, 156424d5174aSHong Zhang 0, 156597304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 156624d5174aSHong Zhang 0, 156797304618SKris Buschelman 0, 156897304618SKris Buschelman 0, 156997304618SKris Buschelman 0, 157097304618SKris Buschelman /*75*/ 0, 157197304618SKris Buschelman 0, 157297304618SKris Buschelman 0, 157397304618SKris Buschelman 0, 157497304618SKris Buschelman 0, 157597304618SKris Buschelman /*80*/ 0, 157697304618SKris Buschelman 0, 157797304618SKris Buschelman 0, 157897304618SKris Buschelman 0, 1579865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1580865e5f61SKris Buschelman /*85*/ 0, 1581865e5f61SKris Buschelman 0, 1582865e5f61SKris Buschelman 0, 1583865e5f61SKris Buschelman 0, 1584865e5f61SKris Buschelman 0, 1585865e5f61SKris Buschelman /*90*/ 0, 1586865e5f61SKris Buschelman 0, 1587865e5f61SKris Buschelman 0, 1588865e5f61SKris Buschelman 0, 1589865e5f61SKris Buschelman 0, 1590865e5f61SKris Buschelman /*95*/ 0, 1591865e5f61SKris Buschelman 0, 1592865e5f61SKris Buschelman 0, 1593865e5f61SKris Buschelman 0}; 1594a30f8f8cSSatish Balay 1595a30f8f8cSSatish Balay 1596a30f8f8cSSatish Balay EXTERN_C_BEGIN 15974a2ae208SSatish Balay #undef __FUNCT__ 15984a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1599dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1600a30f8f8cSSatish Balay { 1601a30f8f8cSSatish Balay PetscFunctionBegin; 1602a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1603a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1604a30f8f8cSSatish Balay PetscFunctionReturn(0); 1605a30f8f8cSSatish Balay } 1606a30f8f8cSSatish Balay EXTERN_C_END 1607a30f8f8cSSatish Balay 1608273d9f13SBarry Smith EXTERN_C_BEGIN 16094a2ae208SSatish Balay #undef __FUNCT__ 1610a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 16111302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1612a23d5eceSKris Buschelman { 1613a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1614dfbe8321SBarry Smith PetscErrorCode ierr; 16151302d50aSBarry Smith PetscInt i,mbs,Mbs; 1616a23d5eceSKris Buschelman 1617a23d5eceSKris Buschelman PetscFunctionBegin; 1618a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1619a23d5eceSKris Buschelman 1620a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1621a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1622a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 162377431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 162477431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1625a23d5eceSKris Buschelman if (d_nnz) { 1626a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 162777431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1628a23d5eceSKris Buschelman } 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman if (o_nnz) { 1631a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 163277431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1633a23d5eceSKris Buschelman } 1634a23d5eceSKris Buschelman } 1635a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1636a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1637a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1638a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1639a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1640a23d5eceSKris Buschelman 1641a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1642a23d5eceSKris Buschelman mbs = B->m/bs; 1643a23d5eceSKris Buschelman Mbs = B->M/bs; 1644a23d5eceSKris Buschelman if (mbs*bs != B->m) { 164577431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1646a23d5eceSKris Buschelman } 1647a23d5eceSKris Buschelman 1648*521d7252SBarry Smith B->bs = bs; 1649a23d5eceSKris Buschelman b->bs2 = bs*bs; 1650a23d5eceSKris Buschelman b->mbs = mbs; 1651a23d5eceSKris Buschelman b->nbs = mbs; 1652a23d5eceSKris Buschelman b->Mbs = Mbs; 1653a23d5eceSKris Buschelman b->Nbs = Mbs; 1654a23d5eceSKris Buschelman 1655a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1656a23d5eceSKris Buschelman b->rowners[0] = 0; 1657a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1658a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1659a23d5eceSKris Buschelman } 1660a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1661a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1662a23d5eceSKris Buschelman b->cstart = b->rstart; 1663a23d5eceSKris Buschelman b->cend = b->rend; 1664a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1665a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1666a23d5eceSKris Buschelman } 1667a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1668a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1669a23d5eceSKris Buschelman 1670a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1671a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1672a23d5eceSKris Buschelman 16739c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16749c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1675c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16769c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 16779c097c71SKris Buschelman 16789c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 16794aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1680589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 16819c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1682a23d5eceSKris Buschelman 1683a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1684a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1685a23d5eceSKris Buschelman 1686a23d5eceSKris Buschelman PetscFunctionReturn(0); 1687a23d5eceSKris Buschelman } 1688a23d5eceSKris Buschelman EXTERN_C_END 1689a23d5eceSKris Buschelman 16900bad9183SKris Buschelman /*MC 1691fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16920bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16930bad9183SKris Buschelman 16940bad9183SKris Buschelman Options Database Keys: 16950bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16960bad9183SKris Buschelman 16970bad9183SKris Buschelman Level: beginner 16980bad9183SKris Buschelman 