1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 16b147fbf3SStefano Zampini { 17b147fbf3SStefano Zampini Mat preallocator; 18b147fbf3SStefano Zampini PetscInt r,rstart,rend; 19b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 20b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 21b147fbf3SStefano Zampini 22b147fbf3SStefano Zampini PetscFunctionBegin; 23b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 24b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 25b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 26b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 279566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap,X[i]->rmap,&cong)); 285f80ce2aSJacob Faibussowitsch PetscCheck(cong,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 29b147fbf3SStefano Zampini } 30b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 319566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B,&bs)); 329566063dSJacob Faibussowitsch PetscCall(MatGetSize(B,&M,&N)); 339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B,&m,&n)); 349566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B),&preallocator)); 359566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator,MATPREALLOCATOR)); 369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator,bs)); 379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator,m,n,M,N)); 389566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 399566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator,&rstart,&rend)); 40b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 41b147fbf3SStefano Zampini PetscInt ncols; 42b147fbf3SStefano Zampini const PetscInt *row; 43b147fbf3SStefano Zampini const PetscScalar *vals; 44b147fbf3SStefano Zampini 45b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 469566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i],r,&ncols,&row,&vals)); 479566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES)); 48b147fbf3SStefano Zampini if (symm && symm[i]) { 499566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES)); 50b147fbf3SStefano Zampini } 519566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i],r,&ncols,&row,&vals)); 52b147fbf3SStefano Zampini } 53b147fbf3SStefano Zampini } 549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY)); 559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY)); 569566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator,fill,B)); 579566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 58b147fbf3SStefano Zampini PetscFunctionReturn(0); 59b147fbf3SStefano Zampini } 60b147fbf3SStefano Zampini 6128d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 62b147fbf3SStefano Zampini { 63b147fbf3SStefano Zampini Mat B; 64b147fbf3SStefano Zampini PetscInt r; 65b147fbf3SStefano Zampini 66b147fbf3SStefano Zampini PetscFunctionBegin; 67b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 6828d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 69b147fbf3SStefano Zampini PetscInt bs; 70b147fbf3SStefano Zampini 719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 739566063dSJacob Faibussowitsch PetscCall(MatSetType(B,newtype)); 749566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A,&bs)); 759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,bs)); 769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"")); 7928d58a37SPierre Jolivet if (!isdense) { 809566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 819566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE)); 829566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 8328d58a37SPierre Jolivet } else { 849566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 8528d58a37SPierre Jolivet } 8628d58a37SPierre Jolivet } else { 8728d58a37SPierre Jolivet B = *newmat; 889566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 8928d58a37SPierre Jolivet } 90b147fbf3SStefano Zampini 919566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 92b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 93b147fbf3SStefano Zampini PetscInt ncols; 94b147fbf3SStefano Zampini const PetscInt *row; 95b147fbf3SStefano Zampini const PetscScalar *vals; 96b147fbf3SStefano Zampini 979566063dSJacob Faibussowitsch PetscCall(MatGetRow(A,r,&ncols,&row,&vals)); 989566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES)); 99eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 100b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 101eb1ec7c1SStefano Zampini PetscInt i; 102eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 1039566063dSJacob Faibussowitsch PetscCall(MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES)); 104eb1ec7c1SStefano Zampini } 105eb1ec7c1SStefano Zampini } else { 1069566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES)); 107eb1ec7c1SStefano Zampini } 108eb1ec7c1SStefano Zampini #else 1099566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES)); 110eb1ec7c1SStefano Zampini #endif 1119566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A,r,&ncols,&row,&vals)); 112b147fbf3SStefano Zampini } 1139566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 1159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 116b147fbf3SStefano Zampini 117b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1189566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 119b147fbf3SStefano Zampini } else { 120b147fbf3SStefano Zampini *newmat = B; 121b147fbf3SStefano Zampini } 122b147fbf3SStefano Zampini PetscFunctionReturn(0); 123b147fbf3SStefano Zampini } 124b147fbf3SStefano Zampini 1257087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 126a30f8f8cSSatish Balay { 127f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 128a30f8f8cSSatish Balay 129a30f8f8cSSatish Balay PetscFunctionBegin; 1309566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1319566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 132a30f8f8cSSatish Balay PetscFunctionReturn(0); 133a30f8f8cSSatish Balay } 134a30f8f8cSSatish Balay 1357087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 136a30f8f8cSSatish Balay { 137f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 138a30f8f8cSSatish Balay 139a30f8f8cSSatish Balay PetscFunctionBegin; 1409566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1419566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 142a30f8f8cSSatish Balay PetscFunctionReturn(0); 143a30f8f8cSSatish Balay } 144a30f8f8cSSatish Balay 145d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 146a30f8f8cSSatish Balay { \ 147a30f8f8cSSatish Balay brow = row/bs; \ 148a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 149a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 150a30f8f8cSSatish Balay bcol = col/bs; \ 151a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 152a30f8f8cSSatish Balay low = 0; high = nrow; \ 153a30f8f8cSSatish Balay while (high-low > 3) { \ 154a30f8f8cSSatish Balay t = (low+high)/2; \ 155a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 156a30f8f8cSSatish Balay else low = t; \ 157a30f8f8cSSatish Balay } \ 158a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 159a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 160a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 161a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 162a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 163a30f8f8cSSatish Balay else *bap = value; \ 164a30f8f8cSSatish Balay goto a_noinsert; \ 165a30f8f8cSSatish Balay } \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 1685f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 169fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 170a30f8f8cSSatish Balay N = nrow++ - 1; \ 171a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 1729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \ 1739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \ 1749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 175a30f8f8cSSatish Balay rp[_i] = bcol; \ 176a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 177e56f5c9eSBarry Smith A->nonzerostate++;\ 178a30f8f8cSSatish Balay a_noinsert:; \ 179a30f8f8cSSatish Balay ailen[brow] = nrow; \ 180a30f8f8cSSatish Balay } 181e5e170daSBarry Smith 182d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 183a30f8f8cSSatish Balay { \ 184a30f8f8cSSatish Balay brow = row/bs; \ 185a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 186a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 187a30f8f8cSSatish Balay bcol = col/bs; \ 188a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 