xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 533163c2cd1b19f0f8b5307c6699b5cf12eec670)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
146d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
147d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
16971fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
2610880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++  = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3080880e062SHong Zhang         }
3090880e062SHong Zhang         else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3230880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
3260880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3300880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3360880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col =  in[j];
3380880e062SHong Zhang             }
3390880e062SHong Zhang           }
3400880e062SHong Zhang           else col = in[j];
341e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3420880e062SHong Zhang         }
3430880e062SHong Zhang       }
3440880e062SHong Zhang     } else {
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
36897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
376a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data --;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     } else {
39629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
397a30f8f8cSSatish Balay     }
398a30f8f8cSSatish Balay   }
399a30f8f8cSSatish Balay  PetscFunctionReturn(0);
400a30f8f8cSSatish Balay }
401a30f8f8cSSatish Balay 
4024a2ae208SSatish Balay #undef __FUNCT__
4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
405a30f8f8cSSatish Balay {
406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
407dfbe8321SBarry Smith   PetscErrorCode ierr;
408a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
409a30f8f8cSSatish Balay 
410a30f8f8cSSatish Balay   PetscFunctionBegin;
411a30f8f8cSSatish Balay   if (baij->size == 1) {
412a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
413a30f8f8cSSatish Balay   } else {
414a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
415f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
418a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4207adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
422a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4230b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4240b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4250b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4260b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
427899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
428d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4290b8dc8d2SHong Zhang       MatScalar    *v;
4300b8dc8d2SHong Zhang 
43174ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
432d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4330b8dc8d2SHong Zhang       /* Amat */
4340b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4350b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4360b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4370b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4380b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4390b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4400b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4410b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4420b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4430b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4440b8dc8d2SHong Zhang               /* non-diagonal block */
4450b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4460b8dc8d2SHong Zhang             }
4470b8dc8d2SHong Zhang           }
4480b8dc8d2SHong Zhang         }
4490b8dc8d2SHong Zhang       }
4500b8dc8d2SHong Zhang       /* Bmat */
4510b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4520b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4530b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4540b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4550b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4560b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4570b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4580b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4590b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4600b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4610b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4620b8dc8d2SHong Zhang             }
4630b8dc8d2SHong Zhang           }
4640b8dc8d2SHong Zhang         }
4650b8dc8d2SHong Zhang       }
466d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4670b8dc8d2SHong Zhang       *norm = 0.0;
468d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4690b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4700b8dc8d2SHong Zhang       }
47174ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
472a30f8f8cSSatish Balay     } else {
47329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
474a30f8f8cSSatish Balay     }
475a30f8f8cSSatish Balay   }
476a30f8f8cSSatish Balay   PetscFunctionReturn(0);
477a30f8f8cSSatish Balay }
478a30f8f8cSSatish Balay 
4794a2ae208SSatish Balay #undef __FUNCT__
4804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
481dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
482a30f8f8cSSatish Balay {
483a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
484dfbe8321SBarry Smith   PetscErrorCode ierr;
4851302d50aSBarry Smith   PetscInt       nstash,reallocs;
486a30f8f8cSSatish Balay   InsertMode     addv;
487a30f8f8cSSatish Balay 
488a30f8f8cSSatish Balay   PetscFunctionBegin;
489a30f8f8cSSatish Balay   if (baij->donotstash) {
490a30f8f8cSSatish Balay     PetscFunctionReturn(0);
491a30f8f8cSSatish Balay   }
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4947adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
495a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
49629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
497a30f8f8cSSatish Balay   }
498a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
499a30f8f8cSSatish Balay 
500d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5011e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
502a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5031e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
504a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5051e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
506a30f8f8cSSatish Balay   PetscFunctionReturn(0);
507a30f8f8cSSatish Balay }
508a30f8f8cSSatish Balay 
5094a2ae208SSatish Balay #undef __FUNCT__
5104a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
511dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
512a30f8f8cSSatish Balay {
513a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
514a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5156849ba73SBarry Smith   PetscErrorCode ierr;
51613f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
517e44c0bd4SBarry Smith   PetscInt       *row,*col;
518e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
51913f74950SBarry Smith   PetscMPIInt    n;
520a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
521a30f8f8cSSatish Balay   MatScalar      *val;
522a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
523a30f8f8cSSatish Balay 
52491c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
525a30f8f8cSSatish Balay   PetscFunctionBegin;
526a30f8f8cSSatish Balay 
527a30f8f8cSSatish Balay   if (!baij->donotstash) {
528a30f8f8cSSatish Balay     while (1) {
529a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
530a30f8f8cSSatish Balay       if (!flg) break;
531a30f8f8cSSatish Balay 
532a30f8f8cSSatish Balay       for (i=0; i<n;) {
533a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
534a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
535a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
536a30f8f8cSSatish Balay         else       ncols = n-i;
537a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
538dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
539a30f8f8cSSatish Balay         i = j;
540a30f8f8cSSatish Balay       }
541a30f8f8cSSatish Balay     }
542a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
543a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
544a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
545a30f8f8cSSatish Balay        restore the original flags */
546a30f8f8cSSatish Balay     r1 = baij->roworiented;
547a30f8f8cSSatish Balay     r2 = a->roworiented;
54891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
549a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
550a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
552a30f8f8cSSatish Balay     while (1) {
553a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
554a30f8f8cSSatish Balay       if (!flg) break;
555a30f8f8cSSatish Balay 
556a30f8f8cSSatish Balay       for (i=0; i<n;) {
557a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
558a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
559a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
560a30f8f8cSSatish Balay         else       ncols = n-i;
561dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
562a30f8f8cSSatish Balay         i = j;
563a30f8f8cSSatish Balay       }
564a30f8f8cSSatish Balay     }
565a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
566a30f8f8cSSatish Balay     baij->roworiented = r1;
567a30f8f8cSSatish Balay     a->roworiented    = r2;
56891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay 
571a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
572a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
575a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
576a30f8f8cSSatish Balay   /*
577a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
578a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
579a30f8f8cSSatish Balay   */
580a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5817adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
582a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
583c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
584a30f8f8cSSatish Balay     }
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay 
587a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58840781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
589a30f8f8cSSatish Balay   }
59091c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
591a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
592a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay 
59474ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
595a30f8f8cSSatish Balay   baij->rowvalues = 0;
5965222a1afSHong Zhang 
597a30f8f8cSSatish Balay   PetscFunctionReturn(0);
598a30f8f8cSSatish Balay }
599a30f8f8cSSatish Balay 
600dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6014a2ae208SSatish Balay #undef __FUNCT__
6024a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6036849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
604a30f8f8cSSatish Balay {
605a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
606dfbe8321SBarry Smith   PetscErrorCode    ierr;
607d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6081302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
60932077d6dSBarry Smith   PetscTruth        iascii,isdraw;
610b0a32e0cSBarry Smith   PetscViewer       sviewer;
611f3ef73ceSBarry Smith   PetscViewerFormat format;
612a30f8f8cSSatish Balay 
613a30f8f8cSSatish Balay   PetscFunctionBegin;
61432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
615fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61632077d6dSBarry Smith   if (iascii) {
617b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
618456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
619a30f8f8cSSatish Balay       MatInfo info;
6207adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
621a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
623d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
624d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
627a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
629b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63007d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
631a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
632a30f8f8cSSatish Balay       PetscFunctionReturn(0);
633fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       PetscFunctionReturn(0);
636c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
637c1490034SHong Zhang       PetscFunctionReturn(0);
638a30f8f8cSSatish Balay     }
639a30f8f8cSSatish Balay   }
640a30f8f8cSSatish Balay 
641a30f8f8cSSatish Balay   if (isdraw) {
642b0a32e0cSBarry Smith     PetscDraw  draw;
643a30f8f8cSSatish Balay     PetscTruth isnull;
644b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
645b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
646a30f8f8cSSatish Balay   }
647a30f8f8cSSatish Balay 
648a30f8f8cSSatish Balay   if (size == 1) {
6497adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
650a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
651a30f8f8cSSatish Balay   } else {
652a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
653a30f8f8cSSatish Balay     Mat          A;
