xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 59ffdab8fbb7b51905835c8be7927c0cc24f90ca)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
66dfbe8321SBarry Smith   PetscErrorCode ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay #define CHUNKSIZE  10
77a30f8f8cSSatish Balay 
78a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
79a30f8f8cSSatish Balay { \
80a30f8f8cSSatish Balay  \
81a30f8f8cSSatish Balay     brow = row/bs;  \
82a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
83a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
84a30f8f8cSSatish Balay       bcol = col/bs; \
85a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
86a30f8f8cSSatish Balay       low = 0; high = nrow; \
87a30f8f8cSSatish Balay       while (high-low > 3) { \
88a30f8f8cSSatish Balay         t = (low+high)/2; \
89a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
90a30f8f8cSSatish Balay         else              low  = t; \
91a30f8f8cSSatish Balay       } \
92a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
93a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
94a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
95a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
96a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
97a30f8f8cSSatish Balay           else                    *bap  = value;  \
98a30f8f8cSSatish Balay           goto a_noinsert; \
99a30f8f8cSSatish Balay         } \
100a30f8f8cSSatish Balay       } \
101a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
102085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
103ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \
104a30f8f8cSSatish Balay       N = nrow++ - 1;  \
105a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
106a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
107a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
108a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
111a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
112a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
113a30f8f8cSSatish Balay       a_noinsert:; \
114a30f8f8cSSatish Balay     ailen[brow] = nrow; \
115a30f8f8cSSatish Balay }
116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
117a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
118a30f8f8cSSatish Balay { \
119a30f8f8cSSatish Balay     brow = row/bs;  \
120a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
121a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
122a30f8f8cSSatish Balay       bcol = col/bs; \
123a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
124a30f8f8cSSatish Balay       low = 0; high = nrow; \
125a30f8f8cSSatish Balay       while (high-low > 3) { \
126a30f8f8cSSatish Balay         t = (low+high)/2; \
127a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
128a30f8f8cSSatish Balay         else              low  = t; \
129a30f8f8cSSatish Balay       } \
130a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
131a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
132a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
133a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
134a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
135a30f8f8cSSatish Balay           else                    *bap  = value;  \
136a30f8f8cSSatish Balay           goto b_noinsert; \
137a30f8f8cSSatish Balay         } \
138a30f8f8cSSatish Balay       } \
139a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
140085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
141ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \
142a30f8f8cSSatish Balay       N = nrow++ - 1;  \
143a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
144a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
145a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
146a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
149a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
150a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
151a30f8f8cSSatish Balay       b_noinsert:; \
152a30f8f8cSSatish Balay     bilen[brow] = nrow; \
153a30f8f8cSSatish Balay }
154a30f8f8cSSatish Balay #endif
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1574a2ae208SSatish Balay #undef __FUNCT__
1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
160a30f8f8cSSatish Balay {
161a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
162dfbe8321SBarry Smith   PetscErrorCode ierr;
1631302d50aSBarry Smith   PetscInt       i,N = m*n;
164a30f8f8cSSatish Balay   MatScalar      *vsingle;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16805b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
170a30f8f8cSSatish Balay     b->setvalueslen  = N;
171a30f8f8cSSatish Balay   }
172a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
173a30f8f8cSSatish Balay 
174a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
175a30f8f8cSSatish Balay     vsingle[i] = v[i];
176a30f8f8cSSatish Balay   }
177a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
179a30f8f8cSSatish Balay }
180a30f8f8cSSatish Balay 
1814a2ae208SSatish Balay #undef __FUNCT__
1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
184a30f8f8cSSatish Balay {
185a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
186dfbe8321SBarry Smith   PetscErrorCode ierr;
1871302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
188a30f8f8cSSatish Balay   MatScalar      *vsingle;
189a30f8f8cSSatish Balay 
190a30f8f8cSSatish Balay   PetscFunctionBegin;
191a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19205b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19382502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
194a30f8f8cSSatish Balay     b->setvalueslen  = N;
195a30f8f8cSSatish Balay   }
196a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
197a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
198a30f8f8cSSatish Balay     vsingle[i] = v[i];
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
201a30f8f8cSSatish Balay   PetscFunctionReturn(0);
202a30f8f8cSSatish Balay }
203a30f8f8cSSatish Balay #endif
204a30f8f8cSSatish Balay 
205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
206a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
207a30f8f8cSSatish Balay */
2084a2ae208SSatish Balay #undef __FUNCT__
209be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
211a30f8f8cSSatish Balay {
212a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
213a30f8f8cSSatish Balay   MatScalar      value;
214b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
215dfbe8321SBarry Smith   PetscErrorCode ierr;
2161302d50aSBarry Smith   PetscInt       i,j,row,col;
217899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
218899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
219899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   /* Some Variables required in the macro */
222a30f8f8cSSatish Balay   Mat            A = baij->A;
223a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2241302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
225a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
226a30f8f8cSSatish Balay 
227a30f8f8cSSatish Balay   Mat            B = baij->B;
228a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2291302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
230a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
231a30f8f8cSSatish Balay 
2321302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2331302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
234a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
235a30f8f8cSSatish Balay 
236a30f8f8cSSatish Balay   /* for stash */
237*59ffdab8SBarry Smith   PetscInt      n_loc, *in_loc;
238*59ffdab8SBarry Smith   MatScalar     *v_loc;
239a30f8f8cSSatish Balay 
240a30f8f8cSSatish Balay   PetscFunctionBegin;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   if (!baij->donotstash){
243*59ffdab8SBarry Smith     if (n > baij->n_loc) {
244*59ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
245*59ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
246*59ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
247*59ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
248*59ffdab8SBarry Smith       baij->n_loc = n;
249*59ffdab8SBarry Smith     }
250*59ffdab8SBarry Smith     in_loc = baij->in_loc;
251*59ffdab8SBarry Smith     v_loc  = baij->v_loc;
252a30f8f8cSSatish Balay   }
253a30f8f8cSSatish Balay 
254a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
255a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2562515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
257899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
258a30f8f8cSSatish Balay #endif
259a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
260a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
261a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26301b2bd88SHong Zhang           if (a->ignore_ltriangular){
26401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26501b2bd88SHong Zhang           } else {
26601b2bd88SHong Zhang             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
26701b2bd88SHong Zhang           }
26801b2bd88SHong Zhang         }
269a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
270a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
271a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
272a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
273a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
274a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
275a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
276a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
278899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
279a30f8f8cSSatish Balay #endif
280a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
281a30f8f8cSSatish Balay           if (mat->was_assembled) {
282a30f8f8cSSatish Balay             if (!baij->colmap) {
283653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
284a30f8f8cSSatish Balay             }
285a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
286a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28771730473SSatish Balay             col  = col - 1;
288a30f8f8cSSatish Balay #else
28971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
290a30f8f8cSSatish Balay #endif
291a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
292a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
293a30f8f8cSSatish Balay               col =  in[j];
294a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
295a30f8f8cSSatish Balay               B = baij->B;
296a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
297a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
298a30f8f8cSSatish Balay               ba=b->a;
29971730473SSatish Balay             } else col += in[j]%bs;
300a30f8f8cSSatish Balay           } else col = in[j];
301a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
302a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
303a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
304a30f8f8cSSatish Balay         }
305a30f8f8cSSatish Balay       }
306a30f8f8cSSatish Balay     } else {  /* off processor entry */
307a30f8f8cSSatish Balay       if (!baij->donotstash) {
308a30f8f8cSSatish Balay         n_loc = 0;
309a30f8f8cSSatish Balay         for (j=0; j<n; j++){
310f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
311a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
312a30f8f8cSSatish Balay           if (roworiented) {
313a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
314a30f8f8cSSatish Balay           } else {
315a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
316a30f8f8cSSatish Balay           }
317a30f8f8cSSatish Balay           n_loc++;
318a30f8f8cSSatish Balay         }
319a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
320a30f8f8cSSatish Balay       }
321a30f8f8cSSatish Balay     }
322a30f8f8cSSatish Balay   }
323a30f8f8cSSatish Balay   PetscFunctionReturn(0);
324a30f8f8cSSatish Balay }
325a30f8f8cSSatish Balay 
3264a2ae208SSatish Balay #undef __FUNCT__
327e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3281302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
329a30f8f8cSSatish Balay {
3300880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
331f15d580aSBarry Smith   const MatScalar *value;
332f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3330880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
334dfbe8321SBarry Smith   PetscErrorCode  ierr;
335899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
336899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
337899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3380880e062SHong Zhang 
339a30f8f8cSSatish Balay   PetscFunctionBegin;
3400880e062SHong Zhang   if(!barray) {
3410880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3420880e062SHong Zhang     baij->barray = barray;
3430880e062SHong Zhang   }
3440880e062SHong Zhang 
3450880e062SHong Zhang   if (roworiented) {
3460880e062SHong Zhang     stepval = (n-1)*bs;
3470880e062SHong Zhang   } else {
3480880e062SHong Zhang     stepval = (m-1)*bs;
3490880e062SHong Zhang   }
3500880e062SHong Zhang   for (i=0; i<m; i++) {
3510880e062SHong Zhang     if (im[i] < 0) continue;
3522515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35377431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3540880e062SHong Zhang #endif
3550880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3560880e062SHong Zhang       row = im[i] - rstart;
3570880e062SHong Zhang       for (j=0; j<n; j++) {
3580880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3590880e062SHong Zhang         if ((roworiented) && (n == 1)) {
360f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3610880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
362f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3630880e062SHong Zhang         } else { /* Here a copy is required */
3640880e062SHong Zhang           if (roworiented) {
3650880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3660880e062SHong Zhang           } else {
3670880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3680880e062SHong Zhang           }
3690880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3700880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3710880e062SHong Zhang               *barray++  = *value++;
3720880e062SHong Zhang             }
