1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define CHUNKSIZE 10 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 57a30f8f8cSSatish Balay { \ 58a30f8f8cSSatish Balay \ 59a30f8f8cSSatish Balay brow = row/bs; \ 60a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 61a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 62a30f8f8cSSatish Balay bcol = col/bs; \ 63a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 64a30f8f8cSSatish Balay low = 0; high = nrow; \ 65a30f8f8cSSatish Balay while (high-low > 3) { \ 66a30f8f8cSSatish Balay t = (low+high)/2; \ 67a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 68a30f8f8cSSatish Balay else low = t; \ 69a30f8f8cSSatish Balay } \ 70a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 71a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 72a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 73a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 74a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 75a30f8f8cSSatish Balay else *bap = value; \ 76a30f8f8cSSatish Balay goto a_noinsert; \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 80085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 81421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 82a30f8f8cSSatish Balay N = nrow++ - 1; \ 83a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 84a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 85a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 86a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 87a30f8f8cSSatish Balay } \ 88a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 89a30f8f8cSSatish Balay rp[_i] = bcol; \ 90a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 91a30f8f8cSSatish Balay a_noinsert:; \ 92a30f8f8cSSatish Balay ailen[brow] = nrow; \ 93a30f8f8cSSatish Balay } 94e5e170daSBarry Smith 95a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 96a30f8f8cSSatish Balay { \ 97a30f8f8cSSatish Balay brow = row/bs; \ 98a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 99a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 100a30f8f8cSSatish Balay bcol = col/bs; \ 101a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 102a30f8f8cSSatish Balay low = 0; high = nrow; \ 103a30f8f8cSSatish Balay while (high-low > 3) { \ 104a30f8f8cSSatish Balay t = (low+high)/2; \ 105a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 106a30f8f8cSSatish Balay else low = t; \ 107a30f8f8cSSatish Balay } \ 108a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 109a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 110a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 111a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 112a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 113a30f8f8cSSatish Balay else *bap = value; \ 114a30f8f8cSSatish Balay goto b_noinsert; \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 118085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 119421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 120a30f8f8cSSatish Balay N = nrow++ - 1; \ 121a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 122a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 123a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay } \ 126a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 127a30f8f8cSSatish Balay rp[_i] = bcol; \ 128a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 129a30f8f8cSSatish Balay b_noinsert:; \ 130a30f8f8cSSatish Balay bilen[brow] = nrow; \ 131a30f8f8cSSatish Balay } 132a30f8f8cSSatish Balay 133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 134a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 135a30f8f8cSSatish Balay */ 1364a2ae208SSatish Balay #undef __FUNCT__ 137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 139a30f8f8cSSatish Balay { 140a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 141a30f8f8cSSatish Balay MatScalar value; 142b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 143dfbe8321SBarry Smith PetscErrorCode ierr; 1441302d50aSBarry Smith PetscInt i,j,row,col; 145d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 146d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 147d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 148a30f8f8cSSatish Balay 149a30f8f8cSSatish Balay /* Some Variables required in the macro */ 150a30f8f8cSSatish Balay Mat A = baij->A; 151a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1521302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 153a30f8f8cSSatish Balay MatScalar *aa=a->a; 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay Mat B = baij->B; 156a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1571302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 158a30f8f8cSSatish Balay MatScalar *ba=b->a; 159a30f8f8cSSatish Balay 1601302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1611302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 162a30f8f8cSSatish Balay MatScalar *ap,*bap; 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay /* for stash */ 165910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 166910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 167a30f8f8cSSatish Balay 168a30f8f8cSSatish Balay PetscFunctionBegin; 169a30f8f8cSSatish Balay 170a30f8f8cSSatish Balay if (!baij->donotstash){ 17159ffdab8SBarry Smith if (n > baij->n_loc) { 17259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith baij->n_loc = n; 17759ffdab8SBarry Smith } 17859ffdab8SBarry Smith in_loc = baij->in_loc; 17959ffdab8SBarry Smith v_loc = baij->v_loc; 180a30f8f8cSSatish Balay } 181a30f8f8cSSatish Balay 182a30f8f8cSSatish Balay for (i=0; i<m; i++) { 183a30f8f8cSSatish Balay if (im[i] < 0) continue; 1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 185d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 186a30f8f8cSSatish Balay #endif 187a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 188a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 189a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19001b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19101b2bd88SHong Zhang if (a->ignore_ltriangular){ 19201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19301b2bd88SHong Zhang } else { 1944e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19501b2bd88SHong Zhang } 19601b2bd88SHong Zhang } 197a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 198a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 199a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 200a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 201a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 202a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 203a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 204a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 206d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 207a30f8f8cSSatish Balay #endif 208a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 209a30f8f8cSSatish Balay if (mat->was_assembled) { 210a30f8f8cSSatish Balay if (!baij->colmap) { 211653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 214a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21571730473SSatish Balay col = col - 1; 216a30f8f8cSSatish Balay #else 21771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 218a30f8f8cSSatish Balay #endif 219a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 220a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 221a30f8f8cSSatish Balay col = in[j]; 222a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 223a30f8f8cSSatish Balay B = baij->B; 224a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 225a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 226a30f8f8cSSatish Balay ba=b->a; 22771730473SSatish Balay } else col += in[j]%bs; 228a30f8f8cSSatish Balay } else col = in[j]; 229a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 231a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } else { /* off processor entry */ 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 2610880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 28177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 2860880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2870880e062SHong Zhang if ((roworiented) && (n == 1)) { 288f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2890880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2910880e062SHong Zhang } else { /* Here a copy is required */ 2920880e062SHong Zhang if (roworiented) { 2930880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2940880e062SHong Zhang } else { 2950880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2960880e062SHong Zhang } 2970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2990880e062SHong Zhang *barray++ = *value++; 3000880e062SHong Zhang } 3010880e062SHong Zhang } 3020880e062SHong Zhang barray -=bs2; 3030880e062SHong Zhang } 3040880e062SHong Zhang 3050880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3060880e062SHong Zhang col = in[j] - cstart; 3070880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3080880e062SHong Zhang } 3090880e062SHong Zhang else if (in[j] < 0) continue; 3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 31177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3120880e062SHong Zhang #endif 3130880e062SHong Zhang else { 3140880e062SHong Zhang if (mat->was_assembled) { 3150880e062SHong Zhang if (!baij->colmap) { 316653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3170880e062SHong Zhang } 3180880e062SHong Zhang 3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3211302d50aSBarry Smith { PetscInt data; 3220880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3230880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3240880e062SHong Zhang } 3250880e062SHong Zhang #else 3260880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3300880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3310880e062SHong Zhang col = (col - 1)/bs; 3320880e062SHong Zhang #else 3330880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3340880e062SHong Zhang #endif 3350880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3360880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3370880e062SHong Zhang col = in[j]; 3380880e062SHong Zhang } 3390880e062SHong Zhang } 3400880e062SHong Zhang else col = in[j]; 341e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang } else { 3450880e062SHong Zhang if (!baij->donotstash) { 3460880e062SHong Zhang if (roworiented) { 3470880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3480880e062SHong Zhang } else { 3490880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang PetscFunctionReturn(0); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 360a30f8f8cSSatish Balay { 361f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3626849ba73SBarry Smith PetscErrorCode ierr; 363d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 364d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 365a30f8f8cSSatish Balay 366a30f8f8cSSatish Balay PetscFunctionBegin; 367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 36897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 369d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 370a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 371a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 372a30f8f8cSSatish Balay for (j=0; j<n; j++) { 37397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 374d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 375a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 376a30f8f8cSSatish Balay col = idxn[j] - bscstart; 377c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 378a30f8f8cSSatish Balay } else { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 384a30f8f8cSSatish Balay data --; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 389a30f8f8cSSatish Balay else { 390a30f8f8cSSatish Balay col = data + idxn[j]%bs; 391e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } else { 39629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay PetscFunctionReturn(0); 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay 4024a2ae208SSatish Balay #undef __FUNCT__ 4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 405a30f8f8cSSatish Balay { 406a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 407dfbe8321SBarry Smith PetscErrorCode ierr; 408a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 409a30f8f8cSSatish Balay 410a30f8f8cSSatish Balay PetscFunctionBegin; 411a30f8f8cSSatish Balay if (baij->size == 1) { 412a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 413a30f8f8cSSatish Balay } else { 414a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 415f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 418a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 419a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4207adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 422a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4230b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4240b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4250b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4260b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 427899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 428d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4290b8dc8d2SHong Zhang MatScalar *v; 4300b8dc8d2SHong Zhang 431d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 432d0f46423SBarry Smith rsum2 = rsum + mat->cmap->N; 433d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 467d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 4720b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 473a30f8f8cSSatish Balay } else { 47429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 475a30f8f8cSSatish