65465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
656d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
657a30f8f8cSSatish Balay     MatScalar    *a;
658a30f8f8cSSatish Balay 
659f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6607adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
661a30f8f8cSSatish Balay     if (!rank) {
662f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
663a30f8f8cSSatish Balay     } else {
664f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     }
666f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
667d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay     /* copy over the A part */
67165d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
672a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6731302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
676e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
677a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
678a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
679e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
680a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
681dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
682a30f8f8cSSatish Balay           col++; a += bs;
683a30f8f8cSSatish Balay         }
684a30f8f8cSSatish Balay       }
685a30f8f8cSSatish Balay     }
686a30f8f8cSSatish Balay     /* copy over the B part */
68765d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68865d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
689a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
690e9f7bc9eSHong Zhang 
691e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
692a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
693a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
694a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
695a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
696799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
697a30f8f8cSSatish Balay           col++; a += bs;
698a30f8f8cSSatish Balay         }
699a30f8f8cSSatish Balay       }
700a30f8f8cSSatish Balay     }
701a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
702a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     /*
705a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
706b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
707a30f8f8cSSatish Balay     */
708b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
70965d70643SHong Zhang     if (!rank) {
7107adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
711a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
712a30f8f8cSSatish Balay     }
713b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
715a30f8f8cSSatish Balay   }
716a30f8f8cSSatish Balay   PetscFunctionReturn(0);
717a30f8f8cSSatish Balay }
718a30f8f8cSSatish Balay 
7194a2ae208SSatish Balay #undef __FUNCT__
7204a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
721dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
722a30f8f8cSSatish Balay {
723dfbe8321SBarry Smith   PetscErrorCode ierr;
72432077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
725a30f8f8cSSatish Balay 
726a30f8f8cSSatish Balay   PetscFunctionBegin;
72732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
728fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
729b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
730fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73132077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
732a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
733a30f8f8cSSatish Balay   } else {
7341302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
735a30f8f8cSSatish Balay   }
736a30f8f8cSSatish Balay   PetscFunctionReturn(0);
737a30f8f8cSSatish Balay }
738a30f8f8cSSatish Balay 
7394a2ae208SSatish Balay #undef __FUNCT__
7404a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
741dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
742a30f8f8cSSatish Balay {
743a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
744dfbe8321SBarry Smith   PetscErrorCode ierr;
745a30f8f8cSSatish Balay 
746a30f8f8cSSatish Balay   PetscFunctionBegin;
747a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
748d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
749a30f8f8cSSatish Balay #endif
750a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
754a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7559c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
756a30f8f8cSSatish Balay #else
75705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
758a30f8f8cSSatish Balay #endif
75905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
761a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76240781036SHong Zhang   if (baij->slvec0) {
76340781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76540781036SHong Zhang   }
76640781036SHong Zhang   if (baij->slvec1) {
76740781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77040781036SHong Zhang   }
77140781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77205b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
775fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
776fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
77865460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
77905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
780a30f8f8cSSatish Balay #endif
78159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
783899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
784a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
785901853e0SKris Buschelman 
786dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
787901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
791a30f8f8cSSatish Balay   PetscFunctionReturn(0);
792a30f8f8cSSatish Balay }
793a30f8f8cSSatish Balay 
7944a2ae208SSatish Balay #undef __FUNCT__
795547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
796547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
797547795f9SHong Zhang {
798547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
799547795f9SHong Zhang   PetscErrorCode ierr;
800547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
801547795f9SHong Zhang   PetscScalar    *x,*from;
802547795f9SHong Zhang 
803547795f9SHong Zhang   PetscFunctionBegin;
804547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
805547795f9SHong Zhang   if (nt != A->cmap->n) {
806547795f9SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
807547795f9SHong Zhang   }
808547795f9SHong Zhang 
809547795f9SHong Zhang   /* diagonal part */
810547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
811547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
812547795f9SHong Zhang 
813547795f9SHong Zhang   /* subdiagonal part */
814547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
815547795f9SHong Zhang 
816547795f9SHong Zhang   /* copy x into the vec slvec0 */
817547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
818547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
821547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
823547795f9SHong Zhang 
824547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   /* supperdiagonal part */
827547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
828547795f9SHong Zhang   PetscFunctionReturn(0);
829547795f9SHong Zhang }
830547795f9SHong Zhang 
831547795f9SHong Zhang #undef __FUNCT__
832a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
833dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
834a9d4b620SHong Zhang {
835a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
836dfbe8321SBarry Smith   PetscErrorCode ierr;
837d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
838fa22f6d0SBarry Smith   PetscScalar    *x,*from;
839a9d4b620SHong Zhang 
840a9d4b620SHong Zhang   PetscFunctionBegin;
841a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
842d0f46423SBarry Smith   if (nt != A->cmap->n) {
843a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a9d4b620SHong Zhang   }
845a9d4b620SHong Zhang 
846a9d4b620SHong Zhang   /* diagonal part */
847a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
848fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
849a9d4b620SHong Zhang 
850a9d4b620SHong Zhang   /* subdiagonal part */
851a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
852fc165ae2SBarry Smith 
853a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8541ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8551ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
856a9d4b620SHong Zhang 
857fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
858fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8591ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
860fc165ae2SBarry Smith 
861fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
863a9d4b620SHong Zhang   /* supperdiagonal part */
864a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
865a9d4b620SHong Zhang   PetscFunctionReturn(0);
866a9d4b620SHong Zhang }
867a9d4b620SHong Zhang 
868a9d4b620SHong Zhang #undef __FUNCT__
86940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
870dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
871a30f8f8cSSatish Balay {
872a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
873dfbe8321SBarry Smith   PetscErrorCode ierr;
8741302d50aSBarry Smith   PetscInt       nt;
875a30f8f8cSSatish Balay 
876a30f8f8cSSatish Balay   PetscFunctionBegin;
877a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
878d0f46423SBarry Smith   if (nt != A->cmap->n) {
87929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
880a30f8f8cSSatish Balay   }
881a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
882d0f46423SBarry Smith   if (nt != A->rmap->N) {
88329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
884a30f8f8cSSatish Balay   }
88565d70643SHong Zhang 
886ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
887b941877fSHong Zhang   /* do diagonal part */
888b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
889b941877fSHong Zhang   /* do supperdiagonal part */
890ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
891b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
892b941877fSHong Zhang   /* do subdiagonal part */
893b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
894ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
895ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89665d70643SHong Zhang 
897a30f8f8cSSatish Balay   PetscFunctionReturn(0);
898a30f8f8cSSatish Balay }
899a30f8f8cSSatish Balay 
9004a2ae208SSatish Balay #undef __FUNCT__
9014a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
902dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
903a30f8f8cSSatish Balay {
904de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
905dfbe8321SBarry Smith   PetscErrorCode ierr;
906d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
907a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
908a9d4b620SHong Zhang 
909a9d4b620SHong Zhang   PetscFunctionBegin;
910a9d4b620SHong Zhang   /*
9117adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9127adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
913a9d4b620SHong Zhang   */
914a9d4b620SHong Zhang   /* diagonal part */
915a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9162dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
917a9d4b620SHong Zhang 
918a9d4b620SHong Zhang   /* subdiagonal part */
919a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
920a9d4b620SHong Zhang 
921a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9221ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9231ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
924a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9251ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
926a9d4b620SHong Zhang 
927ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9281ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
929ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
930a9d4b620SHong Zhang 
931a9d4b620SHong Zhang   /* supperdiagonal part */
932a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   PetscFunctionReturn(0);
935a9d4b620SHong Zhang }
936a9d4b620SHong Zhang 
937a9d4b620SHong Zhang #undef __FUNCT__
938a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
939dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
940a9d4b620SHong Zhang {
941a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
942dfbe8321SBarry Smith   PetscErrorCode ierr;
943a30f8f8cSSatish Balay 
944a30f8f8cSSatish Balay   PetscFunctionBegin;
945ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
946b941877fSHong Zhang   /* do diagonal part */
947b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
948b941877fSHong Zhang   /* do supperdiagonal part */
949ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
950de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
951de8b6608SHong Zhang 
952b941877fSHong Zhang   /* do subdiagonal part */
953a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
954ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
955ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
956aa482183SHong Zhang 
957a30f8f8cSSatish Balay   PetscFunctionReturn(0);
958a30f8f8cSSatish Balay }
959a30f8f8cSSatish Balay 
960a30f8f8cSSatish Balay /*