16990bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17000bad9183SKris Buschelman M*/ 17010bad9183SKris Buschelman 1702a23d5eceSKris Buschelman EXTERN_C_BEGIN 1703a23d5eceSKris Buschelman #undef __FUNCT__ 17044a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1705dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1706b5df2d14SHong Zhang { 1707b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1708dfbe8321SBarry Smith PetscErrorCode ierr; 1709b5df2d14SHong Zhang PetscTruth flg; 1710b5df2d14SHong Zhang 1711b5df2d14SHong Zhang PetscFunctionBegin; 1712b5df2d14SHong Zhang 1713b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1714b0a32e0cSBarry Smith B->data = (void*)b; 1715b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1716b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1717b5df2d14SHong Zhang 1718b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1719b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1720b5df2d14SHong Zhang B->mapping = 0; 1721b5df2d14SHong Zhang B->factor = 0; 1722b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1723b5df2d14SHong Zhang 1724b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1725b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1726b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1727b5df2d14SHong Zhang 1728b5df2d14SHong Zhang /* build local table of row and column ownerships */ 17291302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1730273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1731273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 17321302d50aSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1733b5df2d14SHong Zhang 1734b5df2d14SHong Zhang /* build cache for off array entries formed */ 1735b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1736b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1737b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1738b5df2d14SHong Zhang b->garray = PETSC_NULL; 1739b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1740b5df2d14SHong Zhang 1741f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1742b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 174364a35ccbSBarry Smith b->setvalueslen = 0; 1744b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1745b5df2d14SHong Zhang #endif 1746b5df2d14SHong Zhang 1747b5df2d14SHong Zhang /* stuff used in block assembly */ 1748b5df2d14SHong Zhang b->barray = 0; 1749b5df2d14SHong Zhang 1750b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1751b5df2d14SHong Zhang b->lvec = 0; 1752b5df2d14SHong Zhang b->Mvctx = 0; 175340781036SHong Zhang b->slvec0 = 0; 175440781036SHong Zhang b->slvec0b = 0; 175540781036SHong Zhang b->slvec1 = 0; 175640781036SHong Zhang b->slvec1a = 0; 175740781036SHong Zhang b->slvec1b = 0; 175840781036SHong Zhang b->sMvctx = 0; 1759b5df2d14SHong Zhang 1760b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1761b5df2d14SHong Zhang b->rowindices = 0; 1762b5df2d14SHong Zhang b->rowvalues = 0; 1763b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1764b5df2d14SHong Zhang 1765b5df2d14SHong Zhang /* hash table stuff */ 1766b5df2d14SHong Zhang b->ht = 0; 1767b5df2d14SHong Zhang b->hd = 0; 1768b5df2d14SHong Zhang b->ht_size = 0; 1769b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1770b5df2d14SHong Zhang b->ht_fact = 0; 1771b5df2d14SHong Zhang b->ht_total_ct = 0; 1772b5df2d14SHong Zhang b->ht_insert_ct = 0; 1773b5df2d14SHong Zhang 1774e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1775b5df2d14SHong Zhang if (flg) { 1776f6275e2eSBarry Smith PetscReal fact = 1.39; 1777b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1778e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1779b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1780b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1781b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1782b5df2d14SHong Zhang } 1783b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1784b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1785b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1786b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1787b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1788b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1789b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1790b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1791b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1792a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1793a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1794a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 179523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 179623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 179723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 179823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1799b5df2d14SHong Zhang PetscFunctionReturn(0); 1800b5df2d14SHong Zhang } 1801273d9f13SBarry Smith EXTERN_C_END 1802b5df2d14SHong Zhang 1803209238afSKris Buschelman /*MC 1804002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1805209238afSKris Buschelman 1806209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1807209238afSKris Buschelman and MATMPISBAIJ otherwise. 