189a30f8f8cSSatish Balay low = 0; high = nrow; \ 190a30f8f8cSSatish Balay while (high-low > 3) { \ 191a30f8f8cSSatish Balay t = (low+high)/2; \ 192a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 193a30f8f8cSSatish Balay else low = t; \ 194a30f8f8cSSatish Balay } \ 195a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 196a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 197a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 198a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 199a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 200a30f8f8cSSatish Balay else *bap = value; \ 201a30f8f8cSSatish Balay goto b_noinsert; \ 202a30f8f8cSSatish Balay } \ 203a30f8f8cSSatish Balay } \ 204a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2055f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 206fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 207a30f8f8cSSatish Balay N = nrow++ - 1; \ 208a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2099566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1)); \ 2109566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \ 2119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 212a30f8f8cSSatish Balay rp[_i] = bcol; \ 213a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 214e56f5c9eSBarry Smith B->nonzerostate++;\ 215a30f8f8cSSatish Balay b_noinsert:; \ 216a30f8f8cSSatish Balay bilen[brow] = nrow; \ 217a30f8f8cSSatish Balay } 218a30f8f8cSSatish Balay 219a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 220476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 221a30f8f8cSSatish Balay */ 222dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 223a30f8f8cSSatish Balay { 224a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 225a30f8f8cSSatish Balay MatScalar value; 226ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2271302d50aSBarry Smith PetscInt i,j,row,col; 228d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 229d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 230d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 231a30f8f8cSSatish Balay 232a30f8f8cSSatish Balay /* Some Variables required in the macro */ 233a30f8f8cSSatish Balay Mat A = baij->A; 234a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2351302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 236a30f8f8cSSatish Balay MatScalar *aa =a->a; 237a30f8f8cSSatish Balay 238a30f8f8cSSatish Balay Mat B = baij->B; 239a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2401302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 241a30f8f8cSSatish Balay MatScalar *ba =b->a; 242a30f8f8cSSatish Balay 2431302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2441302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 245a30f8f8cSSatish Balay MatScalar *ap,*bap; 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay /* for stash */ 2480298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2490298fd71SBarry Smith MatScalar *v_loc = NULL; 250a30f8f8cSSatish Balay 251a30f8f8cSSatish Balay PetscFunctionBegin; 252a30f8f8cSSatish Balay if (!baij->donotstash) { 25359ffdab8SBarry Smith if (n > baij->n_loc) { 2549566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 2559566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 2569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&baij->in_loc)); 2579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&baij->v_loc)); 25826fbe8dcSKarl Rupp 25959ffdab8SBarry Smith baij->n_loc = n; 26059ffdab8SBarry Smith } 26159ffdab8SBarry Smith in_loc = baij->in_loc; 26259ffdab8SBarry Smith v_loc = baij->v_loc; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay for (i=0; i<m; i++) { 266a30f8f8cSSatish Balay if (im[i] < 0) continue; 2675f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 268a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 269a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 270a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27101b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27201b2bd88SHong Zhang if (a->ignore_ltriangular) { 27301b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27426fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 27501b2bd88SHong Zhang } 276a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 277a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 278a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 279a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 280db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 281db4deed7SKarl Rupp else value = v[i+j*m]; 282d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 2839566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 284f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 285f7d195e4SLawrence Mitchell continue; 286f7d195e4SLawrence Mitchell } else { 287f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 288f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 289a30f8f8cSSatish Balay if (mat->was_assembled) { 290a30f8f8cSSatish Balay if (!baij->colmap) { 2919566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 292a30f8f8cSSatish Balay } 293a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2949566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col)); 29571730473SSatish Balay col = col - 1; 296a30f8f8cSSatish Balay #else 29771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 298a30f8f8cSSatish Balay #endif 299a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 3009566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 301a30f8f8cSSatish Balay col = in[j]; 302a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 303a30f8f8cSSatish Balay B = baij->B; 304a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 305a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 306a30f8f8cSSatish Balay ba = b->a; 30771730473SSatish Balay } else col += in[j]%bs; 308a30f8f8cSSatish Balay } else col = in[j]; 309db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 310db4deed7SKarl Rupp else value = v[i+j*m]; 311d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 3129566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 313a30f8f8cSSatish Balay } 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay } else { /* off processor entry */ 3165f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 317a30f8f8cSSatish Balay if (!baij->donotstash) { 3185080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 319a30f8f8cSSatish Balay n_loc = 0; 320a30f8f8cSSatish Balay for (j=0; j<n; j++) { 321f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 322a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 323a30f8f8cSSatish Balay if (roworiented) { 324a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 325a30f8f8cSSatish Balay } else { 326a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 327a30f8f8cSSatish Balay } 328a30f8f8cSSatish Balay n_loc++; 329a30f8f8cSSatish Balay } 3309566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE)); 331a30f8f8cSSatish Balay } 332a30f8f8cSSatish Balay } 333a30f8f8cSSatish Balay } 334a30f8f8cSSatish Balay PetscFunctionReturn(0); 335a30f8f8cSSatish Balay } 336a30f8f8cSSatish Balay 3379fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 33836bd2089SBarry Smith { 33936bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 34036bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34136bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34236bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34336bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34436bd2089SBarry Smith const PetscScalar *value = v; 34536bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 34636bd2089SBarry Smith 34736bd2089SBarry Smith PetscFunctionBegin; 34836bd2089SBarry Smith if (col < row) { 34936bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35036bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35136bd2089SBarry Smith } 35236bd2089SBarry Smith rp = aj + ai[row]; 35336bd2089SBarry Smith ap = aa + bs2*ai[row]; 35436bd2089SBarry Smith rmax = imax[row]; 35536bd2089SBarry Smith nrow = ailen[row]; 35636bd2089SBarry Smith value = v; 35736bd2089SBarry Smith low = 0; 35836bd2089SBarry Smith high = nrow; 35936bd2089SBarry Smith 36036bd2089SBarry Smith while (high-low > 7) { 36136bd2089SBarry Smith t = (low+high)/2; 36236bd2089SBarry Smith if (rp[t] > col) high = t; 36336bd2089SBarry Smith else low = t; 36436bd2089SBarry Smith } 36536bd2089SBarry Smith for (i=low; i<high; i++) { 36636bd2089SBarry Smith if (rp[i] > col) break; 36736bd2089SBarry