961a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
962a30f8f8cSSatish Balay    diagonal block
963a30f8f8cSSatish Balay */
9644a2ae208SSatish Balay #undef __FUNCT__
9654a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
966dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
967a30f8f8cSSatish Balay {
968a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
969dfbe8321SBarry Smith   PetscErrorCode ierr;
970a30f8f8cSSatish Balay 
971a30f8f8cSSatish Balay   PetscFunctionBegin;
972d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
973a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
974a30f8f8cSSatish Balay   PetscFunctionReturn(0);
975a30f8f8cSSatish Balay }
976a30f8f8cSSatish Balay 
9774a2ae208SSatish Balay #undef __FUNCT__
9784a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
979f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
980a30f8f8cSSatish Balay {
981a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
982dfbe8321SBarry Smith   PetscErrorCode ierr;
983a30f8f8cSSatish Balay 
984a30f8f8cSSatish Balay   PetscFunctionBegin;
985f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
986f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
987a30f8f8cSSatish Balay   PetscFunctionReturn(0);
988a30f8f8cSSatish Balay }
989a30f8f8cSSatish Balay 
9904a2ae208SSatish Balay #undef __FUNCT__
9914a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9921302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
993a30f8f8cSSatish Balay {
994d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
995d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
996d0d4cfc2SHong Zhang   PetscErrorCode ierr;
997d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
998d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
999899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1000d0d4cfc2SHong Zhang 
1001a30f8f8cSSatish Balay   PetscFunctionBegin;
10024eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1003d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1004d0d4cfc2SHong Zhang 
1005d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1006d0d4cfc2SHong Zhang     /*
1007d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1008d0d4cfc2SHong Zhang     */
1009d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1010d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1011d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1012d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1013d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1014d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1015d0d4cfc2SHong Zhang     }
101674ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1017d0d4cfc2SHong Zhang   }
1018d0d4cfc2SHong Zhang 
1019d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1020d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1021d0d4cfc2SHong Zhang 
1022d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1023d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1024d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1025d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1026d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1027d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1028d0d4cfc2SHong Zhang 
1029d0d4cfc2SHong Zhang   cmap  = mat->garray;
1030d0d4cfc2SHong Zhang   if (v  || idx) {
1031d0d4cfc2SHong Zhang     if (nztot) {
1032d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1033d0d4cfc2SHong Zhang       PetscInt imark = -1;
1034d0d4cfc2SHong Zhang       if (v) {
1035d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1036d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1037d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1038d0d4cfc2SHong Zhang           else break;
1039d0d4cfc2SHong Zhang         }
1040d0d4cfc2SHong Zhang         imark = i;
1041d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1042d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1043d0d4cfc2SHong Zhang       }
1044d0d4cfc2SHong Zhang       if (idx) {
1045d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1046d0d4cfc2SHong Zhang         if (imark > -1) {
1047d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1048d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1049d0d4cfc2SHong Zhang           }
1050d0d4cfc2SHong Zhang         } else {
1051d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1052d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1053d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1054d0d4cfc2SHong Zhang             else break;
1055d0d4cfc2SHong Zhang           }
1056d0d4cfc2SHong Zhang           imark = i;
1057d0d4cfc2SHong Zhang         }
1058d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1059d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1060d0d4cfc2SHong Zhang       }
1061d0d4cfc2SHong Zhang     } else {
1062d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1063d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1064d0d4cfc2SHong Zhang     }
1065d0d4cfc2SHong Zhang   }
1066d0d4cfc2SHong Zhang   *nz = nztot;
1067d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1068d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1069a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1070a30f8f8cSSatish Balay }
1071a30f8f8cSSatish Balay 
10724a2ae208SSatish Balay #undef __FUNCT__
10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1075a30f8f8cSSatish Balay {
1076a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1077a30f8f8cSSatish Balay 
1078a30f8f8cSSatish Balay   PetscFunctionBegin;
1079abc0a331SBarry Smith   if (!baij->getrowactive) {
1080abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1081a30f8f8cSSatish Balay   }
1082a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1083a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1084a30f8f8cSSatish Balay }
1085a30f8f8cSSatish Balay 
10864a2ae208SSatish Balay #undef __FUNCT__
1087d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1088d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1089d0d4cfc2SHong Zhang {
1090d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1091d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1092d0d4cfc2SHong Zhang 
1093d0d4cfc2SHong Zhang   PetscFunctionBegin;
1094d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1095d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1096d0d4cfc2SHong Zhang }
1097d0d4cfc2SHong Zhang #undef __FUNCT__
1098d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1099d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1100d0d4cfc2SHong Zhang {
1101d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1102d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1103d0d4cfc2SHong Zhang 
1104d0d4cfc2SHong Zhang   PetscFunctionBegin;
1105d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1106d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1107d0d4cfc2SHong Zhang }
1108d0d4cfc2SHong Zhang 
1109d0d4cfc2SHong Zhang #undef __FUNCT__
111099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
111199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111299cafbc1SBarry Smith {
111399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111499cafbc1SBarry Smith   PetscErrorCode ierr;
111599cafbc1SBarry Smith 
111699cafbc1SBarry Smith   PetscFunctionBegin;
111799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111999cafbc1SBarry Smith   PetscFunctionReturn(0);
112099cafbc1SBarry Smith }
112199cafbc1SBarry Smith 
112299cafbc1SBarry Smith #undef __FUNCT__
112399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112599cafbc1SBarry Smith {
112699cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112799cafbc1SBarry Smith   PetscErrorCode ierr;
112899cafbc1SBarry Smith 
112999cafbc1SBarry Smith   PetscFunctionBegin;
113099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
113199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113299cafbc1SBarry Smith   PetscFunctionReturn(0);
113399cafbc1SBarry Smith }
113499cafbc1SBarry Smith 
113599cafbc1SBarry Smith #undef __FUNCT__
11364a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1137dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1138a30f8f8cSSatish Balay {
1139a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1140dfbe8321SBarry Smith   PetscErrorCode ierr;
1141a30f8f8cSSatish Balay 
1142a30f8f8cSSatish Balay   PetscFunctionBegin;
1143a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1144a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1145a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1146a30f8f8cSSatish Balay }
1147a30f8f8cSSatish Balay 
11484a2ae208SSatish Balay #undef __FUNCT__
11494a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1150dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1151a30f8f8cSSatish Balay {
1152a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1153a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1154dfbe8321SBarry Smith   PetscErrorCode ierr;
1155a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1156a30f8f8cSSatish Balay 
1157a30f8f8cSSatish Balay   PetscFunctionBegin;
1158d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1159a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1160a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1161a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1162a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1163a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1164a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1165a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1166a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1167a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1168a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1169a30f8f8cSSatish Balay     info->memory       = isend[3];
1170a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1171a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11727adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1173a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1174a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1175a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1176a30f8f8cSSatish Balay     info->memory       = irecv[3];
1177a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1178a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11797adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1180a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1181a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1182a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1183a30f8f8cSSatish Balay     info->memory       = irecv[3];
1184a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1185a30f8f8cSSatish Balay   } else {
118677431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1187a30f8f8cSSatish Balay   }
1188a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1189a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1190a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1191a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1192a30f8f8cSSatish Balay }
1193a30f8f8cSSatish Balay 
11944a2ae208SSatish Balay #undef __FUNCT__
11954a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11964e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1197a30f8f8cSSatish Balay {
1198a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1199d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1200dfbe8321SBarry Smith   PetscErrorCode ierr;
1201a30f8f8cSSatish Balay 
1202a30f8f8cSSatish Balay   PetscFunctionBegin;
1203e98b92d7SKris Buschelman   switch (op) {
1204512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1205e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1207a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1208e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12094e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12104e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1211e98b92d7SKris Buschelman     break;
1212e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12134e0d8c25SBarry Smith     a->roworiented = flg;
12144e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12154e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1216e98b92d7SKris Buschelman     break;
12174e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1218290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1219e98b92d7SKris Buschelman     break;
1220e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12214e0d8c25SBarry Smith     a->donotstash = flg;
1222e98b92d7SKris Buschelman     break;
1223e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12244e0d8c25SBarry Smith     a->ht_flag = flg;
1225e98b92d7SKris Buschelman     break;
12269a4540c5SBarry Smith   case MAT_HERMITIAN:
1227547795f9SHong Zhang     if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1228eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1229547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1230eeffb40dSHong Zhang     break;
123177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1232eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1233eeffb40dSHong Zhang     break;
123477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1235eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1236eeffb40dSHong Zhang     break;