3730880e062SHong Zhang           }
3740880e062SHong Zhang           barray -=bs2;
3750880e062SHong Zhang         }
3760880e062SHong Zhang 
3770880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3780880e062SHong Zhang           col  = in[j] - cstart;
3790880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3800880e062SHong Zhang         }
3810880e062SHong Zhang         else if (in[j] < 0) continue;
3822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38377431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3840880e062SHong Zhang #endif
3850880e062SHong Zhang         else {
3860880e062SHong Zhang           if (mat->was_assembled) {
3870880e062SHong Zhang             if (!baij->colmap) {
388653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3890880e062SHong Zhang             }
3900880e062SHong Zhang 
3912515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3920880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3931302d50aSBarry Smith             { PetscInt data;
3940880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3950880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3960880e062SHong Zhang             }
3970880e062SHong Zhang #else
3980880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #endif
4010880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4020880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4030880e062SHong Zhang             col  = (col - 1)/bs;
4040880e062SHong Zhang #else
4050880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4060880e062SHong Zhang #endif
4070880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4080880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4090880e062SHong Zhang               col =  in[j];
4100880e062SHong Zhang             }
4110880e062SHong Zhang           }
4120880e062SHong Zhang           else col = in[j];
413e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4140880e062SHong Zhang         }
4150880e062SHong Zhang       }
4160880e062SHong Zhang     } else {
4170880e062SHong Zhang       if (!baij->donotstash) {
4180880e062SHong Zhang         if (roworiented) {
4190880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4200880e062SHong Zhang         } else {
4210880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4220880e062SHong Zhang         }
4230880e062SHong Zhang       }
4240880e062SHong Zhang     }
4250880e062SHong Zhang   }
4260880e062SHong Zhang   PetscFunctionReturn(0);
427a30f8f8cSSatish Balay }
428a30f8f8cSSatish Balay 
4294a2ae208SSatish Balay #undef __FUNCT__
4304a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4311302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
432a30f8f8cSSatish Balay {
433f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4346849ba73SBarry Smith   PetscErrorCode ierr;
435899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
436899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
437a30f8f8cSSatish Balay 
438a30f8f8cSSatish Balay   PetscFunctionBegin;
439a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
44077431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
441899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
442a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
443a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
444a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44577431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
446899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
447a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
448a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
449c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
450a30f8f8cSSatish Balay         } else {
451a30f8f8cSSatish Balay           if (!baij->colmap) {
452653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
453a30f8f8cSSatish Balay           }
454a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
455a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
456a30f8f8cSSatish Balay           data --;
457a30f8f8cSSatish Balay #else
458a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
459a30f8f8cSSatish Balay #endif
460a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
461a30f8f8cSSatish Balay           else {
462a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
463e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
464a30f8f8cSSatish Balay           }
465a30f8f8cSSatish Balay         }
466a30f8f8cSSatish Balay       }
467a30f8f8cSSatish Balay     } else {
46829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
469a30f8f8cSSatish Balay     }
470a30f8f8cSSatish Balay   }
471a30f8f8cSSatish Balay  PetscFunctionReturn(0);
472a30f8f8cSSatish Balay }
473a30f8f8cSSatish Balay 
4744a2ae208SSatish Balay #undef __FUNCT__
4754a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
476dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
477a30f8f8cSSatish Balay {
478a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
479dfbe8321SBarry Smith   PetscErrorCode ierr;
480a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
481a30f8f8cSSatish Balay 
482a30f8f8cSSatish Balay   PetscFunctionBegin;
483a30f8f8cSSatish Balay   if (baij->size == 1) {
484a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
485a30f8f8cSSatish Balay   } else {
486a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
487f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
489a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
490a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
491a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
492d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
493a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
494a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4950b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4960b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4970b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4980b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
499899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
500899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5010b8dc8d2SHong Zhang       MatScalar    *v;
5020b8dc8d2SHong Zhang 
503899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
504899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
505899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5060b8dc8d2SHong Zhang       /* Amat */
5070b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5080b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5090b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5100b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5110b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5120b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5130b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5140b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5150b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5160b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5170b8dc8d2SHong Zhang               /* non-diagonal block */
5180b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5190b8dc8d2SHong Zhang             }
5200b8dc8d2SHong Zhang           }
5210b8dc8d2SHong Zhang         }
5220b8dc8d2SHong Zhang       }
5230b8dc8d2SHong Zhang       /* Bmat */
5240b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5250b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5260b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5270b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5280b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5290b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5300b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5310b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5320b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5330b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5340b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5350b8dc8d2SHong Zhang             }
5360b8dc8d2SHong Zhang           }
5370b8dc8d2SHong Zhang         }
5380b8dc8d2SHong Zhang       }
539899cda47SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5400b8dc8d2SHong Zhang       *norm = 0.0;
541899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5420b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5430b8dc8d2SHong Zhang       }
5440b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
545a30f8f8cSSatish Balay     } else {
54629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
547a30f8f8cSSatish Balay     }
548a30f8f8cSSatish Balay   }
549a30f8f8cSSatish Balay   PetscFunctionReturn(0);
550a30f8f8cSSatish Balay }
551a30f8f8cSSatish Balay 
5524a2ae208SSatish Balay #undef __FUNCT__
5534a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
554dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
555a30f8f8cSSatish Balay {
556a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
557dfbe8321SBarry Smith   PetscErrorCode ierr;
5581302d50aSBarry Smith   PetscInt       nstash,reallocs;
559a30f8f8cSSatish Balay   InsertMode     addv;
560a30f8f8cSSatish Balay 
561a30f8f8cSSatish Balay   PetscFunctionBegin;
562a30f8f8cSSatish Balay   if (baij->donotstash) {
563a30f8f8cSSatish Balay     PetscFunctionReturn(0);
564a30f8f8cSSatish Balay   }
565a30f8f8cSSatish Balay 
566a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
567a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
568a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
572a30f8f8cSSatish Balay 
573899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
574899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
576ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
577a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
578ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
579a30f8f8cSSatish Balay   PetscFunctionReturn(0);
580a30f8f8cSSatish Balay }
581a30f8f8cSSatish Balay 
5824a2ae208SSatish Balay #undef __FUNCT__
5834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
584dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
585a30f8f8cSSatish Balay {
586a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
587a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5886849ba73SBarry Smith   PetscErrorCode ierr;
58913f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5901302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
59113f74950SBarry Smith   PetscMPIInt    n;
592a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
593a30f8f8cSSatish Balay   MatScalar      *val;
594a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
595a30f8f8cSSatish Balay 
59691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay 
599a30f8f8cSSatish Balay   if (!baij->donotstash) {
600a30f8f8cSSatish Balay     while (1) {
601a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
602a30f8f8cSSatish Balay       if (!flg) break;
603a30f8f8cSSatish Balay 
604a30f8f8cSSatish Balay       for (i=0; i<n;) {
605a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
606a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
607a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
608a30f8f8cSSatish Balay         else       ncols = n-i;
609a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
610a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
611a30f8f8cSSatish Balay         i = j;
612a30f8f8cSSatish Balay       }
613a30f8f8cSSatish Balay     }
614a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
615a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
616a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
617a30f8f8cSSatish Balay        restore the original flags */
618a30f8f8cSSatish Balay     r1 = baij->roworiented;
619a30f8f8cSSatish Balay     r2 = a->roworiented;
62091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
621a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
622a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
624a30f8f8cSSatish Balay     while (1) {
625a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       if (!flg) break;
627a30f8f8cSSatish Balay 
628a30f8f8cSSatish Balay       for (i=0; i<n;) {
629a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
630a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
631a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
632a30f8f8cSSatish Balay         else       ncols = n-i;
633a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
634a30f8f8cSSatish Balay         i = j;
635a30f8f8cSSatish Balay       }
636a30f8f8cSSatish Balay     }
637a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
638a30f8f8cSSatish Balay     baij->roworiented = r1;
639a30f8f8cSSatish Balay     a->roworiented    = r2;
64091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
641a30f8f8cSSatish Balay   }
642a30f8f8cSSatish Balay 
643a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
645a30f8f8cSSatish Balay 
646a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
647a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
648a30f8f8cSSatish Balay   /*
649a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
650a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
651a30f8f8cSSatish Balay   */
652a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
653a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
654a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
655c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
656a30f8f8cSSatish Balay     }
657a30f8f8cSSatish Balay   }
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
66040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
661a30f8f8cSSatish Balay   }
66291c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
663a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
665a30f8f8cSSatish Balay 
666a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
667a30f8f8cSSatish Balay   baij->rowvalues = 0;
6685222a1afSHong Zhang 
669a30f8f8cSSatish Balay   PetscFunctionReturn(0);
670a30f8f8cSSatish Balay }
671a30f8f8cSSatish Balay 
6724a2ae208SSatish Balay #undef __FUNCT__
6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
675a30f8f8cSSatish Balay {
676a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
677dfbe8321SBarry Smith   PetscErrorCode    ierr;
678899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6791302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
68032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
681b0a32e0cSBarry Smith   PetscViewer       sviewer;