Balay } 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay PetscFunctionReturn(0); 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay 4804a2ae208SSatish Balay #undef __FUNCT__ 4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 483a30f8f8cSSatish Balay { 484a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 485dfbe8321SBarry Smith PetscErrorCode ierr; 4861302d50aSBarry Smith PetscInt nstash,reallocs; 487a30f8f8cSSatish Balay InsertMode addv; 488a30f8f8cSSatish Balay 489a30f8f8cSSatish Balay PetscFunctionBegin; 490a30f8f8cSSatish Balay if (baij->donotstash) { 491a30f8f8cSSatish Balay PetscFunctionReturn(0); 492a30f8f8cSSatish Balay } 493a30f8f8cSSatish Balay 494a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4957adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 496a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 49729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 500a30f8f8cSSatish Balay 501d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5021e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 503a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay PetscFunctionReturn(0); 508a30f8f8cSSatish Balay } 509a30f8f8cSSatish Balay 5104a2ae208SSatish Balay #undef __FUNCT__ 5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 513a30f8f8cSSatish Balay { 514a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 515a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5166849ba73SBarry Smith PetscErrorCode ierr; 51713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 518e44c0bd4SBarry Smith PetscInt *row,*col; 519e44c0bd4SBarry Smith PetscTruth other_disassembled; 52013f74950SBarry Smith PetscMPIInt n; 521a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 522a30f8f8cSSatish Balay MatScalar *val; 523a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 524a30f8f8cSSatish Balay 52591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 526a30f8f8cSSatish Balay PetscFunctionBegin; 527a30f8f8cSSatish Balay 528a30f8f8cSSatish Balay if (!baij->donotstash) { 529a30f8f8cSSatish Balay while (1) { 530a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 531a30f8f8cSSatish Balay if (!flg) break; 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay for (i=0; i<n;) { 534a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 535a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 536a30f8f8cSSatish Balay if (j < n) ncols = j-i; 537a30f8f8cSSatish Balay else ncols = n-i; 538a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 539dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 540a30f8f8cSSatish Balay i = j; 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 544a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 545a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 546a30f8f8cSSatish Balay restore the original flags */ 547a30f8f8cSSatish Balay r1 = baij->roworiented; 548a30f8f8cSSatish Balay r2 = a->roworiented; 54991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 550a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 551a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 553a30f8f8cSSatish Balay while (1) { 554a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 555a30f8f8cSSatish Balay if (!flg) break; 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay for (i=0; i<n;) { 558a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 559a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 560a30f8f8cSSatish Balay if (j < n) ncols = j-i; 561a30f8f8cSSatish Balay else ncols = n-i; 562dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 563a30f8f8cSSatish Balay i = j; 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 573a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay 575a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 576a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 577a30f8f8cSSatish Balay /* 578a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 579a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 580a30f8f8cSSatish Balay */ 581a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5827adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 583a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 584c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay 588a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 590a30f8f8cSSatish Balay } 59191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 595a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 596a30f8f8cSSatish Balay baij->rowvalues = 0; 5975222a1afSHong Zhang 598a30f8f8cSSatish Balay PetscFunctionReturn(0); 599a30f8f8cSSatish Balay } 600a30f8f8cSSatish Balay 601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6024a2ae208SSatish Balay #undef __FUNCT__ 6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 605a30f8f8cSSatish Balay { 606a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 607dfbe8321SBarry Smith PetscErrorCode ierr; 608d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6091302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61032077d6dSBarry Smith PetscTruth iascii,isdraw; 611b0a32e0cSBarry Smith PetscViewer sviewer; 612f3ef73ceSBarry Smith PetscViewerFormat format; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay PetscFunctionBegin; 61532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 616fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 61732077d6dSBarry Smith if (iascii) { 618b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 619456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 620a30f8f8cSSatish Balay MatInfo info; 6217adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 622a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 624d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 625d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 62977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 630b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 633a30f8f8cSSatish Balay PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 638c1490034SHong Zhang PetscFunctionReturn(0); 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay if (isdraw) { 643b0a32e0cSBarry Smith PetscDraw draw; 644a30f8f8cSSatish Balay PetscTruth isnull; 645b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 646b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay if (size == 1) { 6507adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 651a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 652a30f8f8cSSatish Balay } else { 653a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 654a30f8f8cSSatish Balay Mat A; 65565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 657d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 658a30f8f8cSSatish Balay MatScalar *a; 659a30f8f8cSSatish Balay 660f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6617adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 662a30f8f8cSSatish Balay if (!rank) { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } else { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 668d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 66952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay /* copy over the A part */ 67265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6741302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 677e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 678a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 679a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 680e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 681a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 682dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 683a30f8f8cSSatish Balay col++; a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 693a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 698a30f8f8cSSatish Balay col++; a += bs; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay /* 706a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 707b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 708a30f8f8cSSatish Balay */ 709b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71065d70643SHong Zhang if (!rank) { 7117adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 713a30f8f8cSSatish Balay } 714b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay PetscFunctionReturn(0); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay 7204a2ae208SSatish Balay #undef __FUNCT__ 7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 723a30f8f8cSSatish Balay { 724dfbe8321SBarry Smith PetscErrorCode ierr; 72532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay PetscFunctionBegin; 72832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 729fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 730b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 731fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 733a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 7351302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay PetscFunctionReturn(0); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay 7404a2ae208SSatish Balay #undef __FUNCT__ 7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 743a30f8f8cSSatish Balay { 744a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 745dfbe8321SBarry Smith PetscErrorCode ierr; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay PetscFunctionBegin; 748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 749d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 750a30f8f8cSSatish Balay #endif 751a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 752a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7569c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 757a30f8f8cSSatish Balay #else 75805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #endif 76005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 761a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 762a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76340781036SHong Zhang if (baij->slvec0) { 76440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76640781036SHong Zhang } 76740781036SHong Zhang if (baij->slvec1) { 76840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 76940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77140781036SHong Zhang } 77240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 77305b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 776fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 777fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 778fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 779a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 78005b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 781a30f8f8cSSatish Balay #endif 78259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 784899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 786901853e0SKris Buschelman 787dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 788901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 789901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 792a30f8f8cSSatish Balay PetscFunctionReturn(0); 793a30f8f8cSSatish Balay } 794a30f8f8cSSatish Balay 7954a2ae208SSatish Balay #undef __FUNCT__ 796*547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 797*547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 798*547795f9SHong Zhang { 799*547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 800*547795f9SHong Zhang PetscErrorCode ierr; 801*547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 802*547795f9SHong Zhang PetscScalar *x,*from; 803*547795f9SHong Zhang 804*547795f9SHong Zhang PetscFunctionBegin; 805*547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 806*547795f9SHong Zhang if (nt != A->cmap->n) { 807*547795f9SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 808*547795f9SHong Zhang } 809*547795f9SHong Zhang 810*547795f9SHong Zhang /* diagonal part */ 811*547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 812*547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 813*547795f9SHong Zhang 814*547795f9SHong Zhang /* subdiagonal part */ 815*547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 816*547795f9SHong Zhang 817*547795f9SHong Zhang /* copy x into the vec slvec0 */ 818*547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 819*547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 820*547795f9SHong Zhang 821*547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 822*547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 823*547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 824*547795f9SHong Zhang 825*547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826*547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827*547795f9SHong Zhang /* supperdiagonal part */ 828*547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 829*547795f9SHong Zhang PetscFunctionReturn(0); 830*547795f9SHong Zhang } 831*547795f9SHong Zhang 832*547795f9SHong Zhang #undef __FUNCT__ 833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 835a9d4b620SHong Zhang { 836a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 837dfbe8321SBarry Smith PetscErrorCode ierr; 838d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 839fa22f6d0SBarry Smith PetscScalar *x,*from; 840a9d4b620SHong Zhang 841a9d4b620SHong Zhang PetscFunctionBegin; 842a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 843d0f46423SBarry Smith if (nt != A->cmap->n) { 844a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 845a9d4b620SHong Zhang } 846a9d4b620SHong Zhang 847a9d4b620SHong Zhang /* diagonal part */ 848a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 849fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 850a9d4b620SHong Zhang 851a9d4b620SHong Zhang /* subdiagonal part */ 852a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 