12379a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12384e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1239290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124077e54ba9SKris Buschelman     break;
1241d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12424e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1243d0d4cfc2SHong Zhang     break;
1244d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12454e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1246d0d4cfc2SHong Zhang     break;
1247d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12484e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1249d0d4cfc2SHong Zhang     break;
1250e98b92d7SKris Buschelman   default:
1251ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1252a30f8f8cSSatish Balay   }
1253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1254a30f8f8cSSatish Balay }
1255a30f8f8cSSatish Balay 
12564a2ae208SSatish Balay #undef __FUNCT__
12578115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1258fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1259a30f8f8cSSatish Balay {
1260dfbe8321SBarry Smith   PetscErrorCode ierr;
1261a30f8f8cSSatish Balay   PetscFunctionBegin;
1262815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1263999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1264fc4dec0aSBarry Smith   }
12658115998fSBarry Smith   PetscFunctionReturn(0);
1266a30f8f8cSSatish Balay }
1267a30f8f8cSSatish Balay 
12684a2ae208SSatish Balay #undef __FUNCT__
12694a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1270dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1271a30f8f8cSSatish Balay {
1272a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1273a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1274dfbe8321SBarry Smith   PetscErrorCode ierr;
12755e90f9d9SHong Zhang   PetscInt       nv,m,n;
1276b3bf805bSHong Zhang   PetscTruth     flg;
1277a30f8f8cSSatish Balay 
1278a30f8f8cSSatish Balay   PetscFunctionBegin;
1279a30f8f8cSSatish Balay   if (ll != rr){
1280b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1281b3bf805bSHong Zhang     if (!flg)
128229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1283a30f8f8cSSatish Balay   }
1284b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1285b3bf805bSHong Zhang 
12865e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12875e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1288b3bf805bSHong Zhang 
12895e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12905e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12915e90f9d9SHong Zhang 
1292ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12935e90f9d9SHong Zhang 
12945e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1295a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12965e90f9d9SHong Zhang 
12975e90f9d9SHong Zhang   /* scale the diagonal part */
1298a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1299a30f8f8cSSatish Balay 
13005e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1301ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1302a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1304a30f8f8cSSatish Balay }
1305a30f8f8cSSatish Balay 
13064a2ae208SSatish Balay #undef __FUNCT__
13074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1308dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1309a30f8f8cSSatish Balay {
1310f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1311dfbe8321SBarry Smith   PetscErrorCode ierr;
1312a30f8f8cSSatish Balay 
1313a30f8f8cSSatish Balay   PetscFunctionBegin;
1314a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1315a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1316a30f8f8cSSatish Balay }
1317a30f8f8cSSatish Balay 
13186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1319a30f8f8cSSatish Balay 
13204a2ae208SSatish Balay #undef __FUNCT__
13214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1322dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1323a30f8f8cSSatish Balay {
1324a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1325a30f8f8cSSatish Balay   Mat            a,b,c,d;
1326a30f8f8cSSatish Balay   PetscTruth     flg;
1327dfbe8321SBarry Smith   PetscErrorCode ierr;
1328a30f8f8cSSatish Balay 
1329a30f8f8cSSatish Balay   PetscFunctionBegin;
1330a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1331a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1332a30f8f8cSSatish Balay 
1333a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1334abc0a331SBarry Smith   if (flg) {
1335a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1336a30f8f8cSSatish Balay   }
13377adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1339a30f8f8cSSatish Balay }
1340a30f8f8cSSatish Balay 
13414a2ae208SSatish Balay #undef __FUNCT__
13423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13433c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13443c896bc6SHong Zhang {
13453c896bc6SHong Zhang   PetscErrorCode ierr;
13463c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13473c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13483c896bc6SHong Zhang 
13493c896bc6SHong Zhang   PetscFunctionBegin;
13503c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13513c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1352d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13533c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1354d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13553c896bc6SHong Zhang   } else {
13563c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13573c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13583c896bc6SHong Zhang   }
13593c896bc6SHong Zhang   PetscFunctionReturn(0);
13603c896bc6SHong Zhang }
13613c896bc6SHong Zhang 
13623c896bc6SHong Zhang #undef __FUNCT__
13634a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1364dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1365273d9f13SBarry Smith {
1366dfbe8321SBarry Smith   PetscErrorCode ierr;
1367273d9f13SBarry Smith 
1368273d9f13SBarry Smith   PetscFunctionBegin;
1369db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1370273d9f13SBarry Smith   PetscFunctionReturn(0);
1371273d9f13SBarry Smith }
1372a5e6ed63SBarry Smith 
13734fe895cdSHong Zhang #include "petscblaslapack.h"
13744fe895cdSHong Zhang #undef __FUNCT__
13754fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13764fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13774fe895cdSHong Zhang {
13784fe895cdSHong Zhang   PetscErrorCode ierr;
13794fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13804fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13814fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13824fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13834fe895cdSHong Zhang 
13844fe895cdSHong Zhang   PetscFunctionBegin;
13854fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13864fe895cdSHong Zhang     PetscScalar alpha = a;
13874fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13884fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13890805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13904fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13914fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13924fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13930805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13944fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13954fe895cdSHong Zhang   } else {
1396d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13974fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1398d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13994fe895cdSHong Zhang   }
14004fe895cdSHong Zhang   PetscFunctionReturn(0);
14014fe895cdSHong Zhang }
14024fe895cdSHong Zhang 
1403a5e6ed63SBarry Smith #undef __FUNCT__
14046363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14056363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14066363de48SJed Brown {
14076363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14086363de48SJed Brown   PetscInt        rbs,cbs;
14096363de48SJed Brown   PetscErrorCode  ierr;
14106363de48SJed Brown 
14116363de48SJed Brown   PetscFunctionBegin;
14126363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14136363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14146363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14156363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
14166363de48SJed Brown   if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
14176363de48SJed Brown   if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14186363de48SJed Brown   PetscFunctionReturn(0);
14196363de48SJed Brown }
14206363de48SJed Brown 
14216363de48SJed Brown #undef __FUNCT__
1422a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14231302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1424a5e6ed63SBarry Smith {
14256849ba73SBarry Smith   PetscErrorCode ierr;
14261302d50aSBarry Smith   PetscInt       i;
1427a5e6ed63SBarry Smith   PetscTruth     flg;
1428a5e6ed63SBarry Smith 
14296849ba73SBarry Smith   PetscFunctionBegin;
1430a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1431a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1432a5e6ed63SBarry Smith     if (!flg) {
14331302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1434a5e6ed63SBarry Smith     }
1435a5e6ed63SBarry Smith   }
1436a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1437a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1438a5e6ed63SBarry Smith }
1439a5e6ed63SBarry Smith 
1440a5e6ed63SBarry Smith 
1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1443a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1446a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1448431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1449431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1450a30f8f8cSSatish Balay        0,
1451a30f8f8cSSatish Balay        0,
1452a30f8f8cSSatish Balay        0,
145397304618SKris Buschelman /*10*/ 0,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
145641f059aeSBarry Smith        MatSOR_MPISBAIJ,
1457a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1459a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1467d519adbfSMatthew Knepley /*24*/ 0,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
1472d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1473b5df2d14SHong Zhang        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1483a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1484d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1485a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14863c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1487d519adbfSMatthew Knepley /*44*/ 0,
1488a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        0,
14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497d519adbfSMatthew Knepley /*54*/ 0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1502d519adbfSMatthew Knepley /*59*/ 0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505357abbc8SBarry Smith        0,
150624d5174aSHong Zhang        0,
1507d519adbfSMatthew Knepley /*64*/ 0,
150824d5174aSHong Zhang        0,
150924d5174aSHong Zhang        0,
151024d5174aSHong Zhang        0,
151124d5174aSHong Zhang        0,
1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151324d5174aSHong Zhang        0,
151497304618SKris Buschelman        0,
151597304618SKris Buschelman        0,
151697304618SKris Buschelman        0,
1517d519adbfSMatthew Knepley /*74*/ 0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman        0,
1522d519adbfSMatthew Knepley /*79*/ 0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
1526865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1527d519adbfSMatthew Knepley /*84*/ 0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman        0,
1532d519adbfSMatthew Knepley /*89*/ 0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman        0,
1537d519adbfSMatthew Knepley /*94*/ 0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
154099cafbc1SBarry Smith        0,
154199cafbc1SBarry Smith        0,
1542d519adbfSMatthew Knepley /*99*/ 0,
154399cafbc1SBarry Smith        0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
154699cafbc1SBarry Smith        0,
1547d519adbfSMatthew Knepley /*104*/0,
154899cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1549d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1550d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1551d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
155299cafbc1SBarry Smith };
1553a30f8f8cSSatish Balay 
1554a30f8f8cSSatish Balay 
1555a30f8f8cSSatish Balay EXTERN_C_BEGIN
15564a2ae208SSatish Balay #undef __FUNCT__
15574a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1558be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1559a30f8f8cSSatish Balay {
1560a30f8f8cSSatish Balay   PetscFunctionBegin;
1561a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1562a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1563a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1564a30f8f8cSSatish Balay }
1565a30f8f8cSSatish Balay EXTERN_C_END
1566a30f8f8cSSatish Balay 
1567273d9f13SBarry Smith EXTERN_C_BEGIN
15684a2ae208SSatish Balay #undef __FUNCT__