Smith if (rp[i] == col) { 36836bd2089SBarry Smith bap = ap + bs2*i; 36936bd2089SBarry Smith if (roworiented) { 37036bd2089SBarry Smith if (is == ADD_VALUES) { 37136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37336bd2089SBarry Smith bap[jj] += *value++; 37436bd2089SBarry Smith } 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } else { 37736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37936bd2089SBarry Smith bap[jj] = *value++; 38036bd2089SBarry Smith } 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } else { 38436bd2089SBarry Smith if (is == ADD_VALUES) { 38536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38736bd2089SBarry Smith *bap++ += *value++; 38836bd2089SBarry Smith } 38936bd2089SBarry Smith } 39036bd2089SBarry Smith } else { 39136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39336bd2089SBarry Smith *bap++ = *value++; 39436bd2089SBarry Smith } 39536bd2089SBarry Smith } 39636bd2089SBarry Smith } 39736bd2089SBarry Smith } 39836bd2089SBarry Smith goto noinsert2; 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4025f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 40336bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40436bd2089SBarry Smith N = nrow++ - 1; high++; 40536bd2089SBarry Smith /* shift up all the later entries in this row */ 4069566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 4079566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 40836bd2089SBarry Smith rp[i] = col; 40936bd2089SBarry Smith bap = ap + bs2*i; 41036bd2089SBarry Smith if (roworiented) { 41136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41336bd2089SBarry Smith bap[jj] = *value++; 41436bd2089SBarry Smith } 41536bd2089SBarry Smith } 41636bd2089SBarry Smith } else { 41736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41836bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 41936bd2089SBarry Smith *bap++ = *value++; 42036bd2089SBarry Smith } 42136bd2089SBarry Smith } 42236bd2089SBarry Smith } 42336bd2089SBarry Smith noinsert2:; 42436bd2089SBarry Smith ailen[row] = nrow; 42536bd2089SBarry Smith PetscFunctionReturn(0); 42636bd2089SBarry Smith } 42736bd2089SBarry Smith 42836bd2089SBarry Smith /* 42936bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 43036bd2089SBarry Smith */ 4319fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43236bd2089SBarry Smith { 43336bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 43536bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 43636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 43736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 43836bd2089SBarry Smith const PetscScalar *value = v; 43936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 44036bd2089SBarry Smith 44136bd2089SBarry Smith PetscFunctionBegin; 44236bd2089SBarry Smith rp = aj + ai[row]; 44336bd2089SBarry Smith ap = aa + bs2*ai[row]; 44436bd2089SBarry Smith rmax = imax[row]; 44536bd2089SBarry Smith nrow = ailen[row]; 44636bd2089SBarry Smith low = 0; 44736bd2089SBarry Smith high = nrow; 44836bd2089SBarry Smith value = v; 44936bd2089SBarry Smith while (high-low > 7) { 45036bd2089SBarry Smith t = (low+high)/2; 45136bd2089SBarry Smith if (rp[t] > col) high = t; 45236bd2089SBarry Smith else low = t; 45336bd2089SBarry Smith } 45436bd2089SBarry Smith for (i=low; i<high; i++) { 45536bd2089SBarry Smith if (rp[i] > col) break; 45636bd2089SBarry Smith if (rp[i] == col) { 45736bd2089SBarry Smith bap = ap + bs2*i; 45836bd2089SBarry Smith if (roworiented) { 45936bd2089SBarry Smith if (is == ADD_VALUES) { 46036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46236bd2089SBarry Smith bap[jj] += *value++; 46336bd2089SBarry Smith } 46436bd2089SBarry Smith } 46536bd2089SBarry Smith } else { 46636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46736bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46836bd2089SBarry Smith bap[jj] = *value++; 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } 47236bd2089SBarry Smith } else { 47336bd2089SBarry Smith if (is == ADD_VALUES) { 47436bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 47536bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 47636bd2089SBarry Smith bap[jj] += value[jj]; 47736bd2089SBarry Smith } 47836bd2089SBarry Smith bap += bs; 47936bd2089SBarry Smith } 48036bd2089SBarry Smith } else { 48136bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48336bd2089SBarry Smith bap[jj] = value[jj]; 48436bd2089SBarry Smith } 48536bd2089SBarry Smith bap += bs; 48636bd2089SBarry Smith } 48736bd2089SBarry Smith } 48836bd2089SBarry Smith } 48936bd2089SBarry Smith goto noinsert2; 49036bd2089SBarry Smith } 49136bd2089SBarry Smith } 49236bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4935f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 49436bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 49536bd2089SBarry Smith N = nrow++ - 1; high++; 49636bd2089SBarry Smith /* shift up all the later entries in this row */ 4979566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 4989566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 49936bd2089SBarry Smith rp[i] = col; 50036bd2089SBarry Smith bap = ap + bs2*i; 50136bd2089SBarry Smith if (roworiented) { 50236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 50436bd2089SBarry Smith bap[jj] = *value++; 50536bd2089SBarry Smith } 50636bd2089SBarry Smith } 50736bd2089SBarry Smith } else { 50836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50936bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 51036bd2089SBarry Smith *bap++ = *value++; 51136bd2089SBarry Smith } 51236bd2089SBarry Smith } 51336bd2089SBarry Smith } 51436bd2089SBarry Smith noinsert2:; 51536bd2089SBarry Smith ailen[row] = nrow; 51636bd2089SBarry Smith PetscFunctionReturn(0); 51736bd2089SBarry Smith } 51836bd2089SBarry Smith 51936bd2089SBarry Smith /* 52036bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 52136bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52236bd2089SBarry Smith */ 523dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 524a30f8f8cSSatish Balay { 5250880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 526f15d580aSBarry Smith const MatScalar *value; 527f15d580aSBarry Smith MatScalar *barray =baij->barray; 528ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 529899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 530476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 531476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5320880e062SHong Zhang 533a30f8f8cSSatish Balay PetscFunctionBegin; 5340880e062SHong Zhang if (!barray) { 5359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 5360880e062SHong Zhang baij->barray = barray; 5370880e062SHong Zhang } 5380880e062SHong Zhang 5390880e062SHong Zhang if (roworiented) { 5400880e062SHong Zhang stepval = (n-1)*bs; 5410880e062SHong Zhang } else { 5420880e062SHong Zhang stepval = (m-1)*bs; 5430880e062SHong Zhang } 5440880e062SHong Zhang for (i=0; i<m; i++) { 5450880e062SHong Zhang if (im[i] < 0) continue; 5466bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 5470880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5480880e062SHong Zhang row = im[i] - rstart; 5490880e062SHong Zhang for (j=0; j<n; j++) { 550f3f98c53SJed Brown if (im[i] > in[j]) { 551f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 552e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 553f3f98c53SJed Brown } 5540880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5550880e062SHong Zhang if ((roworiented) && (n == 1)) { 556f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5570880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 558f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5590880e062SHong Zhang } else { /* Here a copy is required */ 5600880e062SHong Zhang if (roworiented) { 5610880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5620880e062SHong Zhang } else { 5630880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5640880e062SHong Zhang } 5650880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5660880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5670880e062SHong Zhang *barray++ = *value++; 5680880e062SHong Zhang } 5690880e062SHong Zhang } 5700880e062SHong Zhang barray -=bs2; 5710880e062SHong Zhang } 5720880e062SHong Zhang 5730880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5740880e062SHong Zhang col = in[j] - cstart; 5759566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 576f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 