xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 547795f9f637a72c8a9fe35eb9ea2bca0ad69cfa)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
146d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
147d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
169a30f8f8cSSatish Balay 
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
2610880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++  = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3080880e062SHong Zhang         }
3090880e062SHong Zhang         else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3230880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
3260880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3300880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3360880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col =  in[j];
3380880e062SHong Zhang             }
3390880e062SHong Zhang           }
3400880e062SHong Zhang           else col = in[j];
341e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3420880e062SHong Zhang         }
3430880e062SHong Zhang       }
3440880e062SHong Zhang     } else {
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
36897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
376a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data --;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     } else {
39629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
397a30f8f8cSSatish Balay     }
398a30f8f8cSSatish Balay   }
399a30f8f8cSSatish Balay  PetscFunctionReturn(0);
400a30f8f8cSSatish Balay }
401a30f8f8cSSatish Balay 
4024a2ae208SSatish Balay #undef __FUNCT__
4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
405a30f8f8cSSatish Balay {
406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
407dfbe8321SBarry Smith   PetscErrorCode ierr;
408a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
409a30f8f8cSSatish Balay 
410a30f8f8cSSatish Balay   PetscFunctionBegin;
411a30f8f8cSSatish Balay   if (baij->size == 1) {
412a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
413a30f8f8cSSatish Balay   } else {
414a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
415f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
418a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4207adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
422a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4230b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4240b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4250b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4260b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
427899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
428d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4290b8dc8d2SHong Zhang       MatScalar    *v;
4300b8dc8d2SHong Zhang 
431d0f46423SBarry Smith       ierr  = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
432d0f46423SBarry Smith       rsum2 = rsum + mat->cmap->N;
433d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4430b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4600b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
4720b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
473a30f8f8cSSatish Balay     } else {
47429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
475a30f8f8cSSatish Balay     }
476a30f8f8cSSatish Balay   }
477a30f8f8cSSatish Balay   PetscFunctionReturn(0);
478a30f8f8cSSatish Balay }
479a30f8f8cSSatish Balay 
4804a2ae208SSatish Balay #undef __FUNCT__
4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
483a30f8f8cSSatish Balay {
484a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
485dfbe8321SBarry Smith   PetscErrorCode ierr;
4861302d50aSBarry Smith   PetscInt       nstash,reallocs;
487a30f8f8cSSatish Balay   InsertMode     addv;
488a30f8f8cSSatish Balay 
489a30f8f8cSSatish Balay   PetscFunctionBegin;
490a30f8f8cSSatish Balay   if (baij->donotstash) {
491a30f8f8cSSatish Balay     PetscFunctionReturn(0);
492a30f8f8cSSatish Balay   }
493a30f8f8cSSatish Balay 
494a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4957adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
496a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
49729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
498a30f8f8cSSatish Balay   }
499a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
500a30f8f8cSSatish Balay 
501d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5021e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
503a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   PetscFunctionReturn(0);
508a30f8f8cSSatish Balay }
509a30f8f8cSSatish Balay 
5104a2ae208SSatish Balay #undef __FUNCT__
5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
513a30f8f8cSSatish Balay {
514a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
515a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5166849ba73SBarry Smith   PetscErrorCode ierr;
51713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
518e44c0bd4SBarry Smith   PetscInt       *row,*col;
519e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52013f74950SBarry Smith   PetscMPIInt    n;
521a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
522a30f8f8cSSatish Balay   MatScalar      *val;
523a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
524a30f8f8cSSatish Balay 
52591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
526a30f8f8cSSatish Balay   PetscFunctionBegin;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay   if (!baij->donotstash) {
529a30f8f8cSSatish Balay     while (1) {
530a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       if (!flg) break;
532a30f8f8cSSatish Balay 
533a30f8f8cSSatish Balay       for (i=0; i<n;) {
534a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
535a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
536a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
537a30f8f8cSSatish Balay         else       ncols = n-i;
538a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
539dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
540a30f8f8cSSatish Balay         i = j;
541a30f8f8cSSatish Balay       }
542a30f8f8cSSatish Balay     }
543a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
545a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
546a30f8f8cSSatish Balay        restore the original flags */
547a30f8f8cSSatish Balay     r1 = baij->roworiented;
548a30f8f8cSSatish Balay     r2 = a->roworiented;
54991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
550a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
551a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
553a30f8f8cSSatish Balay     while (1) {
554a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       if (!flg) break;
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay       for (i=0; i<n;) {
558a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
559a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
560a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
561a30f8f8cSSatish Balay         else       ncols = n-i;
562dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
563a30f8f8cSSatish Balay         i = j;
564a30f8f8cSSatish Balay       }
565a30f8f8cSSatish Balay     }
566a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
576a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
577a30f8f8cSSatish Balay   /*
578a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
579a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
580a30f8f8cSSatish Balay   */
581a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5827adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
584c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     }
586a30f8f8cSSatish Balay   }
587a30f8f8cSSatish Balay 
588a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
590a30f8f8cSSatish Balay   }
59191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
595a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   baij->rowvalues = 0;
5975222a1afSHong Zhang 
598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
599a30f8f8cSSatish Balay }
600a30f8f8cSSatish Balay 
601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
605a30f8f8cSSatish Balay {
606a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
607dfbe8321SBarry Smith   PetscErrorCode    ierr;
608d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6091302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
611b0a32e0cSBarry Smith   PetscViewer       sviewer;
612f3ef73ceSBarry Smith   PetscViewerFormat format;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
61532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
616fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61732077d6dSBarry Smith   if (iascii) {
618b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
619456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
620a30f8f8cSSatish Balay       MatInfo info;
6217adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
624d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
625d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       PetscFunctionReturn(0);
634fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
638c1490034SHong Zhang       PetscFunctionReturn(0);
639a30f8f8cSSatish Balay     }
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   if (isdraw) {
643b0a32e0cSBarry Smith     PetscDraw  draw;
644a30f8f8cSSatish Balay     PetscTruth isnull;
645b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
646b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   if (size == 1) {
6507adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
652a30f8f8cSSatish Balay   } else {
653a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
654a30f8f8cSSatish Balay     Mat          A;
65565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
657d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
658a30f8f8cSSatish Balay     MatScalar    *a;
659a30f8f8cSSatish Balay 
660f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6617adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     if (!rank) {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     } else {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     }
667f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
668d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay     /* copy over the A part */
67265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
673a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6741302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
677e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
678a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
679a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
680e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
681a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
682dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
683a30f8f8cSSatish Balay           col++; a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
693a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
698a30f8f8cSSatish Balay           col++; a += bs;
699a30f8f8cSSatish Balay         }
700a30f8f8cSSatish Balay       }
701a30f8f8cSSatish Balay     }
702a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     /*
706a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
707b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
708a30f8f8cSSatish Balay     */
709b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71065d70643SHong Zhang     if (!rank) {
7117adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     }
714b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay   PetscFunctionReturn(0);
718a30f8f8cSSatish Balay }
719a30f8f8cSSatish Balay 
7204a2ae208SSatish Balay #undef __FUNCT__
7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
723a30f8f8cSSatish Balay {
724dfbe8321SBarry Smith   PetscErrorCode ierr;
72532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   PetscFunctionBegin;
72832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
729fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
730b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
731fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
733a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   } else {