682f3ef73ceSBarry Smith   PetscViewerFormat format;
683a30f8f8cSSatish Balay 
684a30f8f8cSSatish Balay   PetscFunctionBegin;
68532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
686fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68732077d6dSBarry Smith   if (iascii) {
688b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
689456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
690a30f8f8cSSatish Balay       MatInfo info;
691a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
694899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
695899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
698a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
700b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
701a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
702a30f8f8cSSatish Balay       PetscFunctionReturn(0);
703fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
705a30f8f8cSSatish Balay       PetscFunctionReturn(0);
706c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
707c1490034SHong Zhang       PetscFunctionReturn(0);
708a30f8f8cSSatish Balay     }
709a30f8f8cSSatish Balay   }
710a30f8f8cSSatish Balay 
711a30f8f8cSSatish Balay   if (isdraw) {
712b0a32e0cSBarry Smith     PetscDraw       draw;
713a30f8f8cSSatish Balay     PetscTruth isnull;
714b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
715b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay 
718a30f8f8cSSatish Balay   if (size == 1) {
719e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
721a30f8f8cSSatish Balay   } else {
722a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
723a30f8f8cSSatish Balay     Mat         A;
72465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72565d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
726899cda47SBarry Smith     PetscInt         M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
727a30f8f8cSSatish Balay     MatScalar   *a;
728a30f8f8cSSatish Balay 
729f204ca49SKris Buschelman     /* Should this be the same type as mat? */
730f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
731a30f8f8cSSatish Balay     if (!rank) {
732f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
733a30f8f8cSSatish Balay     } else {
734f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
735a30f8f8cSSatish Balay     }
736f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
737899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
739a30f8f8cSSatish Balay 
740a30f8f8cSSatish Balay     /* copy over the A part */
74165d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
742a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7431302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
744a30f8f8cSSatish Balay 
745a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
746899cda47SBarry Smith       rvals[0] = mat->rmap.rstart + bs*i;
747a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
748a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
749899cda47SBarry Smith         col = mat->cmap.rstart+aj[j]*bs;
750a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
751a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
752a30f8f8cSSatish Balay           col++; a += bs;
753a30f8f8cSSatish Balay         }
754a30f8f8cSSatish Balay       }
755a30f8f8cSSatish Balay     }
756a30f8f8cSSatish Balay     /* copy over the B part */
75765d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75865d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
759a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
760899cda47SBarry Smith       rvals[0] = mat->rmap.rstart + bs;
761a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
762a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
763a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
764a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
765a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
766a30f8f8cSSatish Balay           col++; a += bs;
767a30f8f8cSSatish Balay         }
768a30f8f8cSSatish Balay       }
769a30f8f8cSSatish Balay     }
770a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
771a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
773a30f8f8cSSatish Balay     /*
774a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
775b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
776a30f8f8cSSatish Balay     */
777b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77865d70643SHong Zhang     if (!rank) {
779e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
780a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
781a30f8f8cSSatish Balay     }
782b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
783a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
784a30f8f8cSSatish Balay   }
785a30f8f8cSSatish Balay   PetscFunctionReturn(0);
786a30f8f8cSSatish Balay }
787a30f8f8cSSatish Balay 
7884a2ae208SSatish Balay #undef __FUNCT__
7894a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
790dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
791a30f8f8cSSatish Balay {
792dfbe8321SBarry Smith   PetscErrorCode ierr;
79332077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
794a30f8f8cSSatish Balay 
795a30f8f8cSSatish Balay   PetscFunctionBegin;
79632077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
797fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
798b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
799fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80032077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
801a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
802a30f8f8cSSatish Balay   } else {
8031302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
804a30f8f8cSSatish Balay   }
805a30f8f8cSSatish Balay   PetscFunctionReturn(0);
806a30f8f8cSSatish Balay }
807a30f8f8cSSatish Balay 
8084a2ae208SSatish Balay #undef __FUNCT__
8094a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
810dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
811a30f8f8cSSatish Balay {
812a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
813dfbe8321SBarry Smith   PetscErrorCode ierr;
814a30f8f8cSSatish Balay 
815a30f8f8cSSatish Balay   PetscFunctionBegin;
816a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
817899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
818a30f8f8cSSatish Balay #endif
819a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
820a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
821a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
823a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
824a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
825a30f8f8cSSatish Balay #else
82605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
827a30f8f8cSSatish Balay #endif
82805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
829a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
830a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83140781036SHong Zhang   if (baij->slvec0) {
83240781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83440781036SHong Zhang   }
83540781036SHong Zhang   if (baij->slvec1) {
83640781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83740781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83840781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
83940781036SHong Zhang   }
84040781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84105b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84305b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
844a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84505b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
846a30f8f8cSSatish Balay #endif
847*59ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
848*59ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
849899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
850a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
851901853e0SKris Buschelman 
852901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
853901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
854901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
855901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
856a30f8f8cSSatish Balay   PetscFunctionReturn(0);
857a30f8f8cSSatish Balay }
858a30f8f8cSSatish Balay 
8594a2ae208SSatish Balay #undef __FUNCT__
860a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
861dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
862a9d4b620SHong Zhang {
863a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
864dfbe8321SBarry Smith   PetscErrorCode ierr;
865899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
866a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
867a9d4b620SHong Zhang 
868a9d4b620SHong Zhang   PetscFunctionBegin;
869a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
870899cda47SBarry Smith   if (nt != A->cmap.n) {
871a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
872a9d4b620SHong Zhang   }
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang   /* diagonal part */
875a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8762dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
877a9d4b620SHong Zhang 
878a9d4b620SHong Zhang   /* subdiagonal part */
879a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
880899cda47SBarry Smith   CHKMEMQ;
881a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8821ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8831ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
884899cda47SBarry Smith   CHKMEMQ;
885a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
886899cda47SBarry Smith   CHKMEMQ;
8871ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
888a9d4b620SHong Zhang 
889899cda47SBarry Smith   CHKMEMQ;
890a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
891899cda47SBarry Smith   CHKMEMQ;
8921ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
893899cda47SBarry Smith   CHKMEMQ;
894a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
895899cda47SBarry Smith     CHKMEMQ;
896a9d4b620SHong Zhang   /* supperdiagonal part */
897a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
898899cda47SBarry Smith     CHKMEMQ;
899a9d4b620SHong Zhang   PetscFunctionReturn(0);
900a9d4b620SHong Zhang }
901a9d4b620SHong Zhang 
902a9d4b620SHong Zhang #undef __FUNCT__
90340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
904dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
905a30f8f8cSSatish Balay {
906a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
907dfbe8321SBarry Smith   PetscErrorCode ierr;
9081302d50aSBarry Smith   PetscInt       nt;
909a30f8f8cSSatish Balay 
910a30f8f8cSSatish Balay   PetscFunctionBegin;
911a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
912899cda47SBarry Smith   if (nt != A->cmap.n) {
91329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
914a30f8f8cSSatish Balay   }
915a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
916899cda47SBarry Smith   if (nt != A->rmap.N) {
91729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
918a30f8f8cSSatish Balay   }
91965d70643SHong Zhang 
920b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
921b941877fSHong Zhang   /* do diagonal part */
922b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
923b941877fSHong Zhang   /* do supperdiagonal part */
924b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
925b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
926b941877fSHong Zhang   /* do subdiagonal part */
927b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
928b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
929b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
93065d70643SHong Zhang 
931a30f8f8cSSatish Balay   PetscFunctionReturn(0);
932a30f8f8cSSatish Balay }
933a30f8f8cSSatish Balay 
9344a2ae208SSatish Balay #undef __FUNCT__
9354a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
937a30f8f8cSSatish Balay {
938de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
939dfbe8321SBarry Smith   PetscErrorCode ierr;
940899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
941a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
942a9d4b620SHong Zhang 
943a9d4b620SHong Zhang   PetscFunctionBegin;
944a9d4b620SHong Zhang   /*
94556faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
94656faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
947a9d4b620SHong Zhang   */
948a9d4b620SHong Zhang   /* diagonal part */
949a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9502dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
951a9d4b620SHong Zhang 
952a9d4b620SHong Zhang   /* subdiagonal part */
953a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
954a9d4b620SHong Zhang 
955a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9561ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9571ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
958a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9591ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
960a9d4b620SHong Zhang 
961a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9621ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
963a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
964a9d4b620SHong Zhang 
965a9d4b620SHong Zhang   /* supperdiagonal part */
966a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
967a9d4b620SHong Zhang 
968a9d4b620SHong Zhang   PetscFunctionReturn(0);
969a9d4b620SHong Zhang }
970a9d4b620SHong Zhang 
971a9d4b620SHong Zhang #undef __FUNCT__
972a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
973dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
974a9d4b620SHong Zhang {
975a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
976dfbe8321SBarry Smith   PetscErrorCode ierr;
977a30f8f8cSSatish Balay 
978a30f8f8cSSatish Balay   PetscFunctionBegin;
979b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
980b941877fSHong Zhang   /* do diagonal part */
981b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
982b941877fSHong Zhang   /* do supperdiagonal part */
983b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
984de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
985de8b6608SHong Zhang 
986b941877fSHong Zhang   /* do subdiagonal part */
987a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
988a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
989a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
990aa482183SHong Zhang 