577f7d195e4SLawrence Mitchell continue; 578f7d195e4SLawrence Mitchell } else { 579f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 5800880e062SHong Zhang if (mat->was_assembled) { 5810880e062SHong Zhang if (!baij->colmap) { 5829566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 5830880e062SHong Zhang } 5840880e062SHong Zhang 5852515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5860880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5871302d50aSBarry Smith { PetscInt data; 5889566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 58908401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5900880e062SHong Zhang } 5910880e062SHong Zhang #else 59208401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5930880e062SHong Zhang #endif 5940880e062SHong Zhang #endif 5950880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5969566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 5970880e062SHong Zhang col = (col - 1)/bs; 5980880e062SHong Zhang #else 5990880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 6000880e062SHong Zhang #endif 6010880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 6029566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6030880e062SHong Zhang col = in[j]; 6040880e062SHong Zhang } 60526fbe8dcSKarl Rupp } else col = in[j]; 6069566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 6070880e062SHong Zhang } 6080880e062SHong Zhang } 6090880e062SHong Zhang } else { 6105f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6110880e062SHong Zhang if (!baij->donotstash) { 6120880e062SHong Zhang if (roworiented) { 6139566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6140880e062SHong Zhang } else { 6159566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6160880e062SHong Zhang } 6170880e062SHong Zhang } 6180880e062SHong Zhang } 6190880e062SHong Zhang } 6200880e062SHong Zhang PetscFunctionReturn(0); 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay 6231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 624a30f8f8cSSatish Balay { 625f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 626d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 627d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 628a30f8f8cSSatish Balay 629a30f8f8cSSatish Balay PetscFunctionBegin; 630a30f8f8cSSatish Balay for (i=0; i<m; i++) { 63154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 63254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 633a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 634a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 635a30f8f8cSSatish Balay for (j=0; j<n; j++) { 63654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 63754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 638a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 639a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6409566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j)); 641a30f8f8cSSatish Balay } else { 642a30f8f8cSSatish Balay if (!baij->colmap) { 6439566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 644a30f8f8cSSatish Balay } 645a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 6469566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data)); 647a30f8f8cSSatish Balay data--; 648a30f8f8cSSatish Balay #else 649a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 650a30f8f8cSSatish Balay #endif 651a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 652a30f8f8cSSatish Balay else { 653a30f8f8cSSatish Balay col = data + idxn[j]%bs; 6549566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j)); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay } 658f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 659a30f8f8cSSatish Balay } 660a30f8f8cSSatish Balay PetscFunctionReturn(0); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay 663dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 664a30f8f8cSSatish Balay { 665a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 666a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 667a30f8f8cSSatish Balay 668a30f8f8cSSatish Balay PetscFunctionBegin; 669a30f8f8cSSatish Balay if (baij->size == 1) { 6709566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A,type,norm)); 671a30f8f8cSSatish Balay } else { 672a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2,&lnorm2)); 6749566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A,type,lnorm2)); 675a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 6769566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B,type,lnorm2)); 677a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 6781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 6798f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 6809566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 6810b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6820b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6830b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6840b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 685899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 686d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6870b8dc8d2SHong Zhang MatScalar *v; 6880b8dc8d2SHong Zhang 6899566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2)); 6909566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum,mat->cmap->N)); 6910b8dc8d2SHong Zhang /* Amat */ 6920b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6930b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6940b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6950b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6960b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6970b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6980b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6990b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7000b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7010b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7020b8dc8d2SHong Zhang /* non-diagonal block */ 7030b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7040b8dc8d2SHong Zhang } 7050b8dc8d2SHong Zhang } 7060b8dc8d2SHong Zhang } 7079566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz*bs*bs)); 7080b8dc8d2SHong Zhang } 7090b8dc8d2SHong Zhang /* Bmat */ 7100b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7110b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7120b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7130b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7140b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7150b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7160b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7170b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7180b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7190b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7200b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7210b8dc8d2SHong Zhang } 7220b8dc8d2SHong Zhang } 7230b8dc8d2SHong Zhang } 7249566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz*bs*bs)); 7250b8dc8d2SHong Zhang } 7261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 7270b8dc8d2SHong Zhang *norm = 0.0; 728d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7290b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7300b8dc8d2SHong Zhang } 7319566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum,rsum2)); 732f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 733a30f8f8cSSatish Balay } 734a30f8f8cSSatish Balay PetscFunctionReturn(0); 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay 737dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 738a30f8f8cSSatish Balay { 739a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 7401302d50aSBarry Smith PetscInt nstash,reallocs; 741a30f8f8cSSatish Balay 742a30f8f8cSSatish Balay PetscFunctionBegin; 74326fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 744a30f8f8cSSatish Balay 7459566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 7469566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs)); 7479566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 7489566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 7499566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 7509566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 751a30f8f8cSSatish Balay PetscFunctionReturn(0); 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay 754dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 755a30f8f8cSSatish Balay { 756a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 