7351302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay   PetscFunctionReturn(0);
738a30f8f8cSSatish Balay }
739a30f8f8cSSatish Balay 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
743a30f8f8cSSatish Balay {
744a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   PetscFunctionBegin;
748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
749d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
750a30f8f8cSSatish Balay #endif
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7569c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #else
75805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
761a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
762a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76340781036SHong Zhang   if (baij->slvec0) {
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76640781036SHong Zhang   }
76740781036SHong Zhang   if (baij->slvec1) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77140781036SHong Zhang   }
77240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
776fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
778fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
779a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
78005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
781a30f8f8cSSatish Balay #endif
78259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
784899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
786901853e0SKris Buschelman 
787dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
793a30f8f8cSSatish Balay }
794a30f8f8cSSatish Balay 
7954a2ae208SSatish Balay #undef __FUNCT__
796*547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
797*547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
798*547795f9SHong Zhang {
799*547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
800*547795f9SHong Zhang   PetscErrorCode ierr;
801*547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
802*547795f9SHong Zhang   PetscScalar    *x,*from;
803*547795f9SHong Zhang 
804*547795f9SHong Zhang   PetscFunctionBegin;
805*547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
806*547795f9SHong Zhang   if (nt != A->cmap->n) {
807*547795f9SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
808*547795f9SHong Zhang   }
809*547795f9SHong Zhang 
810*547795f9SHong Zhang   /* diagonal part */
811*547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812*547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813*547795f9SHong Zhang 
814*547795f9SHong Zhang   /* subdiagonal part */
815*547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816*547795f9SHong Zhang 
817*547795f9SHong Zhang   /* copy x into the vec slvec0 */
818*547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
819*547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820*547795f9SHong Zhang 
821*547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822*547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
823*547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824*547795f9SHong Zhang 
825*547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826*547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827*547795f9SHong Zhang   /* supperdiagonal part */
828*547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829*547795f9SHong Zhang   PetscFunctionReturn(0);
830*547795f9SHong Zhang }
831*547795f9SHong Zhang 
832*547795f9SHong Zhang #undef __FUNCT__
833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
835a9d4b620SHong Zhang {
836a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
838d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
839fa22f6d0SBarry Smith   PetscScalar    *x,*from;
840a9d4b620SHong Zhang 
841a9d4b620SHong Zhang   PetscFunctionBegin;
842a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
843d0f46423SBarry Smith   if (nt != A->cmap->n) {
844a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
845a9d4b620SHong Zhang   }
846a9d4b620SHong Zhang 
847a9d4b620SHong Zhang   /* diagonal part */
848a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
849fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
850a9d4b620SHong Zhang 
851a9d4b620SHong Zhang   /* subdiagonal part */
852a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
853fc165ae2SBarry Smith 
854a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8551ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8561ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
857a9d4b620SHong Zhang 
858fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
859fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8601ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
861fc165ae2SBarry Smith 
862fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
863ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
864a9d4b620SHong Zhang   /* supperdiagonal part */
865a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
866a9d4b620SHong Zhang   PetscFunctionReturn(0);
867a9d4b620SHong Zhang }
868a9d4b620SHong Zhang 
869a9d4b620SHong Zhang #undef __FUNCT__
87040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
871dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
872a30f8f8cSSatish Balay {
873a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
874dfbe8321SBarry Smith   PetscErrorCode ierr;
8751302d50aSBarry Smith   PetscInt       nt;
876a30f8f8cSSatish Balay 
877a30f8f8cSSatish Balay   PetscFunctionBegin;
878a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
879d0f46423SBarry Smith   if (nt != A->cmap->n) {
88029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
881a30f8f8cSSatish Balay   }
882a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
883d0f46423SBarry Smith   if (nt != A->rmap->N) {
88429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
885a30f8f8cSSatish Balay   }
88665d70643SHong Zhang 
887ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
888b941877fSHong Zhang   /* do diagonal part */
889b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
890b941877fSHong Zhang   /* do supperdiagonal part */
891ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
892b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
893b941877fSHong Zhang   /* do subdiagonal part */
894b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
895ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
896ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89765d70643SHong Zhang 
898a30f8f8cSSatish Balay   PetscFunctionReturn(0);
899a30f8f8cSSatish Balay }
900a30f8f8cSSatish Balay 
9014a2ae208SSatish Balay #undef __FUNCT__
9024a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
903dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
904a30f8f8cSSatish Balay {
905de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
906dfbe8321SBarry Smith   PetscErrorCode ierr;
907d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
908a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
909a9d4b620SHong Zhang 
910a9d4b620SHong Zhang   PetscFunctionBegin;
911a9d4b620SHong Zhang   /*
9127adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9137adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
914a9d4b620SHong Zhang   */
915a9d4b620SHong Zhang   /* diagonal part */
916a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9172dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
918a9d4b620SHong Zhang 
919a9d4b620SHong Zhang   /* subdiagonal part */
920a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
921a9d4b620SHong Zhang 
922a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9231ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9241ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
925a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9261ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
927a9d4b620SHong Zhang 
928ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9291ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
930ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
931a9d4b620SHong Zhang 
932a9d4b620SHong Zhang   /* supperdiagonal part */
933a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
934a9d4b620SHong Zhang 
935a9d4b620SHong Zhang   PetscFunctionReturn(0);
936a9d4b620SHong Zhang }
937a9d4b620SHong Zhang 
938a9d4b620SHong Zhang #undef __FUNCT__
939a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
940dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
941a9d4b620SHong Zhang {
942a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
943dfbe8321SBarry Smith   PetscErrorCode ierr;
944a30f8f8cSSatish Balay 
945a30f8f8cSSatish Balay   PetscFunctionBegin;
946ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
947b941877fSHong Zhang   /* do diagonal part */
948b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
949b941877fSHong Zhang   /* do supperdiagonal part */
950ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
951de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
952de8b6608SHong Zhang 
953b941877fSHong Zhang   /* do subdiagonal part */
954a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
955ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
956ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
957aa482183SHong Zhang 
958a30f8f8cSSatish Balay   PetscFunctionReturn(0);
959a30f8f8cSSatish Balay }
960a30f8f8cSSatish Balay 
961a30f8f8cSSatish Balay /*
962a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
963a30f8f8cSSatish Balay    diagonal block
964a30f8f8cSSatish Balay */
9654a2ae208SSatish Balay #undef __FUNCT__
9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
968a30f8f8cSSatish Balay {
969a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
970dfbe8321SBarry Smith   PetscErrorCode ierr;
971a30f8f8cSSatish Balay 
972a30f8f8cSSatish Balay   PetscFunctionBegin;
973d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
974a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
975a30f8f8cSSatish Balay   PetscFunctionReturn(0);
976a30f8f8cSSatish Balay }
977a30f8f8cSSatish Balay 
9784a2ae208SSatish Balay #undef __FUNCT__
9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
981a30f8f8cSSatish Balay {
982a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
983dfbe8321SBarry Smith   PetscErrorCode ierr;
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay   PetscFunctionBegin;
986f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
987f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
989a30f8f8cSSatish Balay }
990a30f8f8cSSatish Balay 
9914a2ae208SSatish Balay #undef __FUNCT__
9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
994a30f8f8cSSatish Balay {
995d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
996d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
997d0d4cfc2SHong Zhang   PetscErrorCode ierr;
998d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
999d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1000899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1001d0d4cfc2SHong Zhang 
1002a30f8f8cSSatish Balay   PetscFunctionBegin;
10034eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1004d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1005d0d4cfc2SHong Zhang 
1006d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1007d0d4cfc2SHong Zhang     /*
1008d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1009d0d4cfc2SHong Zhang     */
1010d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1011d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1012d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1013d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1014d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1015d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1016d0d4cfc2SHong Zhang     }
1017d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1018d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1019d0d4cfc2SHong Zhang   }
1020d0d4cfc2SHong Zhang 
1021d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1022d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1023d0d4cfc2SHong Zhang 
1024d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1025d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1026d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1027d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1028d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1029d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1030d0d4cfc2SHong Zhang 
