1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237a30f8f8cSSatish Balay a_noinsert:; \ 238a30f8f8cSSatish Balay ailen[brow] = nrow; \ 239a8f51744SPierre Jolivet } while (0) 240e5e170daSBarry Smith 241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 242a8f51744SPierre Jolivet do { \ 243a30f8f8cSSatish Balay brow = row / bs; \ 2449371c9d4SSatish Balay rp = bj + bi[brow]; \ 2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2469371c9d4SSatish Balay rmax = bimax[brow]; \ 2479371c9d4SSatish Balay nrow = bilen[brow]; \ 248a30f8f8cSSatish Balay bcol = col / bs; \ 2499371c9d4SSatish Balay ridx = row % bs; \ 2509371c9d4SSatish Balay cidx = col % bs; \ 2519371c9d4SSatish Balay low = 0; \ 2529371c9d4SSatish Balay high = nrow; \ 253a30f8f8cSSatish Balay while (high - low > 3) { \ 254a30f8f8cSSatish Balay t = (low + high) / 2; \ 255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 256a30f8f8cSSatish Balay else low = t; \ 257a30f8f8cSSatish Balay } \ 258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 263a30f8f8cSSatish Balay else *bap = value; \ 264a30f8f8cSSatish Balay goto b_noinsert; \ 265a30f8f8cSSatish Balay } \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 270a30f8f8cSSatish Balay N = nrow++ - 1; \ 271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 275a30f8f8cSSatish Balay rp[_i] = bcol; \ 276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 277a30f8f8cSSatish Balay b_noinsert:; \ 278a30f8f8cSSatish Balay bilen[brow] = nrow; \ 279a8f51744SPierre Jolivet } while (0) 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 283a30f8f8cSSatish Balay */ 28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 285d71ae5a4SJacob Faibussowitsch { 286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 287a30f8f8cSSatish Balay MatScalar value; 288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2891302d50aSBarry Smith PetscInt i, j, row, col; 290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 293a30f8f8cSSatish Balay 294a30f8f8cSSatish Balay /* Some Variables required in the macro */ 295a30f8f8cSSatish Balay Mat A = baij->A; 296*57508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 298a30f8f8cSSatish Balay MatScalar *aa = a->a; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay Mat B = baij->B; 301*57508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 303a30f8f8cSSatish Balay MatScalar *ba = b->a; 304a30f8f8cSSatish Balay 3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 307a30f8f8cSSatish Balay MatScalar *ap, *bap; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay /* for stash */ 3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3110298fd71SBarry Smith MatScalar *v_loc = NULL; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314a30f8f8cSSatish Balay if (!baij->donotstash) { 31559ffdab8SBarry Smith if (n > baij->n_loc) { 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32026fbe8dcSKarl Rupp 32159ffdab8SBarry Smith baij->n_loc = n; 32259ffdab8SBarry Smith } 32359ffdab8SBarry Smith in_loc = baij->in_loc; 32459ffdab8SBarry Smith v_loc = baij->v_loc; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay 327a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 328a30f8f8cSSatish Balay if (im[i] < 0) continue; 3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 332a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33401b2bd88SHong Zhang if (a->ignore_ltriangular) { 33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33626fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33701b2bd88SHong Zhang } 338a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 339a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3409371c9d4SSatish Balay brow = row / bs; 3419371c9d4SSatish Balay bcol = col / bs; 342a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 343db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 344db4deed7SKarl Rupp else value = v[i + j * m]; 345d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3469566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 347f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 348f7d195e4SLawrence Mitchell continue; 349f7d195e4SLawrence Mitchell } else { 350f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 351f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 352a30f8f8cSSatish Balay if (mat->was_assembled) { 35348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 354a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 355eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35671730473SSatish Balay col = col - 1; 357a30f8f8cSSatish Balay #else 35871730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 359a30f8f8cSSatish Balay #endif 360f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3619566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 362a30f8f8cSSatish Balay col = in[j]; 363a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 364a30f8f8cSSatish Balay B = baij->B; 365*57508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 3669371c9d4SSatish Balay bimax = b->imax; 3679371c9d4SSatish Balay bi = b->i; 3689371c9d4SSatish Balay bilen = b->ilen; 3699371c9d4SSatish Balay bj = b->j; 370a30f8f8cSSatish Balay ba = b->a; 37171730473SSatish Balay } else col += in[j] % bs; 372a30f8f8cSSatish Balay } else col = in[j]; 373db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 374db4deed7SKarl Rupp else value = v[i + j * m]; 375d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3769566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } 379a30f8f8cSSatish Balay } else { /* off processor entry */ 3805f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 381a30f8f8cSSatish Balay if (!baij->donotstash) { 3825080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 383a30f8f8cSSatish Balay n_loc = 0; 384a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 385f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 386a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 387a30f8f8cSSatish Balay if (roworiented) { 388a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 389a30f8f8cSSatish Balay } else { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay n_loc++; 393a30f8f8cSSatish Balay } 3949566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 3983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay 401d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 402d71ae5a4SJacob Faibussowitsch { 40336bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40436bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40536bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40636bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40736bd2089SBarry Smith PetscBool roworiented = a->roworiented; 40836bd2089SBarry Smith const PetscScalar *value = v; 40936bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41036bd2089SBarry Smith 41136bd2089SBarry Smith PetscFunctionBegin; 41236bd2089SBarry Smith if (col < row) { 4133ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp = aj + ai[row]; 41736bd2089SBarry Smith ap = aa + bs2 * ai[row]; 41836bd2089SBarry Smith rmax = imax[row]; 41936bd2089SBarry Smith nrow = ailen[row]; 42036bd2089SBarry Smith value = v; 42136bd2089SBarry Smith low = 0; 42236bd2089SBarry Smith high = nrow; 42336bd2089SBarry Smith 42436bd2089SBarry Smith while (high - low > 7) { 42536bd2089SBarry Smith t = (low + high) / 2; 42636bd2089SBarry Smith if (rp[t] > col) high = t; 42736bd2089SBarry Smith else low = t; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith for (i = low; i < high; i++) { 43036bd2089SBarry Smith if (rp[i] > col) break; 43136bd2089SBarry Smith if (rp[i] == col) { 43236bd2089SBarry Smith bap = ap + bs2 * i; 43336bd2089SBarry Smith if (roworiented) { 43436bd2089SBarry Smith if (is == ADD_VALUES) { 43536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 436ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43736bd2089SBarry Smith } 43836bd2089SBarry Smith } else { 43936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 440ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44136bd2089SBarry Smith } 44236bd2089SBarry Smith } 44336bd2089SBarry Smith } else { 44436bd2089SBarry Smith if (is == ADD_VALUES) { 44536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 446ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44736bd2089SBarry Smith } 44836bd2089SBarry Smith } else { 44936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 450ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } 45336bd2089SBarry Smith } 45436bd2089SBarry Smith goto noinsert2; 45536bd2089SBarry Smith } 45636bd2089SBarry Smith } 45736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4585f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 45936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4609371c9d4SSatish Balay N = nrow++ - 1; 4619371c9d4SSatish Balay high++; 46236bd2089SBarry Smith /* shift up all the later entries in this row */ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46536bd2089SBarry Smith rp[i] = col; 46636bd2089SBarry Smith bap = ap + bs2 * i; 46736bd2089SBarry Smith if (roworiented) { 46836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 469ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } else { 47236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 473ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith noinsert2:; 47736bd2089SBarry Smith ailen[row] = nrow; 4783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47936bd2089SBarry Smith } 48036bd2089SBarry Smith 48136bd2089SBarry Smith /* 48236bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48336bd2089SBarry Smith */ 484d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 485d71ae5a4SJacob Faibussowitsch { 48636bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48736bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 48836bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 48936bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49036bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49136bd2089SBarry Smith const PetscScalar *value = v; 49236bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49336bd2089SBarry Smith 49436bd2089SBarry Smith PetscFunctionBegin; 49536bd2089SBarry Smith rp = aj + ai[row]; 49636bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49736bd2089SBarry Smith rmax = imax[row]; 49836bd2089SBarry Smith nrow = ailen[row]; 49936bd2089SBarry Smith low = 0; 50036bd2089SBarry Smith high = nrow; 50136bd2089SBarry Smith value = v; 50236bd2089SBarry Smith while (high - low > 7) { 50336bd2089SBarry Smith t = (low + high) / 2; 50436bd2089SBarry Smith if (rp[t] > col) high = t; 50536bd2089SBarry Smith else low = t; 50636bd2089SBarry Smith } 50736bd2089SBarry Smith for (i = low; i < high; i++) { 50836bd2089SBarry Smith if (rp[i] > col) break; 50936bd2089SBarry Smith if (rp[i] == col) { 51036bd2089SBarry Smith bap = ap + bs2 * i; 51136bd2089SBarry Smith if (roworiented) { 51236bd2089SBarry Smith if (is == ADD_VALUES) { 51336bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 514ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51536bd2089SBarry Smith } 51636bd2089SBarry Smith } else { 51736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 518ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 51936bd2089SBarry Smith } 52036bd2089SBarry Smith } 52136bd2089SBarry Smith } else { 52236bd2089SBarry Smith if (is == ADD_VALUES) { 52336bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 524ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52536bd2089SBarry Smith bap += bs; 52636bd2089SBarry Smith } 52736bd2089SBarry Smith } else { 52836bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 529ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53036bd2089SBarry Smith bap += bs; 53136bd2089SBarry Smith } 53236bd2089SBarry Smith } 53336bd2089SBarry Smith } 53436bd2089SBarry Smith goto noinsert2; 53536bd2089SBarry Smith } 53636bd2089SBarry Smith } 53736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5385f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 53936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5409371c9d4SSatish Balay N = nrow++ - 1; 5419371c9d4SSatish Balay high++; 54236bd2089SBarry Smith /* shift up all the later entries in this row */ 5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5449566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54536bd2089SBarry Smith rp[i] = col; 54636bd2089SBarry Smith bap = ap + bs2 * i; 54736bd2089SBarry Smith if (roworiented) { 54836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 549ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55036bd2089SBarry Smith } 55136bd2089SBarry Smith } else { 55236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 553ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55436bd2089SBarry Smith } 55536bd2089SBarry Smith } 55636bd2089SBarry Smith noinsert2:; 55736bd2089SBarry Smith ailen[row] = nrow; 5583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55936bd2089SBarry Smith } 56036bd2089SBarry Smith 56136bd2089SBarry Smith /* 56236bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56336bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56436bd2089SBarry Smith */ 56566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 566d71ae5a4SJacob Faibussowitsch { 5670880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 568f15d580aSBarry Smith const MatScalar *value; 569f15d580aSBarry Smith MatScalar *barray = baij->barray; 570ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 571899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 572476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 573476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5740880e062SHong Zhang 575a30f8f8cSSatish Balay PetscFunctionBegin; 5760880e062SHong Zhang if (!barray) { 5779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5780880e062SHong Zhang baij->barray = barray; 5790880e062SHong Zhang } 5800880e062SHong Zhang 5810880e062SHong Zhang if (roworiented) { 5820880e062SHong Zhang stepval = (n - 1) * bs; 5830880e062SHong Zhang } else { 5840880e062SHong Zhang stepval = (m - 1) * bs; 5850880e062SHong Zhang } 5860880e062SHong Zhang for (i = 0; i < m; i++) { 5870880e062SHong Zhang if (im[i] < 0) continue; 5886bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5890880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5900880e062SHong Zhang row = im[i] - rstart; 5910880e062SHong Zhang for (j = 0; j < n; j++) { 592f3f98c53SJed Brown if (im[i] > in[j]) { 593f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 594e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 595f3f98c53SJed Brown } 5960880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5970880e062SHong Zhang if ((roworiented) && (n == 1)) { 598f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5990880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6010880e062SHong Zhang } else { /* Here a copy is required */ 6020880e062SHong Zhang if (roworiented) { 6030880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6040880e062SHong Zhang } else { 6050880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6060880e062SHong Zhang } 6070880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 608ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6090880e062SHong Zhang } 6100880e062SHong Zhang barray -= bs2; 6110880e062SHong Zhang } 6120880e062SHong Zhang 6130880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6140880e062SHong Zhang col = in[j] - cstart; 6159566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 616f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 617f7d195e4SLawrence Mitchell continue; 618f7d195e4SLawrence Mitchell } else { 619f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6200880e062SHong Zhang if (mat->was_assembled) { 62148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6220880e062SHong Zhang 6230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 624eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 625b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 6260880e062SHong Zhang #else 627b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 6280880e062SHong Zhang #endif 629f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6309566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6310880e062SHong Zhang col = in[j]; 6320880e062SHong Zhang } 63326fbe8dcSKarl Rupp } else col = in[j]; 6349566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6350880e062SHong Zhang } 6360880e062SHong Zhang } 6370880e062SHong Zhang } else { 6385f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6390880e062SHong Zhang if (!baij->donotstash) { 6400880e062SHong Zhang if (roworiented) { 6419566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6420880e062SHong Zhang } else { 6439566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6440880e062SHong Zhang } 6450880e062SHong Zhang } 6460880e062SHong Zhang } 6470880e062SHong Zhang } 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 65166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 652d71ae5a4SJacob Faibussowitsch { 653f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 654d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 655d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay PetscFunctionBegin; 658a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 65954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 661a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 662a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 663a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 66454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 666a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 667a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6689566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 669a30f8f8cSSatish Balay } else { 67048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 671a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 672eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 673a30f8f8cSSatish Balay data--; 674a30f8f8cSSatish Balay #else 675a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 676a30f8f8cSSatish Balay #endif 677a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 678a30f8f8cSSatish Balay else { 679a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6809566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 684f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 685a30f8f8cSSatish Balay } 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay 68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 690d71ae5a4SJacob Faibussowitsch { 691a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 692a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 693a30f8f8cSSatish Balay 694a30f8f8cSSatish Balay PetscFunctionBegin; 695a30f8f8cSSatish Balay if (baij->size == 1) { 6969566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 697a30f8f8cSSatish Balay } else { 698a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7019371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7029371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7039566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7049371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7059371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 706462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7078f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7090b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7100b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7110b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 7120b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 713899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 714d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7150b8dc8d2SHong Zhang MatScalar *v; 7166497c311SBarry Smith PetscMPIInt iN; 7170b8dc8d2SHong Zhang 7189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 7199566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7200b8dc8d2SHong Zhang /* Amat */ 7219371c9d4SSatish Balay v = amat->a; 7229371c9d4SSatish Balay jj = amat->j; 7230b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7240b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7250b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7260b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7279371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7289371c9d4SSatish Balay jj++; 7290b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7300b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7319371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7329371c9d4SSatish Balay v++; 7330b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7340b8dc8d2SHong Zhang /* non-diagonal block */ 7350b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7360b8dc8d2SHong Zhang } 7370b8dc8d2SHong Zhang } 7380b8dc8d2SHong Zhang } 7399566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7400b8dc8d2SHong Zhang } 7410b8dc8d2SHong Zhang /* Bmat */ 7429371c9d4SSatish Balay v = bmat->a; 7439371c9d4SSatish Balay jj = bmat->j; 7440b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7450b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7460b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7470b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7489371c9d4SSatish Balay gcol = bs * garray[*jj]; 7499371c9d4SSatish Balay jj++; 7500b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7510b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7529371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7539371c9d4SSatish Balay v++; 7540b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7550b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7560b8dc8d2SHong Zhang } 7570b8dc8d2SHong Zhang } 7580b8dc8d2SHong Zhang } 7599566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7600b8dc8d2SHong Zhang } 7616497c311SBarry Smith PetscCall(PetscMPIIntCast(mat->cmap->N, &iN)); 762462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(rsum, rsum2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7630b8dc8d2SHong Zhang *norm = 0.0; 764d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7650b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7660b8dc8d2SHong Zhang } 7679566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 768f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 769a30f8f8cSSatish Balay } 7703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay 77366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 774d71ae5a4SJacob Faibussowitsch { 775a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7761302d50aSBarry Smith PetscInt nstash, reallocs; 777a30f8f8cSSatish Balay 778a30f8f8cSSatish Balay PetscFunctionBegin; 7793ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 780a30f8f8cSSatish Balay 7819566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7829566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7839566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7849566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7859566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 788a30f8f8cSSatish Balay } 789a30f8f8cSSatish Balay 79066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 791d71ae5a4SJacob Faibussowitsch { 792a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 793a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 79413f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 795e44c0bd4SBarry Smith PetscInt *row, *col; 796ace3abfcSBarry Smith PetscBool other_disassembled; 79713f74950SBarry Smith PetscMPIInt n; 798ace3abfcSBarry Smith PetscBool r1, r2, r3; 799a30f8f8cSSatish Balay MatScalar *val; 800a30f8f8cSSatish Balay 80191c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 802a30f8f8cSSatish Balay PetscFunctionBegin; 8034cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 804a30f8f8cSSatish Balay while (1) { 8059566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 806a30f8f8cSSatish Balay if (!flg) break; 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay for (i = 0; i < n;) { 809a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 81026fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 81126fbe8dcSKarl Rupp if (row[j] != rstart) break; 81226fbe8dcSKarl Rupp } 813a30f8f8cSSatish Balay if (j < n) ncols = j - i; 814a30f8f8cSSatish Balay else ncols = n - i; 815a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8169566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 817a30f8f8cSSatish Balay i = j; 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay } 8209566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 821a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8225e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 823a30f8f8cSSatish Balay restore the original flags */ 824a30f8f8cSSatish Balay r1 = baij->roworiented; 825a30f8f8cSSatish Balay r2 = a->roworiented; 82691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 82726fbe8dcSKarl Rupp 828a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 829a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 83026fbe8dcSKarl Rupp 83191c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 832a30f8f8cSSatish Balay while (1) { 8339566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 834a30f8f8cSSatish Balay if (!flg) break; 835a30f8f8cSSatish Balay 836a30f8f8cSSatish Balay for (i = 0; i < n;) { 837a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 83826fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 83926fbe8dcSKarl Rupp if (row[j] != rstart) break; 84026fbe8dcSKarl Rupp } 841a30f8f8cSSatish Balay if (j < n) ncols = j - i; 842a30f8f8cSSatish Balay else ncols = n - i; 8439566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 844a30f8f8cSSatish Balay i = j; 845a30f8f8cSSatish Balay } 846a30f8f8cSSatish Balay } 8479566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 84826fbe8dcSKarl Rupp 849a30f8f8cSSatish Balay baij->roworiented = r1; 850a30f8f8cSSatish Balay a->roworiented = r2; 85126fbe8dcSKarl Rupp 85291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 853a30f8f8cSSatish Balay } 854a30f8f8cSSatish Balay 8559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 857a30f8f8cSSatish Balay 858a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8596aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 860a30f8f8cSSatish Balay /* 861a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 862a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 863a30f8f8cSSatish Balay */ 864a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 865462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 86648a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 867a30f8f8cSSatish Balay } 868a30f8f8cSSatish Balay 8699371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 872a30f8f8cSSatish Balay 8739566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 87426fbe8dcSKarl Rupp 875f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8764f9cfa9eSBarry Smith 8774f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 878f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 879e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 880462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 881e56f5c9eSBarry Smith } 8823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 883a30f8f8cSSatish Balay } 884a30f8f8cSSatish Balay 885dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8869804daf3SBarry Smith #include <petscdraw.h> 887d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 888d71ae5a4SJacob Faibussowitsch { 889a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 890d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8917da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 892ace3abfcSBarry Smith PetscBool iascii, isdraw; 893b0a32e0cSBarry Smith PetscViewer sviewer; 894f3ef73ceSBarry Smith PetscViewerFormat format; 895a30f8f8cSSatish Balay 896a30f8f8cSSatish Balay PetscFunctionBegin; 8979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 89932077d6dSBarry Smith if (iascii) { 9009566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 901456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 902a30f8f8cSSatish Balay MatInfo info; 9039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9049566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9069371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9079371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9129566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9159566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 920c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay } 924a30f8f8cSSatish Balay 925a30f8f8cSSatish Balay if (isdraw) { 926b0a32e0cSBarry Smith PetscDraw draw; 927ace3abfcSBarry Smith PetscBool isnull; 9289566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9299566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9303ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 931a30f8f8cSSatish Balay } 932a30f8f8cSSatish Balay 9337da1fb6eSBarry Smith { 934a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 935a30f8f8cSSatish Balay Mat A; 93665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 93765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 938d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 939a30f8f8cSSatish Balay MatScalar *a; 9403e219373SBarry Smith const char *matname; 941a30f8f8cSSatish Balay 942f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9439566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 