1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16805b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19205b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 217899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 218899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 219899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 237*59ffdab8SBarry Smith PetscInt n_loc, *in_loc; 238*59ffdab8SBarry Smith MatScalar *v_loc; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if (!baij->donotstash){ 243*59ffdab8SBarry Smith if (n > baij->n_loc) { 244*59ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 245*59ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 246*59ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 247*59ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 248*59ffdab8SBarry Smith baij->n_loc = n; 249*59ffdab8SBarry Smith } 250*59ffdab8SBarry Smith in_loc = baij->in_loc; 251*59ffdab8SBarry Smith v_loc = baij->v_loc; 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 254a30f8f8cSSatish Balay for (i=0; i<m; i++) { 255a30f8f8cSSatish Balay if (im[i] < 0) continue; 2562515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 257899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 258a30f8f8cSSatish Balay #endif 259a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 260a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 261a30f8f8cSSatish Balay for (j=0; j<n; j++) { 26201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 26301b2bd88SHong Zhang if (a->ignore_ltriangular){ 26401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 26501b2bd88SHong Zhang } else { 26601b2bd88SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 26701b2bd88SHong Zhang } 26801b2bd88SHong Zhang } 269a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 270a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 271a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 272a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 273a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 274a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 275a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 276a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2772515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 278899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 279a30f8f8cSSatish Balay #endif 280a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 281a30f8f8cSSatish Balay if (mat->was_assembled) { 282a30f8f8cSSatish Balay if (!baij->colmap) { 283653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 284a30f8f8cSSatish Balay } 285a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 286a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28771730473SSatish Balay col = col - 1; 288a30f8f8cSSatish Balay #else 28971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 290a30f8f8cSSatish Balay #endif 291a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 292a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 293a30f8f8cSSatish Balay col = in[j]; 294a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 295a30f8f8cSSatish Balay B = baij->B; 296a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 297a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 298a30f8f8cSSatish Balay ba=b->a; 29971730473SSatish Balay } else col += in[j]%bs; 300a30f8f8cSSatish Balay } else col = in[j]; 301a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 302a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 303a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay } else { /* off processor entry */ 307a30f8f8cSSatish Balay if (!baij->donotstash) { 308a30f8f8cSSatish Balay n_loc = 0; 309a30f8f8cSSatish Balay for (j=0; j<n; j++){ 310f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 311a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 312a30f8f8cSSatish Balay if (roworiented) { 313a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 314a30f8f8cSSatish Balay } else { 315a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay n_loc++; 318a30f8f8cSSatish Balay } 319a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay } 322a30f8f8cSSatish Balay } 323a30f8f8cSSatish Balay PetscFunctionReturn(0); 324a30f8f8cSSatish Balay } 325a30f8f8cSSatish Balay 3264a2ae208SSatish Balay #undef __FUNCT__ 327e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3281302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 329a30f8f8cSSatish Balay { 3300880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 331f15d580aSBarry Smith const MatScalar *value; 332f15d580aSBarry Smith MatScalar *barray=baij->barray; 3330880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 334dfbe8321SBarry Smith PetscErrorCode ierr; 335899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 336899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 337899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3380880e062SHong Zhang 339a30f8f8cSSatish Balay PetscFunctionBegin; 3400880e062SHong Zhang if(!barray) { 3410880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3420880e062SHong Zhang baij->barray = barray; 3430880e062SHong Zhang } 3440880e062SHong Zhang 3450880e062SHong Zhang if (roworiented) { 3460880e062SHong Zhang stepval = (n-1)*bs; 3470880e062SHong Zhang } else { 3480880e062SHong Zhang stepval = (m-1)*bs; 3490880e062SHong Zhang } 3500880e062SHong Zhang for (i=0; i<m; i++) { 3510880e062SHong Zhang if (im[i] < 0) continue; 3522515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35377431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3540880e062SHong Zhang #endif 3550880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3560880e062SHong Zhang row = im[i] - rstart; 3570880e062SHong Zhang for (j=0; j<n; j++) { 3580880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3590880e062SHong Zhang if ((roworiented) && (n == 1)) { 360f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3610880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 362f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3630880e062SHong Zhang } else { /* Here a copy is required */ 3640880e062SHong Zhang if (roworiented) { 3650880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3660880e062SHong Zhang } else { 3670880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3680880e062SHong Zhang } 3690880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3700880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3710880e062SHong Zhang *barray++ = *value++; 3720880e062SHong Zhang } 3730880e062SHong Zhang } 3740880e062SHong Zhang barray -=bs2; 3750880e062SHong Zhang } 3760880e062SHong Zhang 3770880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3780880e062SHong Zhang col = in[j] - cstart; 3790880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3800880e062SHong Zhang } 3810880e062SHong Zhang else if (in[j] < 0) continue; 3822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38377431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3840880e062SHong Zhang #endif 3850880e062SHong Zhang else { 3860880e062SHong Zhang if (mat->was_assembled) { 3870880e062SHong Zhang if (!baij->colmap) { 388653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3890880e062SHong Zhang } 3900880e062SHong Zhang 3912515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3920880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3931302d50aSBarry Smith { PetscInt data; 3940880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3950880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3960880e062SHong Zhang } 3970880e062SHong Zhang #else 3980880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3990880e062SHong Zhang #endif 4000880e062SHong Zhang #endif 4010880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4020880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4030880e062SHong Zhang col = (col - 1)/bs; 4040880e062SHong Zhang #else 4050880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4060880e062SHong Zhang #endif 4070880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4080880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4090880e062SHong Zhang col = in[j]; 4100880e062SHong Zhang } 4110880e062SHong Zhang } 4120880e062SHong Zhang else col = in[j]; 413e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4140880e062SHong Zhang } 4150880e062SHong Zhang } 4160880e062SHong Zhang } else { 4170880e062SHong Zhang if (!baij->donotstash) { 4180880e062SHong Zhang if (roworiented) { 4190880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4200880e062SHong Zhang } else { 4210880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang } 4250880e062SHong Zhang } 4260880e062SHong Zhang PetscFunctionReturn(0); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay 4294a2ae208SSatish Balay #undef __FUNCT__ 4304a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4311302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 432a30f8f8cSSatish Balay { 433f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4346849ba73SBarry Smith PetscErrorCode ierr; 435899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 436899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 437a30f8f8cSSatish Balay 438a30f8f8cSSatish Balay PetscFunctionBegin; 439a30f8f8cSSatish Balay for (i=0; i<m; i++) { 44077431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 441899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 442a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 443a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 444a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44577431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 446899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 447a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 448a30f8f8cSSatish Balay col = idxn[j] - bscstart; 449c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 450a30f8f8cSSatish Balay } else { 451a30f8f8cSSatish Balay if (!baij->colmap) { 452653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 453a30f8f8cSSatish Balay } 454a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 455a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 456a30f8f8cSSatish Balay data --; 457a30f8f8cSSatish Balay #else 458a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 459a30f8f8cSSatish Balay #endif 460a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 461a30f8f8cSSatish Balay else { 462a30f8f8cSSatish Balay col = data + idxn[j]%bs; 463e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } 466a30f8f8cSSatish Balay } 467a30f8f8cSSatish Balay } else { 46829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 469a30f8f8cSSatish Balay } 470a30f8f8cSSatish Balay } 471a30f8f8cSSatish Balay PetscFunctionReturn(0); 472a30f8f8cSSatish Balay } 473a30f8f8cSSatish Balay 4744a2ae208SSatish Balay #undef __FUNCT__ 4754a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 476dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 477a30f8f8cSSatish Balay { 478a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 479dfbe8321SBarry Smith PetscErrorCode ierr; 480a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 481a30f8f8cSSatish Balay 482a30f8f8cSSatish Balay PetscFunctionBegin; 483a30f8f8cSSatish Balay if (baij->size == 1) { 484a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 485a30f8f8cSSatish Balay } else { 486a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 487f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 488a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 489a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 490a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 491a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 492d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 493a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 494a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4950b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4960b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4970b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4980b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 499899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 500899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 5010b8dc8d2SHong Zhang MatScalar *v; 5020b8dc8d2SHong Zhang 503899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 504899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 505899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5060b8dc8d2SHong Zhang /* Amat */ 5070b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5080b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5090b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5100b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5110b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5120b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5130b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5140b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5150b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5160b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5170b8dc8d2SHong Zhang /* non-diagonal block */ 5180b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang } 5220b8dc8d2SHong Zhang } 5230b8dc8d2SHong Zhang /* Bmat */ 5240b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5250b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5260b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5270b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5280b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5290b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5300b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5310b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5320b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5330b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5340b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 5370b8dc8d2SHong Zhang } 5380b8dc8d2SHong Zhang } 539899cda47SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5400b8dc8d2SHong Zhang *norm = 0.0; 541899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5420b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5430b8dc8d2SHong Zhang } 5440b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 545a30f8f8cSSatish Balay } else { 54629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay } 549a30f8f8cSSatish Balay PetscFunctionReturn(0); 550a30f8f8cSSatish Balay } 551a30f8f8cSSatish Balay 5524a2ae208SSatish Balay #undef __FUNCT__ 5534a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 554dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 555a30f8f8cSSatish Balay { 556a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 557dfbe8321SBarry Smith PetscErrorCode ierr; 5581302d50aSBarry Smith PetscInt nstash,reallocs; 559a30f8f8cSSatish Balay InsertMode addv; 560a30f8f8cSSatish Balay 561a30f8f8cSSatish Balay PetscFunctionBegin; 562a30f8f8cSSatish Balay if (baij->donotstash) { 563a30f8f8cSSatish Balay PetscFunctionReturn(0); 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay 566a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 567a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 568a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 572a30f8f8cSSatish Balay 573899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 574899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 576ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 578ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 579a30f8f8cSSatish Balay PetscFunctionReturn(0); 580a30f8f8cSSatish Balay } 581a30f8f8cSSatish Balay 5824a2ae208SSatish Balay #undef __FUNCT__ 5834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 584dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 585a30f8f8cSSatish Balay { 586a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 587a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5886849ba73SBarry Smith PetscErrorCode ierr; 58913f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5901302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 59113f74950SBarry Smith PetscMPIInt n; 592a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 593a30f8f8cSSatish Balay MatScalar *val; 594a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 595a30f8f8cSSatish Balay 59691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay if (!baij->donotstash) { 600a30f8f8cSSatish Balay while (1) { 601a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 602a30f8f8cSSatish Balay if (!flg) break; 603a30f8f8cSSatish Balay 604a30f8f8cSSatish Balay for (i=0; i<n;) { 605a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 606a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 607a30f8f8cSSatish Balay if (j < n) ncols = j-i; 608a30f8f8cSSatish Balay else ncols = n-i; 609a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 610a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 611a30f8f8cSSatish Balay i = j; 612a30f8f8cSSatish Balay } 613a30f8f8cSSatish Balay } 614a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 615a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 616a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 617a30f8f8cSSatish Balay restore the original flags */ 618a30f8f8cSSatish Balay r1 = baij->roworiented; 619a30f8f8cSSatish Balay r2 = a->roworiented; 62091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 621a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 622a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 62391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 624a30f8f8cSSatish Balay while (1) { 625a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 626a30f8f8cSSatish Balay if (!flg) break; 627a30f8f8cSSatish Balay 628a30f8f8cSSatish Balay for (i=0; i<n;) { 629a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 630a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 631a30f8f8cSSatish Balay if (j < n) ncols = j-i; 632a30f8f8cSSatish Balay else ncols = n-i; 633a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 634a30f8f8cSSatish Balay i = j; 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay } 637a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 638a30f8f8cSSatish Balay baij->roworiented = r1; 639a30f8f8cSSatish Balay a->roworiented = r2; 64091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay 643a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 644a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 645a30f8f8cSSatish Balay 646a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 647a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 648a30f8f8cSSatish Balay /* 649a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 650a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 651a30f8f8cSSatish Balay */ 652a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 653a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 654a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 655c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay } 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 66040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 661a30f8f8cSSatish Balay } 66291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 663a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 664a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 665a30f8f8cSSatish Balay 666a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 667a30f8f8cSSatish Balay baij->rowvalues = 0; 6685222a1afSHong Zhang 669a30f8f8cSSatish Balay PetscFunctionReturn(0); 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay 6724a2ae208SSatish Balay #undef __FUNCT__ 6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6791302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 68032077d6dSBarry Smith PetscTruth iascii,isdraw; 681b0a32e0cSBarry Smith PetscViewer sviewer; 682f3ef73ceSBarry Smith PetscViewerFormat format; 683a30f8f8cSSatish Balay 684a30f8f8cSSatish Balay PetscFunctionBegin; 68532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 686fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68732077d6dSBarry Smith if (iascii) { 688b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 690a30f8f8cSSatish Balay MatInfo info; 691a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 694899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 695899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 701a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 702a30f8f8cSSatish Balay PetscFunctionReturn(0); 703fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 705a30f8f8cSSatish Balay PetscFunctionReturn(0); 706c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 707c1490034SHong Zhang PetscFunctionReturn(0); 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay 711a30f8f8cSSatish Balay if (isdraw) { 712b0a32e0cSBarry Smith PetscDraw draw; 713a30f8f8cSSatish Balay PetscTruth isnull; 714b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay 718a30f8f8cSSatish Balay if (size == 1) { 719e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay } else { 722a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 723a30f8f8cSSatish Balay Mat A; 72465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 726899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 727a30f8f8cSSatish Balay MatScalar *a; 728a30f8f8cSSatish Balay 729f204ca49SKris Buschelman /* Should this be the same type as mat? */ 730f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 731a30f8f8cSSatish Balay if (!rank) { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 733a30f8f8cSSatish Balay } else { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 735a30f8f8cSSatish Balay } 736f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 737899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay /* copy over the A part */ 74165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 742a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7431302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 746899cda47SBarry Smith rvals[0] = mat->rmap.rstart + bs*i; 747a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 748a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 749899cda47SBarry Smith col = mat->cmap.rstart+aj[j]*bs; 750a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 751a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 752a30f8f8cSSatish Balay col++; a += bs; 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay } 755a30f8f8cSSatish Balay } 756a30f8f8cSSatish Balay /* copy over the B part */ 75765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760899cda47SBarry Smith rvals[0] = mat->rmap.rstart + bs; 761a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 762a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 763a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 764a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 765a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 766a30f8f8cSSatish Balay col++; a += bs; 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 771a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 772a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 773a30f8f8cSSatish Balay /* 774a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 775b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 776a30f8f8cSSatish Balay */ 777b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77865d70643SHong Zhang if (!rank) { 779e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 780a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 781a30f8f8cSSatish Balay } 782b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 783a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay PetscFunctionReturn(0); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 7884a2ae208SSatish Balay #undef __FUNCT__ 7894a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 790dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 791a30f8f8cSSatish Balay { 792dfbe8321SBarry Smith PetscErrorCode ierr; 79332077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 794a30f8f8cSSatish Balay 795a30f8f8cSSatish Balay PetscFunctionBegin; 79632077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 797fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 798b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 799fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 80032077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 801a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 802a30f8f8cSSatish Balay } else { 8031302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 804a30f8f8cSSatish Balay } 805a30f8f8cSSatish Balay PetscFunctionReturn(0); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay 8084a2ae208SSatish Balay #undef __FUNCT__ 8094a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 810dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 811a30f8f8cSSatish Balay { 812a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 813dfbe8321SBarry Smith PetscErrorCode ierr; 814a30f8f8cSSatish Balay 815a30f8f8cSSatish Balay PetscFunctionBegin; 816a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 817899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 818a30f8f8cSSatish Balay #endif 819a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 820a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 822a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 823a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 824a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 825a30f8f8cSSatish Balay #else 82605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 827a30f8f8cSSatish Balay #endif 82805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 829a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 830a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 83140781036SHong Zhang if (baij->slvec0) { 83240781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83340781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83440781036SHong Zhang } 83540781036SHong Zhang if (baij->slvec1) { 83640781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83740781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83840781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 83940781036SHong Zhang } 84040781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 84105b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 