757a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 75813f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 759e44c0bd4SBarry Smith PetscInt *row,*col; 760ace3abfcSBarry Smith PetscBool other_disassembled; 76113f74950SBarry Smith PetscMPIInt n; 762ace3abfcSBarry Smith PetscBool r1,r2,r3; 763a30f8f8cSSatish Balay MatScalar *val; 764a30f8f8cSSatish Balay 76591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 766a30f8f8cSSatish Balay PetscFunctionBegin; 7674cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 768a30f8f8cSSatish Balay while (1) { 7699566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 770a30f8f8cSSatish Balay if (!flg) break; 771a30f8f8cSSatish Balay 772a30f8f8cSSatish Balay for (i=0; i<n;) { 773a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 77426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 77526fbe8dcSKarl Rupp if (row[j] != rstart) break; 77626fbe8dcSKarl Rupp } 777a30f8f8cSSatish Balay if (j < n) ncols = j-i; 778a30f8f8cSSatish Balay else ncols = n-i; 779a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 781a30f8f8cSSatish Balay i = j; 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay } 7849566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 785a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 786a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 787a30f8f8cSSatish Balay restore the original flags */ 788a30f8f8cSSatish Balay r1 = baij->roworiented; 789a30f8f8cSSatish Balay r2 = a->roworiented; 79091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 79126fbe8dcSKarl Rupp 792a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 793a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 79426fbe8dcSKarl Rupp 79591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 796a30f8f8cSSatish Balay while (1) { 7979566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg)); 798a30f8f8cSSatish Balay if (!flg) break; 799a30f8f8cSSatish Balay 800a30f8f8cSSatish Balay for (i=0; i<n;) { 801a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 80326fbe8dcSKarl Rupp if (row[j] != rstart) break; 80426fbe8dcSKarl Rupp } 805a30f8f8cSSatish Balay if (j < n) ncols = j-i; 806a30f8f8cSSatish Balay else ncols = n-i; 8079566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode)); 808a30f8f8cSSatish Balay i = j; 809a30f8f8cSSatish Balay } 810a30f8f8cSSatish Balay } 8119566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 81226fbe8dcSKarl Rupp 813a30f8f8cSSatish Balay baij->roworiented = r1; 814a30f8f8cSSatish Balay a->roworiented = r2; 81526fbe8dcSKarl Rupp 81691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 817a30f8f8cSSatish Balay } 818a30f8f8cSSatish Balay 8199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A,mode)); 8209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A,mode)); 821a30f8f8cSSatish Balay 822a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8236aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 824a30f8f8cSSatish Balay /* 825a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 826a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 827a30f8f8cSSatish Balay */ 828a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 829*5f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)mat))); 830a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 8319566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 832a30f8f8cSSatish Balay } 833a30f8f8cSSatish Balay } 834a30f8f8cSSatish Balay 835a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 8369566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ 837a30f8f8cSSatish Balay } 8389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B,mode)); 8399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B,mode)); 840a30f8f8cSSatish Balay 8419566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 84226fbe8dcSKarl Rupp 843f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8444f9cfa9eSBarry Smith 8454f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8464f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 847e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 849e56f5c9eSBarry Smith } 850a30f8f8cSSatish Balay PetscFunctionReturn(0); 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay 853dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8549804daf3SBarry Smith #include <petscdraw.h> 8556849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 856a30f8f8cSSatish Balay { 857a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 858d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8597da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 860ace3abfcSBarry Smith PetscBool iascii,isdraw; 861b0a32e0cSBarry Smith PetscViewer sviewer; 862f3ef73ceSBarry Smith PetscViewerFormat format; 863a30f8f8cSSatish Balay 864a30f8f8cSSatish Balay PetscFunctionBegin; 8659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 8669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 86732077d6dSBarry Smith if (iascii) { 8689566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 869456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 870a30f8f8cSSatish Balay MatInfo info; 8719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 8729566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 8739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8749566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory)); 8759566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info)); 8769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 8779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info)); 8789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 8799566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 8829566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx,viewer)); 883a30f8f8cSSatish Balay PetscFunctionReturn(0); 884fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 8859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," block size is %" PetscInt_FMT "\n",bs)); 886a30f8f8cSSatish Balay PetscFunctionReturn(0); 887c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 888c1490034SHong Zhang PetscFunctionReturn(0); 889a30f8f8cSSatish Balay } 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay 892a30f8f8cSSatish Balay if (isdraw) { 893b0a32e0cSBarry Smith PetscDraw draw; 894ace3abfcSBarry Smith PetscBool isnull; 8959566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 8969566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 89745f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 898a30f8f8cSSatish Balay } 899a30f8f8cSSatish Balay 9007da1fb6eSBarry Smith { 901a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 902a30f8f8cSSatish Balay Mat A; 90365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 90465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 905d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 906a30f8f8cSSatish Balay MatScalar *a; 9073e219373SBarry Smith const char *matname; 908a30f8f8cSSatish Balay 909f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9109566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 911dd400576SPatrick Sanan if (rank == 0) { 9129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 913a30f8f8cSSatish Balay } else { 9149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 915a30f8f8cSSatish Balay } 9169566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPISBAIJ)); 9179566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL)); 9189566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 9199566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 920a30f8f8cSSatish Balay 921a30f8f8cSSatish Balay /* copy over the A part */ 92265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 923a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 9249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 925a30f8f8cSSatish Balay 926a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 927e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 92826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 929a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 930e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 931a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 9329566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 93326fbe8dcSKarl Rupp col++; 93426fbe8dcSKarl Rupp a += bs; 935a30f8f8cSSatish Balay } 936a30f8f8cSSatish Balay } 937a30f8f8cSSatish Balay } 938a30f8f8cSSatish Balay /* copy over the B part */ 93965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 