944dd400576SPatrick Sanan if (rank == 0) { 9459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 946a30f8f8cSSatish Balay } else { 9479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 948a30f8f8cSSatish Balay } 9499566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9509566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9519566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 952a30f8f8cSSatish Balay 953a30f8f8cSSatish Balay /* copy over the A part */ 95465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9559371c9d4SSatish Balay ai = Aloc->i; 9569371c9d4SSatish Balay aj = Aloc->j; 9579371c9d4SSatish Balay a = Aloc->a; 9589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 959a30f8f8cSSatish Balay 960a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 961e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 96226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 963a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 964e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 965a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9669566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 96726fbe8dcSKarl Rupp col++; 96826fbe8dcSKarl Rupp a += bs; 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay } 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay /* copy over the B part */ 97365d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9749371c9d4SSatish Balay ai = Bloc->i; 9759371c9d4SSatish Balay aj = Bloc->j; 9769371c9d4SSatish Balay a = Bloc->a; 977a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 978e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97926fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 980a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 981a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 982a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9839566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 98426fbe8dcSKarl Rupp col++; 98526fbe8dcSKarl Rupp a += bs; 986a30f8f8cSSatish Balay } 987a30f8f8cSSatish Balay } 988a30f8f8cSSatish Balay } 9899566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 992a30f8f8cSSatish Balay /* 993a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 994b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 995a30f8f8cSSatish Balay */ 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 99723a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 998dd400576SPatrick Sanan if (rank == 0) { 999f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 1000f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 1001a30f8f8cSSatish Balay } 10029566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1004a30f8f8cSSatish Balay } 10053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1006a30f8f8cSSatish Balay } 1007a30f8f8cSSatish Balay 1008618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1009618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1010d1654148SHong Zhang 101166976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1012d71ae5a4SJacob Faibussowitsch { 1013ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1014a30f8f8cSSatish Balay 1015a30f8f8cSSatish Balay PetscFunctionBegin; 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1020d1654148SHong Zhang if (iascii || isdraw || issocket) { 10219566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10221baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1024a30f8f8cSSatish Balay } 1025a30f8f8cSSatish Balay 1026789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1027789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1028d71ae5a4SJacob Faibussowitsch { 1029547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1030eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10316de40e93SBarry Smith PetscScalar *from; 10326de40e93SBarry Smith const PetscScalar *x; 1033547795f9SHong Zhang 1034547795f9SHong Zhang PetscFunctionBegin; 1035547795f9SHong Zhang /* diagonal part */ 10369566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1037629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1038629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1039629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1040547795f9SHong Zhang 1041547795f9SHong Zhang /* subdiagonal part */ 10425f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1044547795f9SHong Zhang 1045547795f9SHong Zhang /* copy x into the vec slvec0 */ 10469566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10479566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1048547795f9SHong Zhang 10499566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1052547795f9SHong Zhang 10539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1055547795f9SHong Zhang /* supperdiagonal part */ 10569566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1058547795f9SHong Zhang } 1059789afff4SPierre Jolivet #endif 1060547795f9SHong Zhang 106166976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1062d71ae5a4SJacob Faibussowitsch { 1063a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1064eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1065d9ca1df4SBarry Smith PetscScalar *from; 1066d9ca1df4SBarry Smith const PetscScalar *x; 1067a9d4b620SHong Zhang 1068a9d4b620SHong Zhang PetscFunctionBegin; 1069a9d4b620SHong Zhang /* diagonal part */ 10709566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1071629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1072629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1073629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1074a9d4b620SHong Zhang 1075a9d4b620SHong Zhang /* subdiagonal part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1077fc165ae2SBarry Smith 1078a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10799566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1081a9d4b620SHong Zhang 10829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1085fc165ae2SBarry Smith 10869566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10879566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1088a9d4b620SHong Zhang /* supperdiagonal part */ 10899566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1091a9d4b620SHong Zhang } 1092a9d4b620SHong Zhang 109366976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 109466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1095d71ae5a4SJacob Faibussowitsch { 1096eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1097eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1098629a200eSBarry Smith PetscScalar *from; 1099eb1ec7c1SStefano Zampini const PetscScalar *x; 1100eb1ec7c1SStefano Zampini 1101eb1ec7c1SStefano Zampini PetscFunctionBegin; 1102eb1ec7c1SStefano Zampini /* diagonal part */ 11039566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1104629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1105629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1106eb1ec7c1SStefano Zampini 1107eb1ec7c1SStefano Zampini /* subdiagonal part */ 11085f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11099566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1110eb1ec7c1SStefano Zampini 1111eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11129566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11159566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1116eb1ec7c1SStefano Zampini 11179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1120eb1ec7c1SStefano Zampini 1121eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11229566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1124eb1ec7c1SStefano Zampini } 112566976f2fSJacob Faibussowitsch #endif 1126eb1ec7c1SStefano Zampini 112766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1128d71ae5a4SJacob Faibussowitsch { 1129de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1130d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1131629a200eSBarry Smith PetscScalar *from; 1132d9ca1df4SBarry Smith const PetscScalar *x; 1133a9d4b620SHong Zhang 1134a9d4b620SHong Zhang PetscFunctionBegin; 1135a9d4b620SHong Zhang /* diagonal part */ 11369566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1137629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1138629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1139a9d4b620SHong Zhang 1140a9d4b620SHong Zhang /* subdiagonal part */ 11419566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1142a9d4b620SHong Zhang 1143a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11449566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1148a9d4b620SHong Zhang 11499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1152a9d4b620SHong Zhang 1153a9d4b620SHong Zhang /* supperdiagonal part */ 11549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1156a9d4b620SHong Zhang } 1157a9d4b620SHong Zhang 1158a30f8f8cSSatish Balay /* 1159a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1160a30f8f8cSSatish Balay diagonal block 1161a30f8f8cSSatish Balay */ 116266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1163d71ae5a4SJacob Faibussowitsch { 1164a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1165a30f8f8cSSatish Balay 1166a30f8f8cSSatish Balay PetscFunctionBegin; 116708401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11689566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1170a30f8f8cSSatish Balay } 1171a30f8f8cSSatish Balay 117266976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1173d71ae5a4SJacob Faibussowitsch { 1174a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1175a30f8f8cSSatish Balay 1176a30f8f8cSSatish Balay PetscFunctionBegin; 11779566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11789566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1180a30f8f8cSSatish Balay } 1181a30f8f8cSSatish Balay 118266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1183d71ae5a4SJacob Faibussowitsch { 1184d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1185d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1186d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1187d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1188899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1189d0d4cfc2SHong Zhang 1190a30f8f8cSSatish Balay PetscFunctionBegin; 11915f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1192d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1193d0d4cfc2SHong Zhang 1194d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1195d0d4cfc2SHong Zhang /* 1196d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1197d0d4cfc2SHong Zhang */ 1198d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1199d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1200d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1201d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1202d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 120326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1204d0d4cfc2SHong Zhang } 12059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1206d0d4cfc2SHong Zhang } 1207d0d4cfc2SHong Zhang 12085f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1209d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1210d0d4cfc2SHong Zhang 12119371c9d4SSatish Balay pvA = &vworkA; 12129371c9d4SSatish Balay pcA = &cworkA; 12139371c9d4SSatish Balay pvB = &vworkB; 12149371c9d4SSatish Balay pcB = &cworkB; 12159371c9d4SSatish Balay if (!v) { 12169371c9d4SSatish Balay pvA = NULL; 12179371c9d4SSatish Balay pvB = NULL; 12189371c9d4SSatish Balay } 12199371c9d4SSatish Balay if (!idx) { 12209371c9d4SSatish Balay pcA = NULL; 12219371c9d4SSatish Balay if (!v) pcB = NULL; 12229371c9d4SSatish Balay } 12239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12249566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1225d0d4cfc2SHong Zhang nztot = nzA + nzB; 1226d0d4cfc2SHong Zhang 1227d0d4cfc2SHong Zhang cmap = mat->garray; 1228d0d4cfc2SHong Zhang if (v || idx) { 1229d0d4cfc2SHong Zhang if (nztot) { 1230d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1231d0d4cfc2SHong Zhang PetscInt imark = -1; 1232d0d4cfc2SHong Zhang if (v) { 1233d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1234d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1235d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1236d0d4cfc2SHong Zhang else break; 1237d0d4cfc2SHong Zhang } 1238d0d4cfc2SHong Zhang imark = i; 1239d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1240d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang if (idx) { 1243d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1244d0d4cfc2SHong Zhang if (imark > -1) { 1245ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1246d0d4cfc2SHong Zhang } else { 1247d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 124826fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1249d0d4cfc2SHong Zhang else break; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang imark = i; 1252d0d4cfc2SHong Zhang } 1253d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1254d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1255d0d4cfc2SHong Zhang } 1256d0d4cfc2SHong Zhang } else { 1257f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1258f4259b30SLisandro Dalcin if (v) *v = NULL; 1259d0d4cfc2SHong Zhang } 1260d0d4cfc2SHong Zhang } 1261d0d4cfc2SHong Zhang *nz = nztot; 12629566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12639566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1265a30f8f8cSSatish Balay } 1266a30f8f8cSSatish Balay 126766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1268d71ae5a4SJacob Faibussowitsch { 1269a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1270a30f8f8cSSatish Balay 1271a30f8f8cSSatish Balay PetscFunctionBegin; 12725f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1273a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1275a30f8f8cSSatish Balay } 1276a30f8f8cSSatish Balay 127766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1278d71ae5a4SJacob Faibussowitsch { 1279d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1280d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1281d0d4cfc2SHong Zhang 1282d0d4cfc2SHong Zhang PetscFunctionBegin; 1283d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1285d0d4cfc2SHong Zhang } 128666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1287d71ae5a4SJacob Faibussowitsch { 1288d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1289d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1290d0d4cfc2SHong Zhang 1291d0d4cfc2SHong Zhang PetscFunctionBegin; 1292d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 12933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1294d0d4cfc2SHong Zhang } 1295d0d4cfc2SHong Zhang 129666976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1297d71ae5a4SJacob