844a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84505b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 846a30f8f8cSSatish Balay #endif 847*59ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 848*59ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 849899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 850a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 851901853e0SKris Buschelman 852901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 853901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 854901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 855901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 856a30f8f8cSSatish Balay PetscFunctionReturn(0); 857a30f8f8cSSatish Balay } 858a30f8f8cSSatish Balay 8594a2ae208SSatish Balay #undef __FUNCT__ 860a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 861dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 862a9d4b620SHong Zhang { 863a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 864dfbe8321SBarry Smith PetscErrorCode ierr; 865899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 866a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 867a9d4b620SHong Zhang 868a9d4b620SHong Zhang PetscFunctionBegin; 869a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 870899cda47SBarry Smith if (nt != A->cmap.n) { 871a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 872a9d4b620SHong Zhang } 873a9d4b620SHong Zhang 874a9d4b620SHong Zhang /* diagonal part */ 875a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8762dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 877a9d4b620SHong Zhang 878a9d4b620SHong Zhang /* subdiagonal part */ 879a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 880899cda47SBarry Smith CHKMEMQ; 881a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8821ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8831ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 884899cda47SBarry Smith CHKMEMQ; 885a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 886899cda47SBarry Smith CHKMEMQ; 8871ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 888a9d4b620SHong Zhang 889899cda47SBarry Smith CHKMEMQ; 890a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 891899cda47SBarry Smith CHKMEMQ; 8921ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 893899cda47SBarry Smith CHKMEMQ; 894a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 895899cda47SBarry Smith CHKMEMQ; 896a9d4b620SHong Zhang /* supperdiagonal part */ 897a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 898899cda47SBarry Smith CHKMEMQ; 899a9d4b620SHong Zhang PetscFunctionReturn(0); 900a9d4b620SHong Zhang } 901a9d4b620SHong Zhang 902a9d4b620SHong Zhang #undef __FUNCT__ 90340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 904dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 905a30f8f8cSSatish Balay { 906a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 907dfbe8321SBarry Smith PetscErrorCode ierr; 9081302d50aSBarry Smith PetscInt nt; 909a30f8f8cSSatish Balay 910a30f8f8cSSatish Balay PetscFunctionBegin; 911a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 912899cda47SBarry Smith if (nt != A->cmap.n) { 91329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 914a30f8f8cSSatish Balay } 915a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 916899cda47SBarry Smith if (nt != A->rmap.N) { 91729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 918a30f8f8cSSatish Balay } 91965d70643SHong Zhang 920b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 921b941877fSHong Zhang /* do diagonal part */ 922b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 923b941877fSHong Zhang /* do supperdiagonal part */ 924b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 925b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 926b941877fSHong Zhang /* do subdiagonal part */ 927b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 928b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 929b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 93065d70643SHong Zhang 931a30f8f8cSSatish Balay PetscFunctionReturn(0); 932a30f8f8cSSatish Balay } 933a30f8f8cSSatish Balay 9344a2ae208SSatish Balay #undef __FUNCT__ 9354a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 937a30f8f8cSSatish Balay { 938de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 941a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 942a9d4b620SHong Zhang 943a9d4b620SHong Zhang PetscFunctionBegin; 944a9d4b620SHong Zhang /* 94556faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94656faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 947a9d4b620SHong Zhang */ 948a9d4b620SHong Zhang /* diagonal part */ 949a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9502dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 951a9d4b620SHong Zhang 952a9d4b620SHong Zhang /* subdiagonal part */ 953a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 954a9d4b620SHong Zhang 955a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9561ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9571ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 958a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9591ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 960a9d4b620SHong Zhang 961a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9621ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 963a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 964a9d4b620SHong Zhang 965a9d4b620SHong Zhang /* supperdiagonal part */ 966a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang PetscFunctionReturn(0); 969a9d4b620SHong Zhang } 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang #undef __FUNCT__ 972a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 973dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 974a9d4b620SHong Zhang { 975a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 976dfbe8321SBarry Smith PetscErrorCode ierr; 977a30f8f8cSSatish Balay 978a30f8f8cSSatish Balay PetscFunctionBegin; 979b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 980b941877fSHong Zhang /* do diagonal part */ 981b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 982b941877fSHong Zhang /* do supperdiagonal part */ 983b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 984de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 985de8b6608SHong Zhang 986b941877fSHong Zhang /* do subdiagonal part */ 987a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 988a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 989a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 990aa482183SHong Zhang 991a30f8f8cSSatish Balay PetscFunctionReturn(0); 992a30f8f8cSSatish Balay } 993a30f8f8cSSatish Balay 994a30f8f8cSSatish Balay /* 995a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 996a30f8f8cSSatish Balay diagonal block 997a30f8f8cSSatish Balay */ 9984a2ae208SSatish Balay #undef __FUNCT__ 9994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1000dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1001a30f8f8cSSatish Balay { 1002a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1003dfbe8321SBarry Smith PetscErrorCode ierr; 1004a30f8f8cSSatish Balay 1005a30f8f8cSSatish Balay PetscFunctionBegin; 1006899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1007a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1008a30f8f8cSSatish Balay PetscFunctionReturn(0); 1009a30f8f8cSSatish Balay } 1010a30f8f8cSSatish Balay 10114a2ae208SSatish Balay #undef __FUNCT__ 10124a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1013f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1014a30f8f8cSSatish Balay { 1015a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1016dfbe8321SBarry Smith PetscErrorCode ierr; 1017a30f8f8cSSatish Balay 1018a30f8f8cSSatish Balay PetscFunctionBegin; 1019f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1020f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1021a30f8f8cSSatish Balay PetscFunctionReturn(0); 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay 10244a2ae208SSatish Balay #undef __FUNCT__ 10254a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10261302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1027a30f8f8cSSatish Balay { 1028d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1029d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1030d0d4cfc2SHong Zhang PetscErrorCode ierr; 1031899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1032899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1033899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1034d0d4cfc2SHong Zhang 1035a30f8f8cSSatish Balay PetscFunctionBegin; 1036d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1037d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1038d0d4cfc2SHong Zhang 1039d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1040d0d4cfc2SHong Zhang /* 1041d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1042d0d4cfc2SHong Zhang */ 1043d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1044d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1045d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1046d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1047d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1048d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1049d0d4cfc2SHong Zhang } 1050d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1051d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang 1054d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1055d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1056d0d4cfc2SHong Zhang 1057d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1058d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1059d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1060d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1061d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1062d0d4cfc2SHong Zhang nztot = nzA + nzB; 1063d0d4cfc2SHong Zhang 1064d0d4cfc2SHong Zhang cmap = mat->garray; 1065d0d4cfc2SHong Zhang if (v || idx) { 1066d0d4cfc2SHong Zhang if (nztot) { 1067d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1068d0d4cfc2SHong Zhang PetscInt imark = -1; 1069d0d4cfc2SHong Zhang if (v) { 1070d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1071d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1072d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1073d0d4cfc2SHong Zhang else break; 1074d0d4cfc2SHong Zhang } 1075d0d4cfc2SHong Zhang imark = i; 1076d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1077d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1078d0d4cfc2SHong Zhang } 1079d0d4cfc2SHong Zhang if (idx) { 1080d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1081d0d4cfc2SHong Zhang if (imark > -1) { 1082d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1083d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1084d0d4cfc2SHong Zhang } 1085d0d4cfc2SHong Zhang } else { 1086d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1087d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1088d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1089d0d4cfc2SHong Zhang else break; 1090d0d4cfc2SHong Zhang } 1091d0d4cfc2SHong Zhang imark = i; 1092d0d4cfc2SHong Zhang } 1093d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1094d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1095d0d4cfc2SHong Zhang } 1096d0d4cfc2SHong Zhang } else { 1097d0d4cfc2SHong Zhang if (idx) *idx = 0; 1098d0d4cfc2SHong Zhang if (v) *v = 0; 1099d0d4cfc2SHong Zhang } 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang *nz = nztot; 1102d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1103d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1104a30f8f8cSSatish Balay PetscFunctionReturn(0); 1105a30f8f8cSSatish Balay } 1106a30f8f8cSSatish Balay 11074a2ae208SSatish Balay #undef __FUNCT__ 11084a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11091302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1110a30f8f8cSSatish Balay { 1111a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1112a30f8f8cSSatish Balay 1113a30f8f8cSSatish Balay PetscFunctionBegin; 1114abc0a331SBarry Smith if (!baij->getrowactive) { 1115abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1116a30f8f8cSSatish Balay } 1117a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1118a30f8f8cSSatish Balay PetscFunctionReturn(0); 1119a30f8f8cSSatish Balay } 1120a30f8f8cSSatish Balay 11214a2ae208SSatish Balay #undef __FUNCT__ 1122d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1123d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1124d0d4cfc2SHong Zhang { 1125d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1126d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1127d0d4cfc2SHong Zhang 1128d0d4cfc2SHong Zhang PetscFunctionBegin; 1129d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1130d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1131d0d4cfc2SHong Zhang } 1132d0d4cfc2SHong Zhang #undef __FUNCT__ 1133d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1134d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1135d0d4cfc2SHong Zhang { 1136d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1137d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1138d0d4cfc2SHong