1569a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1570be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1571a23d5eceSKris Buschelman {
1572a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1573dfbe8321SBarry Smith   PetscErrorCode ierr;
1574db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1575a23d5eceSKris Buschelman 
1576a23d5eceSKris Buschelman   PetscFunctionBegin;
1577db4efbfdSBarry Smith   if (bs < 0){
15787adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1579db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15808c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1581db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1582db4efbfdSBarry Smith   }
1583db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1584db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1585db4efbfdSBarry Smith   }
1586db4efbfdSBarry Smith   bs = newbs;
1587a23d5eceSKris Buschelman 
1588a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1589a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
159077431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
159177431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1592899cda47SBarry Smith 
1593d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
159426283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159526283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1596899cda47SBarry Smith 
1597a23d5eceSKris Buschelman   if (d_nnz) {
1598d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
159977431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1600a23d5eceSKris Buschelman     }
1601a23d5eceSKris Buschelman   }
1602a23d5eceSKris Buschelman   if (o_nnz) {
1603d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160477431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1605a23d5eceSKris Buschelman     }
1606a23d5eceSKris Buschelman   }
1607a23d5eceSKris Buschelman 
1608a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1609d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1610d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1611d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1612d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1613a23d5eceSKris Buschelman   }
1614a23d5eceSKris Buschelman 
1615d0f46423SBarry Smith   B->rmap->bs  = bs;
1616a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1617a23d5eceSKris Buschelman   b->mbs = mbs;
1618a23d5eceSKris Buschelman   b->nbs = mbs;
1619a23d5eceSKris Buschelman   b->Mbs = Mbs;
1620a23d5eceSKris Buschelman   b->Nbs = Mbs;
1621a23d5eceSKris Buschelman 
1622a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1623d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1624a23d5eceSKris Buschelman   }
1625d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1626d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1627a23d5eceSKris Buschelman 
1628d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1629d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1630a23d5eceSKris Buschelman 
1631526dfc15SBarry Smith   if (!B->preallocated) {
1632f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1633d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16349c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163552e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1636f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1637d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16384aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
163952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1640*533163c2SBarry Smith     ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->bstash);CHKERRQ(ierr);
1641526dfc15SBarry Smith   }
1642a23d5eceSKris Buschelman 
1643526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1644526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1645526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1646a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1647a23d5eceSKris Buschelman }
1648a23d5eceSKris Buschelman EXTERN_C_END
1649a23d5eceSKris Buschelman 
16505c9eb25fSBarry Smith EXTERN_C_BEGIN
1651611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1652611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1653611f576cSBarry Smith #endif
1654611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16555c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1656611f576cSBarry Smith #endif
1657b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1658b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1659b5e56a35SBarry Smith #endif
16605c9eb25fSBarry Smith EXTERN_C_END
16615c9eb25fSBarry Smith 
16620bad9183SKris Buschelman /*MC
1663fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16640bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16650bad9183SKris Buschelman 
16660bad9183SKris Buschelman    Options Database Keys:
16670bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16680bad9183SKris Buschelman 
16690bad9183SKris Buschelman   Level: beginner
16700bad9183SKris Buschelman 
16710bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16720bad9183SKris Buschelman M*/
16730bad9183SKris Buschelman 
1674a23d5eceSKris Buschelman EXTERN_C_BEGIN
1675a23d5eceSKris Buschelman #undef __FUNCT__
16764a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1677be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1678b5df2d14SHong Zhang {
1679b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1680dfbe8321SBarry Smith   PetscErrorCode ierr;
1681b5df2d14SHong Zhang   PetscTruth     flg;
1682b5df2d14SHong Zhang 
1683b5df2d14SHong Zhang   PetscFunctionBegin;
1684b5df2d14SHong Zhang 
168538f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1686b0a32e0cSBarry Smith   B->data = (void*)b;
1687b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1688b5df2d14SHong Zhang 
1689b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1690b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1691b5df2d14SHong Zhang   B->mapping         = 0;
1692b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1693b5df2d14SHong Zhang 
1694b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16957adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16967adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1697b5df2d14SHong Zhang 
1698b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1699899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1700b5df2d14SHong Zhang 
1701b5df2d14SHong Zhang   /* build cache for off array entries formed */
17027adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1703b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1704b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1705b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1706b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1707b5df2d14SHong Zhang 
1708b5df2d14SHong Zhang   /* stuff used in block assembly */
1709b5df2d14SHong Zhang   b->barray       = 0;
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1712b5df2d14SHong Zhang   b->lvec         = 0;
1713b5df2d14SHong Zhang   b->Mvctx        = 0;
171440781036SHong Zhang   b->slvec0       = 0;
171540781036SHong Zhang   b->slvec0b      = 0;
171640781036SHong Zhang   b->slvec1       = 0;
171740781036SHong Zhang   b->slvec1a      = 0;
171840781036SHong Zhang   b->slvec1b      = 0;
171940781036SHong Zhang   b->sMvctx       = 0;
1720b5df2d14SHong Zhang 
1721b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1722b5df2d14SHong Zhang   b->rowindices   = 0;
1723b5df2d14SHong Zhang   b->rowvalues    = 0;
1724b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1725b5df2d14SHong Zhang 
1726b5df2d14SHong Zhang   /* hash table stuff */
1727b5df2d14SHong Zhang   b->ht           = 0;
1728b5df2d14SHong Zhang   b->hd           = 0;
1729b5df2d14SHong Zhang   b->ht_size      = 0;
1730b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1731b5df2d14SHong Zhang   b->ht_fact      = 0;
1732b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1733b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1734b5df2d14SHong Zhang 
173559ffdab8SBarry Smith   b->in_loc       = 0;
173659ffdab8SBarry Smith   b->v_loc        = 0;
173759ffdab8SBarry Smith   b->n_loc        = 0;
17387adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17398c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1740b5df2d14SHong Zhang     if (flg) {
1741f6275e2eSBarry Smith       PetscReal fact = 1.39;
17424e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17438c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1744b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1745b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17461e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1747b5df2d14SHong Zhang     }
17488c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17498c07d4e3SBarry Smith 
1750b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1751ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1752b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1753b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1754b5e56a35SBarry Smith #endif
1755611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1756ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17575c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17585c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1759611f576cSBarry Smith #endif
1760611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1761ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17625c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17635c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1764611f576cSBarry Smith #endif
1765b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1766b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1767b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1768b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1769b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1770b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1771b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1772b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1773b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1774a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1775a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1776a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
177723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
177823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
177923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178117667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1782b5df2d14SHong Zhang   PetscFunctionReturn(0);
1783b5df2d14SHong Zhang }
1784273d9f13SBarry Smith EXTERN_C_END
1785b5df2d14SHong Zhang 
1786209238afSKris Buschelman /*MC
1787002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1788209238afSKris Buschelman 
1789209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1790209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1791209238afSKris Buschelman 
1792209238afSKris Buschelman    Options Database Keys:
1793209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1794209238afSKris Buschelman 
1795209238afSKris Buschelman   Level: beginner
1796209238afSKris Buschelman 
1797209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1798209238afSKris Buschelman M*/
1799209238afSKris Buschelman 
1800209238afSKris Buschelman EXTERN_C_BEGIN
1801209238afSKris Buschelman #undef __FUNCT__
1802209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1803be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1804dfbe8321SBarry Smith {
18056849ba73SBarry Smith   PetscErrorCode ierr;
18061302d50aSBarry Smith   PetscMPIInt    size;
1807209238afSKris Buschelman 
1808209238afSKris Buschelman   PetscFunctionBegin;
18097adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1810209238afSKris Buschelman   if (size == 1) {
1811209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1812209238afSKris Buschelman   } else {
1813209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1814209238afSKris Buschelman   }
1815209238afSKris Buschelman   PetscFunctionReturn(0);
1816209238afSKris Buschelman }
1817209238afSKris Buschelman EXTERN_C_END
1818209238afSKris Buschelman 
18194a2ae208SSatish Balay #undef __FUNCT__
18204a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1821b5df2d14SHong Zhang /*@C
1822b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1823b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1824b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1825b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1826b5df2d14SHong Zhang 
1827b5df2d14SHong Zhang    Collective on Mat
1828b5df2d14SHong Zhang 
1829b5df2d14SHong Zhang    Input Parameters:
1830b5df2d14SHong Zhang +  A - the matrix
1831b5df2d14SHong Zhang .  bs   - size of blockk
1832b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1833b5df2d14SHong Zhang            submatrix  (same for all local rows)
1834b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18356d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18366d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18376d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1838b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1839b5df2d14SHong Zhang            submatrix (same for all local rows).