94065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 941a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 942e9f7bc9eSHong Zhang 943e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 94426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 945a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 946a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 947a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 9489566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 94926fbe8dcSKarl Rupp col++; 95026fbe8dcSKarl Rupp a += bs; 951a30f8f8cSSatish Balay } 952a30f8f8cSSatish Balay } 953a30f8f8cSSatish Balay } 9549566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 9569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 957a30f8f8cSSatish Balay /* 958a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 959b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 960a30f8f8cSSatish Balay */ 9619566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 9629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat,&matname)); 963dd400576SPatrick Sanan if (rank == 0) { 9649566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname)); 9659566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer)); 966a30f8f8cSSatish Balay } 9679566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 9689566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9699566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 970a30f8f8cSSatish Balay } 971a30f8f8cSSatish Balay PetscFunctionReturn(0); 972a30f8f8cSSatish Balay } 973a30f8f8cSSatish Balay 974618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 975618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 976d1654148SHong Zhang 977dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 978a30f8f8cSSatish Balay { 979ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 980a30f8f8cSSatish Balay 981a30f8f8cSSatish Balay PetscFunctionBegin; 9829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 9839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 9849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 9859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 986d1654148SHong Zhang if (iascii || isdraw || issocket) { 9879566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer)); 9881baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat,viewer)); 989a30f8f8cSSatish Balay PetscFunctionReturn(0); 990a30f8f8cSSatish Balay } 991a30f8f8cSSatish Balay 992dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 993a30f8f8cSSatish Balay { 994a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 995a30f8f8cSSatish Balay 996a30f8f8cSSatish Balay PetscFunctionBegin; 997a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 998c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 999a30f8f8cSSatish Balay #endif 10009566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 10019566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 10029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 10039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 1004a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 10059566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 1006a30f8f8cSSatish Balay #else 10079566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 1008a30f8f8cSSatish Balay #endif 10099566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 10109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 10119566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 10129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0)); 10139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec0b)); 10149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1)); 10159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1a)); 10169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->slvec1b)); 10179566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->sMvctx)); 10189566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 10199566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 10209566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->hd)); 10219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->diag)); 10229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->bb1)); 10239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->xx1)); 1024ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 10259566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->setvaluescopy)); 1026a30f8f8cSSatish Balay #endif 10279566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 10289566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 10299566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 10309566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1031901853e0SKris Buschelman 10329566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 10339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 10349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 10359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL)); 10369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL)); 10376214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL)); 10396214f412SHong Zhang #endif 1040d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 10419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL)); 1042d24d4204SJose E. Roman #endif 10439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL)); 10449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL)); 1045a30f8f8cSSatish Balay PetscFunctionReturn(0); 1046a30f8f8cSSatish Balay } 1047a30f8f8cSSatish Balay 1048547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1049547795f9SHong Zhang { 1050547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1051eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 10526de40e93SBarry Smith PetscScalar *from; 10536de40e93SBarry Smith const PetscScalar *x; 1054547795f9SHong Zhang 1055547795f9SHong Zhang PetscFunctionBegin; 1056547795f9SHong Zhang /* diagonal part */ 10579566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a)); 10589566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,0.0)); 1059547795f9SHong Zhang 1060547795f9SHong Zhang /* subdiagonal part */ 10615f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name); 10629566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b)); 1063547795f9SHong Zhang 1064547795f9SHong Zhang /* copy x into the vec slvec0 */ 10659566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 10669566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 1067547795f9SHong Zhang 10689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 10699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 10709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 1071547795f9SHong Zhang 10729566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 10739566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1074547795f9SHong Zhang /* supperdiagonal part */ 10759566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy)); 1076547795f9SHong Zhang PetscFunctionReturn(0); 1077547795f9SHong Zhang } 1078547795f9SHong Zhang 1079dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1080a9d4b620SHong Zhang { 1081a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1082eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1083d9ca1df4SBarry Smith PetscScalar *from; 1084d9ca1df4SBarry Smith const PetscScalar *x; 1085a9d4b620SHong Zhang 1086a9d4b620SHong Zhang PetscFunctionBegin; 1087a9d4b620SHong Zhang /* diagonal part */ 10889566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,a->slvec1a)); 10899566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,0.0)); 1090a9d4b620SHong Zhang 1091a9d4b620SHong Zhang /* subdiagonal part */ 10929566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b)); 1093fc165ae2SBarry Smith 1094a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10959566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 10969566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 1097a9d4b620SHong Zhang 10989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 10999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 11009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 1101fc165ae2SBarry Smith 11029566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 11039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1104a9d4b620SHong Zhang /* supperdiagonal part */ 11059566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy)); 1106a9d4b620SHong Zhang PetscFunctionReturn(0); 1107a9d4b620SHong Zhang } 1108a9d4b620SHong