Zhang 1139d0d4cfc2SHong Zhang PetscFunctionBegin; 1140d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1141d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1142d0d4cfc2SHong Zhang } 1143d0d4cfc2SHong Zhang 1144d0d4cfc2SHong Zhang #undef __FUNCT__ 114599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114799cafbc1SBarry Smith { 114899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 114999cafbc1SBarry Smith PetscErrorCode ierr; 115099cafbc1SBarry Smith 115199cafbc1SBarry Smith PetscFunctionBegin; 115299cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 115399cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115499cafbc1SBarry Smith PetscFunctionReturn(0); 115599cafbc1SBarry Smith } 115699cafbc1SBarry Smith 115799cafbc1SBarry Smith #undef __FUNCT__ 115899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 115999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 116099cafbc1SBarry Smith { 116199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 116299cafbc1SBarry Smith PetscErrorCode ierr; 116399cafbc1SBarry Smith 116499cafbc1SBarry Smith PetscFunctionBegin; 116599cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116699cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116799cafbc1SBarry Smith PetscFunctionReturn(0); 116899cafbc1SBarry Smith } 116999cafbc1SBarry Smith 117099cafbc1SBarry Smith #undef __FUNCT__ 11714a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1172dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1173a30f8f8cSSatish Balay { 1174a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1175dfbe8321SBarry Smith PetscErrorCode ierr; 1176a30f8f8cSSatish Balay 1177a30f8f8cSSatish Balay PetscFunctionBegin; 1178a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1179a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1180a30f8f8cSSatish Balay PetscFunctionReturn(0); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay 11834a2ae208SSatish Balay #undef __FUNCT__ 11844a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1185dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1186a30f8f8cSSatish Balay { 1187a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1188a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1189dfbe8321SBarry Smith PetscErrorCode ierr; 1190a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1191a30f8f8cSSatish Balay 1192a30f8f8cSSatish Balay PetscFunctionBegin; 1193899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1194a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1195a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1196a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1197a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1198a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1199a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1200a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1201a30f8f8cSSatish Balay info->nz_used = isend[0]; 1202a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1203a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1204a30f8f8cSSatish Balay info->memory = isend[3]; 1205a30f8f8cSSatish Balay info->mallocs = isend[4]; 1206a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1207d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1208a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1209a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1210a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1211a30f8f8cSSatish Balay info->memory = irecv[3]; 1212a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1213a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1214d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1215a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1216a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1217a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1218a30f8f8cSSatish Balay info->memory = irecv[3]; 1219a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1220a30f8f8cSSatish Balay } else { 122177431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1222a30f8f8cSSatish Balay } 1223899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1224899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1225899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1226899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1227a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1228a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1229a30f8f8cSSatish Balay info->factor_mallocs = 0; 1230a30f8f8cSSatish Balay PetscFunctionReturn(0); 1231a30f8f8cSSatish Balay } 1232a30f8f8cSSatish Balay 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1235dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1236a30f8f8cSSatish Balay { 1237a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1238d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1239dfbe8321SBarry Smith PetscErrorCode ierr; 1240a30f8f8cSSatish Balay 1241a30f8f8cSSatish Balay PetscFunctionBegin; 1242e98b92d7SKris Buschelman switch (op) { 1243e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1244e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1245e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1246e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1247e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1248e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1249e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1250a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1251a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1252e98b92d7SKris Buschelman break; 1253e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1254a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1255a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1256a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1257e98b92d7SKris Buschelman break; 1258e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1259e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1260e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1261ae15b995SBarry Smith ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr); 1262e98b92d7SKris Buschelman break; 1263e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1264a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1265a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1266a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1267e98b92d7SKris Buschelman break; 1268e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1269a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1270e98b92d7SKris Buschelman break; 1271e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 127229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1273e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1274a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1275e98b92d7SKris Buschelman break; 12769a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12779a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12789a4540c5SBarry Smith case MAT_HERMITIAN: 12799a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 128077e54ba9SKris Buschelman case MAT_SYMMETRIC: 128177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12829a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12839a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12849a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 128577e54ba9SKris Buschelman break; 1286d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1287d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1288d0d4cfc2SHong Zhang break; 1289d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1290d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1291d0d4cfc2SHong Zhang break; 1292d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1293d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1294d0d4cfc2SHong Zhang break; 1295e98b92d7SKris Buschelman default: 129629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1297a30f8f8cSSatish Balay } 1298a30f8f8cSSatish Balay PetscFunctionReturn(0); 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay 13014a2ae208SSatish Balay #undef __FUNCT__ 13028115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1303dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1304a30f8f8cSSatish Balay { 1305dfbe8321SBarry Smith PetscErrorCode ierr; 1306a30f8f8cSSatish Balay PetscFunctionBegin; 1307999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13088115998fSBarry Smith PetscFunctionReturn(0); 1309a30f8f8cSSatish Balay } 1310a30f8f8cSSatish Balay 13114a2ae208SSatish Balay #undef __FUNCT__ 13124a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1313dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1314a30f8f8cSSatish Balay { 1315a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1316a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1317dfbe8321SBarry Smith PetscErrorCode ierr; 13185e90f9d9SHong Zhang PetscInt nv,m,n; 1319b3bf805bSHong Zhang PetscTruth flg; 1320a30f8f8cSSatish Balay 1321a30f8f8cSSatish Balay PetscFunctionBegin; 1322a30f8f8cSSatish Balay if (ll != rr){ 1323b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1324b3bf805bSHong Zhang if (!flg) 132529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1326a30f8f8cSSatish Balay } 1327b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1328b3bf805bSHong Zhang 13295e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13305e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1331b3bf805bSHong Zhang 13325e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13335e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13345e90f9d9SHong Zhang 1335a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 13365e90f9d9SHong Zhang 13375e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1338a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13395e90f9d9SHong Zhang 13405e90f9d9SHong Zhang /* scale the diagonal part */ 1341a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1342a30f8f8cSSatish Balay 13435e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1344a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1345a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1346a30f8f8cSSatish Balay PetscFunctionReturn(0); 1347a30f8f8cSSatish Balay } 1348a30f8f8cSSatish Balay 13494a2ae208SSatish Balay #undef __FUNCT__ 13504a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1351dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1352a30f8f8cSSatish Balay { 1353a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1354a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13551302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1356dfbe8321SBarry Smith PetscErrorCode ierr; 1357a30f8f8cSSatish Balay 1358a30f8f8cSSatish Balay PetscFunctionBegin; 1359a30f8f8cSSatish Balay if (!a->rank) { 1360a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1361a30f8f8cSSatish Balay } 13621302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1363a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1364a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1365a30f8f8cSSatish Balay PetscFunctionReturn(0); 1366a30f8f8cSSatish Balay } 1367a30f8f8cSSatish Balay 13684a2ae208SSatish Balay #undef __FUNCT__ 13694a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1370dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1371a30f8f8cSSatish Balay { 1372f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1373dfbe8321SBarry Smith PetscErrorCode ierr; 1374a30f8f8cSSatish Balay 1375a30f8f8cSSatish Balay PetscFunctionBegin; 1376a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1377a30f8f8cSSatish Balay PetscFunctionReturn(0); 1378a30f8f8cSSatish Balay } 1379a30f8f8cSSatish Balay 13806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1381a30f8f8cSSatish Balay 13824a2ae208SSatish Balay #undef __FUNCT__ 13834a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1384dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1385a30f8f8cSSatish Balay { 1386a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1387a30f8f8cSSatish Balay Mat a,b,c,d; 1388a30f8f8cSSatish Balay PetscTruth flg; 1389dfbe8321SBarry Smith PetscErrorCode ierr; 1390a30f8f8cSSatish Balay 1391a30f8f8cSSatish Balay PetscFunctionBegin; 1392a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1393a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1394a30f8f8cSSatish Balay 1395a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1396abc0a331SBarry Smith if (flg) { 1397a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay } 1399a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1400a30f8f8cSSatish Balay PetscFunctionReturn(0); 1401a30f8f8cSSatish Balay } 1402a30f8f8cSSatish Balay 14034a2ae208SSatish Balay #undef __FUNCT__ 14043c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14053c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14063c896bc6SHong Zhang { 14073c896bc6SHong Zhang PetscErrorCode ierr; 14083c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 14093c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 14103c896bc6SHong Zhang 14113c896bc6SHong Zhang PetscFunctionBegin; 