Faibussowitsch { 12985f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12995f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13002726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 13012726fb6dSPierre Jolivet 13029566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13039566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13045f80ce2aSJacob Faibussowitsch } 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13062726fb6dSPierre Jolivet } 13072726fb6dSPierre Jolivet 130866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1309d71ae5a4SJacob Faibussowitsch { 131099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131199cafbc1SBarry Smith 131299cafbc1SBarry Smith PetscFunctionBegin; 13139566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13149566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131699cafbc1SBarry Smith } 131799cafbc1SBarry Smith 131866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1319d71ae5a4SJacob Faibussowitsch { 132099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 132199cafbc1SBarry Smith 132299cafbc1SBarry Smith PetscFunctionBegin; 13239566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13249566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132699cafbc1SBarry Smith } 132799cafbc1SBarry Smith 13287dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 132936032a97SHong Zhang Input: isrow - distributed(parallel), 133036032a97SHong Zhang iscol_local - locally owned (seq) 133136032a97SHong Zhang */ 133266976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1333d71ae5a4SJacob Faibussowitsch { 13348f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13358f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 133636032a97SHong Zhang 133736032a97SHong Zhang PetscFunctionBegin; 133866976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13399566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 134166976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13428f46ffcaSHong Zhang 13439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13449566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13458f46ffcaSHong Zhang 13469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13489566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13499566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13509566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13519566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13528f46ffcaSHong Zhang 13538f46ffcaSHong Zhang nmatch = 0; 13548f46ffcaSHong Zhang k = 0; 13558f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13568f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13578f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13589371c9d4SSatish Balay k = j; 13599371c9d4SSatish Balay nmatch++; 13608f46ffcaSHong Zhang break; 13618f46ffcaSHong Zhang } 13628f46ffcaSHong Zhang } 13638f46ffcaSHong Zhang } 13649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13659566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13669566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13679566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13681098a8e8SHong Zhang if (nmatch < sz1) { 13691098a8e8SHong Zhang *flg = PETSC_FALSE; 13701098a8e8SHong Zhang } else { 13711098a8e8SHong Zhang *flg = PETSC_TRUE; 13721098a8e8SHong Zhang } 13733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13748f46ffcaSHong Zhang } 137536032a97SHong Zhang 137666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1377d71ae5a4SJacob Faibussowitsch { 1378fdfbdca6SPierre Jolivet Mat C[2]; 1379fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1380fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1381fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 138236032a97SHong Zhang 138336032a97SHong Zhang PetscFunctionBegin; 13849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1385fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 138636032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13885f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 138936032a97SHong Zhang } else { 13909566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13919566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1392fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 13938f46ffcaSHong Zhang } 1394fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1395fdfbdca6SPierre Jolivet if (!isequal) { 1396fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1397fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1398fdfbdca6SPierre Jolivet if (!isidentity) { 1399fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1400fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1401fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1402fdfbdca6SPierre Jolivet } else { 1403fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1404fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1405fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1406fdfbdca6SPierre Jolivet } 1407fdfbdca6SPierre Jolivet } 1408fdfbdca6SPierre Jolivet } 14097dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1410fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1411fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14128f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1413fdfbdca6SPierre Jolivet IS intersect; 1414fdfbdca6SPierre Jolivet PetscInt ni; 1415fdfbdca6SPierre Jolivet 1416fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1417fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1418fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1419fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1420fdfbdca6SPierre Jolivet } 1421fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1422fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1423fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1424fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1425fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1426fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1427fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1428fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1429fdfbdca6SPierre Jolivet } 1430fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1431fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1432fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1433fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1434fdfbdca6SPierre Jolivet } 14359566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14378f46ffcaSHong Zhang } 14383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14398f46ffcaSHong Zhang } 14408f46ffcaSHong Zhang 144166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1442d71ae5a4SJacob Faibussowitsch { 1443a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1444a30f8f8cSSatish Balay 1445a30f8f8cSSatish Balay PetscFunctionBegin; 14469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14479566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1449a30f8f8cSSatish Balay } 1450a30f8f8cSSatish Balay 145166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1452d71ae5a4SJacob Faibussowitsch { 1453a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1454a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14553966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1456a30f8f8cSSatish Balay 1457a30f8f8cSSatish Balay PetscFunctionBegin; 1458d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145926fbe8dcSKarl Rupp 14609566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 146126fbe8dcSKarl Rupp 14629371c9d4SSatish Balay isend[0] = info->nz_used; 14639371c9d4SSatish Balay isend[1] = info->nz_allocated; 14649371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14659371c9d4SSatish Balay isend[3] = info->memory; 14669371c9d4SSatish Balay isend[4] = info->mallocs; 146726fbe8dcSKarl Rupp 14689566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 146926fbe8dcSKarl Rupp 14709371c9d4SSatish Balay isend[0] += info->nz_used; 14719371c9d4SSatish Balay isend[1] += info->nz_allocated; 14729371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14739371c9d4SSatish Balay isend[3] += info->memory; 14749371c9d4SSatish Balay isend[4] += info->mallocs; 1475a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1476a30f8f8cSSatish Balay info->nz_used = isend[0]; 1477a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1478a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1479a30f8f8cSSatish Balay info->memory = isend[3]; 1480a30f8f8cSSatish Balay info->mallocs = isend[4]; 1481a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1482462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 148326fbe8dcSKarl Rupp 1484a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1485a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1486a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1487a30f8f8cSSatish Balay info->memory = irecv[3]; 1488a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1489a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1490462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 149126fbe8dcSKarl Rupp 1492a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1493a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1494a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1495a30f8f8cSSatish Balay info->memory = irecv[3]; 1496a30f8f8cSSatish Balay info->mallocs = irecv[4]; 149798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1498a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1499a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1500a30f8f8cSSatish Balay info->factor_mallocs = 0; 15013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1502a30f8f8cSSatish Balay } 1503a30f8f8cSSatish Balay 150466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1505d71ae5a4SJacob Faibussowitsch { 1506a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1507d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1508a30f8f8cSSatish Balay 1509a30f8f8cSSatish Balay PetscFunctionBegin; 1510e98b92d7SKris Buschelman switch (op) { 1511512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1512e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 151328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1514a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1515c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1516e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 151743674050SBarry Smith MatCheckPreallocated(A, 1); 15189566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15199566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1520e98b92d7SKris Buschelman break; 1521e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 152243674050SBarry Smith MatCheckPreallocated(A, 1); 15234e0d8c25SBarry Smith a->roworiented = flg; 152426fbe8dcSKarl Rupp 15259566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15269566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1527e98b92d7SKris Buschelman break; 15288c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1529d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1530d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1531d71ae5a4SJacob Faibussowitsch break; 1532d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1533d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1534d71ae5a4SJacob Faibussowitsch break; 1535d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1536d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1537d71ae5a4SJacob Faibussowitsch break; 1538d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1539d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1540d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15410f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1542eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1543547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1544eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1545eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1546eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1547b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1548eb1ec7c1SStefano Zampini } 15490f2140c7SStefano Zampini #endif 1550eeffb40dSHong Zhang break; 1551ffa07934SHong Zhang case MAT_SPD: 1552d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1553d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1554d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1555eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1556eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1557eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1558eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1559eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1560eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1561eb1ec7c1SStefano Zampini } 1562eb1ec7c1SStefano Zampini #endif 1563eeffb40dSHong Zhang break; 156477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 156543674050SBarry Smith MatCheckPreallocated(A, 1); 15669566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1567eeffb40dSHong Zhang break; 15689a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1569b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15705f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15719566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 157277e54ba9SKris Buschelman break; 1573d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1574d71ae5a4SJacob Faibussowitsch break; 1575d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1576d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1577d71ae5a4SJacob Faibussowitsch break; 1578d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1579d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1580d71ae5a4SJacob Faibussowitsch break; 1581d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1582d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1583d71ae5a4SJacob Faibussowitsch break; 1584d71ae5a4SJacob Faibussowitsch default: 1585d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1586a30f8f8cSSatish Balay } 15873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1588a30f8f8cSSatish Balay } 1589a30f8f8cSSatish Balay 159066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1591d71ae5a4SJacob Faibussowitsch { 1592a30f8f8cSSatish Balay PetscFunctionBegin; 15937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1594cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15959566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1596cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15979566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1598fc4dec0aSBarry Smith } 15993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1600a30f8f8cSSatish Balay } 1601a30f8f8cSSatish Balay 160266976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1603d71ae5a4SJacob