1840b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1841b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1842b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1843b5df2d14SHong Zhang 
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang    Options Database Keys:
1846b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1847b5df2d14SHong Zhang                      block calculations (much slower)
1848b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1849b5df2d14SHong Zhang 
1850b5df2d14SHong Zhang    Notes:
1851b5df2d14SHong Zhang 
1852b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1853b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1854b5df2d14SHong Zhang 
185549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
185649a6f317SBarry Smith 
1857b5df2d14SHong Zhang    Storage Information:
1858b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1859b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1860b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1861b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1862b5df2d14SHong Zhang 
1863b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1864b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1865b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1866b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1867b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1868b5df2d14SHong Zhang 
1869aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1870aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1871aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1872aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1873aa95bbe8SBarry Smith 
1874b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1875b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1876b5df2d14SHong Zhang 
1877b5df2d14SHong Zhang .vb
1878b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1879b5df2d14SHong Zhang           -------------------
1880b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1881b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1882b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1883b5df2d14SHong Zhang           -------------------
1884b5df2d14SHong Zhang .ve
1885b5df2d14SHong Zhang 
1886b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1887b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18886d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18896d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1890b5df2d14SHong Zhang 
18916d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18926d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1893b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1894b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1895b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1896b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1897b5df2d14SHong Zhang    matrices.
1898b5df2d14SHong Zhang 
1899b5df2d14SHong Zhang    Level: intermediate
1900b5df2d14SHong Zhang 
1901b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1902b5df2d14SHong Zhang 
1903b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1904b5df2d14SHong Zhang @*/
1905be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1906b5df2d14SHong Zhang {
19071302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1908b5df2d14SHong Zhang 
1909b5df2d14SHong Zhang   PetscFunctionBegin;
1910a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1911a23d5eceSKris Buschelman   if (f) {
1912a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1913b5df2d14SHong Zhang   }
1914b5df2d14SHong Zhang   PetscFunctionReturn(0);
1915b5df2d14SHong Zhang }
1916b5df2d14SHong Zhang 
19174a2ae208SSatish Balay #undef __FUNCT__
19184a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1919a30f8f8cSSatish Balay /*@C
1920a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1921a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1922a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1923a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1924a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1925a30f8f8cSSatish Balay 
1926a30f8f8cSSatish Balay    Collective on MPI_Comm
1927a30f8f8cSSatish Balay 
1928a30f8f8cSSatish Balay    Input Parameters:
1929a30f8f8cSSatish Balay +  comm - MPI communicator
1930a30f8f8cSSatish Balay .  bs   - size of blockk
1931a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1932a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1933a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1934a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1935a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1936a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1937a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1938a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1939a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1940a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1941a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19426d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19436d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19446d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1945a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1946a30f8f8cSSatish Balay            submatrix (same for all local rows).
1947a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1948a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1949a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1950a30f8f8cSSatish Balay 
1951a30f8f8cSSatish Balay    Output Parameter:
1952a30f8f8cSSatish Balay .  A - the matrix
1953a30f8f8cSSatish Balay 
1954a30f8f8cSSatish Balay    Options Database Keys:
1955a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1956a30f8f8cSSatish Balay                      block calculations (much slower)
1957a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1958a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1959a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1960a30f8f8cSSatish Balay 
1961175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1962ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1963175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1964175b88e8SBarry Smith 
1965a30f8f8cSSatish Balay    Notes:
1966d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19676d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1968d1be2dadSMatthew Knepley 
1969a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1970a30f8f8cSSatish Balay    (possibly both).
1971a30f8f8cSSatish Balay 
1972a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1973a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1974a30f8f8cSSatish Balay 
197549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197649a6f317SBarry Smith 
1977a30f8f8cSSatish Balay    Storage Information:
1978a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1979a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1980a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1981a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1982a30f8f8cSSatish Balay 
1983a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1984a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1985a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1986a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1987a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1988a30f8f8cSSatish Balay 
1989a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1990a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay .vb
1993a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1994a30f8f8cSSatish Balay           -------------------
1995a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1996a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1997a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1998a30f8f8cSSatish Balay           -------------------
1999a30f8f8cSSatish Balay .ve
2000a30f8f8cSSatish Balay 
2001a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2002a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20036d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20046d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2005a30f8f8cSSatish Balay 
20066d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20076d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2008a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2009a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2010a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2011a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2012a30f8f8cSSatish Balay    matrices.
2013a30f8f8cSSatish Balay 
2014a30f8f8cSSatish Balay    Level: intermediate
2015a30f8f8cSSatish Balay 
2016a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2017a30f8f8cSSatish Balay 
2018a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2019a30f8f8cSSatish Balay @*/
2020a30f8f8cSSatish Balay 
2021be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2022a30f8f8cSSatish Balay {
20236849ba73SBarry Smith   PetscErrorCode ierr;
20241302d50aSBarry Smith   PetscMPIInt    size;
2025a30f8f8cSSatish Balay 
2026a30f8f8cSSatish Balay   PetscFunctionBegin;
2027f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2028f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2029273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2030273d9f13SBarry Smith   if (size > 1) {
2031b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2032b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2033273d9f13SBarry Smith   } else {
2034273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2035273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2036273d9f13SBarry Smith   }
2037a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2038a30f8f8cSSatish Balay }
2039a30f8f8cSSatish Balay 
2040a30f8f8cSSatish Balay 
20414a2ae208SSatish Balay #undef __FUNCT__
20424a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20436849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2044a30f8f8cSSatish Balay {
2045a30f8f8cSSatish Balay   Mat            mat;
2046a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2047dfbe8321SBarry Smith   PetscErrorCode ierr;
2048d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2049387bc808SHong Zhang   PetscScalar    *array;
2050a30f8f8cSSatish Balay 
2051a30f8f8cSSatish Balay   PetscFunctionBegin;
2052a30f8f8cSSatish Balay   *newmat       = 0;
20537adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2054d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20557adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20561d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
205726283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
205826283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2059e1b6402fSHong Zhang 
206082327fa8SHong Zhang   mat->factor       = matin->factor;
2061273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206282327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20637fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20647fff6886SHong Zhang 
2065b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2066a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2067a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2068a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2069a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2070a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2071a30f8f8cSSatish Balay 
2072899cda47SBarry Smith 
2073a30f8f8cSSatish Balay   a->size         = oldmat->size;
2074a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2075a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2076a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2077a30f8f8cSSatish Balay   a->rowindices   = 0;
2078a30f8f8cSSatish Balay   a->rowvalues    = 0;
2079a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2080a30f8f8cSSatish Balay   a->barray       = 0;
2081899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2082899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2083899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2084899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2085a30f8f8cSSatish Balay 
2086a30f8f8cSSatish Balay   /* hash table stuff */
2087a30f8f8cSSatish Balay   a->ht           = 0;
2088a30f8f8cSSatish Balay   a->hd           = 0;
2089a30f8f8cSSatish Balay   a->ht_size      = 0;
2090a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2091a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2092a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2093a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2094a30f8f8cSSatish Balay 
2095899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2096a30f8f8cSSatish Balay   if (oldmat->colmap) {
2097a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2098a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2099a30f8f8cSSatish Balay #else
21001302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21021302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2103a30f8f8cSSatish Balay #endif
2104a30f8f8cSSatish Balay   } else a->colmap = 0;
2105387bc808SHong Zhang 
2106a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21071302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
210852e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21091302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2110a30f8f8cSSatish Balay   } else a->garray = 0;