Zhang 1109eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1110eb1ec7c1SStefano Zampini { 1111eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1112eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1113eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1114eb1ec7c1SStefano Zampini const PetscScalar *x; 1115eb1ec7c1SStefano Zampini 1116eb1ec7c1SStefano Zampini PetscFunctionBegin; 1117eb1ec7c1SStefano Zampini /* diagonal part */ 11189566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a)); 11199566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,zero)); 1120eb1ec7c1SStefano Zampini 1121eb1ec7c1SStefano Zampini /* subdiagonal part */ 11225f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose,PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s",((PetscObject)a->B)->type_name); 11239566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b)); 1124eb1ec7c1SStefano Zampini 1125eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11269566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 11279566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 11299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 1130eb1ec7c1SStefano Zampini 11319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 11329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11339566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1134eb1ec7c1SStefano Zampini 1135eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11369566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz)); 1137eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1138eb1ec7c1SStefano Zampini } 1139eb1ec7c1SStefano Zampini 1140dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1141a30f8f8cSSatish Balay { 1142de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1143d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1144d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1145d9ca1df4SBarry Smith const PetscScalar *x; 1146a9d4b620SHong Zhang 1147a9d4b620SHong Zhang PetscFunctionBegin; 1148a9d4b620SHong Zhang /* diagonal part */ 11499566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a)); 11509566063dSJacob Faibussowitsch PetscCall(VecSet(a->slvec1b,zero)); 1151a9d4b620SHong Zhang 1152a9d4b620SHong Zhang /* subdiagonal part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->slvec0b)); 1154a9d4b620SHong Zhang 1155a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11569566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&from)); 11579566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 11589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 11599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&from)); 1160a9d4b620SHong Zhang 11619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 11629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 11639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD)); 1164a9d4b620SHong Zhang 1165a9d4b620SHong Zhang /* supperdiagonal part */ 11669566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz)); 1167a9d4b620SHong Zhang PetscFunctionReturn(0); 1168a9d4b620SHong Zhang } 1169a9d4b620SHong Zhang 1170a30f8f8cSSatish Balay /* 1171a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1172a30f8f8cSSatish Balay diagonal block 1173a30f8f8cSSatish Balay */ 1174dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1175a30f8f8cSSatish Balay { 1176a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1177a30f8f8cSSatish Balay 1178a30f8f8cSSatish Balay PetscFunctionBegin; 117908401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11809566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A,v)); 1181a30f8f8cSSatish Balay PetscFunctionReturn(0); 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay 1184f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1185a30f8f8cSSatish Balay { 1186a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1187a30f8f8cSSatish Balay 1188a30f8f8cSSatish Balay PetscFunctionBegin; 11899566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 11909566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 1191a30f8f8cSSatish Balay PetscFunctionReturn(0); 1192a30f8f8cSSatish Balay } 1193a30f8f8cSSatish Balay 11941302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1195a30f8f8cSSatish Balay { 1196d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1197d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1198d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1199d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1200899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1201d0d4cfc2SHong Zhang 1202a30f8f8cSSatish Balay PetscFunctionBegin; 12035f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1204d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1205d0d4cfc2SHong Zhang 1206d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1207d0d4cfc2SHong Zhang /* 1208d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1209d0d4cfc2SHong Zhang */ 1210d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1211d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1212d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1213d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1214d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 121526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1216d0d4cfc2SHong Zhang } 12179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices)); 1218d0d4cfc2SHong Zhang } 1219d0d4cfc2SHong Zhang 12205f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1221d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1222d0d4cfc2SHong Zhang 1223d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1224f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1225f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 12269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA)); 12279566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB)); 1228d0d4cfc2SHong Zhang nztot = nzA + nzB; 1229d0d4cfc2SHong Zhang 1230d0d4cfc2SHong Zhang cmap = mat->garray; 1231d0d4cfc2SHong Zhang if (v || idx) { 1232d0d4cfc2SHong Zhang if (nztot) { 1233d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1234d0d4cfc2SHong Zhang PetscInt imark = -1; 1235d0d4cfc2SHong Zhang if (v) { 1236d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1237d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1238d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1239d0d4cfc2SHong Zhang else break; 1240d0d4cfc2SHong Zhang } 1241d0d4cfc2SHong Zhang imark = i; 1242d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1243d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1244d0d4cfc2SHong Zhang } 1245d0d4cfc2SHong Zhang if (idx) { 1246d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1247d0d4cfc2SHong Zhang if (imark > -1) { 1248d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1249d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang } else { 1252d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 125326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1254d0d4cfc2SHong Zhang else break; 1255d0d4cfc2SHong Zhang } 1256d0d4cfc2SHong Zhang imark = i; 1257d0d4cfc2SHong Zhang } 1258d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1259d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1260d0d4cfc2SHong Zhang } 1261d0d4cfc2SHong Zhang } else { 1262f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1263f4259b30SLisandro Dalcin if (v) *v = NULL; 1264d0d4cfc2SHong Zhang } 1265d0d4cfc2SHong Zhang } 1266d0d4cfc2SHong Zhang *nz = nztot; 12679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA)); 12689566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB)); 1269a30f8f8cSSatish Balay PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12721302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1273a30f8f8cSSatish Balay { 1274a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1275a30f8f8cSSatish Balay 1276a30f8f8cSSatish Balay PetscFunctionBegin; 12775f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1278a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1279a30f8f8cSSatish Balay PetscFunctionReturn(0); 1280a30f8f8cSSatish Balay } 1281a30f8f8cSSatish Balay 1282d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1283d0d4cfc2SHong Zhang { 1284d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1285d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1286d0d4cfc2SHong Zhang 1287d0d4cfc2SHong Zhang PetscFunctionBegin; 1288d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1289d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1290d0d4cfc2SHong