Faibussowitsch { 1604a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1605a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 16065e90f9d9SHong Zhang PetscInt nv, m, n; 1607ace3abfcSBarry Smith PetscBool flg; 1608a30f8f8cSSatish Balay 1609a30f8f8cSSatish Balay PetscFunctionBegin; 1610a30f8f8cSSatish Balay if (ll != rr) { 16119566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 16125f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1613a30f8f8cSSatish Balay } 16143ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1615b3bf805bSHong Zhang 16169566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 16175f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1618b3bf805bSHong Zhang 16199566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 16205f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 16215e90f9d9SHong Zhang 16229566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16235e90f9d9SHong Zhang 16245e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1625dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16265e90f9d9SHong Zhang 16275e90f9d9SHong Zhang /* scale the diagonal part */ 1628dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1629a30f8f8cSSatish Balay 16305e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16319566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1632dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1634a30f8f8cSSatish Balay } 1635a30f8f8cSSatish Balay 163666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1637d71ae5a4SJacob Faibussowitsch { 1638f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1639a30f8f8cSSatish Balay 1640a30f8f8cSSatish Balay PetscFunctionBegin; 16419566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1643a30f8f8cSSatish Balay } 1644a30f8f8cSSatish Balay 16456849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1646a30f8f8cSSatish Balay 164766976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1648d71ae5a4SJacob Faibussowitsch { 1649a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1650a30f8f8cSSatish Balay Mat a, b, c, d; 1651ace3abfcSBarry Smith PetscBool flg; 1652a30f8f8cSSatish Balay 1653a30f8f8cSSatish Balay PetscFunctionBegin; 16549371c9d4SSatish Balay a = matA->A; 16559371c9d4SSatish Balay b = matA->B; 16569371c9d4SSatish Balay c = matB->A; 16579371c9d4SSatish Balay d = matB->B; 1658a30f8f8cSSatish Balay 16599566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 166048a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1661462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a30f8f8cSSatish Balay } 1664a30f8f8cSSatish Balay 166566976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1666d71ae5a4SJacob Faibussowitsch { 16674c7a3774SStefano Zampini PetscBool isbaij; 16683c896bc6SHong Zhang 16693c896bc6SHong Zhang PetscFunctionBegin; 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16715f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16723c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16733c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16749566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16759566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16769566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16773c896bc6SHong Zhang } else { 16784c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16794c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16804c7a3774SStefano Zampini 16819566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16829566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16833c896bc6SHong Zhang } 16849566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16863c896bc6SHong Zhang } 16873c896bc6SHong Zhang 168866976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1689d71ae5a4SJacob Faibussowitsch { 16904fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16914fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16924fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16934fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16944fe895cdSHong Zhang 16954fe895cdSHong Zhang PetscFunctionBegin; 16964fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16974fe895cdSHong Zhang PetscScalar alpha = a; 16984fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16994fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 17009566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1701792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 17024fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 17034fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 17049566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1705792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 17069566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1707ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 17089566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 17099566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 17109566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 17114fe895cdSHong Zhang } else { 17124de5dceeSHong Zhang Mat B; 17134de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 17145f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 17159566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 17169566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 17179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 17189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 17199566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 17209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 17219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17229566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17239566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17249566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17259566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17269566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17279566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17289566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17299566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17309566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17319566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17329566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17334fe895cdSHong Zhang } 17343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17354fe895cdSHong Zhang } 17364fe895cdSHong Zhang 173766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1738d71ae5a4SJacob Faibussowitsch { 17391302d50aSBarry Smith PetscInt i; 1740afebec48SHong Zhang PetscBool flg; 1741a5e6ed63SBarry Smith 17426849ba73SBarry Smith PetscFunctionBegin; 17439566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1744a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17459566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 174648a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17474dcd73b1SHong Zhang } 17483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1749a5e6ed63SBarry Smith } 1750a5e6ed63SBarry Smith 175166976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1752d71ae5a4SJacob Faibussowitsch { 17537d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17546f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17557d68702bSBarry Smith 17567d68702bSBarry Smith PetscFunctionBegin; 17576f33a894SBarry Smith if (!Y->preallocated) { 17589566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17596f33a894SBarry Smith } else if (!aij->nz) { 1760b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17619566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1762b83222d8SBarry Smith aij->nonew = nonew; 17637d68702bSBarry Smith } 17649566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17667d68702bSBarry Smith } 17677d68702bSBarry Smith 176866976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1769d71ae5a4SJacob Faibussowitsch { 17703b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17713b49f96aSBarry Smith 17723b49f96aSBarry Smith PetscFunctionBegin; 17735f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17749566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17753b49f96aSBarry Smith if (d) { 17763b49f96aSBarry Smith PetscInt rstart; 17779566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17783b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17793b49f96aSBarry Smith } 17803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17813b49f96aSBarry Smith } 17823b49f96aSBarry Smith 178366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1784d71ae5a4SJacob Faibussowitsch { 1785a5b7ff6bSBarry Smith PetscFunctionBegin; 1786a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1788a5b7ff6bSBarry Smith } 17893b49f96aSBarry Smith 179017ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 179117ea310bSPierre Jolivet { 179217ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 179317ea310bSPierre Jolivet 179417ea310bSPierre Jolivet PetscFunctionBegin; 179517ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 179617ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 179717ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 179817ea310bSPierre Jolivet } 179917ea310bSPierre Jolivet 18006cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1801789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1802789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 18036cff0a6bSPierre Jolivet 18043964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1805a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1806a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1807a9d4b620SHong Zhang MatMult_MPISBAIJ, 180897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1809431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1810431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin /* 10*/ NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 181741f059aeSBarry Smith MatSOR_MPISBAIJ, 1818a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 181997304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1820a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1821a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1822a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1823a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 182497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1825a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1826a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1827a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1828f4259b30SLisandro Dalcin /* 24*/ NULL, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 183326cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1837f4259b30SLisandro Dalcin NULL, 1838d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18447dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1845d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1846a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18473c896bc6SHong Zhang MatCopy_MPISBAIJ, 1848f4259b30SLisandro Dalcin /* 44*/ NULL, 1849a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18507d68702bSBarry Smith MatShift_MPISBAIJ, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin /* 49*/ NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin /* 54*/ NULL, 1859f4259b30SLisandro Dalcin NULL, 1860a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1861f4259b30SLisandro Dalcin NULL, 1862a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18637dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin /* 64*/ NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1874f4259b30SLisandro Dalcin NULL, 187528d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin /* 74*/ NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin /* 79*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 18875bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1888f4259b30SLisandro Dalcin /* 84*/ NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin /* 89*/ NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin /* 94*/ NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin /* 99*/ NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 19062726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin /*104*/ NULL, 190999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1910d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1911d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 191295936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1913f4259b30SLisandro Dalcin /*109*/ NULL, 1914f4259b30SLisandro Dalcin NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 19173b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1918f4259b30SLisandro Dalcin /*114*/ NULL, 1919f4259b30SLisandro Dalcin NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 1922f4259b30SLisandro Dalcin NULL, 1923f4259b30SLisandro Dalcin /*119*/ NULL, 1924f4259b30SLisandro Dalcin NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin /*124*/ NULL, 1929f4259b30SLisandro Dalcin NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin /*129*/ NULL, 1934f4259b30SLisandro Dalcin NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin NULL, 1937f4259b30SLisandro Dalcin NULL, 1938f4259b30SLisandro Dalcin /*134*/ NULL, 1939f4259b30SLisandro Dalcin NULL, 1940f4259b30SLisandro Dalcin NULL, 1941f4259b30SLisandro Dalcin NULL, 1942f4259b30SLisandro Dalcin NULL, 194346533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1944f4259b30SLisandro Dalcin NULL, 1945f4259b30SLisandro Dalcin NULL, 1946f4259b30SLisandro Dalcin NULL, 1947f4259b30SLisandro Dalcin NULL, 1948d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1949d70f29a3SPierre Jolivet NULL, 1950d70f29a3SPierre Jolivet NULL, 195199a7f59eSMark Adams NULL, 195299a7f59eSMark Adams NULL, 19537fb60732SBarry Smith NULL, 1954dec0b466SHong Zhang /*150*/ NULL, 1955eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 19564cc2b5b5SPierre Jolivet NULL, 195742ce410bSJunchao Zhang NULL, 195842ce410bSJunchao Zhang NULL, 1959eede4a3fSMark Adams NULL}; 1960a30f8f8cSSatish Balay 196166976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1962d71ae5a4SJacob Faibussowitsch { 1963476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1964535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19655d2a9ed1SStefano Zampini PetscMPIInt size; 1966a23d5eceSKris Buschelman 1967a23d5eceSKris Buschelman PetscFunctionBegin; 1968ad79cf63SBarry Smith if (B->hash_active) { 1969aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1970ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1971ad79cf63SBarry Smith } 1972ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19739566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19769566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19775f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19785f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1979899cda47SBarry