991a30f8f8cSSatish Balay   PetscFunctionReturn(0);
992a30f8f8cSSatish Balay }
993a30f8f8cSSatish Balay 
994a30f8f8cSSatish Balay /*
995a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
996a30f8f8cSSatish Balay    diagonal block
997a30f8f8cSSatish Balay */
9984a2ae208SSatish Balay #undef __FUNCT__
9994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1000dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1001a30f8f8cSSatish Balay {
1002a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1003dfbe8321SBarry Smith   PetscErrorCode ierr;
1004a30f8f8cSSatish Balay 
1005a30f8f8cSSatish Balay   PetscFunctionBegin;
1006899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1007a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1008a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1009a30f8f8cSSatish Balay }
1010a30f8f8cSSatish Balay 
10114a2ae208SSatish Balay #undef __FUNCT__
10124a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1013f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1014a30f8f8cSSatish Balay {
1015a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1016dfbe8321SBarry Smith   PetscErrorCode ierr;
1017a30f8f8cSSatish Balay 
1018a30f8f8cSSatish Balay   PetscFunctionBegin;
1019f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1020f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1021a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10261302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1027a30f8f8cSSatish Balay {
1028d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1029d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1030d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1031899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1032899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1033899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1034d0d4cfc2SHong Zhang 
1035a30f8f8cSSatish Balay   PetscFunctionBegin;
1036d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1037d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1038d0d4cfc2SHong Zhang 
1039d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1040d0d4cfc2SHong Zhang     /*
1041d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1042d0d4cfc2SHong Zhang     */
1043d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1044d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1045d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1046d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1047d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1048d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1049d0d4cfc2SHong Zhang     }
1050d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1051d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1052d0d4cfc2SHong Zhang   }
1053d0d4cfc2SHong Zhang 
1054d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1055d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1056d0d4cfc2SHong Zhang 
1057d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1058d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1059d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1060d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1061d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1062d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1063d0d4cfc2SHong Zhang 
1064d0d4cfc2SHong Zhang   cmap  = mat->garray;
1065d0d4cfc2SHong Zhang   if (v  || idx) {
1066d0d4cfc2SHong Zhang     if (nztot) {
1067d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1068d0d4cfc2SHong Zhang       PetscInt imark = -1;
1069d0d4cfc2SHong Zhang       if (v) {
1070d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1071d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1072d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1073d0d4cfc2SHong Zhang           else break;
1074d0d4cfc2SHong Zhang         }
1075d0d4cfc2SHong Zhang         imark = i;
1076d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1077d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1078d0d4cfc2SHong Zhang       }
1079d0d4cfc2SHong Zhang       if (idx) {
1080d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1081d0d4cfc2SHong Zhang         if (imark > -1) {
1082d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1083d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1084d0d4cfc2SHong Zhang           }
1085d0d4cfc2SHong Zhang         } else {
1086d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1087d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1088d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1089d0d4cfc2SHong Zhang             else break;
1090d0d4cfc2SHong Zhang           }
1091d0d4cfc2SHong Zhang           imark = i;
1092d0d4cfc2SHong Zhang         }
1093d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1094d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1095d0d4cfc2SHong Zhang       }
1096d0d4cfc2SHong Zhang     } else {
1097d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1098d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1099d0d4cfc2SHong Zhang     }
1100d0d4cfc2SHong Zhang   }
1101d0d4cfc2SHong Zhang   *nz = nztot;
1102d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1103d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1104a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1105a30f8f8cSSatish Balay }
1106a30f8f8cSSatish Balay 
11074a2ae208SSatish Balay #undef __FUNCT__
11084a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11091302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1110a30f8f8cSSatish Balay {
1111a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1112a30f8f8cSSatish Balay 
1113a30f8f8cSSatish Balay   PetscFunctionBegin;
1114abc0a331SBarry Smith   if (!baij->getrowactive) {
1115abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1116a30f8f8cSSatish Balay   }
1117a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1118a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1119a30f8f8cSSatish Balay }
1120a30f8f8cSSatish Balay 
11214a2ae208SSatish Balay #undef __FUNCT__
1122d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1123d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1124d0d4cfc2SHong Zhang {
1125d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1126d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1127d0d4cfc2SHong Zhang 
1128d0d4cfc2SHong Zhang   PetscFunctionBegin;
1129d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1130d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1131d0d4cfc2SHong Zhang }
1132d0d4cfc2SHong Zhang #undef __FUNCT__
1133d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1134d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1135d0d4cfc2SHong Zhang {
1136d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1137d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1138d0d4cfc2SHong Zhang 
1139d0d4cfc2SHong Zhang   PetscFunctionBegin;
1140d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1141d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1142d0d4cfc2SHong Zhang }
1143d0d4cfc2SHong Zhang 
1144d0d4cfc2SHong Zhang #undef __FUNCT__
114599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
114799cafbc1SBarry Smith {
114899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
114999cafbc1SBarry Smith   PetscErrorCode ierr;
115099cafbc1SBarry Smith 
115199cafbc1SBarry Smith   PetscFunctionBegin;
115299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115499cafbc1SBarry Smith   PetscFunctionReturn(0);
115599cafbc1SBarry Smith }
115699cafbc1SBarry Smith 
115799cafbc1SBarry Smith #undef __FUNCT__
115899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
115999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
116099cafbc1SBarry Smith {
116199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
116299cafbc1SBarry Smith   PetscErrorCode ierr;
116399cafbc1SBarry Smith 
116499cafbc1SBarry Smith   PetscFunctionBegin;
116599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
116799cafbc1SBarry Smith   PetscFunctionReturn(0);
116899cafbc1SBarry Smith }
116999cafbc1SBarry Smith 
117099cafbc1SBarry Smith #undef __FUNCT__
11714a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1172dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1173a30f8f8cSSatish Balay {
1174a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1175dfbe8321SBarry Smith   PetscErrorCode ierr;
1176a30f8f8cSSatish Balay 
1177a30f8f8cSSatish Balay   PetscFunctionBegin;
1178a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1179a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1180a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1181a30f8f8cSSatish Balay }
1182a30f8f8cSSatish Balay 
11834a2ae208SSatish Balay #undef __FUNCT__
11844a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1185dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1186a30f8f8cSSatish Balay {
1187a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1188a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1189dfbe8321SBarry Smith   PetscErrorCode ierr;
1190a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1191a30f8f8cSSatish Balay 
1192a30f8f8cSSatish Balay   PetscFunctionBegin;
1193899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1194a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1195a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1196a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1197a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1198a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1199a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1200a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1201a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1202a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1203a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1204a30f8f8cSSatish Balay     info->memory       = isend[3];
1205a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1206a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1207d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1208a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1209a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1210a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1211a30f8f8cSSatish Balay     info->memory       = irecv[3];
1212a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1213a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1214d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1215a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1216a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1217a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1218a30f8f8cSSatish Balay     info->memory       = irecv[3];
1219a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1220a30f8f8cSSatish Balay   } else {
122177431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1222a30f8f8cSSatish Balay   }
1223899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1224899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1225899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1226899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1227a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1228a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1229a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1235dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1238d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1239dfbe8321SBarry Smith   PetscErrorCode ierr;
1240a30f8f8cSSatish Balay 
1241a30f8f8cSSatish Balay   PetscFunctionBegin;
1242e98b92d7SKris Buschelman   switch (op) {
1243e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1244e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1245e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1246e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1247e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1248e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1249e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1250a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1251a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1252e98b92d7SKris Buschelman     break;
1253e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1254a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1255a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1256a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1257e98b92d7SKris Buschelman     break;
1258e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1259e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1260e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1261ae15b995SBarry Smith     ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr);
1262e98b92d7SKris Buschelman     break;
1263e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1264a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1265a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1266a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1267e98b92d7SKris Buschelman     break;
1268e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1269a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1270e98b92d7SKris Buschelman     break;
1271e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
127229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1273e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1274a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1275e98b92d7SKris Buschelman     break;
12769a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12779a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12789a4540c5SBarry Smith   case MAT_HERMITIAN:
12799a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
128077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
128177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12829a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12839a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12849a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
128577e54ba9SKris Buschelman     break;
1286d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
1287d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_TRUE;
1288d0d4cfc2SHong Zhang     break;
1289d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
1290d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_FALSE;
1291d0d4cfc2SHong Zhang     break;
1292d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
1293d0d4cfc2SHong Zhang     aA->getrow_utriangular = PETSC_TRUE;