1031d0d4cfc2SHong Zhang   cmap  = mat->garray;
1032d0d4cfc2SHong Zhang   if (v  || idx) {
1033d0d4cfc2SHong Zhang     if (nztot) {
1034d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1035d0d4cfc2SHong Zhang       PetscInt imark = -1;
1036d0d4cfc2SHong Zhang       if (v) {
1037d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1038d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1039d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1040d0d4cfc2SHong Zhang           else break;
1041d0d4cfc2SHong Zhang         }
1042d0d4cfc2SHong Zhang         imark = i;
1043d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1044d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1045d0d4cfc2SHong Zhang       }
1046d0d4cfc2SHong Zhang       if (idx) {
1047d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1048d0d4cfc2SHong Zhang         if (imark > -1) {
1049d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1050d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1051d0d4cfc2SHong Zhang           }
1052d0d4cfc2SHong Zhang         } else {
1053d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1054d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1055d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1056d0d4cfc2SHong Zhang             else break;
1057d0d4cfc2SHong Zhang           }
1058d0d4cfc2SHong Zhang           imark = i;
1059d0d4cfc2SHong Zhang         }
1060d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1061d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1062d0d4cfc2SHong Zhang       }
1063d0d4cfc2SHong Zhang     } else {
1064d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1065d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1066d0d4cfc2SHong Zhang     }
1067d0d4cfc2SHong Zhang   }
1068d0d4cfc2SHong Zhang   *nz = nztot;
1069d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1070d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1071a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1072a30f8f8cSSatish Balay }
1073a30f8f8cSSatish Balay 
10744a2ae208SSatish Balay #undef __FUNCT__
10754a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10761302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1077a30f8f8cSSatish Balay {
1078a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1079a30f8f8cSSatish Balay 
1080a30f8f8cSSatish Balay   PetscFunctionBegin;
1081abc0a331SBarry Smith   if (!baij->getrowactive) {
1082abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1083a30f8f8cSSatish Balay   }
1084a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1085a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1086a30f8f8cSSatish Balay }
1087a30f8f8cSSatish Balay 
10884a2ae208SSatish Balay #undef __FUNCT__
1089d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1090d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1091d0d4cfc2SHong Zhang {
1092d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1093d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1094d0d4cfc2SHong Zhang 
1095d0d4cfc2SHong Zhang   PetscFunctionBegin;
1096d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1097d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1098d0d4cfc2SHong Zhang }
1099d0d4cfc2SHong Zhang #undef __FUNCT__
1100d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1101d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1102d0d4cfc2SHong Zhang {
1103d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1104d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1105d0d4cfc2SHong Zhang 
1106d0d4cfc2SHong Zhang   PetscFunctionBegin;
1107d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1108d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1109d0d4cfc2SHong Zhang }
1110d0d4cfc2SHong Zhang 
1111d0d4cfc2SHong Zhang #undef __FUNCT__
111299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
111399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111499cafbc1SBarry Smith {
111599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111699cafbc1SBarry Smith   PetscErrorCode ierr;
111799cafbc1SBarry Smith 
111899cafbc1SBarry Smith   PetscFunctionBegin;
111999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
112099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
112199cafbc1SBarry Smith   PetscFunctionReturn(0);
112299cafbc1SBarry Smith }
112399cafbc1SBarry Smith 
112499cafbc1SBarry Smith #undef __FUNCT__
112599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112799cafbc1SBarry Smith {
112899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112999cafbc1SBarry Smith   PetscErrorCode ierr;
113099cafbc1SBarry Smith 
113199cafbc1SBarry Smith   PetscFunctionBegin;
113299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
113399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113499cafbc1SBarry Smith   PetscFunctionReturn(0);
113599cafbc1SBarry Smith }
113699cafbc1SBarry Smith 
113799cafbc1SBarry Smith #undef __FUNCT__
11384a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1139dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1140a30f8f8cSSatish Balay {
1141a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1142dfbe8321SBarry Smith   PetscErrorCode ierr;
1143a30f8f8cSSatish Balay 
1144a30f8f8cSSatish Balay   PetscFunctionBegin;
1145a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1146a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1147a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1148a30f8f8cSSatish Balay }
1149a30f8f8cSSatish Balay 
11504a2ae208SSatish Balay #undef __FUNCT__
11514a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1152dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1153a30f8f8cSSatish Balay {
1154a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1155a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1156dfbe8321SBarry Smith   PetscErrorCode ierr;
1157a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1158a30f8f8cSSatish Balay 
1159a30f8f8cSSatish Balay   PetscFunctionBegin;
1160d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1161a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1162a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1163a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1164a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1165a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1166a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1167a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1168a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1169a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1170a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1171a30f8f8cSSatish Balay     info->memory       = isend[3];
1172a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1173a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11747adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1175a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1176a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1177a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1178a30f8f8cSSatish Balay     info->memory       = irecv[3];
1179a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1180a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11817adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1182a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1183a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1184a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1185a30f8f8cSSatish Balay     info->memory       = irecv[3];
1186a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1187a30f8f8cSSatish Balay   } else {
118877431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1189a30f8f8cSSatish Balay   }
1190a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1191a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1192a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1193a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1194a30f8f8cSSatish Balay }
1195a30f8f8cSSatish Balay 
11964a2ae208SSatish Balay #undef __FUNCT__
11974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11984e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1199a30f8f8cSSatish Balay {
1200a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1201d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1202dfbe8321SBarry Smith   PetscErrorCode ierr;
1203a30f8f8cSSatish Balay 
1204a30f8f8cSSatish Balay   PetscFunctionBegin;
1205e98b92d7SKris Buschelman   switch (op) {
1206512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1207e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1209a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1210e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12114e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12124e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12154e0d8c25SBarry Smith     a->roworiented = flg;
12164e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12174e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1218e98b92d7SKris Buschelman     break;
12194e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1220290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1221e98b92d7SKris Buschelman     break;
1222e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12234e0d8c25SBarry Smith     a->donotstash = flg;
1224e98b92d7SKris Buschelman     break;
1225e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12264e0d8c25SBarry Smith     a->ht_flag = flg;
1227e98b92d7SKris Buschelman     break;
12289a4540c5SBarry Smith   case MAT_HERMITIAN:
1229*547795f9SHong Zhang     if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1230eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1231*547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1232eeffb40dSHong Zhang     break;
123377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1234eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1235eeffb40dSHong Zhang     break;
123677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1237eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1238eeffb40dSHong Zhang     break;
12399a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12404e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1241290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124277e54ba9SKris Buschelman     break;
1243d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12444e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1245d0d4cfc2SHong Zhang     break;
1246d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12474e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1248d0d4cfc2SHong Zhang     break;
1249d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12504e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1251d0d4cfc2SHong Zhang     break;
1252e98b92d7SKris Buschelman   default:
1253ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1254a30f8f8cSSatish Balay   }
1255a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1256a30f8f8cSSatish Balay }
1257a30f8f8cSSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12598115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1260fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1261a30f8f8cSSatish Balay {
1262dfbe8321SBarry Smith   PetscErrorCode ierr;
1263a30f8f8cSSatish Balay   PetscFunctionBegin;
1264815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1265999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1266fc4dec0aSBarry Smith   }
12678115998fSBarry Smith   PetscFunctionReturn(0);
1268a30f8f8cSSatish Balay }
1269a30f8f8cSSatish Balay 
12704a2ae208SSatish Balay #undef __FUNCT__
12714a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1272dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1273a30f8f8cSSatish Balay {
1274a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1275a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1276dfbe8321SBarry Smith   PetscErrorCode ierr;
12775e90f9d9SHong Zhang   PetscInt       nv,m,n;
1278b3bf805bSHong Zhang   PetscTruth     flg;
1279a30f8f8cSSatish Balay 
1280a30f8f8cSSatish Balay   PetscFunctionBegin;
1281a30f8f8cSSatish Balay   if (ll != rr){
1282b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1283b3bf805bSHong Zhang     if (!flg)
128429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1285a30f8f8cSSatish Balay   }