Smith 1980d0f46423SBarry Smith mbs = B->rmap->n / bs; 1981d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19825f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1983a23d5eceSKris Buschelman 1984d0f46423SBarry Smith B->rmap->bs = bs; 1985a23d5eceSKris Buschelman b->bs2 = bs * bs; 1986a23d5eceSKris Buschelman b->mbs = mbs; 1987a23d5eceSKris Buschelman b->Mbs = Mbs; 1988de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1989de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1990a23d5eceSKris Buschelman 1991ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1992d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1993d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1994a23d5eceSKris Buschelman 1995d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1996d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1997a23d5eceSKris Buschelman 1998cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1999eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2000cb7b82ddSBarry Smith #else 20019566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2002cb7b82ddSBarry Smith #endif 20039566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 20049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 20059566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 20069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 20079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 20089566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 20099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 20109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 20119566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 2012cb7b82ddSBarry Smith 20139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2014c508b908SBarry Smith 2015c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 20169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 20179566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 20189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 20199566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2020c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2021cb7b82ddSBarry Smith 2022c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2023ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 20249566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 20259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 20269566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 2027c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2028a23d5eceSKris Buschelman 20299566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 20309566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 203126fbe8dcSKarl Rupp 2032526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2033cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2034cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2036a23d5eceSKris Buschelman } 2037a23d5eceSKris Buschelman 203866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2039d71ae5a4SJacob Faibussowitsch { 204002106b30SBarry Smith PetscInt m, rstart, cend; 2041f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2042f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2043f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2044bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20453bd0feecSPierre Jolivet PetscBool nooffprocentries; 2046dfb205c3SBarry Smith 2047dfb205c3SBarry Smith PetscFunctionBegin; 20485f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20539566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2054dfb205c3SBarry Smith m = B->rmap->n / bs; 2055dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2056dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2057dfb205c3SBarry Smith 20585f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2060dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2061dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20625f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20634cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2064dfb205c3SBarry Smith JJ = jj + ii[i]; 20650cd7f59aSBarry Smith bd = 0; 2066dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20670cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2068dfb205c3SBarry Smith JJ++; 20690cd7f59aSBarry Smith bd++; 2070dfb205c3SBarry Smith } 2071dfb205c3SBarry Smith d = 0; 2072dfb205c3SBarry Smith for (; j < nz; j++) { 2073dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2074dfb205c3SBarry Smith d++; 2075dfb205c3SBarry Smith } 2076dfb205c3SBarry Smith d_nnz[i] = d; 20770cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20780cd7f59aSBarry Smith nz = nz - bd; 20790cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2080dfb205c3SBarry Smith } 20819566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20829566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20839566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2084dfb205c3SBarry Smith 2085dfb205c3SBarry Smith values = (PetscScalar *)V; 208648a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2087dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2088dfb205c3SBarry Smith PetscInt row = i + rstart; 2089dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2090dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2091bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2092dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20939566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2094bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2095bb80cfbbSStefano Zampini PetscInt j; 20960cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20970cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20989566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20990cd7f59aSBarry Smith } 21000cd7f59aSBarry Smith } 2101dfb205c3SBarry Smith } 2102dfb205c3SBarry Smith 21039566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 21043bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 21053bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 21069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21083bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21093bd0feecSPierre Jolivet 21109566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 21113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2112dfb205c3SBarry Smith } 2113dfb205c3SBarry Smith 21140bad9183SKris Buschelman /*MC 2115fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2116828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2117828413b8SBarry Smith the matrix is stored. 2118828413b8SBarry Smith 2119828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 212011a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 21210bad9183SKris Buschelman 21222ef1f0ffSBarry Smith Options Database Key: 212311a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 21240bad9183SKris Buschelman 21252ef1f0ffSBarry Smith Level: beginner 21262ef1f0ffSBarry Smith 212711a5261eSBarry Smith Note: 2128476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2129476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2130476417e5SBarry Smith 21311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 21320bad9183SKris Buschelman M*/ 21330bad9183SKris Buschelman 2134d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2135d71ae5a4SJacob Faibussowitsch { 2136b5df2d14SHong Zhang Mat_MPISBAIJ *b; 213794ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2138b5df2d14SHong Zhang 2139b5df2d14SHong Zhang PetscFunctionBegin; 21404dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2141b0a32e0cSBarry Smith B->data = (void *)b; 2142aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2143b5df2d14SHong Zhang 2144b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2145b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2146b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2147b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 214826fbe8dcSKarl Rupp 21499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2151b5df2d14SHong Zhang 2152b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2154b5df2d14SHong Zhang 2155b5df2d14SHong Zhang /* build cache for off array entries formed */ 21569566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 215726fbe8dcSKarl Rupp 2158b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21590298fd71SBarry Smith b->colmap = NULL; 21600298fd71SBarry Smith b->garray = NULL; 2161b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2162b5df2d14SHong Zhang 2163b5df2d14SHong Zhang /* stuff used in block assembly */ 2164f4259b30SLisandro Dalcin b->barray = NULL; 2165b5df2d14SHong Zhang 2166b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2167f4259b30SLisandro Dalcin b->lvec = NULL; 2168f4259b30SLisandro Dalcin b->Mvctx = NULL; 2169f4259b30SLisandro Dalcin b->slvec0 = NULL; 2170f4259b30SLisandro Dalcin b->slvec0b = NULL; 2171f4259b30SLisandro Dalcin b->slvec1 = NULL; 2172f4259b30SLisandro Dalcin b->slvec1a = NULL; 2173f4259b30SLisandro Dalcin b->slvec1b = NULL; 2174f4259b30SLisandro Dalcin b->sMvctx = NULL; 2175b5df2d14SHong Zhang 2176b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2177f4259b30SLisandro Dalcin b->rowindices = NULL; 2178f4259b30SLisandro Dalcin b->rowvalues = NULL; 2179b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2180b5df2d14SHong Zhang 2181b5df2d14SHong Zhang /* hash table stuff */ 2182f4259b30SLisandro Dalcin b->ht = NULL; 2183f4259b30SLisandro Dalcin b->hd = NULL; 2184b5df2d14SHong Zhang b->ht_size = 0; 2185b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2186b5df2d14SHong Zhang b->ht_fact = 0; 2187b5df2d14SHong Zhang b->ht_total_ct = 0; 2188b5df2d14SHong Zhang b->ht_insert_ct = 0; 2189b5df2d14SHong Zhang 21907dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21917a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21927a868f3eSHong Zhang 2193f4259b30SLisandro Dalcin b->in_loc = NULL; 2194f4259b30SLisandro Dalcin b->v_loc = NULL; 219559ffdab8SBarry Smith b->n_loc = 0; 219694ae4db5SBarry Smith 21979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 22009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 22016214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 22029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 22036214f412SHong Zhang #endif 2204d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 22059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2206d24d4204SJose E. Roman #endif 22079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 22089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2209aa5a9175SDahai Guo 2210b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2211b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2212b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2213b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2214eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2215b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2216eb1ec7c1SStefano Zampini #else 2217b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2218eb1ec7c1SStefano Zampini #endif 221913647f61SHong Zhang 22209566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2221d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 22229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 222394ae4db5SBarry Smith if (flg) { 222494ae4db5SBarry Smith PetscReal fact = 1.39; 22259566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 22269566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 222794ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 22289566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 22299566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 223094ae4db5SBarry Smith } 2231d0609cedSBarry Smith PetscOptionsEnd(); 22323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2233b5df2d14SHong Zhang } 2234b5df2d14SHong Zhang 22352920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2236209238afSKris Buschelman /*MC 2237002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2238209238afSKris Buschelman 223911a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 224011a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2241209238afSKris Buschelman 224211a5261eSBarry Smith Options Database Key: 2243c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2244209238afSKris Buschelman 2245209238afSKris Buschelman Level: beginner 2246209238afSKris Buschelman 22471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2248209238afSKris Buschelman M*/ 2249209238afSKris Buschelman 22505d83a8b1SBarry Smith /*@ 2251b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2252b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2253b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2254b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2255b5df2d14SHong Zhang 2256c3339decSBarry Smith Collective 2257b5df2d14SHong Zhang 2258b5df2d14SHong Zhang Input Parameters: 22591c4f3114SJed Brown + B - the matrix 2260bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2261bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2262b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2263b5df2d14SHong Zhang submatrix (same for all local rows) 2264b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22656d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22662ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 226795742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2268b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2269b5df2d14SHong Zhang submatrix (same for all local rows). 