1294d0d4cfc2SHong Zhang     break;
1295e98b92d7SKris Buschelman   default:
129629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1297a30f8f8cSSatish Balay   }
1298a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1299a30f8f8cSSatish Balay }
1300a30f8f8cSSatish Balay 
13014a2ae208SSatish Balay #undef __FUNCT__
13028115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1303dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1304a30f8f8cSSatish Balay {
1305dfbe8321SBarry Smith   PetscErrorCode ierr;
1306a30f8f8cSSatish Balay   PetscFunctionBegin;
1307999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13088115998fSBarry Smith   PetscFunctionReturn(0);
1309a30f8f8cSSatish Balay }
1310a30f8f8cSSatish Balay 
13114a2ae208SSatish Balay #undef __FUNCT__
13124a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1313dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1314a30f8f8cSSatish Balay {
1315a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1316a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1317dfbe8321SBarry Smith   PetscErrorCode ierr;
13185e90f9d9SHong Zhang   PetscInt       nv,m,n;
1319b3bf805bSHong Zhang   PetscTruth     flg;
1320a30f8f8cSSatish Balay 
1321a30f8f8cSSatish Balay   PetscFunctionBegin;
1322a30f8f8cSSatish Balay   if (ll != rr){
1323b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1324b3bf805bSHong Zhang     if (!flg)
132529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1326a30f8f8cSSatish Balay   }
1327b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1328b3bf805bSHong Zhang 
13295e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13305e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1331b3bf805bSHong Zhang 
13325e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13335e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13345e90f9d9SHong Zhang 
1335a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
13365e90f9d9SHong Zhang 
13375e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1338a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13395e90f9d9SHong Zhang 
13405e90f9d9SHong Zhang   /* scale the diagonal part */
1341a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1342a30f8f8cSSatish Balay 
13435e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1344a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1345a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1346a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1347a30f8f8cSSatish Balay }
1348a30f8f8cSSatish Balay 
13494a2ae208SSatish Balay #undef __FUNCT__
13504a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1351dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1352a30f8f8cSSatish Balay {
1353a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1354a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
13551302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1356dfbe8321SBarry Smith   PetscErrorCode    ierr;
1357a30f8f8cSSatish Balay 
1358a30f8f8cSSatish Balay   PetscFunctionBegin;
1359a30f8f8cSSatish Balay   if (!a->rank) {
1360a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1361a30f8f8cSSatish Balay   }
13621302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1363a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1364a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1365a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1366a30f8f8cSSatish Balay }
1367a30f8f8cSSatish Balay 
13684a2ae208SSatish Balay #undef __FUNCT__
13694a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1370dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1371a30f8f8cSSatish Balay {
1372f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1373dfbe8321SBarry Smith   PetscErrorCode ierr;
1374a30f8f8cSSatish Balay 
1375a30f8f8cSSatish Balay   PetscFunctionBegin;
1376a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1377a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1378a30f8f8cSSatish Balay }
1379a30f8f8cSSatish Balay 
13806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1381a30f8f8cSSatish Balay 
13824a2ae208SSatish Balay #undef __FUNCT__
13834a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1384dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1385a30f8f8cSSatish Balay {
1386a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1387a30f8f8cSSatish Balay   Mat            a,b,c,d;
1388a30f8f8cSSatish Balay   PetscTruth     flg;
1389dfbe8321SBarry Smith   PetscErrorCode ierr;
1390a30f8f8cSSatish Balay 
1391a30f8f8cSSatish Balay   PetscFunctionBegin;
1392a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1393a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1394a30f8f8cSSatish Balay 
1395a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1396abc0a331SBarry Smith   if (flg) {
1397a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1398a30f8f8cSSatish Balay   }
1399a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1400a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1401a30f8f8cSSatish Balay }
1402a30f8f8cSSatish Balay 
14034a2ae208SSatish Balay #undef __FUNCT__
14043c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
14053c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
14063c896bc6SHong Zhang {
14073c896bc6SHong Zhang   PetscErrorCode ierr;
14083c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
14093c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
14103c896bc6SHong Zhang 
14113c896bc6SHong Zhang   PetscFunctionBegin;
14123c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
14133c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1414d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
14153c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1416d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14173c896bc6SHong Zhang   } else {
14183c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14193c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14203c896bc6SHong Zhang   }
14213c896bc6SHong Zhang   PetscFunctionReturn(0);
14223c896bc6SHong Zhang }
14233c896bc6SHong Zhang 
14243c896bc6SHong Zhang #undef __FUNCT__
14254a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1426dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1427273d9f13SBarry Smith {
1428dfbe8321SBarry Smith   PetscErrorCode ierr;
1429273d9f13SBarry Smith 
1430273d9f13SBarry Smith   PetscFunctionBegin;
14317edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1432273d9f13SBarry Smith   PetscFunctionReturn(0);
1433273d9f13SBarry Smith }
1434a5e6ed63SBarry Smith 
14354fe895cdSHong Zhang #include "petscblaslapack.h"
14364fe895cdSHong Zhang #undef __FUNCT__
14374fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14384fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14394fe895cdSHong Zhang {
14404fe895cdSHong Zhang   PetscErrorCode ierr;
14414fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14424fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14434fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14444fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14454fe895cdSHong Zhang 
14464fe895cdSHong Zhang   PetscFunctionBegin;
14474fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14484fe895cdSHong Zhang     PetscScalar alpha = a;
14494fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14504fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14514fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
14524fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14534fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14544fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14554fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
14564fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14574fe895cdSHong Zhang   } else {
1458d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14594fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1460d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14614fe895cdSHong Zhang   }
14624fe895cdSHong Zhang   PetscFunctionReturn(0);
14634fe895cdSHong Zhang }
14644fe895cdSHong Zhang 
1465a5e6ed63SBarry Smith #undef __FUNCT__
1466a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14671302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1468a5e6ed63SBarry Smith {
14696849ba73SBarry Smith   PetscErrorCode ierr;
14701302d50aSBarry Smith   PetscInt       i;
1471a5e6ed63SBarry Smith   PetscTruth     flg;
1472a5e6ed63SBarry Smith 
14736849ba73SBarry Smith   PetscFunctionBegin;
1474a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1475a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1476a5e6ed63SBarry Smith     if (!flg) {
14771302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1478a5e6ed63SBarry Smith     }
1479a5e6ed63SBarry Smith   }
1480a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1481a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1482a5e6ed63SBarry Smith }
1483a5e6ed63SBarry Smith 
1484a5e6ed63SBarry Smith 
1485a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1486a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1487a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1488a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1489a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1490a9d4b620SHong Zhang        MatMult_MPISBAIJ,
149197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1492431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1493431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
149797304618SKris Buschelman /*10*/ 0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        0,
15002798e883SHong Zhang        MatRelax_MPISBAIJ,
1501a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
150297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1503a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1504a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1505a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1506a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
150797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1508a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1509a30f8f8cSSatish Balay        0,
1510a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1511a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1512dcf5cc72SBarry Smith /*25*/ 0,
1513a30f8f8cSSatish Balay        0,
1514a30f8f8cSSatish Balay        0,
1515a30f8f8cSSatish Balay        0,
1516a30f8f8cSSatish Balay        0,
151797304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1518b5df2d14SHong Zhang        0,
1519a30f8f8cSSatish Balay        0,
1520a30f8f8cSSatish Balay        0,
1521a30f8f8cSSatish Balay        0,
152297304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1523a30f8f8cSSatish Balay        0,
1524a30f8f8cSSatish Balay        0,
1525a30f8f8cSSatish Balay        0,
1526a30f8f8cSSatish Balay        0,
15274fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1528a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1529d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1530a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
15313c896bc6SHong Zhang        MatCopy_MPISBAIJ,
153297304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1533a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1534a30f8f8cSSatish Balay        0,
1535a30f8f8cSSatish Balay        0,
1536a30f8f8cSSatish Balay        0,
1537521d7252SBarry Smith /*50*/ 0,
1538a30f8f8cSSatish Balay        0,
1539a30f8f8cSSatish Balay        0,
1540a30f8f8cSSatish Balay        0,
1541a30f8f8cSSatish Balay        0,
154297304618SKris Buschelman /*55*/ 0,
1543a30f8f8cSSatish Balay        0,
1544a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1545a30f8f8cSSatish Balay        0,
1546a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
154797304618SKris Buschelman /*60*/ 0,
1548a30f8f8cSSatish Balay        0,
1549a30f8f8cSSatish Balay        0,
1550357abbc8SBarry Smith        0,
155124d5174aSHong Zhang        0,
155297304618SKris Buschelman /*65*/ 0,
155324d5174aSHong Zhang        0,
155424d5174aSHong Zhang        0,
155524d5174aSHong Zhang        0,
155624d5174aSHong Zhang        0,
155797304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
155824d5174aSHong Zhang        0,
155997304618SKris Buschelman        0,
156097304618SKris Buschelman        0,
156197304618SKris Buschelman        0,
156297304618SKris Buschelman /*75*/ 0,
156397304618SKris Buschelman        0,
156497304618SKris Buschelman        0,
156597304618SKris Buschelman        0,
156697304618SKris Buschelman        0,
156797304618SKris Buschelman /*80*/ 0,
156897304618SKris Buschelman        0,
156997304618SKris Buschelman        0,
157097304618SKris Buschelman        0,
1571865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1572865e5f61SKris Buschelman /*85*/ 0,
1573865e5f61SKris Buschelman        0,
1574865e5f61SKris Buschelman        0,
1575865e5f61SKris Buschelman        0,
1576865e5f61SKris Buschelman        0,
1577865e5f61SKris Buschelman /*90*/ 0,
1578865e5f61SKris Buschelman        0,
1579865e5f61SKris Buschelman        0,
1580865e5f61SKris Buschelman        0,
1581865e5f61SKris Buschelman        0,
1582865e5f61SKris Buschelman /*95*/ 0,
1583865e5f61SKris Buschelman        0,
1584865e5f61SKris Buschelman        0,
158599cafbc1SBarry Smith        0,
158699cafbc1SBarry Smith        0,
158799cafbc1SBarry Smith /*100*/0,
158899cafbc1SBarry Smith        0,
158999cafbc1SBarry Smith        0,
159099cafbc1SBarry Smith        0,
159199cafbc1SBarry Smith        0,
159299cafbc1SBarry Smith /*105*/0,
159399cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1594d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1595d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1596d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
159799cafbc1SBarry Smith };
1598a30f8f8cSSatish Balay 
1599a30f8f8cSSatish Balay 
1600a30f8f8cSSatish Balay EXTERN_C_BEGIN
16014a2ae208SSatish Balay #undef __FUNCT__
16024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1603be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1604a30f8f8cSSatish Balay {
1605a30f8f8cSSatish Balay   PetscFunctionBegin;
1606a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1607a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1608a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1609a30f8f8cSSatish Balay }
1610a30f8f8cSSatish Balay EXTERN_C_END
1611a30f8f8cSSatish Balay 