14123c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14133c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1414d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14153c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1416d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14173c896bc6SHong Zhang } else { 14183c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14193c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14203c896bc6SHong Zhang } 14213c896bc6SHong Zhang PetscFunctionReturn(0); 14223c896bc6SHong Zhang } 14233c896bc6SHong Zhang 14243c896bc6SHong Zhang #undef __FUNCT__ 14254a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1426dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1427273d9f13SBarry Smith { 1428dfbe8321SBarry Smith PetscErrorCode ierr; 1429273d9f13SBarry Smith 1430273d9f13SBarry Smith PetscFunctionBegin; 14317edd0491SSatish Balay ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1432273d9f13SBarry Smith PetscFunctionReturn(0); 1433273d9f13SBarry Smith } 1434a5e6ed63SBarry Smith 14354fe895cdSHong Zhang #include "petscblaslapack.h" 14364fe895cdSHong Zhang #undef __FUNCT__ 14374fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14384fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14394fe895cdSHong Zhang { 14404fe895cdSHong Zhang PetscErrorCode ierr; 14414fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14424fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14434fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14444fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14454fe895cdSHong Zhang 14464fe895cdSHong Zhang PetscFunctionBegin; 14474fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14484fe895cdSHong Zhang PetscScalar alpha = a; 14494fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14504fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14514fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14524fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14534fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14544fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14554fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14564fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14574fe895cdSHong Zhang } else { 1458d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14594fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1460d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14614fe895cdSHong Zhang } 14624fe895cdSHong Zhang PetscFunctionReturn(0); 14634fe895cdSHong Zhang } 14644fe895cdSHong Zhang 1465a5e6ed63SBarry Smith #undef __FUNCT__ 1466a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14671302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1468a5e6ed63SBarry Smith { 14696849ba73SBarry Smith PetscErrorCode ierr; 14701302d50aSBarry Smith PetscInt i; 1471a5e6ed63SBarry Smith PetscTruth flg; 1472a5e6ed63SBarry Smith 14736849ba73SBarry Smith PetscFunctionBegin; 1474a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1475a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1476a5e6ed63SBarry Smith if (!flg) { 14771302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1478a5e6ed63SBarry Smith } 1479a5e6ed63SBarry Smith } 1480a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1481a5e6ed63SBarry Smith PetscFunctionReturn(0); 1482a5e6ed63SBarry Smith } 1483a5e6ed63SBarry Smith 1484a5e6ed63SBarry Smith 1485a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1486a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1487a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1488a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1489a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1490a9d4b620SHong Zhang MatMult_MPISBAIJ, 149197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1492431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1493431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 149797304618SKris Buschelman /*10*/ 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 15002798e883SHong Zhang MatRelax_MPISBAIJ, 1501a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 150297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1503a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1504a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1505a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1506a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 150797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1508a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1511a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1512dcf5cc72SBarry Smith /*25*/ 0, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 151797304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1518b5df2d14SHong Zhang 0, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 152297304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 15274fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1528a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1529d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1530a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15313c896bc6SHong Zhang MatCopy_MPISBAIJ, 153297304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1533a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537521d7252SBarry Smith /*50*/ 0, 1538a30f8f8cSSatish Balay 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay 0, 154297304618SKris Buschelman /*55*/ 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 154797304618SKris Buschelman /*60*/ 0, 1548a30f8f8cSSatish Balay 0, 1549a30f8f8cSSatish Balay 0, 1550357abbc8SBarry Smith 0, 155124d5174aSHong Zhang 0, 155297304618SKris Buschelman /*65*/ 0, 155324d5174aSHong Zhang 0, 155424d5174aSHong Zhang 0, 155524d5174aSHong Zhang 0, 155624d5174aSHong Zhang 0, 155797304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 155824d5174aSHong Zhang 0, 155997304618SKris Buschelman 0, 156097304618SKris Buschelman 0, 156197304618SKris Buschelman 0, 156297304618SKris Buschelman /*75*/ 0, 156397304618SKris Buschelman 0, 156497304618SKris Buschelman 0, 156597304618SKris Buschelman 0, 156697304618SKris Buschelman 0, 156797304618SKris Buschelman /*80*/ 0, 156897304618SKris Buschelman 0, 156997304618SKris Buschelman 0, 157097304618SKris Buschelman 0, 1571865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1572865e5f61SKris Buschelman /*85*/ 0, 1573865e5f61SKris Buschelman 0, 1574865e5f61SKris Buschelman 0, 1575865e5f61SKris Buschelman 0, 1576865e5f61SKris Buschelman 0, 1577865e5f61SKris Buschelman /*90*/ 0, 1578865e5f61SKris Buschelman 0, 1579865e5f61SKris Buschelman 0, 1580865e5f61SKris Buschelman 0, 1581865e5f61SKris Buschelman 0, 1582865e5f61SKris Buschelman /*95*/ 0, 1583865e5f61SKris Buschelman 0, 1584865e5f61SKris Buschelman 0, 158599cafbc1SBarry Smith 0, 158699cafbc1SBarry Smith 0, 158799cafbc1SBarry Smith /*100*/0, 158899cafbc1SBarry Smith 0, 158999cafbc1SBarry Smith 0, 159099cafbc1SBarry Smith 0, 159199cafbc1SBarry Smith 0, 159299cafbc1SBarry Smith /*105*/0, 159399cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1594d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1595d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1596d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 159799cafbc1SBarry Smith }; 1598a30f8f8cSSatish Balay 1599a30f8f8cSSatish Balay 1600a30f8f8cSSatish Balay EXTERN_C_BEGIN 16014a2ae208SSatish Balay #undef __FUNCT__ 16024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1603be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1604a30f8f8cSSatish Balay { 1605a30f8f8cSSatish Balay PetscFunctionBegin; 1606a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1607a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1608a30f8f8cSSatish Balay PetscFunctionReturn(0); 1609a30f8f8cSSatish Balay } 1610a30f8f8cSSatish Balay EXTERN_C_END 1611a30f8f8cSSatish Balay 1612273d9f13SBarry Smith EXTERN_C_BEGIN 16134a2ae208SSatish Balay #undef __FUNCT__ 1614a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1615be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1616a23d5eceSKris Buschelman { 1617a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1618dfbe8321SBarry Smith PetscErrorCode ierr; 16191302d50aSBarry Smith PetscInt i,mbs,Mbs; 1620a23d5eceSKris Buschelman 1621a23d5eceSKris Buschelman PetscFunctionBegin; 1622a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1623a23d5eceSKris Buschelman 1624a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1625a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1626a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 162777431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 162877431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1629899cda47SBarry Smith 1630899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 1631899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr); 1632899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr); 1633899cda47SBarry Smith 1634a23d5eceSKris Buschelman if (d_nnz) { 1635899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 163677431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1637a23d5eceSKris Buschelman } 1638a23d5eceSKris Buschelman } 1639a23d5eceSKris Buschelman if (o_nnz) { 1640899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 164177431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1642a23d5eceSKris Buschelman } 1643a23d5eceSKris Buschelman } 1644a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1645a23d5eceSKris Buschelman 1646a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1647899cda47SBarry Smith mbs = B->rmap.n/bs; 1648899cda47SBarry Smith Mbs = B->rmap.N/bs; 1649899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1650899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1651a23d5eceSKris Buschelman } 1652a23d5eceSKris Buschelman 1653899cda47SBarry Smith B->rmap.bs = bs; 1654a23d5eceSKris Buschelman b->bs2 = bs*bs; 1655a23d5eceSKris Buschelman b->mbs = mbs; 1656a23d5eceSKris Buschelman b->nbs = mbs; 1657a23d5eceSKris Buschelman b->Mbs = Mbs; 1658a23d5eceSKris Buschelman b->Nbs = Mbs; 1659a23d5eceSKris Buschelman 1660a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1661899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1662a23d5eceSKris Buschelman } 1663899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1664899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1665a23d5eceSKris Buschelman 1666899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1667899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1668a23d5eceSKris Buschelman 1669f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1670899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16719c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1672c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 167352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16749c097c71SKris Buschelman 1675f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1676899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16774aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1678589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 167952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1680a23d5eceSKris Buschelman 1681a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1682a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1683a23d5eceSKris Buschelman 1684a23d5eceSKris Buschelman PetscFunctionReturn(0); 1685a23d5eceSKris Buschelman } 1686a23d5eceSKris Buschelman EXTERN_C_END 1687a23d5eceSKris Buschelman 16880bad9183SKris Buschelman /*MC 1689fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16900bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16910bad9183SKris Buschelman 16920bad9183SKris Buschelman Options Database Keys: 16930bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16940bad9183SKris Buschelman 16950bad9183SKris Buschelman Level: beginner 16960bad9183SKris Buschelman 16970bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16980bad9183SKris Buschelman M*/ 16990bad9183SKris Buschelman 1700a23d5eceSKris Buschelman EXTERN_C_BEGIN 1701a23d5eceSKris Buschelman #undef __FUNCT__ 17024a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1703be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1704b5df2d14SHong Zhang { 1705b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1706dfbe8321SBarry Smith PetscErrorCode ierr; 1707b5df2d14SHong Zhang PetscTruth flg; 1708b5df2d14SHong Zhang 1709b5df2d14SHong Zhang PetscFunctionBegin; 1710b5df2d14SHong Zhang 1711b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1712b0a32e0cSBarry Smith B->data = (void*)b; 1713b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1714b5df2d14SHong Zhang 1715b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1716b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1717b5df2d14SHong Zhang B->mapping = 0; 1718b5df2d14SHong Zhang B->factor = 0; 1719b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1720b5df2d14SHong Zhang 1721b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1722b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1723b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1724b5df2d14SHong Zhang 1725b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1726899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1727b5df2d14SHong