853fc165ae2SBarry Smith 854a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8551ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8561ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 857a9d4b620SHong Zhang 858fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 859fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8601ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 861fc165ae2SBarry Smith 862fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 863ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 864a9d4b620SHong Zhang /* supperdiagonal part */ 865a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 866a9d4b620SHong Zhang PetscFunctionReturn(0); 867a9d4b620SHong Zhang } 868a9d4b620SHong Zhang 869a9d4b620SHong Zhang #undef __FUNCT__ 87040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 871dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 872a30f8f8cSSatish Balay { 873a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 874dfbe8321SBarry Smith PetscErrorCode ierr; 8751302d50aSBarry Smith PetscInt nt; 876a30f8f8cSSatish Balay 877a30f8f8cSSatish Balay PetscFunctionBegin; 878a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 879d0f46423SBarry Smith if (nt != A->cmap->n) { 88029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 881a30f8f8cSSatish Balay } 882a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 883d0f46423SBarry Smith if (nt != A->rmap->N) { 88429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 885a30f8f8cSSatish Balay } 88665d70643SHong Zhang 887ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 888b941877fSHong Zhang /* do diagonal part */ 889b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 890b941877fSHong Zhang /* do supperdiagonal part */ 891ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 892b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 893b941877fSHong Zhang /* do subdiagonal part */ 894b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 895ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 896ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89765d70643SHong Zhang 898a30f8f8cSSatish Balay PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay 9014a2ae208SSatish Balay #undef __FUNCT__ 9024a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 903dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 904a30f8f8cSSatish Balay { 905de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 906dfbe8321SBarry Smith PetscErrorCode ierr; 907d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 908a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 909a9d4b620SHong Zhang 910a9d4b620SHong Zhang PetscFunctionBegin; 911a9d4b620SHong Zhang /* 9127adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9137adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 914a9d4b620SHong Zhang */ 915a9d4b620SHong Zhang /* diagonal part */ 916a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9172dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 918a9d4b620SHong Zhang 919a9d4b620SHong Zhang /* subdiagonal part */ 920a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 921a9d4b620SHong Zhang 922a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9231ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9241ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 925a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9261ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 927a9d4b620SHong Zhang 928ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9291ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 930ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 931a9d4b620SHong Zhang 932a9d4b620SHong Zhang /* supperdiagonal part */ 933a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 934a9d4b620SHong Zhang 935a9d4b620SHong Zhang PetscFunctionReturn(0); 936a9d4b620SHong Zhang } 937a9d4b620SHong Zhang 938a9d4b620SHong Zhang #undef __FUNCT__ 939a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 940dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 941a9d4b620SHong Zhang { 942a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 943dfbe8321SBarry Smith PetscErrorCode ierr; 944a30f8f8cSSatish Balay 945a30f8f8cSSatish Balay PetscFunctionBegin; 946ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 947b941877fSHong Zhang /* do diagonal part */ 948b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 949b941877fSHong Zhang /* do supperdiagonal part */ 950ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 951de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 952de8b6608SHong Zhang 953b941877fSHong Zhang /* do subdiagonal part */ 954a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 955ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 956ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 957aa482183SHong Zhang 958a30f8f8cSSatish Balay PetscFunctionReturn(0); 959a30f8f8cSSatish Balay } 960a30f8f8cSSatish Balay 961a30f8f8cSSatish Balay /* 962a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 963a30f8f8cSSatish Balay diagonal block 964a30f8f8cSSatish Balay */ 9654a2ae208SSatish Balay #undef __FUNCT__ 9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 968a30f8f8cSSatish Balay { 969a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 970dfbe8321SBarry Smith PetscErrorCode ierr; 971a30f8f8cSSatish Balay 972a30f8f8cSSatish Balay PetscFunctionBegin; 973d0f46423SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 974a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 975a30f8f8cSSatish Balay PetscFunctionReturn(0); 976a30f8f8cSSatish Balay } 977a30f8f8cSSatish Balay 9784a2ae208SSatish Balay #undef __FUNCT__ 9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 981a30f8f8cSSatish Balay { 982a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 983dfbe8321SBarry Smith PetscErrorCode ierr; 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay PetscFunctionBegin; 986f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 987f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 988a30f8f8cSSatish Balay PetscFunctionReturn(0); 989a30f8f8cSSatish Balay } 990a30f8f8cSSatish Balay 9914a2ae208SSatish Balay #undef __FUNCT__ 9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 994a30f8f8cSSatish Balay { 995d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 996d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 997d0d4cfc2SHong Zhang PetscErrorCode ierr; 998d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 999d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1000899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1001d0d4cfc2SHong Zhang 1002a30f8f8cSSatish Balay PetscFunctionBegin; 10034eeb8337SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1004d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1005d0d4cfc2SHong Zhang 1006d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1007d0d4cfc2SHong Zhang /* 1008d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1009d0d4cfc2SHong Zhang */ 1010d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1011d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1012d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1013d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1014d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1015d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1016d0d4cfc2SHong Zhang } 1017d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1018d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1019d0d4cfc2SHong Zhang } 1020d0d4cfc2SHong Zhang 1021d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1022d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1023d0d4cfc2SHong Zhang 1024d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1025d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1026d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1027d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1028d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1029d0d4cfc2SHong Zhang nztot = nzA + nzB; 1030d0d4cfc2SHong Zhang 1031d0d4cfc2SHong Zhang cmap = mat->garray; 1032d0d4cfc2SHong Zhang if (v || idx) { 1033d0d4cfc2SHong Zhang if (nztot) { 1034d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1035d0d4cfc2SHong Zhang PetscInt imark = -1; 1036d0d4cfc2SHong Zhang if (v) { 1037d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1038d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1039d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1040d0d4cfc2SHong Zhang else break; 1041d0d4cfc2SHong Zhang } 1042d0d4cfc2SHong Zhang imark = i; 1043d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1044d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang if (idx) { 1047d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1048d0d4cfc2SHong Zhang if (imark > -1) { 1049d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1050d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1051d0d4cfc2SHong Zhang } 1052d0d4cfc2SHong Zhang } else { 1053d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1054d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1055d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1056d0d4cfc2SHong Zhang else break; 1057d0d4cfc2SHong Zhang } 1058d0d4cfc2SHong Zhang imark = i; 1059d0d4cfc2SHong Zhang } 1060d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1061d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1062d0d4cfc2SHong Zhang } 1063d0d4cfc2SHong Zhang } else { 1064d0d4cfc2SHong Zhang if (idx) *idx = 0; 1065d0d4cfc2SHong Zhang if (v) *v = 0; 1066d0d4cfc2SHong Zhang } 1067d0d4cfc2SHong Zhang } 1068d0d4cfc2SHong Zhang *nz = nztot; 1069d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1070d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1071a30f8f8cSSatish Balay PetscFunctionReturn(0); 1072a30f8f8cSSatish Balay } 1073a30f8f8cSSatish Balay 10744a2ae208SSatish Balay #undef __FUNCT__ 10754a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10761302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1077a30f8f8cSSatish Balay { 1078a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1079a30f8f8cSSatish Balay 1080a30f8f8cSSatish Balay PetscFunctionBegin; 1081abc0a331SBarry Smith if (!baij->getrowactive) { 1082abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1083a30f8f8cSSatish Balay } 1084a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1085a30f8f8cSSatish Balay PetscFunctionReturn(0); 1086a30f8f8cSSatish Balay } 1087a30f8f8cSSatish Balay 10884a2ae208SSatish Balay #undef __FUNCT__ 1089d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1090d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1091d0d4cfc2SHong Zhang { 1092d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1093d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1094d0d4cfc2SHong Zhang 1095d0d4cfc2SHong Zhang PetscFunctionBegin; 1096d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1097d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1098d0d4cfc2SHong Zhang } 1099d0d4cfc2SHong Zhang #undef __FUNCT__ 1100d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1101d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1102d0d4cfc2SHong Zhang { 1103d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1104d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1105d0d4cfc2SHong Zhang 1106d0d4cfc2SHong Zhang PetscFunctionBegin; 1107d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1108d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1109d0d4cfc2SHong Zhang } 1110d0d4cfc2SHong Zhang 1111d0d4cfc2SHong Zhang #undef __FUNCT__ 111299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 111399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111499cafbc1SBarry Smith { 111599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111699cafbc1SBarry Smith PetscErrorCode ierr; 111799cafbc1SBarry Smith 111899cafbc1SBarry Smith PetscFunctionBegin; 111999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 112099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 112199cafbc1SBarry Smith PetscFunctionReturn(0); 112299cafbc1SBarry Smith } 112399cafbc1SBarry Smith 112499cafbc1SBarry Smith #undef __FUNCT__ 112599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112799cafbc1SBarry Smith { 112899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112999cafbc1SBarry Smith PetscErrorCode ierr; 113099cafbc1SBarry Smith 113199cafbc1SBarry Smith PetscFunctionBegin; 113299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 113399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113499cafbc1SBarry Smith PetscFunctionReturn(0); 113599cafbc1SBarry Smith } 113699cafbc1SBarry Smith 113799cafbc1SBarry Smith #undef __FUNCT__ 11384a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1139dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1140a30f8f8cSSatish Balay { 1141a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1142dfbe8321SBarry Smith PetscErrorCode ierr; 1143a30f8f8cSSatish Balay 1144a30f8f8cSSatish Balay PetscFunctionBegin; 1145a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1146a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1147a30f8f8cSSatish Balay PetscFunctionReturn(0); 1148a30f8f8cSSatish Balay } 1149a30f8f8cSSatish Balay 11504a2ae208SSatish Balay #undef __FUNCT__ 11514a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1152dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1153a30f8f8cSSatish Balay { 1154a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1155a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1156dfbe8321SBarry Smith PetscErrorCode ierr; 1157a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1158a30f8f8cSSatish Balay 1159a30f8f8cSSatish Balay PetscFunctionBegin; 