1286b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1287b3bf805bSHong Zhang 
12885e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12895e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1290b3bf805bSHong Zhang 
12915e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12925e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12935e90f9d9SHong Zhang 
1294ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12955e90f9d9SHong Zhang 
12965e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1297a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12985e90f9d9SHong Zhang 
12995e90f9d9SHong Zhang   /* scale the diagonal part */
1300a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1301a30f8f8cSSatish Balay 
13025e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1303ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1304a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1306a30f8f8cSSatish Balay }
1307a30f8f8cSSatish Balay 
13084a2ae208SSatish Balay #undef __FUNCT__
13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1311a30f8f8cSSatish Balay {
1312f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1313dfbe8321SBarry Smith   PetscErrorCode ierr;
1314a30f8f8cSSatish Balay 
1315a30f8f8cSSatish Balay   PetscFunctionBegin;
1316a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1317a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1318a30f8f8cSSatish Balay }
1319a30f8f8cSSatish Balay 
13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1321a30f8f8cSSatish Balay 
13224a2ae208SSatish Balay #undef __FUNCT__
13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1324dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1325a30f8f8cSSatish Balay {
1326a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1327a30f8f8cSSatish Balay   Mat            a,b,c,d;
1328a30f8f8cSSatish Balay   PetscTruth     flg;
1329dfbe8321SBarry Smith   PetscErrorCode ierr;
1330a30f8f8cSSatish Balay 
1331a30f8f8cSSatish Balay   PetscFunctionBegin;
1332a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1333a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1334a30f8f8cSSatish Balay 
1335a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1336abc0a331SBarry Smith   if (flg) {
1337a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay   }
13397adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1341a30f8f8cSSatish Balay }
1342a30f8f8cSSatish Balay 
13434a2ae208SSatish Balay #undef __FUNCT__
13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13463c896bc6SHong Zhang {
13473c896bc6SHong Zhang   PetscErrorCode ierr;
13483c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13493c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13503c896bc6SHong Zhang 
13513c896bc6SHong Zhang   PetscFunctionBegin;
13523c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13533c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1354d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13553c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1356d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang   } else {
13583c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13593c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13603c896bc6SHong Zhang   }
13613c896bc6SHong Zhang   PetscFunctionReturn(0);
13623c896bc6SHong Zhang }
13633c896bc6SHong Zhang 
13643c896bc6SHong Zhang #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1366dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1367273d9f13SBarry Smith {
1368dfbe8321SBarry Smith   PetscErrorCode ierr;
1369273d9f13SBarry Smith 
1370273d9f13SBarry Smith   PetscFunctionBegin;
1371db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1372273d9f13SBarry Smith   PetscFunctionReturn(0);
1373273d9f13SBarry Smith }
1374a5e6ed63SBarry Smith 
13754fe895cdSHong Zhang #include "petscblaslapack.h"
13764fe895cdSHong Zhang #undef __FUNCT__
13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13794fe895cdSHong Zhang {
13804fe895cdSHong Zhang   PetscErrorCode ierr;
13814fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13824fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13834fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13844fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13854fe895cdSHong Zhang 
13864fe895cdSHong Zhang   PetscFunctionBegin;
13874fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13884fe895cdSHong Zhang     PetscScalar alpha = a;
13894fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13904fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13910805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13934fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13944fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13950805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13964fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13974fe895cdSHong Zhang   } else {
1398d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13994fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1400d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang   }
14024fe895cdSHong Zhang   PetscFunctionReturn(0);
14034fe895cdSHong Zhang }
14044fe895cdSHong Zhang 
1405a5e6ed63SBarry Smith #undef __FUNCT__
1406a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14071302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1408a5e6ed63SBarry Smith {
14096849ba73SBarry Smith   PetscErrorCode ierr;
14101302d50aSBarry Smith   PetscInt       i;
1411a5e6ed63SBarry Smith   PetscTruth     flg;
1412a5e6ed63SBarry Smith 
14136849ba73SBarry Smith   PetscFunctionBegin;
1414a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1415a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1416a5e6ed63SBarry Smith     if (!flg) {
14171302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1418a5e6ed63SBarry Smith     }
1419a5e6ed63SBarry Smith   }
1420a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1421a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1422a5e6ed63SBarry Smith }
1423a5e6ed63SBarry Smith 
1424a5e6ed63SBarry Smith 
1425a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1426a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1427a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1428a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1429a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1430a9d4b620SHong Zhang        MatMult_MPISBAIJ,
143197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1432431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1433431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1434a30f8f8cSSatish Balay        0,
1435a30f8f8cSSatish Balay        0,
1436a30f8f8cSSatish Balay        0,
143797304618SKris Buschelman /*10*/ 0,
1438a30f8f8cSSatish Balay        0,
1439a30f8f8cSSatish Balay        0,
144041f059aeSBarry Smith        MatSOR_MPISBAIJ,
1441a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
144297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1443a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1446a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
144797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1449a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1450a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1451d519adbfSMatthew Knepley /*24*/ 0,
1452a30f8f8cSSatish Balay        0,
1453a30f8f8cSSatish Balay        0,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
1456d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1457b5df2d14SHong Zhang        0,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
1460a30f8f8cSSatish Balay        0,
1461d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1462a30f8f8cSSatish Balay        0,
1463a30f8f8cSSatish Balay        0,
1464a30f8f8cSSatish Balay        0,
1465a30f8f8cSSatish Balay        0,
1466d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1467a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1468d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14703c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1471d519adbfSMatthew Knepley /*44*/ 0,
1472a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1473a30f8f8cSSatish Balay        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476d519adbfSMatthew Knepley /*49*/ 0,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481d519adbfSMatthew Knepley /*54*/ 0,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1484a30f8f8cSSatish Balay        0,
1485a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1486d519adbfSMatthew Knepley /*59*/ 0,
1487a30f8f8cSSatish Balay        0,
1488a30f8f8cSSatish Balay        0,
1489357abbc8SBarry Smith        0,
149024d5174aSHong Zhang        0,
1491d519adbfSMatthew Knepley /*64*/ 0,
149224d5174aSHong Zhang        0,
149324d5174aSHong Zhang        0,
149424d5174aSHong Zhang        0,
149524d5174aSHong Zhang        0,
1496d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
149724d5174aSHong Zhang        0,
149897304618SKris Buschelman        0,
149997304618SKris Buschelman        0,
150097304618SKris Buschelman        0,
1501d519adbfSMatthew Knepley /*74*/ 0,
150297304618SKris Buschelman        0,
150397304618SKris Buschelman        0,
150497304618SKris Buschelman        0,
150597304618SKris Buschelman        0,
1506d519adbfSMatthew Knepley /*79*/ 0,
150797304618SKris Buschelman        0,
150897304618SKris Buschelman        0,
150997304618SKris Buschelman        0,
1510865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1511d519adbfSMatthew Knepley /*84*/ 0,
1512865e5f61SKris Buschelman        0,
1513865e5f61SKris Buschelman        0,
1514865e5f61SKris Buschelman        0,
1515865e5f61SKris Buschelman        0,
1516d519adbfSMatthew Knepley /*89*/ 0,
1517865e5f61SKris Buschelman        0,
1518865e5f61SKris Buschelman        0,
1519865e5f61SKris Buschelman        0,
1520865e5f61SKris Buschelman        0,
1521d519adbfSMatthew Knepley /*94*/ 0,
1522865e5f61SKris Buschelman        0,
1523865e5f61SKris Buschelman        0,
152499cafbc1SBarry Smith        0,
152599cafbc1SBarry Smith        0,
1526d519adbfSMatthew Knepley /*99*/ 0,
152799cafbc1SBarry Smith        0,
152899cafbc1SBarry Smith        0,
152999cafbc1SBarry Smith        0,
153099cafbc1SBarry Smith        0,
1531d519adbfSMatthew Knepley /*104*/0,
153299cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1533d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1534d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1535d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
153699cafbc1SBarry Smith };
1537a30f8f8cSSatish Balay 
1538a30f8f8cSSatish Balay 
1539a30f8f8cSSatish Balay EXTERN_C_BEGIN
15404a2ae208SSatish Balay #undef __FUNCT__
15414a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1542be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1543a30f8f8cSSatish Balay {
1544a30f8f8cSSatish Balay   PetscFunctionBegin;
1545a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1546a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1547a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1548a30f8f8cSSatish Balay }
1549a30f8f8cSSatish Balay EXTERN_C_END
1550a30f8f8cSSatish Balay 
1551273d9f13SBarry Smith EXTERN_C_BEGIN
15524a2ae208SSatish Balay #undef __FUNCT__
1553a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1554be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1555a23d5eceSKris Buschelman {
1556a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1557dfbe8321SBarry Smith   PetscErrorCode ierr;
1558db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1559a23d5eceSKris Buschelman 
1560a23d5eceSKris Buschelman   PetscFunctionBegin;
1561db4efbfdSBarry Smith   if (bs < 0){
15627adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1563db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15648c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1565db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1566db4efbfdSBarry Smith   }
1567db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1568db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1569db4efbfdSBarry Smith   }
1570db4efbfdSBarry Smith   bs = newbs;
1571a23d5eceSKris Buschelman 
1572a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1573a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