2270b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2271c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22722ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2273b5df2d14SHong Zhang 2274b5df2d14SHong Zhang Options Database Keys: 2275a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2276b5df2d14SHong Zhang block calculations (much slower) 2277a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2278b5df2d14SHong Zhang 22792ef1f0ffSBarry Smith Level: intermediate 22802ef1f0ffSBarry Smith 2281b5df2d14SHong Zhang Notes: 2282b5df2d14SHong Zhang 228311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2284b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2285b5df2d14SHong Zhang 228649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228749a6f317SBarry Smith 2288b5df2d14SHong Zhang Storage Information: 2289b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2290b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2291b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2292b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2293b5df2d14SHong Zhang 2294b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22952ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22962ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2297b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22982ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2299b5df2d14SHong Zhang 230011a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2301aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 23022ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2303aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2304aa95bbe8SBarry Smith 2305b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2306b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2307b5df2d14SHong Zhang 2308b5df2d14SHong Zhang .vb 2309b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2310a4b1a0f6SJed Brown -------------------------- 2311c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2312c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2313c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2314a4b1a0f6SJed Brown -------------------------- 2315b5df2d14SHong Zhang .ve 2316b5df2d14SHong Zhang 2317b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2318b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23196d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 232011a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2321b5df2d14SHong Zhang 23222ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23236d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23242ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2325c2fc9fa9SBarry Smith 2326b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 23272ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2328b5df2d14SHong Zhang 23291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2330b5df2d14SHong Zhang @*/ 2331d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2332d71ae5a4SJacob Faibussowitsch { 2333b5df2d14SHong Zhang PetscFunctionBegin; 23346ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23356ba663aaSJed Brown PetscValidType(B, 1); 23366ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2337cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2339b5df2d14SHong Zhang } 2340b5df2d14SHong Zhang 23412920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 23425d83a8b1SBarry Smith /*@ 234311a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2344a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2345a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 234620f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2347a30f8f8cSSatish Balay 2348d083f849SBarry Smith Collective 2349a30f8f8cSSatish Balay 2350a30f8f8cSSatish Balay Input Parameters: 2351a30f8f8cSSatish Balay + comm - MPI communicator 235211a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 235320f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 235420f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2355a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2356a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 235720f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2358a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2359a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 236020f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 236120f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2362a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2363a30f8f8cSSatish Balay submatrix (same for all local rows) 2364a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23656d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23662ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 236795742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 236895742e49SBarry Smith set its value even if it is zero. 2369a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2370a30f8f8cSSatish Balay submatrix (same for all local rows). 2371a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2372a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23732ef1f0ffSBarry Smith each block row) or `NULL`. 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay Output Parameter: 2376a30f8f8cSSatish Balay . A - the matrix 2377a30f8f8cSSatish Balay 2378a30f8f8cSSatish Balay Options Database Keys: 2379a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2380a30f8f8cSSatish Balay block calculations (much slower) 2381a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2382a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2383a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2384a30f8f8cSSatish Balay 23852ef1f0ffSBarry Smith Level: intermediate 23862ef1f0ffSBarry Smith 23872ef1f0ffSBarry Smith Notes: 238877433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2389f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 239011a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2391175b88e8SBarry Smith 2392d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23936d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2394d1be2dadSMatthew Knepley 2395a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2396a30f8f8cSSatish Balay (possibly both). 2397a30f8f8cSSatish Balay 239811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2399a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2400a30f8f8cSSatish Balay 2401727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by 2402727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 2403727bdf9bSBarry Smith 240449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 240549a6f317SBarry Smith 2406a30f8f8cSSatish Balay Storage Information: 2407a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2408a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2409a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2410a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 24132ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 24142ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2415a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 24162ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2417a30f8f8cSSatish Balay 2418a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2419a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2420a30f8f8cSSatish Balay 2421a30f8f8cSSatish Balay .vb 2422a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2423a4b1a0f6SJed Brown -------------------------- 2424c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2425c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2426c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2427a4b1a0f6SJed Brown -------------------------- 2428a30f8f8cSSatish Balay .ve 2429a30f8f8cSSatish Balay 2430a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2431a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24326d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24332ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2434a30f8f8cSSatish Balay 24352ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24366d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24372ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2438a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24392ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2440a30f8f8cSSatish Balay 2441727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, 2442727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 2443a30f8f8cSSatish Balay @*/ 2444d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2445d71ae5a4SJacob Faibussowitsch { 24461302d50aSBarry Smith PetscMPIInt size; 2447a30f8f8cSSatish Balay 2448a30f8f8cSSatish Balay PetscFunctionBegin; 24499566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2452273d9f13SBarry Smith if (size > 1) { 24539566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24549566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2455273d9f13SBarry Smith } else { 24569566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24579566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2458273d9f13SBarry Smith } 24593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2460a30f8f8cSSatish Balay } 2461a30f8f8cSSatish Balay 2462d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2463d71ae5a4SJacob Faibussowitsch { 2464a30f8f8cSSatish Balay Mat mat; 2465a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2466d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2467387bc808SHong Zhang PetscScalar *array; 2468a30f8f8cSSatish Balay 2469a30f8f8cSSatish Balay PetscFunctionBegin; 2470f4259b30SLisandro Dalcin *newmat = NULL; 247126fbe8dcSKarl Rupp 24729566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24749566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24759566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24769566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2477e1b6402fSHong Zhang 2478420957c1SBarry Smith if (matin->hash_active) { 2479420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2480420957c1SBarry Smith } else { 2481d5f3da31SBarry Smith mat->factortype = matin->factortype; 2482273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 248382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24847fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24857fff6886SHong Zhang 2486b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2487a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2488a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2489a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2490a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2491a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2492a30f8f8cSSatish Balay 2493a30f8f8cSSatish Balay a->size = oldmat->size; 2494a30f8f8cSSatish Balay a->rank = oldmat->rank; 2495a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2496a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2497f4259b30SLisandro Dalcin a->rowindices = NULL; 2498f4259b30SLisandro Dalcin a->rowvalues = NULL; 2499a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2500f4259b30SLisandro Dalcin a->barray = NULL; 2501899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2502899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2503899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2504899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2505a30f8f8cSSatish Balay 2506a30f8f8cSSatish Balay /* hash table stuff */ 2507f4259b30SLisandro Dalcin a->ht = NULL; 2508f4259b30SLisandro Dalcin a->hd = NULL; 2509a30f8f8cSSatish Balay a->ht_size = 0; 2510a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2511a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2512a30f8f8cSSatish Balay a->ht_total_ct = 0; 2513a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2514a30f8f8cSSatish Balay 25159566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2516a30f8f8cSSatish Balay if (oldmat->colmap) { 2517a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2518eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2519a30f8f8cSSatish Balay #else 25209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 25219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2522a30f8f8cSSatish Balay #endif 2523f4259b30SLisandro Dalcin } else a->colmap = NULL; 2524387bc808SHong Zhang 2525f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 25269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 25279566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2528f4259b30SLisandro Dalcin } else a->garray = NULL; 2529a30f8f8cSSatish Balay 25309566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 25319566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 25329566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 253382327fa8SHong Zhang 25349566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25359566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2536387bc808SHong Zhang 25379566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25389566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25399566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25409566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25429566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25439566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2545387bc808SHong Zhang 2546387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2548387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 254982327fa8SHong Zhang 25509566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25519566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2552420957c1SBarry Smith } 25539566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2554a30f8f8cSSatish Balay *newmat = mat; 25553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2556a30f8f8cSSatish Balay } 2557a30f8f8cSSatish Balay 2558618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2559618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2560618cc2edSLisandro Dalcin 25616cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2562d71ae5a4SJacob Faibussowitsch { 25637f489da9SVaclav Hapla PetscBool isbinary; 256495936485SShri Abhyankar 256595936485SShri Abhyankar PetscFunctionBegin; 25669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25675f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25689566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 257095936485SShri Abhyankar } 257195936485SShri Abhyankar 2572789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2573d71ae5a4SJacob Faibussowitsch { 257424d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2575f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2576ca54ac64SHong Zhang PetscReal atmp; 257787828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25781302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25791302d50aSBarry Smith PetscMPIInt rank, size; 25806497c311SBarry Smith PetscInt *rowners_bs, count, source; 258187828ca2SBarry Smith PetscScalar *va; 25828a1c53f2SBarry Smith MatScalar *ba; 2583f4c0e9e4SHong Zhang MPI_Status stat; 258424d5174aSHong Zhang 258524d5174aSHong Zhang PetscFunctionBegin; 25865f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25879566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25889566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2589f4c0e9e4SHong Zhang 25909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2592f4c0e9e4SHong Zhang 2593d0f46423SBarry Smith bs = A->rmap->bs; 2594f4c0e9e4SHong Zhang mbs = a->mbs; 2595f4c0e9e4SHong Zhang Mbs = a->Mbs; 2596f4c0e9e4SHong Zhang ba = b->a; 2597f4c0e9e4SHong Zhang bi = b->i; 2598f4c0e9e4SHong Zhang bj = b->j; 2599f4c0e9e4SHong Zhang 2600f4c0e9e4SHong Zhang /* find ownerships */ 2601d0f46423SBarry Smith rowners_bs = A->rmap->range; 2602f4c0e9e4SHong Zhang 2603f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 