1160d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1161a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1162a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1163a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1164a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1165a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1166a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1167a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1168a30f8f8cSSatish Balay info->nz_used = isend[0]; 1169a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1170a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1171a30f8f8cSSatish Balay info->memory = isend[3]; 1172a30f8f8cSSatish Balay info->mallocs = isend[4]; 1173a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11747adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1176a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1177a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1178a30f8f8cSSatish Balay info->memory = irecv[3]; 1179a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1180a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11817adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1182a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1183a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1184a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1185a30f8f8cSSatish Balay info->memory = irecv[3]; 1186a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1187a30f8f8cSSatish Balay } else { 118877431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1189a30f8f8cSSatish Balay } 1190a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1191a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1192a30f8f8cSSatish Balay info->factor_mallocs = 0; 1193a30f8f8cSSatish Balay PetscFunctionReturn(0); 1194a30f8f8cSSatish Balay } 1195a30f8f8cSSatish Balay 11964a2ae208SSatish Balay #undef __FUNCT__ 11974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11984e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1199a30f8f8cSSatish Balay { 1200a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1201d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1202dfbe8321SBarry Smith PetscErrorCode ierr; 1203a30f8f8cSSatish Balay 1204a30f8f8cSSatish Balay PetscFunctionBegin; 1205e98b92d7SKris Buschelman switch (op) { 1206512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1207e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1209a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1210e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12114e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12124e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12154e0d8c25SBarry Smith a->roworiented = flg; 12164e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12174e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1218e98b92d7SKris Buschelman break; 12194e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1220290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1221e98b92d7SKris Buschelman break; 1222e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12234e0d8c25SBarry Smith a->donotstash = flg; 1224e98b92d7SKris Buschelman break; 1225e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12264e0d8c25SBarry Smith a->ht_flag = flg; 1227e98b92d7SKris Buschelman break; 12289a4540c5SBarry Smith case MAT_HERMITIAN: 1229*547795f9SHong Zhang if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1230eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1231*547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1232eeffb40dSHong Zhang break; 123377e54ba9SKris Buschelman case MAT_SYMMETRIC: 1234eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1235eeffb40dSHong Zhang break; 123677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1237eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1238eeffb40dSHong Zhang break; 12399a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12404e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1241290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124277e54ba9SKris Buschelman break; 1243d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12444e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1245d0d4cfc2SHong Zhang break; 1246d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12474e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1248d0d4cfc2SHong Zhang break; 1249d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12504e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1251d0d4cfc2SHong Zhang break; 1252e98b92d7SKris Buschelman default: 1253ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay PetscFunctionReturn(0); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay 12584a2ae208SSatish Balay #undef __FUNCT__ 12598115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1260fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1261a30f8f8cSSatish Balay { 1262dfbe8321SBarry Smith PetscErrorCode ierr; 1263a30f8f8cSSatish Balay PetscFunctionBegin; 1264815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1265999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1266fc4dec0aSBarry Smith } 12678115998fSBarry Smith PetscFunctionReturn(0); 1268a30f8f8cSSatish Balay } 1269a30f8f8cSSatish Balay 12704a2ae208SSatish Balay #undef __FUNCT__ 12714a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1272dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1273a30f8f8cSSatish Balay { 1274a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1275a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1276dfbe8321SBarry Smith PetscErrorCode ierr; 12775e90f9d9SHong Zhang PetscInt nv,m,n; 1278b3bf805bSHong Zhang PetscTruth flg; 1279a30f8f8cSSatish Balay 1280a30f8f8cSSatish Balay PetscFunctionBegin; 1281a30f8f8cSSatish Balay if (ll != rr){ 1282b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1283b3bf805bSHong Zhang if (!flg) 128429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1285a30f8f8cSSatish Balay } 1286b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1287b3bf805bSHong Zhang 12885e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12895e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1290b3bf805bSHong Zhang 12915e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12925e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12935e90f9d9SHong Zhang 1294ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12955e90f9d9SHong Zhang 12965e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1297a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12985e90f9d9SHong Zhang 12995e90f9d9SHong Zhang /* scale the diagonal part */ 1300a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay 13025e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1303ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1304a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay PetscFunctionReturn(0); 1306a30f8f8cSSatish Balay } 1307a30f8f8cSSatish Balay 13084a2ae208SSatish Balay #undef __FUNCT__ 13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1311a30f8f8cSSatish Balay { 1312f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1313dfbe8321SBarry Smith PetscErrorCode ierr; 1314a30f8f8cSSatish Balay 1315a30f8f8cSSatish Balay PetscFunctionBegin; 1316a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1317a30f8f8cSSatish Balay PetscFunctionReturn(0); 1318a30f8f8cSSatish Balay } 1319a30f8f8cSSatish Balay 13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1321a30f8f8cSSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1324dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1325a30f8f8cSSatish Balay { 1326a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1327a30f8f8cSSatish Balay Mat a,b,c,d; 1328a30f8f8cSSatish Balay PetscTruth flg; 1329dfbe8321SBarry Smith PetscErrorCode ierr; 1330a30f8f8cSSatish Balay 1331a30f8f8cSSatish Balay PetscFunctionBegin; 1332a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1333a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1334a30f8f8cSSatish Balay 1335a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1336abc0a331SBarry Smith if (flg) { 1337a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay } 13397adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay PetscFunctionReturn(0); 1341a30f8f8cSSatish Balay } 1342a30f8f8cSSatish Balay 13434a2ae208SSatish Balay #undef __FUNCT__ 13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13463c896bc6SHong Zhang { 13473c896bc6SHong Zhang PetscErrorCode ierr; 13483c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13493c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13503c896bc6SHong Zhang 13513c896bc6SHong Zhang PetscFunctionBegin; 13523c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13533c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1354d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13553c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1356d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang } else { 13583c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13593c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang } 13613c896bc6SHong Zhang PetscFunctionReturn(0); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang 13643c896bc6SHong Zhang #undef __FUNCT__ 13654a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1366dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1367273d9f13SBarry Smith { 1368dfbe8321SBarry Smith PetscErrorCode ierr; 1369273d9f13SBarry Smith 1370273d9f13SBarry Smith PetscFunctionBegin; 1371db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1372273d9f13SBarry Smith PetscFunctionReturn(0); 1373273d9f13SBarry Smith } 1374a5e6ed63SBarry Smith 13754fe895cdSHong Zhang #include "petscblaslapack.h" 13764fe895cdSHong Zhang #undef __FUNCT__ 13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13794fe895cdSHong Zhang { 13804fe895cdSHong Zhang PetscErrorCode ierr; 13814fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13824fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13834fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13844fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13854fe895cdSHong Zhang 13864fe895cdSHong Zhang PetscFunctionBegin; 13874fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13884fe895cdSHong Zhang PetscScalar alpha = a; 13894fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13904fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13910805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13934fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13944fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13950805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13964fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13974fe895cdSHong Zhang } else { 1398d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13994fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1400d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14014fe895cdSHong Zhang } 14024fe895cdSHong Zhang PetscFunctionReturn(0); 14034fe895cdSHong Zhang } 14044fe895cdSHong Zhang 1405a5e6ed63SBarry Smith #undef __FUNCT__ 1406a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14071302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1408a5e6ed63SBarry Smith { 14096849ba73SBarry Smith PetscErrorCode ierr; 14101302d50aSBarry Smith PetscInt i; 1411a5e6ed63SBarry Smith PetscTruth flg; 1412a5e6ed63SBarry Smith 14136849ba73SBarry Smith PetscFunctionBegin; 1414a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1415a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1416a5e6ed63SBarry Smith if (!flg) { 14171302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1418a5e6ed63SBarry Smith } 1419a5e6ed63SBarry Smith } 1420a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1421a5e6ed63SBarry Smith PetscFunctionReturn(0); 1422a5e6ed63SBarry Smith } 1423a5e6ed63SBarry Smith 1424a5e6ed63SBarry Smith 1425a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1426a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1427a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1428a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1429a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1430a9d4b620SHong Zhang MatMult_MPISBAIJ, 143197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1432431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1433431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1434a30f8f8cSSatish Balay 0, 1435a30f8f8cSSatish Balay 0, 1436a30f8f8cSSatish Balay 0, 143797304618SKris Buschelman /*10*/ 0, 1438a30f8f8cSSatish Balay 0, 1439a30f8f8cSSatish Balay 0, 144041f059aeSBarry Smith MatSOR_MPISBAIJ, 1441a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 144297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1443a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1444a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1445a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1446a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 144797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1448a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1449a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1450a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1451d519adbfSMatthew Knepley /*24*/ 0, 1452a30f8f8cSSatish Balay 0, 1453a30f8f8cSSatish Balay 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 1456d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1457b5df2d14SHong Zhang 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464a30f8f8cSSatish Balay 0, 1465a30f8f8cSSatish Balay 0, 1466d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1467a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1468d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1469a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14703c896bc6SHong