157477431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
157577431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1576899cda47SBarry Smith 
1577d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
157826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
157926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1580899cda47SBarry Smith 
1581a23d5eceSKris Buschelman   if (d_nnz) {
1582d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
158377431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1584a23d5eceSKris Buschelman     }
1585a23d5eceSKris Buschelman   }
1586a23d5eceSKris Buschelman   if (o_nnz) {
1587d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
158877431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1589a23d5eceSKris Buschelman     }
1590a23d5eceSKris Buschelman   }
1591a23d5eceSKris Buschelman 
1592a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1593d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1594d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1595d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1596d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1597a23d5eceSKris Buschelman   }
1598a23d5eceSKris Buschelman 
1599d0f46423SBarry Smith   B->rmap->bs  = bs;
1600a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1601a23d5eceSKris Buschelman   b->mbs = mbs;
1602a23d5eceSKris Buschelman   b->nbs = mbs;
1603a23d5eceSKris Buschelman   b->Mbs = Mbs;
1604a23d5eceSKris Buschelman   b->Nbs = Mbs;
1605a23d5eceSKris Buschelman 
1606a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1607d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1608a23d5eceSKris Buschelman   }
1609d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1610d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1611a23d5eceSKris Buschelman 
1612d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1613d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1614a23d5eceSKris Buschelman 
1615526dfc15SBarry Smith   if (!B->preallocated) {
1616f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1617d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16189c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
161952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1620f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1621d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16224aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
162352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1624a23d5eceSKris Buschelman     /* build cache for off array entries formed */
16257adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1626526dfc15SBarry Smith   }
1627a23d5eceSKris Buschelman 
1628526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1629526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1630526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1631a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1632a23d5eceSKris Buschelman }
1633a23d5eceSKris Buschelman EXTERN_C_END
1634a23d5eceSKris Buschelman 
16355c9eb25fSBarry Smith EXTERN_C_BEGIN
1636611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1637611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1638611f576cSBarry Smith #endif
1639611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16405c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1641611f576cSBarry Smith #endif
1642b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1643b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1644b5e56a35SBarry Smith #endif
16455c9eb25fSBarry Smith EXTERN_C_END
16465c9eb25fSBarry Smith 
16470bad9183SKris Buschelman /*MC
1648fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16490bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16500bad9183SKris Buschelman 
16510bad9183SKris Buschelman    Options Database Keys:
16520bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16530bad9183SKris Buschelman 
16540bad9183SKris Buschelman   Level: beginner
16550bad9183SKris Buschelman 
16560bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16570bad9183SKris Buschelman M*/
16580bad9183SKris Buschelman 
1659a23d5eceSKris Buschelman EXTERN_C_BEGIN
1660a23d5eceSKris Buschelman #undef __FUNCT__
16614a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1662be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1663b5df2d14SHong Zhang {
1664b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1665dfbe8321SBarry Smith   PetscErrorCode ierr;
1666b5df2d14SHong Zhang   PetscTruth     flg;
1667b5df2d14SHong Zhang 
1668b5df2d14SHong Zhang   PetscFunctionBegin;
1669b5df2d14SHong Zhang 
167038f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1671b0a32e0cSBarry Smith   B->data = (void*)b;
1672b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1673b5df2d14SHong Zhang 
1674b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1675b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1676b5df2d14SHong Zhang   B->mapping         = 0;
1677b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1678b5df2d14SHong Zhang 
1679b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16807adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16817adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1682b5df2d14SHong Zhang 
1683b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1684899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1685b5df2d14SHong Zhang 
1686b5df2d14SHong Zhang   /* build cache for off array entries formed */
16877adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1688b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1689b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1690b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1691b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1692b5df2d14SHong Zhang 
1693b5df2d14SHong Zhang   /* stuff used in block assembly */
1694b5df2d14SHong Zhang   b->barray       = 0;
1695b5df2d14SHong Zhang 
1696b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1697b5df2d14SHong Zhang   b->lvec         = 0;
1698b5df2d14SHong Zhang   b->Mvctx        = 0;
169940781036SHong Zhang   b->slvec0       = 0;
170040781036SHong Zhang   b->slvec0b      = 0;
170140781036SHong Zhang   b->slvec1       = 0;
170240781036SHong Zhang   b->slvec1a      = 0;
170340781036SHong Zhang   b->slvec1b      = 0;
170440781036SHong Zhang   b->sMvctx       = 0;
1705b5df2d14SHong Zhang 
1706b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1707b5df2d14SHong Zhang   b->rowindices   = 0;
1708b5df2d14SHong Zhang   b->rowvalues    = 0;
1709b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* hash table stuff */
1712b5df2d14SHong Zhang   b->ht           = 0;
1713b5df2d14SHong Zhang   b->hd           = 0;
1714b5df2d14SHong Zhang   b->ht_size      = 0;
1715b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1716b5df2d14SHong Zhang   b->ht_fact      = 0;
1717b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1718b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1719b5df2d14SHong Zhang 
172059ffdab8SBarry Smith   b->in_loc       = 0;
172159ffdab8SBarry Smith   b->v_loc        = 0;
172259ffdab8SBarry Smith   b->n_loc        = 0;
17237adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17248c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1725b5df2d14SHong Zhang     if (flg) {
1726f6275e2eSBarry Smith       PetscReal fact = 1.39;
17274e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17288c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1729b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1730b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17311e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1732b5df2d14SHong Zhang     }
17338c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17348c07d4e3SBarry Smith 
1735b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1736ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1737b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1738b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1739b5e56a35SBarry Smith #endif
1740611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1741ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17425c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17435c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1744611f576cSBarry Smith #endif
1745611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1746ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17475c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17485c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1749611f576cSBarry Smith #endif
1750b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1751b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1752b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1753b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1754b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1755b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1756b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1757b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1758b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1759a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1760a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1761a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
176223ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
176323ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
176423ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
176523ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
176617667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1767b5df2d14SHong Zhang   PetscFunctionReturn(0);
1768b5df2d14SHong Zhang }
1769273d9f13SBarry Smith EXTERN_C_END
1770b5df2d14SHong Zhang 
1771209238afSKris Buschelman /*MC
1772002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1773209238afSKris Buschelman 
1774209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1775209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1776209238afSKris Buschelman 
1777209238afSKris Buschelman    Options Database Keys:
1778209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1779209238afSKris Buschelman 
1780209238afSKris Buschelman   Level: beginner
1781209238afSKris Buschelman 
1782209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1783209238afSKris Buschelman M*/
1784209238afSKris Buschelman 
1785209238afSKris Buschelman EXTERN_C_BEGIN
1786209238afSKris Buschelman #undef __FUNCT__
1787209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1788be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1789dfbe8321SBarry Smith {
17906849ba73SBarry Smith   PetscErrorCode ierr;
17911302d50aSBarry Smith   PetscMPIInt    size;
1792209238afSKris Buschelman 
1793209238afSKris Buschelman   PetscFunctionBegin;
17947adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1795209238afSKris Buschelman   if (size == 1) {
1796209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1797209238afSKris Buschelman   } else {
1798209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1799209238afSKris Buschelman   }
1800209238afSKris Buschelman   PetscFunctionReturn(0);
1801209238afSKris Buschelman }
1802209238afSKris Buschelman EXTERN_C_END
1803209238afSKris Buschelman 
18044a2ae208SSatish Balay #undef __FUNCT__
18054a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1806b5df2d14SHong Zhang /*@C
1807b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1808b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1809b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1810b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1811b5df2d14SHong Zhang 
1812b5df2d14SHong Zhang    Collective on Mat
1813b5df2d14SHong Zhang 
1814b5df2d14SHong Zhang    Input Parameters:
1815b5df2d14SHong Zhang +  A - the matrix
1816b5df2d14SHong Zhang .  bs   - size of blockk
1817b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1818b5df2d14SHong Zhang            submatrix  (same for all local rows)
1819b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18206d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18216d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18226d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1823b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1824b5df2d14SHong Zhang            submatrix (same for all local rows).