Zhang 1728b5df2d14SHong Zhang /* build cache for off array entries formed */ 1729b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1730b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1731b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1732b5df2d14SHong Zhang b->garray = PETSC_NULL; 1733b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1734b5df2d14SHong Zhang 1735f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1736b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 173764a35ccbSBarry Smith b->setvalueslen = 0; 1738b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1739b5df2d14SHong Zhang #endif 1740b5df2d14SHong Zhang 1741b5df2d14SHong Zhang /* stuff used in block assembly */ 1742b5df2d14SHong Zhang b->barray = 0; 1743b5df2d14SHong Zhang 1744b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1745b5df2d14SHong Zhang b->lvec = 0; 1746b5df2d14SHong Zhang b->Mvctx = 0; 174740781036SHong Zhang b->slvec0 = 0; 174840781036SHong Zhang b->slvec0b = 0; 174940781036SHong Zhang b->slvec1 = 0; 175040781036SHong Zhang b->slvec1a = 0; 175140781036SHong Zhang b->slvec1b = 0; 175240781036SHong Zhang b->sMvctx = 0; 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1755b5df2d14SHong Zhang b->rowindices = 0; 1756b5df2d14SHong Zhang b->rowvalues = 0; 1757b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1758b5df2d14SHong Zhang 1759b5df2d14SHong Zhang /* hash table stuff */ 1760b5df2d14SHong Zhang b->ht = 0; 1761b5df2d14SHong Zhang b->hd = 0; 1762b5df2d14SHong Zhang b->ht_size = 0; 1763b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1764b5df2d14SHong Zhang b->ht_fact = 0; 1765b5df2d14SHong Zhang b->ht_total_ct = 0; 1766b5df2d14SHong Zhang b->ht_insert_ct = 0; 1767b5df2d14SHong Zhang 1768*59ffdab8SBarry Smith b->in_loc = 0; 1769*59ffdab8SBarry Smith b->v_loc = 0; 1770*59ffdab8SBarry Smith b->n_loc = 0; 1771e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1772b5df2d14SHong Zhang if (flg) { 1773f6275e2eSBarry Smith PetscReal fact = 1.39; 1774b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1775e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1776b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1777b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1778ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1779b5df2d14SHong Zhang } 1780b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1781b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1782b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1783b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1784b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1785b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1786b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1787b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1788b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1789a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1790a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1791a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 179223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 179323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 179423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 179523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1796b5df2d14SHong Zhang PetscFunctionReturn(0); 1797b5df2d14SHong Zhang } 1798273d9f13SBarry Smith EXTERN_C_END 1799b5df2d14SHong Zhang 1800209238afSKris Buschelman /*MC 1801002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1802209238afSKris Buschelman 1803209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1804209238afSKris Buschelman and MATMPISBAIJ otherwise. 1805209238afSKris Buschelman 1806209238afSKris Buschelman Options Database Keys: 1807209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1808209238afSKris Buschelman 1809209238afSKris Buschelman Level: beginner 1810209238afSKris Buschelman 1811209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1812209238afSKris Buschelman M*/ 1813209238afSKris Buschelman 1814209238afSKris Buschelman EXTERN_C_BEGIN 1815209238afSKris Buschelman #undef __FUNCT__ 1816209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1817be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1818dfbe8321SBarry Smith { 18196849ba73SBarry Smith PetscErrorCode ierr; 18201302d50aSBarry Smith PetscMPIInt size; 1821209238afSKris Buschelman 1822209238afSKris Buschelman PetscFunctionBegin; 1823209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1824209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1825209238afSKris Buschelman if (size == 1) { 1826209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1827209238afSKris Buschelman } else { 1828209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1829209238afSKris Buschelman } 1830209238afSKris Buschelman PetscFunctionReturn(0); 1831209238afSKris Buschelman } 1832209238afSKris Buschelman EXTERN_C_END 1833209238afSKris Buschelman 18344a2ae208SSatish Balay #undef __FUNCT__ 18354a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1836b5df2d14SHong Zhang /*@C 1837b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1838b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1839b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1840b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1841b5df2d14SHong Zhang 1842b5df2d14SHong Zhang Collective on Mat 1843b5df2d14SHong Zhang 1844b5df2d14SHong Zhang Input Parameters: 1845b5df2d14SHong Zhang + A - the matrix 1846b5df2d14SHong Zhang . bs - size of blockk 1847b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1848b5df2d14SHong Zhang submatrix (same for all local rows) 1849b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18506d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18516d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18526d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1853b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1854b5df2d14SHong Zhang submatrix (same for all local rows). 1855b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1856b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1857b5df2d14SHong Zhang each block row) or PETSC_NULL. 1858b5df2d14SHong Zhang 1859b5df2d14SHong Zhang 1860b5df2d14SHong Zhang Options Database Keys: 1861b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1862b5df2d14SHong Zhang block calculations (much slower) 1863b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang Notes: 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1868b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1869b5df2d14SHong Zhang 187049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187149a6f317SBarry Smith 1872b5df2d14SHong Zhang Storage Information: 1873b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1874b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1875b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1876b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1877b5df2d14SHong Zhang 1878b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1879b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1880b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1881b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1882b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1883b5df2d14SHong Zhang 1884b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1885b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1886b5df2d14SHong Zhang 1887b5df2d14SHong Zhang .vb 1888b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1889b5df2d14SHong Zhang ------------------- 1890b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1891b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1892b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1893b5df2d14SHong Zhang ------------------- 1894b5df2d14SHong Zhang .ve 1895b5df2d14SHong Zhang 1896b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1897b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18986d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18996d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1900b5df2d14SHong Zhang 19016d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19026d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1903b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1904b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1905b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1906b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1907b5df2d14SHong Zhang matrices. 1908b5df2d14SHong Zhang 1909b5df2d14SHong Zhang Level: intermediate 1910b5df2d14SHong Zhang 1911b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1912b5df2d14SHong Zhang 1913b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1914b5df2d14SHong Zhang @*/ 1915be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1916b5df2d14SHong Zhang { 19171302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1918b5df2d14SHong Zhang 1919b5df2d14SHong Zhang PetscFunctionBegin; 1920a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1921a23d5eceSKris Buschelman if (f) { 1922a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1923b5df2d14SHong Zhang } 1924b5df2d14SHong Zhang PetscFunctionReturn(0); 1925b5df2d14SHong Zhang } 1926b5df2d14SHong Zhang 19274a2ae208SSatish Balay #undef __FUNCT__ 19284a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1929a30f8f8cSSatish Balay /*@C 1930a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1931a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1932a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1933a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1934a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay Collective on MPI_Comm 1937a30f8f8cSSatish Balay 1938a30f8f8cSSatish Balay Input Parameters: 1939a30f8f8cSSatish Balay + comm - MPI communicator 1940a30f8f8cSSatish Balay . bs - size of blockk 1941a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1942a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1943a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1944a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1945a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1946a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1947a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1948a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1949a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1950a30f8f8cSSatish Balay submatrix (same for all local rows) 1951a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19526d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19536d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19546d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1955a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1956a30f8f8cSSatish Balay submatrix (same for all local rows). 1957a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1958a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1959a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1960a30f8f8cSSatish Balay 1961a30f8f8cSSatish Balay Output Parameter: 1962a30f8f8cSSatish Balay . A - the matrix 1963a30f8f8cSSatish Balay 1964a30f8f8cSSatish Balay Options Database Keys: 1965a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1966a30f8f8cSSatish Balay block calculations (much slower) 1967a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1968a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1969a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay Notes: 1972d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1973d1be2dadSMatthew Knepley 1974a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1975a30f8f8cSSatish Balay (possibly both). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1978a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1979a30f8f8cSSatish Balay 198049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198149a6f317SBarry Smith 1982a30f8f8cSSatish Balay Storage Information: 1983a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1984a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1985a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1986a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1987a30f8f8cSSatish Balay 1988a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1989a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1990a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1991a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1992a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1993a30f8f8cSSatish Balay 1994a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1995a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1996a30f8f8cSSatish Balay 1997a30f8f8cSSatish Balay .vb 1998a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1999a30f8f8cSSatish Balay ------------------- 2000a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2001a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2002a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2003a30f8f8cSSatish Balay ------------------- 2004a30f8f8cSSatish Balay .ve 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2007a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20086d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20096d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2010a30f8f8cSSatish Balay 20116d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20126d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2013a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2014a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2015a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2016a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2017a30f8f8cSSatish Balay matrices. 