26049566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2605f4c0e9e4SHong Zhang 2606f4c0e9e4SHong Zhang /* row_max for B */ 2607b8475685SHong Zhang if (rank != size - 1) { 2608f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 26099371c9d4SSatish Balay ncols = bi[1] - bi[0]; 26109371c9d4SSatish Balay bi++; 2611f4c0e9e4SHong Zhang brow = bs * i; 2612f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2613f4c0e9e4SHong Zhang bcol = bs * (*bj); 2614f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2615ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 261604d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2617f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 26189371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 26199371c9d4SSatish Balay ba++; 2620ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2621ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2622f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2623f4c0e9e4SHong Zhang } 2624f4c0e9e4SHong Zhang } 2625f4c0e9e4SHong Zhang bj++; 2626f4c0e9e4SHong Zhang } 2627f4c0e9e4SHong Zhang } 2628f4c0e9e4SHong Zhang 2629f4c0e9e4SHong Zhang /* send values to its owners */ 26306497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) { 2631f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2632ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26336497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2634ca54ac64SHong Zhang } 2635f4c0e9e4SHong Zhang } 2636f4c0e9e4SHong Zhang 2637f4c0e9e4SHong Zhang /* receive values */ 2638ca54ac64SHong Zhang if (rank) { 2639f4c0e9e4SHong Zhang rvalues = work; 2640ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2641f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26426497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2643f4c0e9e4SHong Zhang /* process values */ 2644f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2645ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2646f4c0e9e4SHong Zhang } 2647f4c0e9e4SHong Zhang } 2648ca54ac64SHong Zhang } 2649f4c0e9e4SHong Zhang 26509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26519566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 265324d5174aSHong Zhang } 26542798e883SHong Zhang 2655789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2656d71ae5a4SJacob Faibussowitsch { 26572798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2658d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26593649974fSBarry Smith PetscScalar *x, *ptr, *from; 2660ffe4fb16SHong Zhang Vec bb1; 26613649974fSBarry Smith const PetscScalar *b; 2662ffe4fb16SHong Zhang 2663ffe4fb16SHong Zhang PetscFunctionBegin; 26645f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26655f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2666ffe4fb16SHong Zhang 2667a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26689566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2670a2b30743SBarry Smith } 2671a2b30743SBarry Smith 2672ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2673ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26749566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2675ffe4fb16SHong Zhang its--; 2676ffe4fb16SHong Zhang } 2677ffe4fb16SHong Zhang 26789566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2679ffe4fb16SHong Zhang while (its--) { 2680ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26819566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2682ffe4fb16SHong Zhang 2683ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26849566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26859566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26879566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2688ffe4fb16SHong Zhang 26899566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2690ffe4fb16SHong Zhang 2691ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26929566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26939566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26959566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2696ffe4fb16SHong Zhang 2697ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2698629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2699629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2700ffe4fb16SHong Zhang 27019566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27039566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2705ffe4fb16SHong Zhang 2706ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 27079566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2708ffe4fb16SHong Zhang 2709ffe4fb16SHong Zhang /* local diagonal sweep */ 27109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2711ffe4fb16SHong Zhang } 27129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2713fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2715fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2717fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2718fa22f6d0SBarry Smith Vec xx1; 2719ace3abfcSBarry Smith PetscBool hasop; 272020f1ed55SBarry Smith const PetscScalar *diag; 2721887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 272220f1ed55SBarry Smith PetscInt i, n; 2723fa22f6d0SBarry Smith 2724fa22f6d0SBarry Smith if (!mat->xx1) { 27259566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 27269566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2727fa22f6d0SBarry Smith } 2728fa22f6d0SBarry Smith xx1 = mat->xx1; 2729fa22f6d0SBarry Smith bb1 = mat->bb1; 2730fa22f6d0SBarry Smith 27319566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2732fa22f6d0SBarry Smith 2733fa22f6d0SBarry Smith if (!mat->diag) { 2734effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27359566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27369566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2737fa22f6d0SBarry Smith } 27389566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2739fa22f6d0SBarry Smith 2740fa22f6d0SBarry Smith if (hasop) { 27419566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27429566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 274320f1ed55SBarry Smith } else { 274420f1ed55SBarry Smith /* 274520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27469566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27479566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 274820f1ed55SBarry Smith */ 27499566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27509566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27519566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27529566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27539566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2754887ee2caSBarry Smith if (omega == 1.0) { 275526fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2757887ee2caSBarry Smith } else { 275826fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27599566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2760887ee2caSBarry Smith } 27619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 276520f1ed55SBarry Smith } 2766fa22f6d0SBarry Smith 2767fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2768629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2769629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27709566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27719566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27729566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27739566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27759566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27779566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27789566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2779fa22f6d0SBarry Smith 2780fa22f6d0SBarry Smith /* local sweep */ 27819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27829566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2783f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2785ffe4fb16SHong Zhang } 2786ffe4fb16SHong Zhang 2787dfb205c3SBarry Smith /*@ 2788d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2789dfb205c3SBarry Smith 2790d083f849SBarry Smith Collective 2791dfb205c3SBarry Smith 2792dfb205c3SBarry Smith Input Parameters: 2793dfb205c3SBarry Smith + comm - MPI communicator 2794dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 279511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2796dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2797d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27982ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27992ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 28002ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2801483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2802dfb205c3SBarry Smith . j - column indices 2803dfb205c3SBarry Smith - a - matrix values 2804dfb205c3SBarry Smith 2805dfb205c3SBarry Smith Output Parameter: 2806dfb205c3SBarry Smith . mat - the matrix 2807dfb205c3SBarry Smith 2808dfb205c3SBarry Smith Level: intermediate 2809dfb205c3SBarry Smith 2810dfb205c3SBarry Smith Notes: 28112ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 28122ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 28132ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2814dfb205c3SBarry Smith 28152ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2816dfb205c3SBarry Smith 28171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2818d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2819dfb205c3SBarry Smith @*/ 2820d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2821d71ae5a4SJacob Faibussowitsch { 2822dfb205c3SBarry Smith PetscFunctionBegin; 28235f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 28245f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 28259566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 28269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 28279566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 28289566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 28293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2830dfb205c3SBarry Smith } 2831dfb205c3SBarry Smith 28325d83a8b1SBarry Smith /*@ 283311a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2834dfb205c3SBarry Smith 2835d083f849SBarry Smith Collective 2836dfb205c3SBarry Smith 2837dfb205c3SBarry Smith Input Parameters: 28381c4f3114SJed Brown + B - the matrix 2839dfb205c3SBarry Smith . bs - the block size 2840d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2841d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2842d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2843dfb205c3SBarry Smith 2844664954b6SBarry Smith Level: advanced 2845664954b6SBarry Smith 2846664954b6SBarry Smith Notes: 2847d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2848d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2849d8a51d2aSBarry Smith called this routine. 2850d8a51d2aSBarry Smith 28510cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28520cd7f59aSBarry Smith and usually the numerical values as well 28530cd7f59aSBarry Smith 2854d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2855dfb205c3SBarry Smith 2856d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2857d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2858dfb205c3SBarry Smith @*/ 2859d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2860d71ae5a4SJacob Faibussowitsch { 2861dfb205c3SBarry Smith PetscFunctionBegin; 2862cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2864dfb205c3SBarry Smith } 2865dfb205c3SBarry Smith 2866d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2867d71ae5a4SJacob Faibussowitsch { 286810c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 286910c56fdeSHong Zhang PetscInt *indx; 287010c56fdeSHong Zhang PetscScalar *values; 2871dfb205c3SBarry Smith 28724dcd73b1SHong Zhang PetscFunctionBegin; 28739566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 287410c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 287510c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2876de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 287710c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2878de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28794dcd73b1SHong Zhang 28809566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28819371c9d4SSatish Balay mbs = m / bs; 28829371c9d4SSatish Balay Nbs = N / cbs; 288348a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2884da91a574SPierre Jolivet nbs = n / cbs; 28854dcd73b1SHong Zhang 28869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2887d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2888de25e9cbSPierre Jolivet 28899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2891de25e9cbSPierre Jolivet if (rank == size - 1) { 2892de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28935f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2894de25e9cbSPierre Jolivet } 2895de25e9cbSPierre Jolivet 2896d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28979566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 289810c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28999566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 29004dcd73b1SHong Zhang nnz = nnz / bs; 29014dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 29029566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 29039566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 29044dcd73b1SHong Zhang } 29059566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29069566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 29074dcd73b1SHong Zhang 29089566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 29099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 29109566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 29119566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 29129566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 29139566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2914d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 29154dcd73b1SHong Zhang } 29164dcd73b1SHong Zhang 291710c56fdeSHong Zhang /* numeric phase */ 29189566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 29199566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 29204dcd73b1SHong Zhang 29219566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 29224dcd73b1SHong Zhang for (i = 0; i < m; i++) { 29239566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29244dcd73b1SHong Zhang Ii = i + rstart; 29259566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 29269566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29274dcd73b1SHong Zhang } 29289566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 29309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 29313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29324dcd73b1SHong Zhang } 2933