1825b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1826b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1827b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1828b5df2d14SHong Zhang 
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Options Database Keys:
1831b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1832b5df2d14SHong Zhang                      block calculations (much slower)
1833b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1834b5df2d14SHong Zhang 
1835b5df2d14SHong Zhang    Notes:
1836b5df2d14SHong Zhang 
1837b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1838b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1839b5df2d14SHong Zhang 
184049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
184149a6f317SBarry Smith 
1842b5df2d14SHong Zhang    Storage Information:
1843b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1844b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1845b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1846b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1849b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1850b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1851b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1852b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1853b5df2d14SHong Zhang 
1854aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1855aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1856aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1857aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1858aa95bbe8SBarry Smith 
1859b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1860b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1861b5df2d14SHong Zhang 
1862b5df2d14SHong Zhang .vb
1863b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1864b5df2d14SHong Zhang           -------------------
1865b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1866b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1867b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1868b5df2d14SHong Zhang           -------------------
1869b5df2d14SHong Zhang .ve
1870b5df2d14SHong Zhang 
1871b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1872b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18736d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18746d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1875b5df2d14SHong Zhang 
18766d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18776d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1878b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1879b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1880b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1881b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1882b5df2d14SHong Zhang    matrices.
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    Level: intermediate
1885b5df2d14SHong Zhang 
1886b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1889b5df2d14SHong Zhang @*/
1890be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1891b5df2d14SHong Zhang {
18921302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1893b5df2d14SHong Zhang 
1894b5df2d14SHong Zhang   PetscFunctionBegin;
1895a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1896a23d5eceSKris Buschelman   if (f) {
1897a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1898b5df2d14SHong Zhang   }
1899b5df2d14SHong Zhang   PetscFunctionReturn(0);
1900b5df2d14SHong Zhang }
1901b5df2d14SHong Zhang 
19024a2ae208SSatish Balay #undef __FUNCT__
19034a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1904a30f8f8cSSatish Balay /*@C
1905a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1906a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1907a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1908a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1909a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1910a30f8f8cSSatish Balay 
1911a30f8f8cSSatish Balay    Collective on MPI_Comm
1912a30f8f8cSSatish Balay 
1913a30f8f8cSSatish Balay    Input Parameters:
1914a30f8f8cSSatish Balay +  comm - MPI communicator
1915a30f8f8cSSatish Balay .  bs   - size of blockk
1916a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1917a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1918a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1919a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1920a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1921a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1922a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1923a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1924a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1925a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1926a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19276d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19286d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19296d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1930a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1931a30f8f8cSSatish Balay            submatrix (same for all local rows).
1932a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1933a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1934a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1935a30f8f8cSSatish Balay 
1936a30f8f8cSSatish Balay    Output Parameter:
1937a30f8f8cSSatish Balay .  A - the matrix
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay    Options Database Keys:
1940a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1941a30f8f8cSSatish Balay                      block calculations (much slower)
1942a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1943a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1944a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1945a30f8f8cSSatish Balay 
1946175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1947ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1948175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1949175b88e8SBarry Smith 
1950a30f8f8cSSatish Balay    Notes:
1951d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19526d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1953d1be2dadSMatthew Knepley 
1954a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1955a30f8f8cSSatish Balay    (possibly both).
1956a30f8f8cSSatish Balay 
1957a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1958a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1959a30f8f8cSSatish Balay 
196049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
196149a6f317SBarry Smith 
1962a30f8f8cSSatish Balay    Storage Information:
1963a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1964a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1965a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1966a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1967a30f8f8cSSatish Balay 
1968a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1969a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1970a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1971a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1972a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1973a30f8f8cSSatish Balay 
1974a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1975a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay .vb
1978a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1979a30f8f8cSSatish Balay           -------------------
1980a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1981a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1982a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1983a30f8f8cSSatish Balay           -------------------
1984a30f8f8cSSatish Balay .ve
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1987a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19886d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19896d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1990a30f8f8cSSatish Balay 
19916d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19926d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1993a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1994a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1995a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1996a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1997a30f8f8cSSatish Balay    matrices.
1998a30f8f8cSSatish Balay 
1999a30f8f8cSSatish Balay    Level: intermediate
2000a30f8f8cSSatish Balay 
2001a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2002a30f8f8cSSatish Balay 
2003a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2004a30f8f8cSSatish Balay @*/
2005a30f8f8cSSatish Balay 
2006be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2007a30f8f8cSSatish Balay {
20086849ba73SBarry Smith   PetscErrorCode ierr;
20091302d50aSBarry Smith   PetscMPIInt    size;
2010a30f8f8cSSatish Balay 
2011a30f8f8cSSatish Balay   PetscFunctionBegin;
2012f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2013f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2014273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2015273d9f13SBarry Smith   if (size > 1) {
2016b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2017b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2018273d9f13SBarry Smith   } else {
2019273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2020273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2021273d9f13SBarry Smith   }
2022a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2023a30f8f8cSSatish Balay }
2024a30f8f8cSSatish Balay 
2025a30f8f8cSSatish Balay 
20264a2ae208SSatish Balay #undef __FUNCT__
20274a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20286849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2029a30f8f8cSSatish Balay {
2030a30f8f8cSSatish Balay   Mat            mat;
2031a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2032dfbe8321SBarry Smith   PetscErrorCode ierr;
2033d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2034387bc808SHong Zhang   PetscScalar    *array;
2035a30f8f8cSSatish Balay 
2036a30f8f8cSSatish Balay   PetscFunctionBegin;
2037a30f8f8cSSatish Balay   *newmat       = 0;
20387adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2039d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20407adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20411d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
204226283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
204326283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2044e1b6402fSHong Zhang 
204582327fa8SHong Zhang   mat->factor       = matin->factor;
2046273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
204782327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20487fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20497fff6886SHong Zhang 
2050b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2051a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2052a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2053a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2054a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2055a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2056a30f8f8cSSatish Balay 
2057899cda47SBarry Smith 
2058a30f8f8cSSatish Balay   a->size         = oldmat->size;
2059a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2060a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2061a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2062a30f8f8cSSatish Balay   a->rowindices   = 0;
2063a30f8f8cSSatish Balay   a->rowvalues    = 0;
2064a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2065a30f8f8cSSatish Balay   a->barray       = 0;
2066899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2067899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2068899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2069899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2070a30f8f8cSSatish Balay 
2071a30f8f8cSSatish Balay   /* hash table stuff */
2072a30f8f8cSSatish Balay   a->ht           = 0;
2073a30f8f8cSSatish Balay   a->hd           = 0;
2074a30f8f8cSSatish Balay   a->ht_size      = 0;
2075a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2076a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2077a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2078a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2079a30f8f8cSSatish Balay 
2080899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
20817adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
2082d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2083a30f8f8cSSatish Balay   if (oldmat->colmap) {
2084a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2085a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2086a30f8f8cSSatish Balay #else
20871302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
208852e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20891302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2090a30f8f8cSSatish Balay #endif
2091a30f8f8cSSatish Balay   } else a->colmap = 0;
2092387bc808SHong Zhang 
2093a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20941302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
209552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20961302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2097a30f8f8cSSatish Balay   } else a->garray = 0;
2098a30f8f8cSSatish Balay 
2099a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
210052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
210252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