2111a30f8f8cSSatish Balay 
2112*533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2113a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
211452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2115a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
211652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
211782327fa8SHong Zhang 
211882327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
211952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2122387bc808SHong Zhang 
2123387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21241ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2125387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2126387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21271ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21281ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2129387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21301ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
213452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2136387bc808SHong Zhang 
2137387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2138387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2139387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214182327fa8SHong Zhang 
2142a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2144a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21467adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2147a30f8f8cSSatish Balay   *newmat = mat;
2148a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2149a30f8f8cSSatish Balay }
2150a30f8f8cSSatish Balay 
2151a30f8f8cSSatish Balay #include "petscsys.h"
2152a30f8f8cSSatish Balay 
21534a2ae208SSatish Balay #undef __FUNCT__
21544a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2155a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2156a30f8f8cSSatish Balay {
2157a30f8f8cSSatish Balay   Mat            A;
21586849ba73SBarry Smith   PetscErrorCode ierr;
215913f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216087828ca2SBarry Smith   PetscScalar    *vals,*buf;
2161a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2162a30f8f8cSSatish Balay   MPI_Status     status;
2163e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
216413f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21652fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21661302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21671302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21681302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
216913f74950SBarry Smith   int            fd;
2170a30f8f8cSSatish Balay 
2171a30f8f8cSSatish Balay   PetscFunctionBegin;
217277925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21738c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21748c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2175a30f8f8cSSatish Balay 
2176a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2178a30f8f8cSSatish Balay   if (!rank) {
2179b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2181552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2182a30f8f8cSSatish Balay     if (header[3] < 0) {
218329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2184a30f8f8cSSatish Balay     }
2185a30f8f8cSSatish Balay   }
2186a30f8f8cSSatish Balay 
2187a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2189a30f8f8cSSatish Balay 
219029bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2191a30f8f8cSSatish Balay 
2192a30f8f8cSSatish Balay   /*
2193a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2194a30f8f8cSSatish Balay      divisible by the blocksize
2195a30f8f8cSSatish Balay   */
2196a30f8f8cSSatish Balay   Mbs        = M/bs;
2197a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2198a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2199a30f8f8cSSatish Balay   else                  Mbs++;
2200a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
22011e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2202a30f8f8cSSatish Balay   }
2203a30f8f8cSSatish Balay 
2204a30f8f8cSSatish Balay   /* determine ownership of all rows */
2205a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2206a30f8f8cSSatish Balay   m          = mbs*bs;
220774ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2208e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2209e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   rowners[0] = 0;
2211a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2212a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2213a30f8f8cSSatish Balay   rstart = rowners[rank];
2214a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2215a30f8f8cSSatish Balay 
2216a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22172fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2218a30f8f8cSSatish Balay   if (!rank) {
22191302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2222a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2224a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay   } else {
2227a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   }
2229a30f8f8cSSatish Balay 
22300222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2231a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22321302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22331302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2234a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2235a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2236a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2237a30f8f8cSSatish Balay       }
2238a30f8f8cSSatish Balay     }
2239a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2240a30f8f8cSSatish Balay 
2241a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2242a30f8f8cSSatish Balay     maxnz = 0;
2243a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2244a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2245a30f8f8cSSatish Balay     }
22461302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2247a30f8f8cSSatish Balay 
2248a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2249a30f8f8cSSatish Balay     nz     = procsnz[0];
22501302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay     mycols = ibuf;
2252a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2253a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2254a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2255a30f8f8cSSatish Balay 
2256a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2257a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2258a30f8f8cSSatish Balay       nz   = procsnz[i];
2259a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2260a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2261a30f8f8cSSatish Balay     }
2262a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2263a30f8f8cSSatish Balay     if (size != 1) {
2264a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2265a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2267a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay     }
2269a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22700222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2271a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2272a30f8f8cSSatish Balay     nz = 0;
2273a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2274a30f8f8cSSatish Balay       nz += locrowlens[i];
2275a30f8f8cSSatish Balay     }
22761302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2277a30f8f8cSSatish Balay     mycols = ibuf;
2278a30f8f8cSSatish Balay     /* receive message of column indices*/
2279a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2280a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2282a30f8f8cSSatish Balay   }
2283a30f8f8cSSatish Balay 
2284a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
228574ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
228674ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
228774ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
228874ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
228974ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229074ed9c26SBarry Smith   rowcount = 0;
229174ed9c26SBarry Smith   nzcount  = 0;
2292a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2293a30f8f8cSSatish Balay     dcount  = 0;
2294a30f8f8cSSatish Balay     odcount = 0;
2295a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2296a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2297a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22980222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2299a30f8f8cSSatish Balay         if (!mask[tmp]) {
2300a30f8f8cSSatish Balay           mask[tmp] = 1;
23010222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23020222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2303a30f8f8cSSatish Balay         }
2304a30f8f8cSSatish Balay       }
2305a30f8f8cSSatish Balay       rowcount++;
2306a30f8f8cSSatish Balay     }
2307a30f8f8cSSatish Balay 
23080222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23090222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2310a30f8f8cSSatish Balay 
2311a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2312a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2313a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2314a30f8f8cSSatish Balay   }
2315a30f8f8cSSatish Balay 
2316a30f8f8cSSatish Balay   /* create our matrix */
2317f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2318f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
231922191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232017fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
232122191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2322a30f8f8cSSatish Balay 
2323a30f8f8cSSatish Balay   if (!rank) {
232487828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2325a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2326a30f8f8cSSatish Balay     nz = procsnz[0];
2327a30f8f8cSSatish Balay     vals = buf;
2328a30f8f8cSSatish Balay     mycols = ibuf;
2329a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2330a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2331a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2332a30f8f8cSSatish Balay 
2333a30f8f8cSSatish Balay     /* insert into matrix */
2334a30f8f8cSSatish Balay     jj      = rstart*bs;
2335a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23367e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2337a30f8f8cSSatish Balay       mycols += locrowlens[i];
2338a30f8f8cSSatish Balay       vals   += locrowlens[i];
2339a30f8f8cSSatish Balay       jj++;
2340a30f8f8cSSatish Balay     }
23417e06b45fSHong Zhang 
2342a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2343a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2344a30f8f8cSSatish Balay       nz   = procsnz[i];
2345a30f8f8cSSatish Balay       vals = buf;
2346a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23477adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2348a30f8f8cSSatish Balay     }
2349a30f8f8cSSatish Balay     /* the last proc */
2350a30f8f8cSSatish Balay     if (size != 1){
2351a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2352a30f8f8cSSatish Balay       vals = buf;
2353a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2354a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23557adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2356a30f8f8cSSatish Balay     }
2357a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23587e06b45fSHong Zhang 
2359a30f8f8cSSatish Balay   } else {
2360a30f8f8cSSatish Balay     /* receive numeric values */
236187828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2362a30f8f8cSSatish Balay 
2363a30f8f8cSSatish Balay     /* receive message of values*/
2364a30f8f8cSSatish Balay     vals   = buf;
2365a30f8f8cSSatish Balay     mycols = ibuf;
23667adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2367a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
236829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2369a30f8f8cSSatish Balay 
2370a30f8f8cSSatish Balay     /* insert into matrix */
2371a30f8f8cSSatish Balay     jj      = rstart*bs;
2372a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2373a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2374a30f8f8cSSatish Balay       mycols += locrowlens[i];
2375a30f8f8cSSatish Balay       vals   += locrowlens[i];
2376a30f8f8cSSatish Balay       jj++;
2377a30f8f8cSSatish Balay     }
2378a30f8f8cSSatish Balay   }
23797e06b45fSHong Zhang 
2380a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2381a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2382a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
238374ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
238474ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
238574ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2387a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238822191285SKris Buschelman   *newmat = A;
2389a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2390a30f8f8cSSatish Balay }
2391a30f8f8cSSatish Balay 
23924a2ae208SSatish Balay #undef __FUNCT__
23934a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2394dcf5cc72SBarry Smith /*XXXXX@
2395a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay    Input Parameters:
2398a30f8f8cSSatish Balay .  mat  - the matrix
2399a30f8f8cSSatish Balay .  fact - factor