1612273d9f13SBarry Smith EXTERN_C_BEGIN
16134a2ae208SSatish Balay #undef __FUNCT__
1614a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1615be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1616a23d5eceSKris Buschelman {
1617a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1618dfbe8321SBarry Smith   PetscErrorCode ierr;
16191302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1620a23d5eceSKris Buschelman 
1621a23d5eceSKris Buschelman   PetscFunctionBegin;
1622a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1623a23d5eceSKris Buschelman 
1624a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1625a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1626a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
162777431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
162877431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1629899cda47SBarry Smith 
1630899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
1631899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
1632899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
1633899cda47SBarry Smith 
1634a23d5eceSKris Buschelman   if (d_nnz) {
1635899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
163677431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1637a23d5eceSKris Buschelman     }
1638a23d5eceSKris Buschelman   }
1639a23d5eceSKris Buschelman   if (o_nnz) {
1640899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
164177431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1642a23d5eceSKris Buschelman     }
1643a23d5eceSKris Buschelman   }
1644a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1645a23d5eceSKris Buschelman 
1646a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1647899cda47SBarry Smith   mbs = B->rmap.n/bs;
1648899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1649899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1650899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1651a23d5eceSKris Buschelman   }
1652a23d5eceSKris Buschelman 
1653899cda47SBarry Smith   B->rmap.bs  = bs;
1654a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1655a23d5eceSKris Buschelman   b->mbs = mbs;
1656a23d5eceSKris Buschelman   b->nbs = mbs;
1657a23d5eceSKris Buschelman   b->Mbs = Mbs;
1658a23d5eceSKris Buschelman   b->Nbs = Mbs;
1659a23d5eceSKris Buschelman 
1660a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1661899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1662a23d5eceSKris Buschelman   }
1663899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1664899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1665a23d5eceSKris Buschelman 
1666899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1667899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1668a23d5eceSKris Buschelman 
1669f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1670899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16719c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1672c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
167352e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16749c097c71SKris Buschelman 
1675f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1676899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16774aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1678589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
167952e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1680a23d5eceSKris Buschelman 
1681a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1682a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1683a23d5eceSKris Buschelman 
1684a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1685a23d5eceSKris Buschelman }
1686a23d5eceSKris Buschelman EXTERN_C_END
1687a23d5eceSKris Buschelman 
16880bad9183SKris Buschelman /*MC
1689fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16900bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16910bad9183SKris Buschelman 
16920bad9183SKris Buschelman    Options Database Keys:
16930bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16940bad9183SKris Buschelman 
16950bad9183SKris Buschelman   Level: beginner
16960bad9183SKris Buschelman 
16970bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16980bad9183SKris Buschelman M*/
16990bad9183SKris Buschelman 
1700a23d5eceSKris Buschelman EXTERN_C_BEGIN
1701a23d5eceSKris Buschelman #undef __FUNCT__
17024a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1703be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1704b5df2d14SHong Zhang {
1705b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1706dfbe8321SBarry Smith   PetscErrorCode ierr;
1707b5df2d14SHong Zhang   PetscTruth     flg;
1708b5df2d14SHong Zhang 
1709b5df2d14SHong Zhang   PetscFunctionBegin;
1710b5df2d14SHong Zhang 
1711b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1712b0a32e0cSBarry Smith   B->data = (void*)b;
1713b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1714b5df2d14SHong Zhang 
1715b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1716b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1717b5df2d14SHong Zhang   B->mapping    = 0;
1718b5df2d14SHong Zhang   B->factor     = 0;
1719b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1720b5df2d14SHong Zhang 
1721b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1722b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1723b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1724b5df2d14SHong Zhang 
1725b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1726899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1727b5df2d14SHong Zhang 
1728b5df2d14SHong Zhang   /* build cache for off array entries formed */
1729b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1730b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1731b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1732b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1733b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1734b5df2d14SHong Zhang 
1735f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1736b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
173764a35ccbSBarry Smith   b->setvalueslen     = 0;
1738b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1739b5df2d14SHong Zhang #endif
1740b5df2d14SHong Zhang 
1741b5df2d14SHong Zhang   /* stuff used in block assembly */
1742b5df2d14SHong Zhang   b->barray       = 0;
1743b5df2d14SHong Zhang 
1744b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1745b5df2d14SHong Zhang   b->lvec         = 0;
1746b5df2d14SHong Zhang   b->Mvctx        = 0;
174740781036SHong Zhang   b->slvec0       = 0;
174840781036SHong Zhang   b->slvec0b      = 0;
174940781036SHong Zhang   b->slvec1       = 0;
175040781036SHong Zhang   b->slvec1a      = 0;
175140781036SHong Zhang   b->slvec1b      = 0;
175240781036SHong Zhang   b->sMvctx       = 0;
1753b5df2d14SHong Zhang 
1754b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1755b5df2d14SHong Zhang   b->rowindices   = 0;
1756b5df2d14SHong Zhang   b->rowvalues    = 0;
1757b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1758b5df2d14SHong Zhang 
1759b5df2d14SHong Zhang   /* hash table stuff */
1760b5df2d14SHong Zhang   b->ht           = 0;
1761b5df2d14SHong Zhang   b->hd           = 0;
1762b5df2d14SHong Zhang   b->ht_size      = 0;
1763b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1764b5df2d14SHong Zhang   b->ht_fact      = 0;
1765b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1766b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1767b5df2d14SHong Zhang 
1768*59ffdab8SBarry Smith   b->in_loc       = 0;
1769*59ffdab8SBarry Smith   b->v_loc        = 0;
1770*59ffdab8SBarry Smith   b->n_loc        = 0;
1771e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1772b5df2d14SHong Zhang   if (flg) {
1773f6275e2eSBarry Smith     PetscReal fact = 1.39;
1774b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1775e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1776b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1777b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1778ae15b995SBarry Smith     ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1779b5df2d14SHong Zhang   }
1780b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1781b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1782b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1783b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1784b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1785b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1786b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1787b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1788b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1789a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1790a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1791a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
179223ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
179323ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
179423ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
179523ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1796b5df2d14SHong Zhang   PetscFunctionReturn(0);
1797b5df2d14SHong Zhang }
1798273d9f13SBarry Smith EXTERN_C_END
1799b5df2d14SHong Zhang 
1800209238afSKris Buschelman /*MC
1801002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1802209238afSKris Buschelman 
1803209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1804209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1805209238afSKris Buschelman 
1806209238afSKris Buschelman    Options Database Keys:
1807209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1808209238afSKris Buschelman 
1809209238afSKris Buschelman   Level: beginner
1810209238afSKris Buschelman 
1811209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1812209238afSKris Buschelman M*/
1813209238afSKris Buschelman 
1814209238afSKris Buschelman EXTERN_C_BEGIN
1815209238afSKris Buschelman #undef __FUNCT__
1816209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1817be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1818dfbe8321SBarry Smith {
18196849ba73SBarry Smith   PetscErrorCode ierr;
18201302d50aSBarry Smith   PetscMPIInt    size;
1821209238afSKris Buschelman 
1822209238afSKris Buschelman   PetscFunctionBegin;
1823209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1824209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1825209238afSKris Buschelman   if (size == 1) {
1826209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1827209238afSKris Buschelman   } else {
1828209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1829209238afSKris Buschelman   }
1830209238afSKris Buschelman   PetscFunctionReturn(0);
1831209238afSKris Buschelman }
1832209238afSKris Buschelman EXTERN_C_END
1833209238afSKris Buschelman 
18344a2ae208SSatish Balay #undef __FUNCT__
18354a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1836b5df2d14SHong Zhang /*@C
1837b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1838b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1839b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1840b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1841b5df2d14SHong Zhang 
1842b5df2d14SHong Zhang    Collective on Mat
1843b5df2d14SHong Zhang 
1844b5df2d14SHong Zhang    Input Parameters:
1845b5df2d14SHong Zhang +  A - the matrix
1846b5df2d14SHong Zhang .  bs   - size of blockk
1847b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1848b5df2d14SHong Zhang            submatrix  (same for all local rows)
1849b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18506d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18516d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18526d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1853b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1854b5df2d14SHong Zhang            submatrix (same for all local rows).
1855b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1856b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1857b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1858b5df2d14SHong Zhang 
1859b5df2d14SHong Zhang 
1860b5df2d14SHong Zhang    Options Database Keys:
1861b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1862b5df2d14SHong Zhang                      block calculations (much slower)
1863b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1864b5df2d14SHong Zhang 
1865b5df2d14SHong Zhang    Notes:
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1868b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1869b5df2d14SHong Zhang 
187049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
187149a6f317SBarry Smith 
1872b5df2d14SHong Zhang    Storage Information:
1873b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1874b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1875b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1876b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1877b5df2d14SHong Zhang 
1878b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1879b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1880b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1881b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1882b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1885b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1886b5df2d14SHong Zhang 
1887b5df2d14SHong Zhang .vb
1888b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1889b5df2d14SHong Zhang           -------------------
1890b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1891b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1892b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1893b5df2d14SHong Zhang           -------------------
1894b5df2d14SHong Zhang .ve
1895b5df2d14SHong Zhang 
1896b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1897b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18986d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18996d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1900b5df2d14SHong Zhang 
19016d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19026d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1903b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1904b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1905b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1906b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1907b5df2d14SHong Zhang    matrices.