Zhang MatCopy_MPISBAIJ, 1471d519adbfSMatthew Knepley /*44*/ 0, 1472a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476d519adbfSMatthew Knepley /*49*/ 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481d519adbfSMatthew Knepley /*54*/ 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1486d519adbfSMatthew Knepley /*59*/ 0, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay 0, 1489357abbc8SBarry Smith 0, 149024d5174aSHong Zhang 0, 1491d519adbfSMatthew Knepley /*64*/ 0, 149224d5174aSHong Zhang 0, 149324d5174aSHong Zhang 0, 149424d5174aSHong Zhang 0, 149524d5174aSHong Zhang 0, 1496d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 149724d5174aSHong Zhang 0, 149897304618SKris Buschelman 0, 149997304618SKris Buschelman 0, 150097304618SKris Buschelman 0, 1501d519adbfSMatthew Knepley /*74*/ 0, 150297304618SKris Buschelman 0, 150397304618SKris Buschelman 0, 150497304618SKris Buschelman 0, 150597304618SKris Buschelman 0, 1506d519adbfSMatthew Knepley /*79*/ 0, 150797304618SKris Buschelman 0, 150897304618SKris Buschelman 0, 150997304618SKris Buschelman 0, 1510865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1511d519adbfSMatthew Knepley /*84*/ 0, 1512865e5f61SKris Buschelman 0, 1513865e5f61SKris Buschelman 0, 1514865e5f61SKris Buschelman 0, 1515865e5f61SKris Buschelman 0, 1516d519adbfSMatthew Knepley /*89*/ 0, 1517865e5f61SKris Buschelman 0, 1518865e5f61SKris Buschelman 0, 1519865e5f61SKris Buschelman 0, 1520865e5f61SKris Buschelman 0, 1521d519adbfSMatthew Knepley /*94*/ 0, 1522865e5f61SKris Buschelman 0, 1523865e5f61SKris Buschelman 0, 152499cafbc1SBarry Smith 0, 152599cafbc1SBarry Smith 0, 1526d519adbfSMatthew Knepley /*99*/ 0, 152799cafbc1SBarry Smith 0, 152899cafbc1SBarry Smith 0, 152999cafbc1SBarry Smith 0, 153099cafbc1SBarry Smith 0, 1531d519adbfSMatthew Knepley /*104*/0, 153299cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1533d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1534d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1535d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 153699cafbc1SBarry Smith }; 1537a30f8f8cSSatish Balay 1538a30f8f8cSSatish Balay 1539a30f8f8cSSatish Balay EXTERN_C_BEGIN 15404a2ae208SSatish Balay #undef __FUNCT__ 15414a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1542be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1543a30f8f8cSSatish Balay { 1544a30f8f8cSSatish Balay PetscFunctionBegin; 1545a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1546a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1547a30f8f8cSSatish Balay PetscFunctionReturn(0); 1548a30f8f8cSSatish Balay } 1549a30f8f8cSSatish Balay EXTERN_C_END 1550a30f8f8cSSatish Balay 1551273d9f13SBarry Smith EXTERN_C_BEGIN 15524a2ae208SSatish Balay #undef __FUNCT__ 1553a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1554be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1555a23d5eceSKris Buschelman { 1556a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1557dfbe8321SBarry Smith PetscErrorCode ierr; 1558db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1559a23d5eceSKris Buschelman 1560a23d5eceSKris Buschelman PetscFunctionBegin; 1561db4efbfdSBarry Smith if (bs < 0){ 15627adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1563db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15648c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1565db4efbfdSBarry Smith bs = PetscAbs(bs); 1566db4efbfdSBarry Smith } 1567db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 1568db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1569db4efbfdSBarry Smith } 1570db4efbfdSBarry Smith bs = newbs; 1571a23d5eceSKris Buschelman 1572a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1573a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 157477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 157577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1576899cda47SBarry Smith 1577d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 157826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 157926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1580899cda47SBarry Smith 1581a23d5eceSKris Buschelman if (d_nnz) { 1582d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 158377431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1584a23d5eceSKris Buschelman } 1585a23d5eceSKris Buschelman } 1586a23d5eceSKris Buschelman if (o_nnz) { 1587d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 158877431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1589a23d5eceSKris Buschelman } 1590a23d5eceSKris Buschelman } 1591a23d5eceSKris Buschelman 1592a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1593d0f46423SBarry Smith mbs = B->rmap->n/bs; 1594d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1595d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1596d0f46423SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1597a23d5eceSKris Buschelman } 1598a23d5eceSKris Buschelman 1599d0f46423SBarry Smith B->rmap->bs = bs; 1600a23d5eceSKris Buschelman b->bs2 = bs*bs; 1601a23d5eceSKris Buschelman b->mbs = mbs; 1602a23d5eceSKris Buschelman b->nbs = mbs; 1603a23d5eceSKris Buschelman b->Mbs = Mbs; 1604a23d5eceSKris Buschelman b->Nbs = Mbs; 1605a23d5eceSKris Buschelman 1606a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1607d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1608a23d5eceSKris Buschelman } 1609d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1610d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1611a23d5eceSKris Buschelman 1612d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1613d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1614a23d5eceSKris Buschelman 1615526dfc15SBarry Smith if (!B->preallocated) { 1616f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1617d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16189c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 161952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1620f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1621d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16224aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 162352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1624a23d5eceSKris Buschelman /* build cache for off array entries formed */ 16257adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1626526dfc15SBarry Smith } 1627a23d5eceSKris Buschelman 1628526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1629526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1630526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1631a23d5eceSKris Buschelman PetscFunctionReturn(0); 1632a23d5eceSKris Buschelman } 1633a23d5eceSKris Buschelman EXTERN_C_END 1634a23d5eceSKris Buschelman 16355c9eb25fSBarry Smith EXTERN_C_BEGIN 1636611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1637611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1638611f576cSBarry Smith #endif 1639611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16405c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1641611f576cSBarry Smith #endif 1642b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1643b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1644b5e56a35SBarry Smith #endif 16455c9eb25fSBarry Smith EXTERN_C_END 16465c9eb25fSBarry Smith 16470bad9183SKris Buschelman /*MC 1648fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16490bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16500bad9183SKris Buschelman 16510bad9183SKris Buschelman Options Database Keys: 16520bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16530bad9183SKris Buschelman 16540bad9183SKris Buschelman Level: beginner 16550bad9183SKris Buschelman 16560bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16570bad9183SKris Buschelman M*/ 16580bad9183SKris Buschelman 1659a23d5eceSKris Buschelman EXTERN_C_BEGIN 1660a23d5eceSKris Buschelman #undef __FUNCT__ 16614a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1662be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1663b5df2d14SHong Zhang { 1664b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1665dfbe8321SBarry Smith PetscErrorCode ierr; 1666b5df2d14SHong Zhang PetscTruth flg; 1667b5df2d14SHong Zhang 1668b5df2d14SHong Zhang PetscFunctionBegin; 1669b5df2d14SHong Zhang 167038f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1671b0a32e0cSBarry Smith B->data = (void*)b; 1672b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1673b5df2d14SHong Zhang 1674b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1675b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1676b5df2d14SHong Zhang B->mapping = 0; 1677b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1678b5df2d14SHong Zhang 1679b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16807adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16817adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1682b5df2d14SHong Zhang 1683b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1684899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1685b5df2d14SHong Zhang 1686b5df2d14SHong Zhang /* build cache for off array entries formed */ 16877adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1688b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1689b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1690b5df2d14SHong Zhang b->garray = PETSC_NULL; 1691b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1692b5df2d14SHong Zhang 1693b5df2d14SHong Zhang /* stuff used in block assembly */ 1694b5df2d14SHong Zhang b->barray = 0; 1695b5df2d14SHong Zhang 1696b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1697b5df2d14SHong Zhang b->lvec = 0; 1698b5df2d14SHong Zhang b->Mvctx = 0; 169940781036SHong Zhang b->slvec0 = 0; 170040781036SHong Zhang b->slvec0b = 0; 170140781036SHong Zhang b->slvec1 = 0; 170240781036SHong Zhang b->slvec1a = 0; 170340781036SHong Zhang b->slvec1b = 0; 170440781036SHong Zhang b->sMvctx = 0; 1705b5df2d14SHong Zhang 1706b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1707b5df2d14SHong Zhang b->rowindices = 0; 1708b5df2d14SHong Zhang b->rowvalues = 0; 1709b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1710b5df2d14SHong Zhang 1711b5df2d14SHong Zhang /* hash table stuff */ 1712b5df2d14SHong Zhang b->ht = 0; 1713b5df2d14SHong Zhang b->hd = 0; 1714b5df2d14SHong Zhang b->ht_size = 0; 1715b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1716b5df2d14SHong Zhang b->ht_fact = 0; 1717b5df2d14SHong Zhang b->ht_total_ct = 0; 1718b5df2d14SHong Zhang b->ht_insert_ct = 0; 1719b5df2d14SHong Zhang 172059ffdab8SBarry Smith b->in_loc = 0; 172159ffdab8SBarry Smith b->v_loc = 0; 172259ffdab8SBarry Smith b->n_loc = 0; 17237adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17248c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1725b5df2d14SHong Zhang if (flg) { 1726f6275e2eSBarry Smith PetscReal fact = 1.39; 17274e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17288c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1729b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1730b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17311e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1732b5df2d14SHong Zhang } 17338c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17348c07d4e3SBarry Smith 1735b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1736ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1737b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1738b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1739b5e56a35SBarry Smith #endif 1740611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1741ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 17425c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 17435c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1744611f576cSBarry Smith #endif 1745611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1746ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17475c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17485c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1749611f576cSBarry Smith #endif 1750b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1751b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1752b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1753b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1754b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1755b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1756b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1757b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1758b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1759a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1760a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1761a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 176223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 176323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 176423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 176523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 176617667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1767b5df2d14SHong Zhang PetscFunctionReturn(0); 1768b5df2d14SHong Zhang } 1769273d9f13SBarry Smith EXTERN_C_END 1770b5df2d14SHong Zhang 1771209238afSKris Buschelman /*MC 1772002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1773209238afSKris Buschelman 1774209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1775209238afSKris Buschelman and MATMPISBAIJ otherwise. 