1808209238afSKris Buschelman 1809209238afSKris Buschelman Options Database Keys: 1810209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1811209238afSKris Buschelman 1812209238afSKris Buschelman Level: beginner 1813209238afSKris Buschelman 1814209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1815209238afSKris Buschelman M*/ 1816209238afSKris Buschelman 1817209238afSKris Buschelman EXTERN_C_BEGIN 1818209238afSKris Buschelman #undef __FUNCT__ 1819209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1820dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1821dfbe8321SBarry Smith { 18226849ba73SBarry Smith PetscErrorCode ierr; 18231302d50aSBarry Smith PetscMPIInt size; 1824209238afSKris Buschelman 1825209238afSKris Buschelman PetscFunctionBegin; 1826209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1827209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1828209238afSKris Buschelman if (size == 1) { 1829209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1830209238afSKris Buschelman } else { 1831209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1832209238afSKris Buschelman } 1833209238afSKris Buschelman PetscFunctionReturn(0); 1834209238afSKris Buschelman } 1835209238afSKris Buschelman EXTERN_C_END 1836209238afSKris Buschelman 18374a2ae208SSatish Balay #undef __FUNCT__ 18384a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1839b5df2d14SHong Zhang /*@C 1840b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1841b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1842b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1843b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang Collective on Mat 1846b5df2d14SHong Zhang 1847b5df2d14SHong Zhang Input Parameters: 1848b5df2d14SHong Zhang + A - the matrix 1849b5df2d14SHong Zhang . bs - size of blockk 1850b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1851b5df2d14SHong Zhang submatrix (same for all local rows) 1852b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18536d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18546d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18556d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1856b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1857b5df2d14SHong Zhang submatrix (same for all local rows). 1858b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1859b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1860b5df2d14SHong Zhang each block row) or PETSC_NULL. 1861b5df2d14SHong Zhang 1862b5df2d14SHong Zhang 1863b5df2d14SHong Zhang Options Database Keys: 1864b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1865b5df2d14SHong Zhang block calculations (much slower) 1866b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang Notes: 1869b5df2d14SHong Zhang 1870b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1871b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1872b5df2d14SHong Zhang 1873b5df2d14SHong Zhang Storage Information: 1874b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1875b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1876b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1877b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1878b5df2d14SHong Zhang 1879b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1880b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1881b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1882b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1883b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1884b5df2d14SHong Zhang 1885b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1886b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1887b5df2d14SHong Zhang 1888b5df2d14SHong Zhang .vb 1889b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1890b5df2d14SHong Zhang ------------------- 1891b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1892b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1893b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1894b5df2d14SHong Zhang ------------------- 1895b5df2d14SHong Zhang .ve 1896b5df2d14SHong Zhang 1897b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1898b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18996d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19006d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1901b5df2d14SHong Zhang 19026d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19036d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1904b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1905b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1906b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1907b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1908b5df2d14SHong Zhang matrices. 1909b5df2d14SHong Zhang 1910b5df2d14SHong Zhang Level: intermediate 1911b5df2d14SHong Zhang 1912b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1913b5df2d14SHong Zhang 1914b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1915b5df2d14SHong Zhang @*/ 19161302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1917b5df2d14SHong Zhang { 19181302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1919b5df2d14SHong Zhang 1920b5df2d14SHong Zhang PetscFunctionBegin; 1921a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1922a23d5eceSKris Buschelman if (f) { 1923a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1924b5df2d14SHong Zhang } 1925b5df2d14SHong Zhang PetscFunctionReturn(0); 1926b5df2d14SHong Zhang } 1927b5df2d14SHong Zhang 19284a2ae208SSatish Balay #undef __FUNCT__ 19294a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1930a30f8f8cSSatish Balay /*@C 1931a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1932a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1933a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1934a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1935a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1936a30f8f8cSSatish Balay 1937a30f8f8cSSatish Balay Collective on MPI_Comm 1938a30f8f8cSSatish Balay 1939a30f8f8cSSatish Balay Input Parameters: 1940a30f8f8cSSatish Balay + comm - MPI communicator 1941a30f8f8cSSatish Balay . bs - size of blockk 1942a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1943a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1944a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1945a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1946a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1947a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1948a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1949a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1950a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1951a30f8f8cSSatish Balay submatrix (same for all local rows) 1952a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19536d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19546d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19556d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1956a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1957a30f8f8cSSatish Balay submatrix (same for all local rows). 