1908b5df2d14SHong Zhang 
1909b5df2d14SHong Zhang    Level: intermediate
1910b5df2d14SHong Zhang 
1911b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1912b5df2d14SHong Zhang 
1913b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1914b5df2d14SHong Zhang @*/
1915be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1916b5df2d14SHong Zhang {
19171302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1918b5df2d14SHong Zhang 
1919b5df2d14SHong Zhang   PetscFunctionBegin;
1920a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1921a23d5eceSKris Buschelman   if (f) {
1922a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1923b5df2d14SHong Zhang   }
1924b5df2d14SHong Zhang   PetscFunctionReturn(0);
1925b5df2d14SHong Zhang }
1926b5df2d14SHong Zhang 
19274a2ae208SSatish Balay #undef __FUNCT__
19284a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1929a30f8f8cSSatish Balay /*@C
1930a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1931a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1932a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1933a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1934a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1935a30f8f8cSSatish Balay 
1936a30f8f8cSSatish Balay    Collective on MPI_Comm
1937a30f8f8cSSatish Balay 
1938a30f8f8cSSatish Balay    Input Parameters:
1939a30f8f8cSSatish Balay +  comm - MPI communicator
1940a30f8f8cSSatish Balay .  bs   - size of blockk
1941a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1942a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1943a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1944a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1945a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1946a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1947a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1948a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1949a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1950a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1951a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19526d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19536d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19546d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1955a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1956a30f8f8cSSatish Balay            submatrix (same for all local rows).
1957a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1958a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1959a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1960a30f8f8cSSatish Balay 
1961a30f8f8cSSatish Balay    Output Parameter:
1962a30f8f8cSSatish Balay .  A - the matrix
1963a30f8f8cSSatish Balay 
1964a30f8f8cSSatish Balay    Options Database Keys:
1965a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1966a30f8f8cSSatish Balay                      block calculations (much slower)
1967a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1968a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1969a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1970a30f8f8cSSatish Balay 
1971a30f8f8cSSatish Balay    Notes:
1972d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1973d1be2dadSMatthew Knepley 
1974a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1975a30f8f8cSSatish Balay    (possibly both).
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1978a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1979a30f8f8cSSatish Balay 
198049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
198149a6f317SBarry Smith 
1982a30f8f8cSSatish Balay    Storage Information:
1983a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1984a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1985a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1986a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1987a30f8f8cSSatish Balay 
1988a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1989a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1990a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1991a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1992a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1993a30f8f8cSSatish Balay 
1994a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1995a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1996a30f8f8cSSatish Balay 
1997a30f8f8cSSatish Balay .vb
1998a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1999a30f8f8cSSatish Balay           -------------------
2000a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2001a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2002a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2003a30f8f8cSSatish Balay           -------------------
2004a30f8f8cSSatish Balay .ve
2005a30f8f8cSSatish Balay 
2006a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2007a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20086d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20096d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2010a30f8f8cSSatish Balay 
20116d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20126d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2013a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2014a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2015a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2016a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2017a30f8f8cSSatish Balay    matrices.
2018a30f8f8cSSatish Balay 
2019a30f8f8cSSatish Balay    Level: intermediate
2020a30f8f8cSSatish Balay 
2021a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2022a30f8f8cSSatish Balay 
2023a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2024a30f8f8cSSatish Balay @*/
2025a30f8f8cSSatish Balay 
2026be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2027a30f8f8cSSatish Balay {
20286849ba73SBarry Smith   PetscErrorCode ierr;
20291302d50aSBarry Smith   PetscMPIInt    size;
2030a30f8f8cSSatish Balay 
2031a30f8f8cSSatish Balay   PetscFunctionBegin;
2032f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2033f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2034273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2035273d9f13SBarry Smith   if (size > 1) {
2036b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2037b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2038273d9f13SBarry Smith   } else {
2039273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2040273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2041273d9f13SBarry Smith   }
2042a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2043a30f8f8cSSatish Balay }
2044a30f8f8cSSatish Balay 
2045a30f8f8cSSatish Balay 
20464a2ae208SSatish Balay #undef __FUNCT__
20474a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20486849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2049a30f8f8cSSatish Balay {
2050a30f8f8cSSatish Balay   Mat            mat;
2051a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2052dfbe8321SBarry Smith   PetscErrorCode ierr;
2053899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2054387bc808SHong Zhang   PetscScalar    *array;
2055a30f8f8cSSatish Balay 
2056a30f8f8cSSatish Balay   PetscFunctionBegin;
2057a30f8f8cSSatish Balay   *newmat       = 0;
2058f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2059899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2060be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20611d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2062899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2063899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2064e1b6402fSHong Zhang 
206582327fa8SHong Zhang   mat->factor       = matin->factor;
2066273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206782327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20687fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20697fff6886SHong Zhang 
2070b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2071a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2072a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2073a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2074a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2075a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2076a30f8f8cSSatish Balay 
2077899cda47SBarry Smith 
2078a30f8f8cSSatish Balay   a->size         = oldmat->size;
2079a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2080a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2081a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2082a30f8f8cSSatish Balay   a->rowindices   = 0;
2083a30f8f8cSSatish Balay   a->rowvalues    = 0;
2084a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2085a30f8f8cSSatish Balay   a->barray       = 0;
2086899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2087899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2088899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2089899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2090a30f8f8cSSatish Balay 
2091a30f8f8cSSatish Balay   /* hash table stuff */
2092a30f8f8cSSatish Balay   a->ht           = 0;
2093a30f8f8cSSatish Balay   a->hd           = 0;
2094a30f8f8cSSatish Balay   a->ht_size      = 0;
2095a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2096a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2097a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2098a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2099a30f8f8cSSatish Balay 
2100899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2102899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay   if (oldmat->colmap) {
2104a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2105a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2106a30f8f8cSSatish Balay #else
21071302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210852e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21091302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2110a30f8f8cSSatish Balay #endif
2111a30f8f8cSSatish Balay   } else a->colmap = 0;
2112387bc808SHong Zhang 
2113a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21141302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
211552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21161302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2117a30f8f8cSSatish Balay   } else a->garray = 0;
2118a30f8f8cSSatish Balay 
2119a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2121a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
212252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
212382327fa8SHong Zhang 
212482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2128387bc808SHong Zhang 
2129387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21301ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2131387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2132387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21331ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21341ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2135387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21361ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
214052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
214152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2142387bc808SHong Zhang 
2143387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2144387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2145387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214782327fa8SHong Zhang 
2148a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2150a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
215152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2152b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2153a30f8f8cSSatish Balay   *newmat = mat;
2154a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2155a30f8f8cSSatish Balay }
2156a30f8f8cSSatish Balay 
2157a30f8f8cSSatish Balay #include "petscsys.h"
2158a30f8f8cSSatish Balay 
21594a2ae208SSatish Balay #undef __FUNCT__
21604a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2161f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2162a30f8f8cSSatish Balay {
2163a30f8f8cSSatish Balay   Mat            A;
21646849ba73SBarry Smith   PetscErrorCode ierr;
216513f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216687828ca2SBarry Smith   PetscScalar    *vals,*buf;
2167a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2168a30f8f8cSSatish Balay   MPI_Status     status;
21692fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
217013f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21712fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21721302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21731302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21741302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217513f74950SBarry Smith   int            fd;
2176a30f8f8cSSatish Balay 
2177a30f8f8cSSatish Balay   PetscFunctionBegin;
2178b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay 
2180a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2181a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   if (!rank) {
2183b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2184a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2185552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2186a30f8f8cSSatish Balay     if (header[3] < 0) {
218729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2188a30f8f8cSSatish Balay     }
2189a30f8f8cSSatish Balay   }
2190a30f8f8cSSatish Balay 
2191a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2193a30f8f8cSSatish Balay 
219429bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2195a30f8f8cSSatish Balay 
2196a30f8f8cSSatish Balay   /*
2197a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2198a30f8f8cSSatish Balay      divisible by the blocksize
2199a30f8f8cSSatish Balay   */
2200a30f8f8cSSatish Balay   Mbs        = M/bs;
2201a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2202a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2203a30f8f8cSSatish Balay   else                  Mbs++;
2204a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2205ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2206a30f8f8cSSatish Balay   }
2207a30f8f8cSSatish Balay 
2208a30f8f8cSSatish Balay   /* determine ownership of all rows */
2209a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2210a30f8f8cSSatish Balay   m          = mbs*bs;
2211a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2213a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2214a30f8f8cSSatish Balay   rowners[0] = 0;
2215a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2216a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2217a30f8f8cSSatish Balay   rstart = rowners[rank];
2218a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2219a30f8f8cSSatish Balay 
2220a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22212fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay   if (!rank) {
22231302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2224a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2226a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2228a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay   } else {
2231a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay   }
2233a30f8f8cSSatish Balay 
22340222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2235a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22361302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22371302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2238a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2239a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2240a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2241a30f8f8cSSatish Balay       }
2242a30f8f8cSSatish Balay     }
2243a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2244a30f8f8cSSatish Balay 
2245a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2246a30f8f8cSSatish Balay     maxnz = 0;
2247a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2248a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2249a30f8f8cSSatish Balay     }
22501302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay 
2252a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2253a30f8f8cSSatish Balay     nz     = procsnz[0];
22541302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay     mycols = ibuf;