1776209238afSKris Buschelman 1777209238afSKris Buschelman Options Database Keys: 1778209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1779209238afSKris Buschelman 1780209238afSKris Buschelman Level: beginner 1781209238afSKris Buschelman 1782209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1783209238afSKris Buschelman M*/ 1784209238afSKris Buschelman 1785209238afSKris Buschelman EXTERN_C_BEGIN 1786209238afSKris Buschelman #undef __FUNCT__ 1787209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1788be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1789dfbe8321SBarry Smith { 17906849ba73SBarry Smith PetscErrorCode ierr; 17911302d50aSBarry Smith PetscMPIInt size; 1792209238afSKris Buschelman 1793209238afSKris Buschelman PetscFunctionBegin; 17947adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1795209238afSKris Buschelman if (size == 1) { 1796209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1797209238afSKris Buschelman } else { 1798209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1799209238afSKris Buschelman } 1800209238afSKris Buschelman PetscFunctionReturn(0); 1801209238afSKris Buschelman } 1802209238afSKris Buschelman EXTERN_C_END 1803209238afSKris Buschelman 18044a2ae208SSatish Balay #undef __FUNCT__ 18054a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1806b5df2d14SHong Zhang /*@C 1807b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1808b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1809b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1810b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1811b5df2d14SHong Zhang 1812b5df2d14SHong Zhang Collective on Mat 1813b5df2d14SHong Zhang 1814b5df2d14SHong Zhang Input Parameters: 1815b5df2d14SHong Zhang + A - the matrix 1816b5df2d14SHong Zhang . bs - size of blockk 1817b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1818b5df2d14SHong Zhang submatrix (same for all local rows) 1819b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18206d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18216d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18226d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1823b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1824b5df2d14SHong Zhang submatrix (same for all local rows). 1825b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1826b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1827b5df2d14SHong Zhang each block row) or PETSC_NULL. 1828b5df2d14SHong Zhang 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang Options Database Keys: 1831b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1832b5df2d14SHong Zhang block calculations (much slower) 1833b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1834b5df2d14SHong Zhang 1835b5df2d14SHong Zhang Notes: 1836b5df2d14SHong Zhang 1837b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1838b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1839b5df2d14SHong Zhang 184049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 184149a6f317SBarry Smith 1842b5df2d14SHong Zhang Storage Information: 1843b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1844b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1845b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1846b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1849b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1850b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1851b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1852b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1853b5df2d14SHong Zhang 1854aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1855aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1856aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1857aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1858aa95bbe8SBarry Smith 1859b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1860b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1861b5df2d14SHong Zhang 1862b5df2d14SHong Zhang .vb 1863b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1864b5df2d14SHong Zhang ------------------- 1865b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1866b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1867b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1868b5df2d14SHong Zhang ------------------- 1869b5df2d14SHong Zhang .ve 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1872b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18736d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18746d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1875b5df2d14SHong Zhang 18766d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18776d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1878b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1879b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1880b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1881b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1882b5df2d14SHong Zhang matrices. 1883b5df2d14SHong Zhang 1884b5df2d14SHong Zhang Level: intermediate 1885b5df2d14SHong Zhang 1886b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1887b5df2d14SHong Zhang 1888b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1889b5df2d14SHong Zhang @*/ 1890be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1891b5df2d14SHong Zhang { 18921302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1893b5df2d14SHong Zhang 1894b5df2d14SHong Zhang PetscFunctionBegin; 1895a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1896a23d5eceSKris Buschelman if (f) { 1897a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1898b5df2d14SHong Zhang } 1899b5df2d14SHong Zhang PetscFunctionReturn(0); 1900b5df2d14SHong Zhang } 1901b5df2d14SHong Zhang 19024a2ae208SSatish Balay #undef __FUNCT__ 19034a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1904a30f8f8cSSatish Balay /*@C 1905a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1906a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1907a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1908a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1909a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1910a30f8f8cSSatish Balay 1911a30f8f8cSSatish Balay Collective on MPI_Comm 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay Input Parameters: 1914a30f8f8cSSatish Balay + comm - MPI communicator 1915a30f8f8cSSatish Balay . bs - size of blockk 1916a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1917a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1918a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1919a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1920a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1921a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1922a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1923a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1924a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1925a30f8f8cSSatish Balay submatrix (same for all local rows) 1926a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19276d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19286d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19296d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1930a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1931a30f8f8cSSatish Balay submatrix (same for all local rows). 1932a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1933a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1934a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay Output Parameter: 1937a30f8f8cSSatish Balay . A - the matrix 1938a30f8f8cSSatish Balay 1939a30f8f8cSSatish Balay Options Database Keys: 1940a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1941a30f8f8cSSatish Balay block calculations (much slower) 1942a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1943a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1944a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1945a30f8f8cSSatish Balay 1946175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1947ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1948175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1949175b88e8SBarry Smith 1950a30f8f8cSSatish Balay Notes: 1951d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19526d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1953d1be2dadSMatthew Knepley 1954a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1955a30f8f8cSSatish Balay (possibly both). 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1958a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1959a30f8f8cSSatish Balay 196049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 196149a6f317SBarry Smith 1962a30f8f8cSSatish Balay Storage Information: 1963a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1964a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1965a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1966a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1969a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1970a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1971a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1972a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1973a30f8f8cSSatish Balay 1974a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1975a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay .vb 1978a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1979a30f8f8cSSatish Balay ------------------- 1980a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1981a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1982a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1983a30f8f8cSSatish Balay ------------------- 1984a30f8f8cSSatish Balay .ve 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1987a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19886d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19896d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1990a30f8f8cSSatish Balay 19916d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19926d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1993a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1994a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1995a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1996a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1997a30f8f8cSSatish Balay matrices. 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay Level: intermediate 2000a30f8f8cSSatish Balay 2001a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2002a30f8f8cSSatish Balay 2003a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2004a30f8f8cSSatish Balay @*/ 2005a30f8f8cSSatish Balay 2006be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2007a30f8f8cSSatish Balay { 20086849ba73SBarry Smith PetscErrorCode ierr; 20091302d50aSBarry Smith PetscMPIInt size; 2010a30f8f8cSSatish Balay 2011a30f8f8cSSatish Balay PetscFunctionBegin; 2012f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2013f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2014273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2015273d9f13SBarry Smith if (size > 1) { 2016b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2017b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2018273d9f13SBarry Smith } else { 2019273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2020273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2021273d9f13SBarry Smith } 2022a30f8f8cSSatish Balay PetscFunctionReturn(0); 2023a30f8f8cSSatish Balay } 2024a30f8f8cSSatish Balay 2025a30f8f8cSSatish Balay 20264a2ae208SSatish Balay #undef __FUNCT__ 20274a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20286849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2029a30f8f8cSSatish Balay { 2030a30f8f8cSSatish Balay Mat mat; 2031a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2032dfbe8321SBarry Smith PetscErrorCode ierr; 2033d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2034387bc808SHong Zhang PetscScalar *array; 2035a30f8f8cSSatish Balay 2036a30f8f8cSSatish Balay PetscFunctionBegin; 2037a30f8f8cSSatish Balay *newmat = 0; 20387adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2039d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20407adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20411d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 204226283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 204326283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2044e1b6402fSHong Zhang 204582327fa8SHong Zhang mat->factor = matin->factor; 2046273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 204782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20487fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20497fff6886SHong Zhang 2050b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2051a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2052a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2053a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2054a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2055a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2056a30f8f8cSSatish Balay 2057899cda47SBarry Smith 2058a30f8f8cSSatish Balay a->size = oldmat->size; 2059a30f8f8cSSatish Balay a->rank = oldmat->rank; 2060a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2061a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2062a30f8f8cSSatish Balay a->rowindices = 0; 2063a30f8f8cSSatish Balay a->rowvalues = 0; 2064a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2065a30f8f8cSSatish Balay a->barray = 0; 2066899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2067899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2068899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2069899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2070a30f8f8cSSatish Balay 2071a30f8f8cSSatish Balay /* hash table stuff */ 2072a30f8f8cSSatish Balay a->ht = 0; 2073a30f8f8cSSatish Balay a->hd = 0; 2074a30f8f8cSSatish Balay a->ht_size = 0; 