1958a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1959a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1960a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1961a30f8f8cSSatish Balay 1962a30f8f8cSSatish Balay Output Parameter: 1963a30f8f8cSSatish Balay . A - the matrix 1964a30f8f8cSSatish Balay 1965a30f8f8cSSatish Balay Options Database Keys: 1966a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1967a30f8f8cSSatish Balay block calculations (much slower) 1968a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1969a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1970a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1971a30f8f8cSSatish Balay 1972a30f8f8cSSatish Balay Notes: 1973a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1974a30f8f8cSSatish Balay (possibly both). 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1977a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1978a30f8f8cSSatish Balay 1979a30f8f8cSSatish Balay Storage Information: 1980a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1981a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1982a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1983a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1984a30f8f8cSSatish Balay 1985a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1986a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1987a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1988a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1989a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1990a30f8f8cSSatish Balay 1991a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1992a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1993a30f8f8cSSatish Balay 1994a30f8f8cSSatish Balay .vb 1995a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1996a30f8f8cSSatish Balay ------------------- 1997a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1998a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1999a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2000a30f8f8cSSatish Balay ------------------- 2001a30f8f8cSSatish Balay .ve 2002a30f8f8cSSatish Balay 2003a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2004a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20056d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20066d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2007a30f8f8cSSatish Balay 20086d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20096d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2010a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2011a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2012a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2013a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2014a30f8f8cSSatish Balay matrices. 2015a30f8f8cSSatish Balay 2016a30f8f8cSSatish Balay Level: intermediate 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2019a30f8f8cSSatish Balay 2020a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2021a30f8f8cSSatish Balay @*/ 2022a30f8f8cSSatish Balay 20231302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2024a30f8f8cSSatish Balay { 20256849ba73SBarry Smith PetscErrorCode ierr; 20261302d50aSBarry Smith PetscMPIInt size; 2027a30f8f8cSSatish Balay 2028a30f8f8cSSatish Balay PetscFunctionBegin; 2029b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2030273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2031273d9f13SBarry Smith if (size > 1) { 2032b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2033b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2034273d9f13SBarry Smith } else { 2035273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2036273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2037273d9f13SBarry Smith } 2038a30f8f8cSSatish Balay PetscFunctionReturn(0); 2039a30f8f8cSSatish Balay } 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay 20424a2ae208SSatish Balay #undef __FUNCT__ 20434a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2045a30f8f8cSSatish Balay { 2046a30f8f8cSSatish Balay Mat mat; 2047a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2048dfbe8321SBarry Smith PetscErrorCode ierr; 2049*521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 2050387bc808SHong Zhang PetscScalar *array; 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay PetscFunctionBegin; 2053a30f8f8cSSatish Balay *newmat = 0; 2054b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2055be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20561d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2057e1b6402fSHong Zhang 205882327fa8SHong Zhang mat->factor = matin->factor; 2059273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20617fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20627fff6886SHong Zhang 2063b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2064*521d7252SBarry Smith mat->bs = matin->bs; 2065a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2066a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2067a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2068a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2069a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2070a30f8f8cSSatish Balay 2071a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2072a30f8f8cSSatish Balay a->rend = oldmat->rend; 2073a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2074a30f8f8cSSatish Balay a->cend = oldmat->cend; 2075a30f8f8cSSatish Balay a->size = oldmat->size; 2076a30f8f8cSSatish Balay a->rank = oldmat->rank; 2077a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2078a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2079a30f8f8cSSatish Balay a->rowindices = 0; 2080a30f8f8cSSatish Balay a->rowvalues = 0; 