210382327fa8SHong Zhang 
210482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
210552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
210682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
210752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2108387bc808SHong Zhang 
2109387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21101ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2111387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2112387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21131ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21141ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2115387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21161ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
211752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
211952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2122387bc808SHong Zhang 
2123387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2124387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2125387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
212782327fa8SHong Zhang 
2128a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
212952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2130a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
213152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21327adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2133a30f8f8cSSatish Balay   *newmat = mat;
2134a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2135a30f8f8cSSatish Balay }
2136a30f8f8cSSatish Balay 
2137a30f8f8cSSatish Balay #include "petscsys.h"
2138a30f8f8cSSatish Balay 
21394a2ae208SSatish Balay #undef __FUNCT__
21404a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2141a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2142a30f8f8cSSatish Balay {
2143a30f8f8cSSatish Balay   Mat            A;
21446849ba73SBarry Smith   PetscErrorCode ierr;
214513f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
214687828ca2SBarry Smith   PetscScalar    *vals,*buf;
2147a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2148a30f8f8cSSatish Balay   MPI_Status     status;
2149e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
215013f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21512fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21521302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21531302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21541302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
215513f74950SBarry Smith   int            fd;
2156a30f8f8cSSatish Balay 
2157a30f8f8cSSatish Balay   PetscFunctionBegin;
215877925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21598c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21608c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2161a30f8f8cSSatish Balay 
2162a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2163a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay   if (!rank) {
2165b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2166a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2167552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2168a30f8f8cSSatish Balay     if (header[3] < 0) {
216929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2170a30f8f8cSSatish Balay     }
2171a30f8f8cSSatish Balay   }
2172a30f8f8cSSatish Balay 
2173a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2174a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2175a30f8f8cSSatish Balay 
217629bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2177a30f8f8cSSatish Balay 
2178a30f8f8cSSatish Balay   /*
2179a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2180a30f8f8cSSatish Balay      divisible by the blocksize
2181a30f8f8cSSatish Balay   */
2182a30f8f8cSSatish Balay   Mbs        = M/bs;
2183a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2184a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2185a30f8f8cSSatish Balay   else                  Mbs++;
2186a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21871e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2188a30f8f8cSSatish Balay   }
2189a30f8f8cSSatish Balay 
2190a30f8f8cSSatish Balay   /* determine ownership of all rows */
2191a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2192a30f8f8cSSatish Balay   m          = mbs*bs;
2193a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2195e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2196e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2197a30f8f8cSSatish Balay   rowners[0] = 0;
2198a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2199a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2200a30f8f8cSSatish Balay   rstart = rowners[rank];
2201a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2202a30f8f8cSSatish Balay 
2203a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22042fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay   if (!rank) {
22061302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2209a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2211a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay   } else {
2214a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay   }
2216a30f8f8cSSatish Balay 
22170222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2218a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22191302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22201302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2221a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2222a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2223a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2224a30f8f8cSSatish Balay       }
2225a30f8f8cSSatish Balay     }
2226a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay 
2228a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2229a30f8f8cSSatish Balay     maxnz = 0;
2230a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2231a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2232a30f8f8cSSatish Balay     }
22331302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2234a30f8f8cSSatish Balay 
2235a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2236a30f8f8cSSatish Balay     nz     = procsnz[0];
22371302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2238a30f8f8cSSatish Balay     mycols = ibuf;
2239a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2240a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2242a30f8f8cSSatish Balay 
2243a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2244a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2245a30f8f8cSSatish Balay       nz   = procsnz[i];
2246a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2247a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2248a30f8f8cSSatish Balay     }
2249a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2250a30f8f8cSSatish Balay     if (size != 1) {
2251a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2252a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2253a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2254a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay     }
2256a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22570222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2258a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2259a30f8f8cSSatish Balay     nz = 0;
2260a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2261a30f8f8cSSatish Balay       nz += locrowlens[i];
2262a30f8f8cSSatish Balay     }
22631302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2264a30f8f8cSSatish Balay     mycols = ibuf;
2265a30f8f8cSSatish Balay     /* receive message of column indices*/
2266a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2267a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
226829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2269a30f8f8cSSatish Balay   }
2270a30f8f8cSSatish Balay 
2271a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22721302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2273a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22741302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22751302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2276a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2277a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2278a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2279a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2280a30f8f8cSSatish Balay     dcount  = 0;
2281a30f8f8cSSatish Balay     odcount = 0;
2282a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2283a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2284a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22850222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2286a30f8f8cSSatish Balay         if (!mask[tmp]) {
2287a30f8f8cSSatish Balay           mask[tmp] = 1;
22880222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22890222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2290a30f8f8cSSatish Balay         }
2291a30f8f8cSSatish Balay       }
2292a30f8f8cSSatish Balay       rowcount++;
2293a30f8f8cSSatish Balay     }
2294a30f8f8cSSatish Balay 
22950222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22960222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2297a30f8f8cSSatish Balay 
2298a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2299a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2300a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2301a30f8f8cSSatish Balay   }
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay   /* create our matrix */
2304f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2305f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
230622191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
230717fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
230822191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2309a30f8f8cSSatish Balay 
2310a30f8f8cSSatish Balay   if (!rank) {
231187828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2312a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2313a30f8f8cSSatish Balay     nz = procsnz[0];
2314a30f8f8cSSatish Balay     vals = buf;
2315a30f8f8cSSatish Balay     mycols = ibuf;
2316a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2317a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2318a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay     /* insert into matrix */
2321a30f8f8cSSatish Balay     jj      = rstart*bs;
2322a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23237e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2324a30f8f8cSSatish Balay       mycols += locrowlens[i];
2325a30f8f8cSSatish Balay       vals   += locrowlens[i];
2326a30f8f8cSSatish Balay       jj++;
2327a30f8f8cSSatish Balay     }
23287e06b45fSHong Zhang 
2329a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2330a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2331a30f8f8cSSatish Balay       nz   = procsnz[i];
2332a30f8f8cSSatish Balay       vals = buf;
2333a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23347adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay     }
2336a30f8f8cSSatish Balay     /* the last proc */
2337a30f8f8cSSatish Balay     if (size != 1){
2338a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2339a30f8f8cSSatish Balay       vals = buf;
2340a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23427adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2343a30f8f8cSSatish Balay     }
2344a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23457e06b45fSHong Zhang 
2346a30f8f8cSSatish Balay   } else {
2347a30f8f8cSSatish Balay     /* receive numeric values */
234887828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2349a30f8f8cSSatish Balay 
2350a30f8f8cSSatish Balay     /* receive message of values*/
2351a30f8f8cSSatish Balay     vals   = buf;
2352a30f8f8cSSatish Balay     mycols = ibuf;
23537adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2354a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
235529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2356a30f8f8cSSatish Balay 
2357a30f8f8cSSatish Balay     /* insert into matrix */
2358a30f8f8cSSatish Balay     jj      = rstart*bs;
2359a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2360a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2361a30f8f8cSSatish Balay       mycols += locrowlens[i];
2362a30f8f8cSSatish Balay       vals   += locrowlens[i];
2363a30f8f8cSSatish Balay       jj++;
2364a30f8f8cSSatish Balay     }
2365a30f8f8cSSatish Balay   }
23667e06b45fSHong Zhang 
2367a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2368a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2369a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2370a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2372a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2373a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2374a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
237522191285SKris Buschelman   *newmat = A;
2376a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2377a30f8f8cSSatish Balay }
2378a30f8f8cSSatish Balay 
23794a2ae208SSatish Balay #undef __FUNCT__
23804a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2381dcf5cc72SBarry Smith /*XXXXX@
2382a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2383a30f8f8cSSatish Balay 
2384a30f8f8cSSatish Balay    Input Parameters:
2385a30f8f8cSSatish Balay .  mat  - the matrix
2386a30f8f8cSSatish Balay .  fact - factor
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay    Collective on Mat