2400a30f8f8cSSatish Balay 
2401a30f8f8cSSatish Balay    Collective on Mat
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay    Level: advanced
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay   Notes:
2406a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2407a30f8f8cSSatish Balay 
2408a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2409a30f8f8cSSatish Balay 
2410a30f8f8cSSatish Balay .seealso: MatSetOption()
2411dcf5cc72SBarry Smith @XXXXX*/
2412dcf5cc72SBarry Smith 
241324d5174aSHong Zhang 
24144a2ae208SSatish Balay #undef __FUNCT__
2415985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2416985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
241724d5174aSHong Zhang {
241824d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2419f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2420ca54ac64SHong Zhang   PetscReal      atmp;
242187828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2422dfbe8321SBarry Smith   PetscErrorCode ierr;
24231302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24241302d50aSBarry Smith   PetscMPIInt    rank,size;
24251302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
242687828ca2SBarry Smith   PetscScalar    *va;
24278a1c53f2SBarry Smith   MatScalar      *ba;
2428f4c0e9e4SHong Zhang   MPI_Status     stat;
242924d5174aSHong Zhang 
243024d5174aSHong Zhang   PetscFunctionBegin;
2431985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2432985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24331ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2434f4c0e9e4SHong Zhang 
24357adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24367adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2437f4c0e9e4SHong Zhang 
2438d0f46423SBarry Smith   bs   = A->rmap->bs;
2439f4c0e9e4SHong Zhang   mbs  = a->mbs;
2440f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2441f4c0e9e4SHong Zhang   ba   = b->a;
2442f4c0e9e4SHong Zhang   bi   = b->i;
2443f4c0e9e4SHong Zhang   bj   = b->j;
2444f4c0e9e4SHong Zhang 
2445f4c0e9e4SHong Zhang   /* find ownerships */
2446d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2447f4c0e9e4SHong Zhang 
2448f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
244982502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2450ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2451f4c0e9e4SHong Zhang 
2452f4c0e9e4SHong Zhang   /* row_max for B */
2453b8475685SHong Zhang   if (rank != size-1){
2454f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2455f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2456f4c0e9e4SHong Zhang       brow  = bs*i;
2457f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2458f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2459f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2460ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246104d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2462f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2463f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2464ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2465ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2466f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2467f4c0e9e4SHong Zhang           }
2468f4c0e9e4SHong Zhang         }
2469f4c0e9e4SHong Zhang         bj++;
2470f4c0e9e4SHong Zhang       }
2471f4c0e9e4SHong Zhang     }
2472f4c0e9e4SHong Zhang 
2473f4c0e9e4SHong Zhang     /* send values to its owners */
2474f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2475f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2476ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24777adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2478ca54ac64SHong Zhang     }
2479f4c0e9e4SHong Zhang   }
2480f4c0e9e4SHong Zhang 
2481f4c0e9e4SHong Zhang   /* receive values */
2482ca54ac64SHong Zhang   if (rank){
2483f4c0e9e4SHong Zhang     rvalues = work;
2484ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2485f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24867adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2487f4c0e9e4SHong Zhang       /* process values */
2488f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2489ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2490f4c0e9e4SHong Zhang       }
2491f4c0e9e4SHong Zhang     }
2492ca54ac64SHong Zhang   }
2493f4c0e9e4SHong Zhang 
24941ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2495ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
249624d5174aSHong Zhang   PetscFunctionReturn(0);
249724d5174aSHong Zhang }
24982798e883SHong Zhang 
24992798e883SHong Zhang #undef __FUNCT__
250041f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
250141f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25022798e883SHong Zhang {
25032798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2504dfbe8321SBarry Smith   PetscErrorCode ierr;
2505d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2506fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2507ffe4fb16SHong Zhang   Vec            bb1;
2508ffe4fb16SHong Zhang 
2509ffe4fb16SHong Zhang   PetscFunctionBegin;
251077431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2511b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2512ffe4fb16SHong Zhang 
2513a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
251441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2515a2b30743SBarry Smith     PetscFunctionReturn(0);
2516a2b30743SBarry Smith   }
2517a2b30743SBarry Smith 
2518ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2519ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
252041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2521ffe4fb16SHong Zhang       its--;
2522ffe4fb16SHong Zhang     }
2523ffe4fb16SHong Zhang 
2524ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2525ffe4fb16SHong Zhang     while (its--){
2526ffe4fb16SHong Zhang 
2527ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2528ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2529ffe4fb16SHong Zhang 
2530ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25311ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25321ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25341ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang 
2536efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang 
2538ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25391ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25401ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2541ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25421ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2543ffe4fb16SHong Zhang 
2544ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2545fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2546ffe4fb16SHong Zhang 
2547ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25481ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25491ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2550ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2551ffe4fb16SHong Zhang 
2552ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2553ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2554ffe4fb16SHong Zhang 
2555ffe4fb16SHong Zhang       /* local diagonal sweep */
255641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2557ffe4fb16SHong Zhang     }
2558ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2559fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2561fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2563fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2564fa22f6d0SBarry Smith     Vec               xx1;
2565fa22f6d0SBarry Smith     PetscTruth        hasop;
256620f1ed55SBarry Smith     const PetscScalar *diag;
2567887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
256820f1ed55SBarry Smith     PetscInt          i,n;
2569fa22f6d0SBarry Smith 
2570fa22f6d0SBarry Smith     if (!mat->xx1) {
2571fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2572fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2573fa22f6d0SBarry Smith     }
2574fa22f6d0SBarry Smith     xx1 = mat->xx1;
2575fa22f6d0SBarry Smith     bb1 = mat->bb1;
2576fa22f6d0SBarry Smith 
257741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2578fa22f6d0SBarry Smith 
2579fa22f6d0SBarry Smith     if (!mat->diag) {
2580effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2581fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2582fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2583fa22f6d0SBarry Smith     }
2584fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2585fa22f6d0SBarry Smith 
2586fa22f6d0SBarry Smith     if (hasop) {
2587fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2588887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
258920f1ed55SBarry Smith     } else {
259020f1ed55SBarry Smith       /*
259120f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
259220f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2593887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259420f1ed55SBarry Smith       */
259520f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
259620f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
259720f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
259820f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
259920f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2600887ee2caSBarry Smith       if (omega == 1.0) {
260120f1ed55SBarry Smith 	for (i=0; i<n; i++) {
260220f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
260320f1ed55SBarry Smith 	}
260420f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2605887ee2caSBarry Smith       } else {
2606887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2607887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2608887ee2caSBarry Smith 	}
2609887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2610887ee2caSBarry Smith       }
261120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
261220f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
261320f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
261420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
261520f1ed55SBarry Smith     }
2616fa22f6d0SBarry Smith 
2617fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2618fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2619fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2620fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2622fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2623fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2624fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2625fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2627effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2628fa22f6d0SBarry Smith 
2629fa22f6d0SBarry Smith     /* local sweep */
263041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2631fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2632ffe4fb16SHong Zhang   } else {
2633ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2634ffe4fb16SHong Zhang   }
2635ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2636ffe4fb16SHong Zhang }
2637ffe4fb16SHong Zhang 
2638ffe4fb16SHong Zhang #undef __FUNCT__
263941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
264041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2641ffe4fb16SHong Zhang {
2642ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2643dfbe8321SBarry Smith   PetscErrorCode ierr;
26442798e883SHong Zhang   Vec            lvec1,bb1;
26452798e883SHong Zhang 
26462798e883SHong Zhang   PetscFunctionBegin;
264777431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2648b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26492798e883SHong Zhang 
2650c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26512798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
265241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26532798e883SHong Zhang       its--;
26542798e883SHong Zhang     }
26552798e883SHong Zhang 
26562798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26572798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26582798e883SHong Zhang     while (its--){
2659ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26602798e883SHong Zhang 
26612798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26622798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2663efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26642798e883SHong Zhang 
2665ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26662798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2667ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26682798e883SHong Zhang 
26692798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2670efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26712798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26722798e883SHong Zhang 
2673ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26742798e883SHong Zhang 
2675c14dc6b6SHong Zhang       /* diagonal sweep */
267641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26772798e883SHong Zhang     }
26782798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26792798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2680c14dc6b6SHong Zhang   } else {
2681c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2682c14dc6b6SHong Zhang   }
26832798e883SHong Zhang   PetscFunctionReturn(0);
26842798e883SHong Zhang }
26852798e883SHong Zhang 
2686