2081a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2082a30f8f8cSSatish Balay a->barray = 0; 2083a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2084a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2085a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2086a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2087a30f8f8cSSatish Balay 2088a30f8f8cSSatish Balay /* hash table stuff */ 2089a30f8f8cSSatish Balay a->ht = 0; 2090a30f8f8cSSatish Balay a->hd = 0; 2091a30f8f8cSSatish Balay a->ht_size = 0; 2092a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2093a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2094a30f8f8cSSatish Balay a->ht_total_ct = 0; 2095a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2096a30f8f8cSSatish Balay 20971302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2098a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2099*521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 2100a30f8f8cSSatish Balay if (oldmat->colmap) { 2101a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2102a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay #else 21041302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 21051302d50aSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt)); 21061302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2107a30f8f8cSSatish Balay #endif 2108a30f8f8cSSatish Balay } else a->colmap = 0; 2109387bc808SHong Zhang 2110a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21111302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 21121302d50aSBarry Smith PetscLogObjectMemory(mat,len*sizeof(PetscInt)); 21131302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2114a30f8f8cSSatish Balay } else a->garray = 0; 2115a30f8f8cSSatish Balay 2116a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2117b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2118a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2119b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 212082327fa8SHong Zhang 212182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2122387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 212382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2124387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2125387bc808SHong Zhang 2126387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21271ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2128387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2129387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21301ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2132387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21331ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 2134387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2135387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2136387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2137387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2138387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2139387bc808SHong Zhang 2140387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2141387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2142387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2143387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 214482327fa8SHong Zhang 2145a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2146b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2147a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2148b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2149b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2150a30f8f8cSSatish Balay *newmat = mat; 2151a30f8f8cSSatish Balay PetscFunctionReturn(0); 2152a30f8f8cSSatish Balay } 2153a30f8f8cSSatish Balay 2154a30f8f8cSSatish Balay #include "petscsys.h" 2155a30f8f8cSSatish Balay 21564a2ae208SSatish Balay #undef __FUNCT__ 21574a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2158dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2159a30f8f8cSSatish Balay { 2160a30f8f8cSSatish Balay Mat A; 21616849ba73SBarry Smith PetscErrorCode ierr; 21621302d50aSBarry Smith PetscInt i,nz,j,rstart,rend,fd; 216387828ca2SBarry Smith PetscScalar *vals,*buf; 2164a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2165a30f8f8cSSatish Balay MPI_Status status; 21661302d50aSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 21671302d50aSBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 21681302d50aSBarry Smith PetscInt *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 21691302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21701302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21711302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 2172a30f8f8cSSatish Balay 2173a30f8f8cSSatish Balay PetscFunctionBegin; 2174b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay 2176a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2178a30f8f8cSSatish Balay if (!rank) { 2179b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2181552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2182a30f8f8cSSatish Balay if (header[3] < 0) { 218329bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2184a30f8f8cSSatish Balay } 2185a30f8f8cSSatish Balay } 2186a30f8f8cSSatish Balay 2187a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2189a30f8f8cSSatish Balay 219029bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2191a30f8f8cSSatish Balay 2192a30f8f8cSSatish Balay /* 2193a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2194a30f8f8cSSatish Balay divisible by the blocksize 2195a30f8f8cSSatish Balay */ 2196a30f8f8cSSatish Balay Mbs = M/bs; 2197a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2198a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2199a30f8f8cSSatish Balay else Mbs++; 2200a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2201b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2202a30f8f8cSSatish Balay } 2203a30f8f8cSSatish Balay 2204a30f8f8cSSatish Balay /* determine ownership of all rows */ 2205a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2206a30f8f8cSSatish