2018a30f8f8cSSatish Balay 2019a30f8f8cSSatish Balay Level: intermediate 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2022a30f8f8cSSatish Balay 2023a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2024a30f8f8cSSatish Balay @*/ 2025a30f8f8cSSatish Balay 2026be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2027a30f8f8cSSatish Balay { 20286849ba73SBarry Smith PetscErrorCode ierr; 20291302d50aSBarry Smith PetscMPIInt size; 2030a30f8f8cSSatish Balay 2031a30f8f8cSSatish Balay PetscFunctionBegin; 2032f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2033f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2034273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2035273d9f13SBarry Smith if (size > 1) { 2036b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2037b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2038273d9f13SBarry Smith } else { 2039273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2040273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2041273d9f13SBarry Smith } 2042a30f8f8cSSatish Balay PetscFunctionReturn(0); 2043a30f8f8cSSatish Balay } 2044a30f8f8cSSatish Balay 2045a30f8f8cSSatish Balay 20464a2ae208SSatish Balay #undef __FUNCT__ 20474a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20486849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2049a30f8f8cSSatish Balay { 2050a30f8f8cSSatish Balay Mat mat; 2051a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2052dfbe8321SBarry Smith PetscErrorCode ierr; 2053899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2054387bc808SHong Zhang PetscScalar *array; 2055a30f8f8cSSatish Balay 2056a30f8f8cSSatish Balay PetscFunctionBegin; 2057a30f8f8cSSatish Balay *newmat = 0; 2058f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2059899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2060be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20611d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2062899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2063899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2064e1b6402fSHong Zhang 206582327fa8SHong Zhang mat->factor = matin->factor; 2066273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20687fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20697fff6886SHong Zhang 2070b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2071a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2072a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2073a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2074a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2075a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2076a30f8f8cSSatish Balay 2077899cda47SBarry Smith 2078a30f8f8cSSatish Balay a->size = oldmat->size; 2079a30f8f8cSSatish Balay a->rank = oldmat->rank; 2080a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2081a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2082a30f8f8cSSatish Balay a->rowindices = 0; 2083a30f8f8cSSatish Balay a->rowvalues = 0; 2084a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2085a30f8f8cSSatish Balay a->barray = 0; 2086899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2087899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2088899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2089899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2090a30f8f8cSSatish Balay 2091a30f8f8cSSatish Balay /* hash table stuff */ 2092a30f8f8cSSatish Balay a->ht = 0; 2093a30f8f8cSSatish Balay a->hd = 0; 2094a30f8f8cSSatish Balay a->ht_size = 0; 2095a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2096a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2097a30f8f8cSSatish Balay a->ht_total_ct = 0; 2098a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2099a30f8f8cSSatish Balay 2100899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2101a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2102899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay if (oldmat->colmap) { 2104a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2105a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay #else 21071302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21091302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2110a30f8f8cSSatish Balay #endif 2111a30f8f8cSSatish Balay } else a->colmap = 0; 2112387bc808SHong Zhang 2113a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21141302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 211552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21161302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2117a30f8f8cSSatish Balay } else a->garray = 0; 2118a30f8f8cSSatish Balay 2119a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2121a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 212252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 212382327fa8SHong Zhang 212482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2128387bc808SHong Zhang 2129387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21301ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2131387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2132387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21331ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21341ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2135387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21361ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 214052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 214152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2142387bc808SHong Zhang 2143387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2144387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2145387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214782327fa8SHong Zhang 2148a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2150a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 215152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2152b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay *newmat = mat; 2154a30f8f8cSSatish Balay PetscFunctionReturn(0); 2155a30f8f8cSSatish Balay } 2156a30f8f8cSSatish Balay 2157a30f8f8cSSatish Balay #include "petscsys.h" 2158a30f8f8cSSatish Balay 21594a2ae208SSatish Balay #undef __FUNCT__ 21604a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2161f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2162a30f8f8cSSatish Balay { 2163a30f8f8cSSatish Balay Mat A; 21646849ba73SBarry Smith PetscErrorCode ierr; 216513f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216687828ca2SBarry Smith PetscScalar *vals,*buf; 2167a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2168a30f8f8cSSatish Balay MPI_Status status; 21692fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 217013f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21712fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21721302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21731302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21741302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217513f74950SBarry Smith int fd; 2176a30f8f8cSSatish Balay 2177a30f8f8cSSatish Balay PetscFunctionBegin; 2178b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay 2180a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2181a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay if (!rank) { 2183b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2184a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2185552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2186a30f8f8cSSatish Balay if (header[3] < 0) { 218729bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2188a30f8f8cSSatish Balay } 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay 2191a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2193a30f8f8cSSatish Balay 219429bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2195a30f8f8cSSatish Balay 2196a30f8f8cSSatish Balay /* 2197a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2198a30f8f8cSSatish Balay divisible by the blocksize 2199a30f8f8cSSatish Balay */ 2200a30f8f8cSSatish Balay Mbs = M/bs; 2201a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2202a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2203a30f8f8cSSatish Balay else Mbs++; 2204a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2205ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2206a30f8f8cSSatish Balay } 2207a30f8f8cSSatish Balay 2208a30f8f8cSSatish Balay /* determine ownership of all rows */ 2209a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2210a30f8f8cSSatish Balay m = mbs*bs; 2211a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay browners = rowners + size + 1; 2213a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay rowners[0] = 0; 2215a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2216a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2217a30f8f8cSSatish Balay rstart = rowners[rank]; 2218a30f8f8cSSatish Balay rend = rowners[rank+1]; 2219a30f8f8cSSatish Balay 2220a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22212fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay if (!rank) { 22231302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2226a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2228a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay } else { 2231a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay } 2233a30f8f8cSSatish Balay 22340222edb1SHong Zhang if (!rank) { /* procs[0] */ 2235a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22361302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22371302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2238a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2239a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2240a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2241a30f8f8cSSatish Balay } 2242a30f8f8cSSatish Balay } 2243a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay 2245a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2246a30f8f8cSSatish Balay maxnz = 0; 2247a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2248a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2249a30f8f8cSSatish Balay } 22501302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay 2252a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2253a30f8f8cSSatish Balay nz = procsnz[0]; 22541302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay mycols = ibuf; 2256a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2257a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2259a30f8f8cSSatish Balay 2260a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2261a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2262a30f8f8cSSatish Balay nz = procsnz[i]; 2263a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2264a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay } 2266a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2267a30f8f8cSSatish Balay if (size != 1) { 2268a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2269a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2271a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay } 2273a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22740222edb1SHong Zhang } else { /* procs[i], i>0 */ 2275a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2276a30f8f8cSSatish Balay nz = 0; 2277a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2278a30f8f8cSSatish Balay nz += locrowlens[i]; 2279a30f8f8cSSatish Balay } 22801302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2281a30f8f8cSSatish Balay mycols = ibuf; 2282a30f8f8cSSatish Balay /* receive message of column indices*/ 2283a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2284a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 228529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2286a30f8f8cSSatish Balay } 2287a30f8f8cSSatish Balay 2288a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22891302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2290a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22911302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22921302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2293a30f8f8cSSatish Balay masked1 = mask + Mbs; 2294a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2295a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2296a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2297a30f8f8cSSatish Balay dcount = 0; 2298a30f8f8cSSatish Balay odcount = 0; 2299a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2300a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2301a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23020222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2303a30f8f8cSSatish Balay if (!mask[tmp]) { 2304a30f8f8cSSatish Balay mask[tmp] = 1; 23050222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23060222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2307a30f8f8cSSatish Balay } 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay rowcount++; 2310a30f8f8cSSatish Balay } 2311a30f8f8cSSatish Balay 23120222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23130222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2314a30f8f8cSSatish Balay 2315a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2316a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2317a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2318a30f8f8cSSatish Balay } 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay /* create our matrix */ 2321f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2322f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 232322191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232422191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2325273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay if (!rank) { 232887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2329a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2330a30f8f8cSSatish Balay nz = procsnz[0]; 2331a30f8f8cSSatish Balay vals = buf; 2332a30f8f8cSSatish Balay mycols = ibuf; 2333a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2334a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2335a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2336a30f8f8cSSatish Balay 2337a30f8f8cSSatish Balay /* insert into matrix */ 2338a30f8f8cSSatish Balay jj = rstart*bs; 2339a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23407e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay mycols += locrowlens[i]; 2342a30f8f8cSSatish Balay vals += locrowlens[i]; 2343a30f8f8cSSatish Balay jj++; 2344a30f8f8cSSatish Balay } 23457e06b45fSHong Zhang 2346a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2347a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2348a30f8f8cSSatish Balay nz = procsnz[i]; 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2352a30f8f8cSSatish Balay } 2353a30f8f8cSSatish Balay /* the last proc */ 2354a30f8f8cSSatish Balay if (size != 1){ 2355a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2356a30f8f8cSSatish Balay vals = buf; 2357a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2359a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2360a30f8f8cSSatish Balay } 2361a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23627e06b45fSHong Zhang 2363a30f8f8cSSatish Balay } else { 2364a30f8f8cSSatish Balay /* receive numeric values */ 236587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay /* receive message of values*/ 2368a30f8f8cSSatish Balay vals = buf; 2369a30f8f8cSSatish Balay mycols = ibuf; 2370a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay /* insert into matrix */ 2375a30f8f8cSSatish Balay jj = rstart*bs; 2376a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2377a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay mycols += locrowlens[i]; 2379a30f8f8cSSatish Balay vals += locrowlens[i]; 2380a30f8f8cSSatish Balay jj++; 2381a30f8f8cSSatish Balay } 2382a30f8f8cSSatish Balay } 23837e06b45fSHong Zhang 2384a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2385a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2386a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2387a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2389a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2390a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2391a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239222191285SKris Buschelman *newmat = A; 2393a30f8f8cSSatish Balay PetscFunctionReturn(0); 2394a30f8f8cSSatish Balay } 2395a30f8f8cSSatish Balay 23964a2ae208SSatish Balay #undef __FUNCT__ 23974a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2398dcf5cc72SBarry Smith /*XXXXX@ 2399a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2400a30f8f8cSSatish Balay 2401a30f8f8cSSatish Balay Input Parameters: 2402a30f8f8cSSatish Balay . mat - the matrix 2403a30f8f8cSSatish Balay . fact - factor 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay Collective on Mat 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay Level: advanced 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay Notes: 2410a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2413a30f8f8cSSatish Balay 2414a30f8f8cSSatish Balay .seealso: MatSetOption() 2415dcf5cc72SBarry Smith @XXXXX*/ 2416dcf5cc72SBarry Smith 241724d5174aSHong Zhang 24184a2ae208SSatish Balay #undef __FUNCT__ 24194a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2420dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 242124d5174aSHong Zhang { 242224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2423f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2424ca54ac64SHong Zhang PetscReal atmp; 242587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2426dfbe8321SBarry Smith PetscErrorCode ierr; 24271302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24281302d50aSBarry Smith PetscMPIInt rank,size; 24291302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 243087828ca2SBarry Smith PetscScalar *va; 24318a1c53f2SBarry Smith MatScalar *ba; 2432f4c0e9e4SHong Zhang MPI_Status stat; 243324d5174aSHong Zhang 243424d5174aSHong Zhang PetscFunctionBegin; 2435d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24361ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2437f4c0e9e4SHong Zhang 243856faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 243956faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2440f4c0e9e4SHong Zhang 2441899cda47SBarry Smith bs = A->rmap.bs; 2442f4c0e9e4SHong Zhang mbs = a->mbs; 2443f4c0e9e4SHong Zhang Mbs = a->Mbs; 2444f4c0e9e4SHong Zhang ba = b->a; 2445f4c0e9e4SHong Zhang bi = b->i; 2446f4c0e9e4SHong Zhang bj = b->j; 2447f4c0e9e4SHong Zhang 2448f4c0e9e4SHong Zhang /* find ownerships */ 2449899cda47SBarry Smith rowners_bs = A->rmap.range; 2450f4c0e9e4SHong Zhang 2451f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245282502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2453ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2454f4c0e9e4SHong Zhang 2455f4c0e9e4SHong Zhang /* row_max for B */ 2456b8475685SHong Zhang if (rank != size-1){ 2457f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2458f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2459f4c0e9e4SHong Zhang brow = bs*i; 2460f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2461f4c0e9e4SHong Zhang bcol = bs*(*bj); 2462f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2463ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2465f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2466f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2467ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2468ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2469f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2470f4c0e9e4SHong Zhang } 2471f4c0e9e4SHong Zhang } 2472f4c0e9e4SHong Zhang bj++; 2473f4c0e9e4SHong Zhang } 2474f4c0e9e4SHong Zhang } 2475f4c0e9e4SHong Zhang 2476f4c0e9e4SHong Zhang /* send values to its owners */ 2477f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2478f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2479ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 248056faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2481ca54ac64SHong Zhang } 2482f4c0e9e4SHong Zhang } 2483f4c0e9e4SHong Zhang 2484f4c0e9e4SHong Zhang /* receive values */ 2485ca54ac64SHong Zhang if (rank){ 2486f4c0e9e4SHong Zhang rvalues = work; 2487ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2488f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248956faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2490f4c0e9e4SHong Zhang /* process values */ 2491f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2492ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2493f4c0e9e4SHong Zhang } 2494f4c0e9e4SHong Zhang } 2495ca54ac64SHong Zhang } 2496f4c0e9e4SHong Zhang 24971ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2498ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249924d5174aSHong Zhang PetscFunctionReturn(0); 250024d5174aSHong Zhang } 25012798e883SHong Zhang 25022798e883SHong Zhang #undef __FUNCT__ 25032798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 25041302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25052798e883SHong Zhang { 25062798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2507dfbe8321SBarry Smith PetscErrorCode ierr; 2508899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2509efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2510ffe4fb16SHong Zhang Vec bb1; 2511ffe4fb16SHong Zhang 2512ffe4fb16SHong Zhang PetscFunctionBegin; 251377431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2514ffe4fb16SHong Zhang if (bs > 1) 2515ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2516ffe4fb16SHong Zhang 2517ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2518ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2519ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2520ffe4fb16SHong Zhang its--; 2521ffe4fb16SHong Zhang } 2522ffe4fb16SHong Zhang 2523ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang while (its--){ 2525ffe4fb16SHong Zhang 2526ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2527ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2528ffe4fb16SHong Zhang 2529ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25301ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25311ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2532ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25331ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang 2535efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2536ffe4fb16SHong Zhang 2537ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25381ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25391ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2540ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25411ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang 2543ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25442dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25471ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25481ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2549ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang 2551ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2552ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* local diagonal sweep */ 2555ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang } 2557ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang } else { 2559ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2560ffe4fb16SHong Zhang } 2561ffe4fb16SHong Zhang PetscFunctionReturn(0); 2562ffe4fb16SHong Zhang } 2563ffe4fb16SHong Zhang 2564ffe4fb16SHong Zhang #undef __FUNCT__ 2565ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25661302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2567ffe4fb16SHong Zhang { 2568ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2569dfbe8321SBarry Smith PetscErrorCode ierr; 25702798e883SHong Zhang Vec lvec1,bb1; 25712798e883SHong Zhang 25722798e883SHong Zhang PetscFunctionBegin; 257377431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2574899cda47SBarry Smith if (matin->rmap.bs > 1) 25752798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25762798e883SHong Zhang 2577c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25782798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2579bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25802798e883SHong Zhang its--; 25812798e883SHong Zhang } 25822798e883SHong Zhang 25832798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25842798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25852798e883SHong Zhang while (its--){ 25862798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25872798e883SHong Zhang 25882798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25892798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2590efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25912798e883SHong Zhang 25922798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25932798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25942798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25952798e883SHong Zhang 25962798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2597efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25982798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25992798e883SHong Zhang 26002798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26012798e883SHong Zhang 2602c14dc6b6SHong Zhang /* diagonal sweep */ 2603bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26042798e883SHong Zhang } 26052798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26062798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2607c14dc6b6SHong Zhang } else { 2608c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2609c14dc6b6SHong Zhang } 26102798e883SHong Zhang PetscFunctionReturn(0); 26112798e883SHong Zhang } 26122798e883SHong Zhang 2613