2256a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2257a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2259a30f8f8cSSatish Balay 
2260a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2261a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2262a30f8f8cSSatish Balay       nz   = procsnz[i];
2263a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2264a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay     }
2266a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2267a30f8f8cSSatish Balay     if (size != 1) {
2268a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2269a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2271a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay     }
2273a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22740222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2275a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2276a30f8f8cSSatish Balay     nz = 0;
2277a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2278a30f8f8cSSatish Balay       nz += locrowlens[i];
2279a30f8f8cSSatish Balay     }
22801302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2281a30f8f8cSSatish Balay     mycols = ibuf;
2282a30f8f8cSSatish Balay     /* receive message of column indices*/
2283a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2284a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2286a30f8f8cSSatish Balay   }
2287a30f8f8cSSatish Balay 
2288a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22891302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2290a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22911302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22921302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2293a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2294a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2295a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2296a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2297a30f8f8cSSatish Balay     dcount  = 0;
2298a30f8f8cSSatish Balay     odcount = 0;
2299a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2300a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2301a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23020222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2303a30f8f8cSSatish Balay         if (!mask[tmp]) {
2304a30f8f8cSSatish Balay           mask[tmp] = 1;
23050222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23060222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2307a30f8f8cSSatish Balay         }
2308a30f8f8cSSatish Balay       }
2309a30f8f8cSSatish Balay       rowcount++;
2310a30f8f8cSSatish Balay     }
2311a30f8f8cSSatish Balay 
23120222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23130222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2314a30f8f8cSSatish Balay 
2315a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2316a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2317a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2318a30f8f8cSSatish Balay   }
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay   /* create our matrix */
2321f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2322f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
232322191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232422191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2325273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay   if (!rank) {
232887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2329a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2330a30f8f8cSSatish Balay     nz = procsnz[0];
2331a30f8f8cSSatish Balay     vals = buf;
2332a30f8f8cSSatish Balay     mycols = ibuf;
2333a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2334a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2336a30f8f8cSSatish Balay 
2337a30f8f8cSSatish Balay     /* insert into matrix */
2338a30f8f8cSSatish Balay     jj      = rstart*bs;
2339a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23407e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay       mycols += locrowlens[i];
2342a30f8f8cSSatish Balay       vals   += locrowlens[i];
2343a30f8f8cSSatish Balay       jj++;
2344a30f8f8cSSatish Balay     }
23457e06b45fSHong Zhang 
2346a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2347a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2348a30f8f8cSSatish Balay       nz   = procsnz[i];
2349a30f8f8cSSatish Balay       vals = buf;
2350a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2351a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2352a30f8f8cSSatish Balay     }
2353a30f8f8cSSatish Balay     /* the last proc */
2354a30f8f8cSSatish Balay     if (size != 1){
2355a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2356a30f8f8cSSatish Balay       vals = buf;
2357a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2359a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2360a30f8f8cSSatish Balay     }
2361a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23627e06b45fSHong Zhang 
2363a30f8f8cSSatish Balay   } else {
2364a30f8f8cSSatish Balay     /* receive numeric values */
236587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay 
2367a30f8f8cSSatish Balay     /* receive message of values*/
2368a30f8f8cSSatish Balay     vals   = buf;
2369a30f8f8cSSatish Balay     mycols = ibuf;
2370a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2373a30f8f8cSSatish Balay 
2374a30f8f8cSSatish Balay     /* insert into matrix */
2375a30f8f8cSSatish Balay     jj      = rstart*bs;
2376a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2377a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2378a30f8f8cSSatish Balay       mycols += locrowlens[i];
2379a30f8f8cSSatish Balay       vals   += locrowlens[i];
2380a30f8f8cSSatish Balay       jj++;
2381a30f8f8cSSatish Balay     }
2382a30f8f8cSSatish Balay   }
23837e06b45fSHong Zhang 
2384a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2385a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2387a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2389a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2390a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2391a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239222191285SKris Buschelman   *newmat = A;
2393a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2394a30f8f8cSSatish Balay }
2395a30f8f8cSSatish Balay 
23964a2ae208SSatish Balay #undef __FUNCT__
23974a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2398dcf5cc72SBarry Smith /*XXXXX@
2399a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2400a30f8f8cSSatish Balay 
2401a30f8f8cSSatish Balay    Input Parameters:
2402a30f8f8cSSatish Balay .  mat  - the matrix
2403a30f8f8cSSatish Balay .  fact - factor
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay    Collective on Mat
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay    Level: advanced
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay   Notes:
2410a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2413a30f8f8cSSatish Balay 
2414a30f8f8cSSatish Balay .seealso: MatSetOption()
2415dcf5cc72SBarry Smith @XXXXX*/
2416dcf5cc72SBarry Smith 
241724d5174aSHong Zhang 
24184a2ae208SSatish Balay #undef __FUNCT__
24194a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2420dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
242124d5174aSHong Zhang {
242224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2423f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2424ca54ac64SHong Zhang   PetscReal      atmp;
242587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2426dfbe8321SBarry Smith   PetscErrorCode ierr;
24271302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24281302d50aSBarry Smith   PetscMPIInt    rank,size;
24291302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
243087828ca2SBarry Smith   PetscScalar    *va;
24318a1c53f2SBarry Smith   MatScalar      *ba;
2432f4c0e9e4SHong Zhang   MPI_Status     stat;
243324d5174aSHong Zhang 
243424d5174aSHong Zhang   PetscFunctionBegin;
2435d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24361ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2437f4c0e9e4SHong Zhang 
243856faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
243956faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2440f4c0e9e4SHong Zhang 
2441899cda47SBarry Smith   bs   = A->rmap.bs;
2442f4c0e9e4SHong Zhang   mbs  = a->mbs;
2443f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2444f4c0e9e4SHong Zhang   ba   = b->a;
2445f4c0e9e4SHong Zhang   bi   = b->i;
2446f4c0e9e4SHong Zhang   bj   = b->j;
2447f4c0e9e4SHong Zhang 
2448f4c0e9e4SHong Zhang   /* find ownerships */
2449899cda47SBarry Smith   rowners_bs = A->rmap.range;
2450f4c0e9e4SHong Zhang 
2451f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245282502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2453ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2454f4c0e9e4SHong Zhang 
2455f4c0e9e4SHong Zhang   /* row_max for B */
2456b8475685SHong Zhang   if (rank != size-1){
2457f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2458f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2459f4c0e9e4SHong Zhang       brow  = bs*i;
2460f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2461f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2462f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2463ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2465f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2466f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2467ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2468ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2469f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2470f4c0e9e4SHong Zhang           }
2471f4c0e9e4SHong Zhang         }
2472f4c0e9e4SHong Zhang         bj++;
2473f4c0e9e4SHong Zhang       }
2474f4c0e9e4SHong Zhang     }
2475f4c0e9e4SHong Zhang 
2476f4c0e9e4SHong Zhang     /* send values to its owners */
2477f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2478f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2479ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
248056faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2481ca54ac64SHong Zhang     }
2482f4c0e9e4SHong Zhang   }
2483f4c0e9e4SHong Zhang 
2484f4c0e9e4SHong Zhang   /* receive values */
2485ca54ac64SHong Zhang   if (rank){
2486f4c0e9e4SHong Zhang     rvalues = work;
2487ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2488f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
248956faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2490f4c0e9e4SHong Zhang       /* process values */
2491f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2492ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2493f4c0e9e4SHong Zhang       }
2494f4c0e9e4SHong Zhang     }
2495ca54ac64SHong Zhang   }
2496f4c0e9e4SHong Zhang 
24971ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2498ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
249924d5174aSHong Zhang   PetscFunctionReturn(0);
250024d5174aSHong Zhang }
25012798e883SHong Zhang 
25022798e883SHong Zhang #undef __FUNCT__
25032798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
25041302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25052798e883SHong Zhang {
25062798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2507dfbe8321SBarry Smith   PetscErrorCode ierr;
2508899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2509efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2510ffe4fb16SHong Zhang   Vec            bb1;
2511ffe4fb16SHong Zhang 
2512ffe4fb16SHong Zhang   PetscFunctionBegin;
251377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2514ffe4fb16SHong Zhang   if (bs > 1)
2515ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2516ffe4fb16SHong Zhang 
2517ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2518ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2519ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2520ffe4fb16SHong Zhang       its--;
2521ffe4fb16SHong Zhang     }
2522ffe4fb16SHong Zhang 
2523ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2524ffe4fb16SHong Zhang     while (its--){
2525ffe4fb16SHong Zhang 
2526ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2527ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2528ffe4fb16SHong Zhang 
2529ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25301ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25311ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2532ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25331ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2534ffe4fb16SHong Zhang 
2535efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2536ffe4fb16SHong Zhang 
2537ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25381ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25391ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2540ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25411ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2542ffe4fb16SHong Zhang 
2543ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25442dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2545ffe4fb16SHong Zhang 
2546ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25471ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25481ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2549ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2550ffe4fb16SHong Zhang 
2551ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2552ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang       /* local diagonal sweep */
2555ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang     }
2557ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang   } else {
2559ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2560ffe4fb16SHong Zhang   }
2561ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2562ffe4fb16SHong Zhang }
2563ffe4fb16SHong Zhang 
2564ffe4fb16SHong Zhang #undef __FUNCT__
2565ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25661302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2567ffe4fb16SHong Zhang {
2568ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2569dfbe8321SBarry Smith   PetscErrorCode ierr;
25702798e883SHong Zhang   Vec            lvec1,bb1;
25712798e883SHong Zhang 
25722798e883SHong Zhang   PetscFunctionBegin;
257377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2574899cda47SBarry Smith   if (matin->rmap.bs > 1)
25752798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25762798e883SHong Zhang 
2577c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25782798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2579bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25802798e883SHong Zhang       its--;
25812798e883SHong Zhang     }
25822798e883SHong Zhang 
25832798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25842798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25852798e883SHong Zhang     while (its--){
25862798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25872798e883SHong Zhang 
25882798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25892798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2590efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25912798e883SHong Zhang 
25922798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25932798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25942798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25952798e883SHong Zhang 
25962798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2597efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25982798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25992798e883SHong Zhang 
26002798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26012798e883SHong Zhang 
2602c14dc6b6SHong Zhang       /* diagonal sweep */
2603bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26042798e883SHong Zhang     }
26052798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26062798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2607c14dc6b6SHong Zhang   } else {
2608c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2609c14dc6b6SHong Zhang   }
26102798e883SHong Zhang   PetscFunctionReturn(0);
26112798e883SHong Zhang }
26122798e883SHong Zhang 
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