Balay m = mbs*bs; 22071302d50aSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay browners = rowners + size + 1; 2209a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay rowners[0] = 0; 2211a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2212a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2213a30f8f8cSSatish Balay rstart = rowners[rank]; 2214a30f8f8cSSatish Balay rend = rowners[rank+1]; 2215a30f8f8cSSatish Balay 2216a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22171302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay if (!rank) { 22191302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 22221302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&sndcounts);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2224a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay } else { 2227a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay } 2229a30f8f8cSSatish Balay 22300222edb1SHong Zhang if (!rank) { /* procs[0] */ 2231a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22321302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22331302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2234a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2235a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2236a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2237a30f8f8cSSatish Balay } 2238a30f8f8cSSatish Balay } 2239a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2240a30f8f8cSSatish Balay 2241a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2242a30f8f8cSSatish Balay maxnz = 0; 2243a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2244a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2245a30f8f8cSSatish Balay } 22461302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2247a30f8f8cSSatish Balay 2248a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2249a30f8f8cSSatish Balay nz = procsnz[0]; 22501302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay mycols = ibuf; 2252a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2253a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2254a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2255a30f8f8cSSatish Balay 2256a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2257a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2258a30f8f8cSSatish Balay nz = procsnz[i]; 2259a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2260a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2261a30f8f8cSSatish Balay } 2262a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2263a30f8f8cSSatish Balay if (size != 1) { 2264a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2265a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2267a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay } 2269a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22700222edb1SHong Zhang } else { /* procs[i], i>0 */ 2271a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2272a30f8f8cSSatish Balay nz = 0; 2273a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2274a30f8f8cSSatish Balay nz += locrowlens[i]; 2275a30f8f8cSSatish Balay } 22761302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2277a30f8f8cSSatish Balay mycols = ibuf; 2278a30f8f8cSSatish Balay /* receive message of column indices*/ 2279a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 228129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2282a30f8f8cSSatish Balay } 2283a30f8f8cSSatish Balay 2284a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22851302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2286a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22871302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22881302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2289a30f8f8cSSatish Balay masked1 = mask + Mbs; 2290a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2291a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2292a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2293a30f8f8cSSatish Balay dcount = 0; 2294a30f8f8cSSatish Balay odcount = 0; 2295a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2296a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2297a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22980222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2299a30f8f8cSSatish Balay if (!mask[tmp]) { 2300a30f8f8cSSatish Balay mask[tmp] = 1; 23010222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23020222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2303a30f8f8cSSatish Balay } 2304a30f8f8cSSatish Balay } 2305a30f8f8cSSatish Balay rowcount++; 2306a30f8f8cSSatish Balay } 2307a30f8f8cSSatish Balay 23080222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23090222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2310a30f8f8cSSatish Balay 2311a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2312a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2313a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2314a30f8f8cSSatish Balay } 2315a30f8f8cSSatish Balay 2316a30f8f8cSSatish Balay /* create our matrix */ 231722191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 231822191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 231922191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2320273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2321a30f8f8cSSatish Balay 2322a30f8f8cSSatish Balay if (!rank) { 232387828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2324a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2325a30f8f8cSSatish Balay nz = procsnz[0]; 2326a30f8f8cSSatish Balay vals = buf; 2327a30f8f8cSSatish Balay mycols = ibuf; 2328a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2329a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2330a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2331a30f8f8cSSatish Balay 2332a30f8f8cSSatish Balay /* insert into matrix */ 2333a30f8f8cSSatish Balay jj = rstart*bs; 