2075a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2076a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2077a30f8f8cSSatish Balay a->ht_total_ct = 0; 2078a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2079a30f8f8cSSatish Balay 2080899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 20817adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 2082d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2083a30f8f8cSSatish Balay if (oldmat->colmap) { 2084a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2085a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2086a30f8f8cSSatish Balay #else 20871302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 208852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20891302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2090a30f8f8cSSatish Balay #endif 2091a30f8f8cSSatish Balay } else a->colmap = 0; 2092387bc808SHong Zhang 2093a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20941302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 209552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20961302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2097a30f8f8cSSatish Balay } else a->garray = 0; 2098a30f8f8cSSatish Balay 2099a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 210052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2101a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 210252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 210382327fa8SHong Zhang 210482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 210552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 210682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 210752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2108387bc808SHong Zhang 2109387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21101ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2111387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2112387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21131ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21141ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2115387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21161ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 211752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 211952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 212152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2122387bc808SHong Zhang 2123387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2124387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2125387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 212652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 212782327fa8SHong Zhang 2128a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 212952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2130a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 213152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21327adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2133a30f8f8cSSatish Balay *newmat = mat; 2134a30f8f8cSSatish Balay PetscFunctionReturn(0); 2135a30f8f8cSSatish Balay } 2136a30f8f8cSSatish Balay 2137a30f8f8cSSatish Balay #include "petscsys.h" 2138a30f8f8cSSatish Balay 21394a2ae208SSatish Balay #undef __FUNCT__ 21404a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2141a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2142a30f8f8cSSatish Balay { 2143a30f8f8cSSatish Balay Mat A; 21446849ba73SBarry Smith PetscErrorCode ierr; 214513f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 214687828ca2SBarry Smith PetscScalar *vals,*buf; 2147a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2148a30f8f8cSSatish Balay MPI_Status status; 2149e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 215013f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21512fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21521302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21531302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21541302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 215513f74950SBarry Smith int fd; 2156a30f8f8cSSatish Balay 2157a30f8f8cSSatish Balay PetscFunctionBegin; 215877925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21598c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21608c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2161a30f8f8cSSatish Balay 2162a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay if (!rank) { 2165b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2167552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2168a30f8f8cSSatish Balay if (header[3] < 0) { 216929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2170a30f8f8cSSatish Balay } 2171a30f8f8cSSatish Balay } 2172a30f8f8cSSatish Balay 2173a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2175a30f8f8cSSatish Balay 217629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay /* 2179a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2180a30f8f8cSSatish Balay divisible by the blocksize 2181a30f8f8cSSatish Balay */ 2182a30f8f8cSSatish Balay Mbs = M/bs; 2183a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2184a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2185a30f8f8cSSatish Balay else Mbs++; 2186a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21871e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2188a30f8f8cSSatish Balay } 2189a30f8f8cSSatish Balay 2190a30f8f8cSSatish Balay /* determine ownership of all rows */ 2191a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2192a30f8f8cSSatish Balay m = mbs*bs; 2193a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay browners = rowners + size + 1; 2195e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2196e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay rowners[0] = 0; 2198a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2199a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2200a30f8f8cSSatish Balay rstart = rowners[rank]; 2201a30f8f8cSSatish Balay rend = rowners[rank+1]; 2202a30f8f8cSSatish Balay 2203a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22042fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay if (!rank) { 22061302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2209a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2211a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay } else { 2214a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay } 2216a30f8f8cSSatish Balay 22170222edb1SHong Zhang if (!rank) { /* procs[0] */ 2218a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22191302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22201302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2221a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2222a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2223a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2224a30f8f8cSSatish Balay } 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay 2228a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2229a30f8f8cSSatish Balay maxnz = 0; 2230a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2231a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2232a30f8f8cSSatish Balay } 22331302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2234a30f8f8cSSatish Balay 2235a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2236a30f8f8cSSatish Balay nz = procsnz[0]; 22371302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2238a30f8f8cSSatish Balay mycols = ibuf; 2239a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2240a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2241a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2242a30f8f8cSSatish Balay 2243a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2244a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2245a30f8f8cSSatish Balay nz = procsnz[i]; 2246a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2247a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay } 2249a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2250a30f8f8cSSatish Balay if (size != 1) { 2251a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2252a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2254a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay } 2256a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22570222edb1SHong Zhang } else { /* procs[i], i>0 */ 2258a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2259a30f8f8cSSatish Balay nz = 0; 2260a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2261a30f8f8cSSatish Balay nz += locrowlens[i]; 2262a30f8f8cSSatish Balay } 22631302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2264a30f8f8cSSatish Balay mycols = ibuf; 2265a30f8f8cSSatish Balay /* receive message of column indices*/ 2266a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2267a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 226829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2269a30f8f8cSSatish Balay } 2270a30f8f8cSSatish Balay 2271a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22721302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2273a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22741302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22751302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2276a30f8f8cSSatish Balay masked1 = mask + Mbs; 2277a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2278a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2279a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2280a30f8f8cSSatish Balay dcount = 0; 2281a30f8f8cSSatish Balay odcount = 0; 2282a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2283a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2284a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22850222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2286a30f8f8cSSatish Balay if (!mask[tmp]) { 2287a30f8f8cSSatish Balay mask[tmp] = 1; 22880222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22890222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2290a30f8f8cSSatish Balay } 2291a30f8f8cSSatish Balay } 2292a30f8f8cSSatish Balay rowcount++; 2293a30f8f8cSSatish Balay } 2294a30f8f8cSSatish Balay 22950222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22960222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2297a30f8f8cSSatish Balay 2298a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2299a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2300a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2301a30f8f8cSSatish Balay } 2302a30f8f8cSSatish Balay 2303a30f8f8cSSatish Balay /* create our matrix */ 2304f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2305f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 230622191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 230717fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 230822191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2309a30f8f8cSSatish Balay 2310a30f8f8cSSatish Balay if (!rank) { 231187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2312a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2313a30f8f8cSSatish Balay nz = procsnz[0]; 2314a30f8f8cSSatish Balay vals = buf; 2315a30f8f8cSSatish Balay mycols = ibuf; 2316a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2317a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2318a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay /* insert into matrix */ 2321a30f8f8cSSatish Balay jj = rstart*bs; 2322a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23237e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2324a30f8f8cSSatish Balay mycols += locrowlens[i]; 2325a30f8f8cSSatish Balay vals += locrowlens[i]; 2326a30f8f8cSSatish Balay jj++; 2327a30f8f8cSSatish Balay } 23287e06b45fSHong Zhang 2329a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2330a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2331a30f8f8cSSatish Balay nz = procsnz[i]; 2332a30f8f8cSSatish Balay vals = buf; 2333a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23347adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2335a30f8f8cSSatish Balay } 2336a30f8f8cSSatish Balay /* the last proc */ 2337a30f8f8cSSatish Balay if (size != 1){ 2338a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2339a30f8f8cSSatish Balay vals = buf; 2340a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23427adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2343a30f8f8cSSatish Balay } 2344a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23457e06b45fSHong Zhang 2346a30f8f8cSSatish Balay } else { 2347a30f8f8cSSatish Balay /* receive numeric values */ 234887828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2349a30f8f8cSSatish Balay 2350a30f8f8cSSatish Balay /* receive message of values*/ 2351a30f8f8cSSatish Balay vals = buf; 2352a30f8f8cSSatish Balay mycols = ibuf; 23537adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2354a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 235529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2356a30f8f8cSSatish Balay 2357a30f8f8cSSatish Balay /* insert into matrix */ 2358a30f8f8cSSatish Balay jj = rstart*bs; 2359a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2360a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay mycols += locrowlens[i]; 2362a30f8f8cSSatish Balay vals += locrowlens[i]; 2363a30f8f8cSSatish Balay jj++; 2364a30f8f8cSSatish Balay } 2365a30f8f8cSSatish Balay } 23667e06b45fSHong Zhang 2367a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2368a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2370a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2372a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2373a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2374a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 237522191285SKris Buschelman *newmat = A; 2376a30f8f8cSSatish Balay PetscFunctionReturn(0); 2377a30f8f8cSSatish Balay } 2378a30f8f8cSSatish Balay 23794a2ae208SSatish Balay #undef __FUNCT__ 23804a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2381dcf5cc72SBarry Smith /*XXXXX@ 2382a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2383a30f8f8cSSatish Balay 2384a30f8f8cSSatish Balay Input Parameters: 2385a30f8f8cSSatish Balay . mat - the matrix 2386a30f8f8cSSatish Balay . fact - factor 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay Collective on Mat 2389a30f8f8cSSatish Balay 2390a30f8f8cSSatish Balay Level: advanced 2391a30f8f8cSSatish Balay 2392a30f8f8cSSatish Balay Notes: 2393a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2394a30f8f8cSSatish Balay 2395a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2396a30f8f8cSSatish Balay 2397a30f8f8cSSatish Balay .seealso: MatSetOption() 2398dcf5cc72SBarry Smith @XXXXX*/ 2399dcf5cc72SBarry Smith 240024d5174aSHong Zhang 24014a2ae208SSatish Balay #undef __FUNCT__ 2402985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2403985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 240424d5174aSHong Zhang { 240524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2406f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2407ca54ac64SHong Zhang PetscReal atmp; 240887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2409dfbe8321SBarry Smith PetscErrorCode ierr; 24101302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24111302d50aSBarry Smith PetscMPIInt rank,size; 24121302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 241387828ca2SBarry Smith PetscScalar *va; 24148a1c53f2SBarry Smith MatScalar *ba; 2415f4c0e9e4SHong Zhang MPI_Status stat; 241624d5174aSHong Zhang 241724d5174aSHong Zhang PetscFunctionBegin; 2418985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2419985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24201ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2421f4c0e9e4SHong Zhang 24227adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24237adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2424f4c0e9e4SHong Zhang 2425d0f46423SBarry Smith bs = A->rmap->bs; 2426f4c0e9e4SHong Zhang mbs = a->mbs; 2427f4c0e9e4SHong Zhang Mbs = a->Mbs; 2428f4c0e9e4SHong Zhang ba = b->a; 2429f4c0e9e4SHong Zhang bi = b->i; 2430f4c0e9e4SHong Zhang bj = b->j; 2431f4c0e9e4SHong Zhang 2432f4c0e9e4SHong Zhang /* find ownerships */ 2433d0f46423SBarry Smith rowners_bs = A->rmap->range; 2434f4c0e9e4SHong Zhang 2435f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 243682502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2437ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2438f4c0e9e4SHong Zhang 2439f4c0e9e4SHong Zhang /* row_max for B */ 2440b8475685SHong Zhang if (rank != size-1){ 2441f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2442f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2443f4c0e9e4SHong Zhang brow = bs*i; 2444f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2445f4c0e9e4SHong Zhang bcol = bs*(*bj); 2446f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2447ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 244804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2449f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2450f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2451ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2452ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2453f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2454f4c0e9e4SHong Zhang } 2455f4c0e9e4SHong Zhang } 2456f4c0e9e4SHong Zhang bj++; 2457f4c0e9e4SHong Zhang } 2458f4c0e9e4SHong Zhang } 2459f4c0e9e4SHong Zhang 2460f4c0e9e4SHong Zhang /* send values to its owners */ 2461f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2462f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2463ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24647adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2465ca54ac64SHong Zhang } 2466f4c0e9e4SHong Zhang } 2467f4c0e9e4SHong Zhang 2468f4c0e9e4SHong Zhang /* receive values */ 2469ca54ac64SHong Zhang if (rank){ 2470f4c0e9e4SHong Zhang rvalues = work; 2471ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2472f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24737adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2474f4c0e9e4SHong Zhang /* process values */ 2475f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2476ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2477f4c0e9e4SHong Zhang } 2478f4c0e9e4SHong Zhang } 2479ca54ac64SHong Zhang } 2480f4c0e9e4SHong Zhang 24811ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2482ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 248324d5174aSHong Zhang PetscFunctionReturn(0); 248424d5174aSHong Zhang } 24852798e883SHong Zhang 24862798e883SHong Zhang #undef __FUNCT__ 248741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 248841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24892798e883SHong Zhang { 24902798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2491dfbe8321SBarry Smith PetscErrorCode ierr; 2492d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2493fa22f6d0SBarry Smith PetscScalar *x,*b,*ptr,*from; 2494ffe4fb16SHong Zhang Vec bb1; 2495ffe4fb16SHong Zhang 2496ffe4fb16SHong Zhang PetscFunctionBegin; 249777431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2498b75cf396SBarry Smith if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2499ffe4fb16SHong Zhang 2500a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 250141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2502a2b30743SBarry Smith PetscFunctionReturn(0); 2503a2b30743SBarry Smith } 2504a2b30743SBarry Smith 2505ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2506ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 250741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2508ffe4fb16SHong Zhang its--; 2509ffe4fb16SHong Zhang } 2510ffe4fb16SHong Zhang 2511ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2512ffe4fb16SHong Zhang while (its--){ 2513ffe4fb16SHong Zhang 2514ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2515ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2516ffe4fb16SHong Zhang 2517ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25181ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25191ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2520ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25211ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2522ffe4fb16SHong Zhang 2523efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang 2525ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25261ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25271ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2528ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25291ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2530ffe4fb16SHong Zhang 2531ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2532fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2533ffe4fb16SHong Zhang 2534ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25351ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25361ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2537ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2538ffe4fb16SHong Zhang 2539ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2540ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2541ffe4fb16SHong Zhang 2542ffe4fb16SHong Zhang /* local diagonal sweep */ 254341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2544ffe4fb16SHong Zhang } 2545ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2546fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 254741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2548fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 254941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2550fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2551fa22f6d0SBarry Smith Vec xx1; 2552fa22f6d0SBarry Smith PetscTruth hasop; 255320f1ed55SBarry Smith const PetscScalar *diag; 2554887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 255520f1ed55SBarry Smith PetscInt i,n; 2556fa22f6d0SBarry Smith 2557fa22f6d0SBarry Smith if (!mat->xx1) { 2558fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2559fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2560fa22f6d0SBarry Smith } 2561fa22f6d0SBarry Smith xx1 = mat->xx1; 2562fa22f6d0SBarry Smith bb1 = mat->bb1; 2563fa22f6d0SBarry Smith 256441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2565fa22f6d0SBarry Smith 2566fa22f6d0SBarry Smith if (!mat->diag) { 2567effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2568fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2569fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2570fa22f6d0SBarry Smith } 2571fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2572fa22f6d0SBarry Smith 2573fa22f6d0SBarry Smith if (hasop) { 2574fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2575887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 257620f1ed55SBarry Smith } else { 257720f1ed55SBarry Smith /* 257820f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 257920f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2580887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 258120f1ed55SBarry Smith */ 258220f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 258320f1ed55SBarry Smith ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 258420f1ed55SBarry Smith ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 258520f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 258620f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2587887ee2caSBarry Smith if (omega == 1.0) { 258820f1ed55SBarry Smith for (i=0; i<n; i++) { 258920f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 259020f1ed55SBarry Smith } 259120f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2592887ee2caSBarry Smith } else { 2593887ee2caSBarry Smith for (i=0; i<n; i++) { 2594887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2595887ee2caSBarry Smith } 2596887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2597887ee2caSBarry Smith } 259820f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 259920f1ed55SBarry Smith ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 260020f1ed55SBarry Smith ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 260120f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 260220f1ed55SBarry Smith } 2603fa22f6d0SBarry Smith 2604fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2605fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2606fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2607fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2608fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2609fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2610fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2611fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2612fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2613fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2614effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2615fa22f6d0SBarry Smith 2616fa22f6d0SBarry Smith /* local sweep */ 261741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2618fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2619ffe4fb16SHong Zhang } else { 2620ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2621ffe4fb16SHong Zhang } 2622ffe4fb16SHong Zhang PetscFunctionReturn(0); 2623ffe4fb16SHong Zhang } 2624ffe4fb16SHong Zhang 2625ffe4fb16SHong Zhang #undef __FUNCT__ 262641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 262741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2628ffe4fb16SHong Zhang { 2629ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2630dfbe8321SBarry Smith PetscErrorCode ierr; 26312798e883SHong Zhang Vec lvec1,bb1; 26322798e883SHong Zhang 26332798e883SHong Zhang PetscFunctionBegin; 263477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2635b75cf396SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26362798e883SHong Zhang 2637c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26382798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 263941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26402798e883SHong Zhang its--; 26412798e883SHong Zhang } 26422798e883SHong Zhang 26432798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26442798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26452798e883SHong Zhang while (its--){ 2646ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26472798e883SHong Zhang 26482798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26492798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2650efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26512798e883SHong Zhang 2652ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26532798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2654ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26552798e883SHong Zhang 26562798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2657efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26582798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26592798e883SHong Zhang 2660ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26612798e883SHong Zhang 2662c14dc6b6SHong Zhang /* diagonal sweep */ 266341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26642798e883SHong Zhang } 26652798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26662798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2667c14dc6b6SHong Zhang } else { 2668c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2669c14dc6b6SHong Zhang } 26702798e883SHong Zhang PetscFunctionReturn(0); 26712798e883SHong Zhang } 26722798e883SHong Zhang 2673