2389a30f8f8cSSatish Balay 
2390a30f8f8cSSatish Balay    Level: advanced
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay   Notes:
2393a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2394a30f8f8cSSatish Balay 
2395a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay .seealso: MatSetOption()
2398dcf5cc72SBarry Smith @XXXXX*/
2399dcf5cc72SBarry Smith 
240024d5174aSHong Zhang 
24014a2ae208SSatish Balay #undef __FUNCT__
2402985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2403985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
240424d5174aSHong Zhang {
240524d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2406f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2407ca54ac64SHong Zhang   PetscReal      atmp;
240887828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2409dfbe8321SBarry Smith   PetscErrorCode ierr;
24101302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24111302d50aSBarry Smith   PetscMPIInt    rank,size;
24121302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
241387828ca2SBarry Smith   PetscScalar    *va;
24148a1c53f2SBarry Smith   MatScalar      *ba;
2415f4c0e9e4SHong Zhang   MPI_Status     stat;
241624d5174aSHong Zhang 
241724d5174aSHong Zhang   PetscFunctionBegin;
2418985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2419985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24201ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2421f4c0e9e4SHong Zhang 
24227adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24237adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2424f4c0e9e4SHong Zhang 
2425d0f46423SBarry Smith   bs   = A->rmap->bs;
2426f4c0e9e4SHong Zhang   mbs  = a->mbs;
2427f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2428f4c0e9e4SHong Zhang   ba   = b->a;
2429f4c0e9e4SHong Zhang   bi   = b->i;
2430f4c0e9e4SHong Zhang   bj   = b->j;
2431f4c0e9e4SHong Zhang 
2432f4c0e9e4SHong Zhang   /* find ownerships */
2433d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2434f4c0e9e4SHong Zhang 
2435f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
243682502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2437ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2438f4c0e9e4SHong Zhang 
2439f4c0e9e4SHong Zhang   /* row_max for B */
2440b8475685SHong Zhang   if (rank != size-1){
2441f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2442f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2443f4c0e9e4SHong Zhang       brow  = bs*i;
2444f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2445f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2446f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2447ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
244804d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2449f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2450f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2451ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2452ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2453f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2454f4c0e9e4SHong Zhang           }
2455f4c0e9e4SHong Zhang         }
2456f4c0e9e4SHong Zhang         bj++;
2457f4c0e9e4SHong Zhang       }
2458f4c0e9e4SHong Zhang     }
2459f4c0e9e4SHong Zhang 
2460f4c0e9e4SHong Zhang     /* send values to its owners */
2461f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2462f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2463ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24647adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2465ca54ac64SHong Zhang     }
2466f4c0e9e4SHong Zhang   }
2467f4c0e9e4SHong Zhang 
2468f4c0e9e4SHong Zhang   /* receive values */
2469ca54ac64SHong Zhang   if (rank){
2470f4c0e9e4SHong Zhang     rvalues = work;
2471ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2472f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24737adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2474f4c0e9e4SHong Zhang       /* process values */
2475f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2476ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2477f4c0e9e4SHong Zhang       }
2478f4c0e9e4SHong Zhang     }
2479ca54ac64SHong Zhang   }
2480f4c0e9e4SHong Zhang 
24811ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2482ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
248324d5174aSHong Zhang   PetscFunctionReturn(0);
248424d5174aSHong Zhang }
24852798e883SHong Zhang 
24862798e883SHong Zhang #undef __FUNCT__
248741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
248841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24892798e883SHong Zhang {
24902798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2491dfbe8321SBarry Smith   PetscErrorCode ierr;
2492d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2493fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2494ffe4fb16SHong Zhang   Vec            bb1;
2495ffe4fb16SHong Zhang 
2496ffe4fb16SHong Zhang   PetscFunctionBegin;
249777431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2498b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2499ffe4fb16SHong Zhang 
2500a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
250141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2502a2b30743SBarry Smith     PetscFunctionReturn(0);
2503a2b30743SBarry Smith   }
2504a2b30743SBarry Smith 
2505ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2506ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
250741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2508ffe4fb16SHong Zhang       its--;
2509ffe4fb16SHong Zhang     }
2510ffe4fb16SHong Zhang 
2511ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2512ffe4fb16SHong Zhang     while (its--){
2513ffe4fb16SHong Zhang 
2514ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2515ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2516ffe4fb16SHong Zhang 
2517ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25181ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25191ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2520ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25211ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2522ffe4fb16SHong Zhang 
2523efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2524ffe4fb16SHong Zhang 
2525ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25261ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25271ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2528ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25291ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang 
2531ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2532fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang 
2534ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25351ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25361ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2537ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2538ffe4fb16SHong Zhang 
2539ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2540ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2541ffe4fb16SHong Zhang 
2542ffe4fb16SHong Zhang       /* local diagonal sweep */
254341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2544ffe4fb16SHong Zhang     }
2545ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2546fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
254741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2548fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
254941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2550fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2551fa22f6d0SBarry Smith     Vec               xx1;
2552fa22f6d0SBarry Smith     PetscTruth        hasop;
255320f1ed55SBarry Smith     const PetscScalar *diag;
2554887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
255520f1ed55SBarry Smith     PetscInt          i,n;
2556fa22f6d0SBarry Smith 
2557fa22f6d0SBarry Smith     if (!mat->xx1) {
2558fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2559fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2560fa22f6d0SBarry Smith     }
2561fa22f6d0SBarry Smith     xx1 = mat->xx1;
2562fa22f6d0SBarry Smith     bb1 = mat->bb1;
2563fa22f6d0SBarry Smith 
256441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2565fa22f6d0SBarry Smith 
2566fa22f6d0SBarry Smith     if (!mat->diag) {
2567effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2568fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2569fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2570fa22f6d0SBarry Smith     }
2571fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2572fa22f6d0SBarry Smith 
2573fa22f6d0SBarry Smith     if (hasop) {
2574fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2575887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
257620f1ed55SBarry Smith     } else {
257720f1ed55SBarry Smith       /*
257820f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
257920f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2580887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
258120f1ed55SBarry Smith       */
258220f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
258320f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
258420f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
258520f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
258620f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2587887ee2caSBarry Smith       if (omega == 1.0) {
258820f1ed55SBarry Smith 	for (i=0; i<n; i++) {
258920f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
259020f1ed55SBarry Smith 	}
259120f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2592887ee2caSBarry Smith       } else {
2593887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2594887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2595887ee2caSBarry Smith 	}
2596887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2597887ee2caSBarry Smith       }
259820f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
259920f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
260020f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
260120f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
260220f1ed55SBarry Smith     }
2603fa22f6d0SBarry Smith 
2604fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2605fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2606fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2607fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2608fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2609fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2610fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2611fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2612fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2613fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2614effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2615fa22f6d0SBarry Smith 
2616fa22f6d0SBarry Smith     /* local sweep */
261741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2618fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2619ffe4fb16SHong Zhang   } else {
2620ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2621ffe4fb16SHong Zhang   }
2622ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2623ffe4fb16SHong Zhang }
2624ffe4fb16SHong Zhang 
2625ffe4fb16SHong Zhang #undef __FUNCT__
262641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
262741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2628ffe4fb16SHong Zhang {
2629ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2630dfbe8321SBarry Smith   PetscErrorCode ierr;
26312798e883SHong Zhang   Vec            lvec1,bb1;
26322798e883SHong Zhang 
26332798e883SHong Zhang   PetscFunctionBegin;
263477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2635b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26362798e883SHong Zhang 
2637c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26382798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
263941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26402798e883SHong Zhang       its--;
26412798e883SHong Zhang     }
26422798e883SHong Zhang 
26432798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26442798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26452798e883SHong Zhang     while (its--){
2646ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26472798e883SHong Zhang 
26482798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26492798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2650efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26512798e883SHong Zhang 
2652ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26532798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2654ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26552798e883SHong Zhang 
26562798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2657efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26582798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26592798e883SHong Zhang 
2660ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26612798e883SHong Zhang 
2662c14dc6b6SHong Zhang       /* diagonal sweep */
266341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26642798e883SHong Zhang     }
26652798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26662798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2667c14dc6b6SHong Zhang   } else {
2668c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2669c14dc6b6SHong Zhang   }
26702798e883SHong Zhang   PetscFunctionReturn(0);
26712798e883SHong Zhang }
26722798e883SHong Zhang 
2673