2334a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23357e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2336a30f8f8cSSatish Balay mycols += locrowlens[i]; 2337a30f8f8cSSatish Balay vals += locrowlens[i]; 2338a30f8f8cSSatish Balay jj++; 2339a30f8f8cSSatish Balay } 23407e06b45fSHong Zhang 2341a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2342a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2343a30f8f8cSSatish Balay nz = procsnz[i]; 2344a30f8f8cSSatish Balay vals = buf; 2345a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2346a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2347a30f8f8cSSatish Balay } 2348a30f8f8cSSatish Balay /* the last proc */ 2349a30f8f8cSSatish Balay if (size != 1){ 2350a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2351a30f8f8cSSatish Balay vals = buf; 2352a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2353a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2354a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2355a30f8f8cSSatish Balay } 2356a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23577e06b45fSHong Zhang 2358a30f8f8cSSatish Balay } else { 2359a30f8f8cSSatish Balay /* receive numeric values */ 236087828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay 2362a30f8f8cSSatish Balay /* receive message of values*/ 2363a30f8f8cSSatish Balay vals = buf; 2364a30f8f8cSSatish Balay mycols = ibuf; 2365a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 236729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2368a30f8f8cSSatish Balay 2369a30f8f8cSSatish Balay /* insert into matrix */ 2370a30f8f8cSSatish Balay jj = rstart*bs; 2371a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2372a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2373a30f8f8cSSatish Balay mycols += locrowlens[i]; 2374a30f8f8cSSatish Balay vals += locrowlens[i]; 2375a30f8f8cSSatish Balay jj++; 2376a30f8f8cSSatish Balay } 2377a30f8f8cSSatish Balay } 23787e06b45fSHong Zhang 2379a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2380a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2381a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2382a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2385a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2386a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238722191285SKris Buschelman *newmat = A; 2388a30f8f8cSSatish Balay PetscFunctionReturn(0); 2389a30f8f8cSSatish Balay } 2390a30f8f8cSSatish Balay 23914a2ae208SSatish Balay #undef __FUNCT__ 23924a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2393a30f8f8cSSatish Balay /*@ 2394a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2395a30f8f8cSSatish Balay 2396a30f8f8cSSatish Balay Input Parameters: 2397a30f8f8cSSatish Balay . mat - the matrix 2398a30f8f8cSSatish Balay . fact - factor 2399a30f8f8cSSatish Balay 2400a30f8f8cSSatish Balay Collective on Mat 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay Level: advanced 2403a30f8f8cSSatish Balay 2404a30f8f8cSSatish Balay Notes: 2405a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay .seealso: MatSetOption() 2410a30f8f8cSSatish Balay @*/ 2411dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2412a30f8f8cSSatish Balay { 2413a30f8f8cSSatish Balay PetscFunctionBegin; 24141302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 241596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2416a30f8f8cSSatish Balay } 241724d5174aSHong Zhang 24184a2ae208SSatish Balay #undef __FUNCT__ 24194a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2420dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 242124d5174aSHong Zhang { 242224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2423f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2424ca54ac64SHong Zhang PetscReal atmp; 242587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2426dfbe8321SBarry Smith PetscErrorCode ierr; 24271302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24281302d50aSBarry Smith PetscMPIInt rank,size; 24291302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 243087828ca2SBarry Smith PetscScalar *va; 24318a1c53f2SBarry Smith MatScalar *ba; 2432f4c0e9e4SHong Zhang MPI_Status stat; 243324d5174aSHong Zhang 243424d5174aSHong Zhang PetscFunctionBegin; 2435d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24361ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2437f4c0e9e4SHong Zhang 243856faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 243956faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2440f4c0e9e4SHong Zhang 2441*521d7252SBarry Smith bs = A->bs; 2442f4c0e9e4SHong Zhang mbs = a->mbs; 2443f4c0e9e4SHong Zhang Mbs = a->Mbs; 2444f4c0e9e4SHong Zhang ba = b->a; 2445f4c0e9e4SHong Zhang bi = b->i; 2446f4c0e9e4SHong Zhang bj = b->j; 2447f4c0e9e4SHong Zhang 2448f4c0e9e4SHong Zhang /* find ownerships */ 2449f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2450f4c0e9e4SHong Zhang 2451f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245282502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2453ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2454f4c0e9e4SHong Zhang 2455f4c0e9e4SHong Zhang /* row_max for B */ 2456b8475685SHong Zhang if (rank != size-1){ 2457f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2458f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2459f4c0e9e4SHong Zhang brow = bs*i; 2460f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2461f4c0e9e4SHong Zhang bcol = bs*(*bj); 2462f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2463ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2465f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2466f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2467ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2468ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2469f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2470f4c0e9e4SHong Zhang } 2471f4c0e9e4SHong Zhang } 2472f4c0e9e4SHong Zhang bj++; 2473f4c0e9e4SHong Zhang } 2474f4c0e9e4SHong Zhang } 2475f4c0e9e4SHong Zhang 2476f4c0e9e4SHong Zhang /* send values to its owners */ 2477f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2478f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2479ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 248056faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2481ca54ac64SHong Zhang } 2482f4c0e9e4SHong Zhang } 2483f4c0e9e4SHong Zhang 2484f4c0e9e4SHong Zhang /* receive values */ 2485ca54ac64SHong Zhang if (rank){ 2486f4c0e9e4SHong Zhang rvalues = work; 2487ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2488f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248956faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2490f4c0e9e4SHong Zhang /* process values */ 2491f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2492ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2493f4c0e9e4SHong Zhang } 2494f4c0e9e4SHong Zhang } 2495ca54ac64SHong Zhang } 2496f4c0e9e4SHong Zhang 24971ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2498ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249924d5174aSHong Zhang PetscFunctionReturn(0); 250024d5174aSHong Zhang } 25012798e883SHong Zhang 25022798e883SHong Zhang #undef __FUNCT__ 25032798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 25041302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25052798e883SHong Zhang { 25062798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2507dfbe8321SBarry Smith PetscErrorCode ierr; 2508*521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2509ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2510ffe4fb16SHong Zhang Vec bb1; 2511ffe4fb16SHong Zhang 2512ffe4fb16SHong Zhang PetscFunctionBegin; 251377431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2514ffe4fb16SHong Zhang if (bs > 1) 2515ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2516ffe4fb16SHong Zhang 2517ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2518ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2519ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2520ffe4fb16SHong Zhang its--; 2521ffe4fb16SHong Zhang } 2522ffe4fb16SHong Zhang 2523ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang while (its--){ 2525ffe4fb16SHong Zhang 2526ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2527ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2528ffe4fb16SHong Zhang 2529ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25301ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25311ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2532ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25331ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang 2535ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2536ffe4fb16SHong Zhang 2537ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25381ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25391ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2540ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25411ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang 2543ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2544ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25471ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25481ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2549ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang 2551ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2552ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* local diagonal sweep */ 2555ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang } 2557ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang } else { 2559ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2560ffe4fb16SHong Zhang } 2561ffe4fb16SHong Zhang PetscFunctionReturn(0); 2562ffe4fb16SHong Zhang } 2563ffe4fb16SHong Zhang 2564ffe4fb16SHong Zhang #undef __FUNCT__ 2565ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25661302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2567ffe4fb16SHong Zhang { 2568ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2569dfbe8321SBarry Smith PetscErrorCode ierr; 2570d05c616dSSatish Balay PetscScalar mone=-1.0; 25712798e883SHong Zhang Vec lvec1,bb1; 25722798e883SHong Zhang 25732798e883SHong Zhang PetscFunctionBegin; 257477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2575*521d7252SBarry Smith if (matin->bs > 1) 25762798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25772798e883SHong Zhang 2578c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25792798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2580bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25812798e883SHong Zhang its--; 25822798e883SHong Zhang } 25832798e883SHong Zhang 25842798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25852798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25862798e883SHong Zhang while (its--){ 25872798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25882798e883SHong Zhang 25892798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25902798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25912798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25922798e883SHong Zhang 25932798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25942798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25952798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25962798e883SHong Zhang 25972798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25982798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25992798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26002798e883SHong Zhang 26012798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26022798e883SHong Zhang 2603c14dc6b6SHong Zhang /* diagonal sweep */ 2604bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26052798e883SHong Zhang } 26062798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26072798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2608c14dc6b6SHong Zhang } else { 2609c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2610c14dc6b6SHong Zhang } 26112798e883SHong Zhang PetscFunctionReturn(0); 26122798e883SHong Zhang } 26132798e883SHong Zhang 2614