Zhang } 1291d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1292d0d4cfc2SHong Zhang { 1293d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1294d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1295d0d4cfc2SHong Zhang 1296d0d4cfc2SHong Zhang PetscFunctionBegin; 1297d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1298d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1299d0d4cfc2SHong Zhang } 1300d0d4cfc2SHong Zhang 13012726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 13022726fb6dSPierre Jolivet { 13035f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 13045f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13052726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 13062726fb6dSPierre Jolivet 13079566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13089566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13095f80ce2aSJacob Faibussowitsch } 13102726fb6dSPierre Jolivet PetscFunctionReturn(0); 13112726fb6dSPierre Jolivet } 13122726fb6dSPierre Jolivet 131399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 131499cafbc1SBarry Smith { 131599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 131699cafbc1SBarry Smith 131799cafbc1SBarry Smith PetscFunctionBegin; 13189566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13199566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 132099cafbc1SBarry Smith PetscFunctionReturn(0); 132199cafbc1SBarry Smith } 132299cafbc1SBarry Smith 132399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 132499cafbc1SBarry Smith { 132599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 132699cafbc1SBarry Smith 132799cafbc1SBarry Smith PetscFunctionBegin; 13289566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13299566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 133099cafbc1SBarry Smith PetscFunctionReturn(0); 133199cafbc1SBarry Smith } 133299cafbc1SBarry Smith 13337dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 133436032a97SHong Zhang Input: isrow - distributed(parallel), 133536032a97SHong Zhang iscol_local - locally owned (seq) 133636032a97SHong Zhang */ 133736032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13388f46ffcaSHong Zhang { 13398f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13408f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 134136032a97SHong Zhang 134236032a97SHong Zhang PetscFunctionBegin; 13439566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&sz1)); 13449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local,&sz2)); 13451098a8e8SHong Zhang if (sz1 > sz2) { 13461098a8e8SHong Zhang *flg = PETSC_FALSE; 13471098a8e8SHong Zhang PetscFunctionReturn(0); 13481098a8e8SHong Zhang } 13498f46ffcaSHong Zhang 13509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&ptr1)); 13519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&ptr2)); 13528f46ffcaSHong Zhang 13539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1,&a1)); 13549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2,&a2)); 13559566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1,ptr1,sz1)); 13569566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2,ptr2,sz2)); 13579566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1,a1)); 13589566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2,a2)); 13598f46ffcaSHong Zhang 13608f46ffcaSHong Zhang nmatch=0; 13618f46ffcaSHong Zhang k = 0; 13628f46ffcaSHong Zhang for (i=0; i<sz1; i++) { 13638f46ffcaSHong Zhang for (j=k; j<sz2; j++) { 13648f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13658f46ffcaSHong Zhang k = j; nmatch++; 13668f46ffcaSHong Zhang break; 13678f46ffcaSHong Zhang } 13688f46ffcaSHong Zhang } 13698f46ffcaSHong Zhang } 13709566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&ptr1)); 13719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&ptr2)); 13729566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13739566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13741098a8e8SHong Zhang if (nmatch < sz1) { 13751098a8e8SHong Zhang *flg = PETSC_FALSE; 13761098a8e8SHong Zhang } else { 13771098a8e8SHong Zhang *flg = PETSC_TRUE; 13781098a8e8SHong Zhang } 137936032a97SHong Zhang PetscFunctionReturn(0); 13808f46ffcaSHong Zhang } 138136032a97SHong Zhang 13827dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 138336032a97SHong Zhang { 138436032a97SHong Zhang IS iscol_local; 138536032a97SHong Zhang PetscInt csize; 138636032a97SHong Zhang PetscBool isequal; 138736032a97SHong Zhang 138836032a97SHong Zhang PetscFunctionBegin; 13899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&csize)); 139036032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13919566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local)); 13925f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 139336032a97SHong Zhang } else { 1394068661f9SToby Isaac PetscBool issorted; 1395068661f9SToby Isaac 13969566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 13979566063dSJacob Faibussowitsch PetscCall(ISEqual_private(isrow,iscol_local,&isequal)); 13989566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 13995f80ce2aSJacob Faibussowitsch PetscCheck(isequal && issorted,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow and be sorted"); 14008f46ffcaSHong Zhang } 14018f46ffcaSHong Zhang 14027dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14039566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat)); 14048f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14059566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local)); 14069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14078f46ffcaSHong Zhang } 14088f46ffcaSHong Zhang PetscFunctionReturn(0); 14098f46ffcaSHong Zhang } 14108f46ffcaSHong Zhang 1411dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1412a30f8f8cSSatish Balay { 1413a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1414a30f8f8cSSatish Balay 1415a30f8f8cSSatish Balay PetscFunctionBegin; 14169566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14179566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 1418a30f8f8cSSatish Balay PetscFunctionReturn(0); 1419a30f8f8cSSatish Balay } 1420a30f8f8cSSatish Balay 1421dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1422a30f8f8cSSatish Balay { 1423a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1424a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 14253966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1426a30f8f8cSSatish Balay 1427a30f8f8cSSatish Balay PetscFunctionBegin; 1428d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 142926fbe8dcSKarl Rupp 14309566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 143126fbe8dcSKarl Rupp 1432a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1433a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 143426fbe8dcSKarl Rupp 14359566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 143626fbe8dcSKarl Rupp 1437a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1438a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1439a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1440a30f8f8cSSatish Balay info->nz_used = isend[0]; 1441a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1442a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1443a30f8f8cSSatish Balay info->memory = isend[3]; 1444a30f8f8cSSatish Balay info->mallocs = isend[4]; 1445a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14461c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 144726fbe8dcSKarl Rupp 1448a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1449a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1450a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1451a30f8f8cSSatish Balay info->memory = irecv[3]; 1452a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1453a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14541c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 145526fbe8dcSKarl Rupp 1456a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1457a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1458a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1459a30f8f8cSSatish Balay info->memory = irecv[3]; 1460a30f8f8cSSatish Balay info->mallocs = irecv[4]; 146198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1462a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1463a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1464a30f8f8cSSatish Balay info->factor_mallocs = 0; 1465a30f8f8cSSatish Balay PetscFunctionReturn(0); 1466a30f8f8cSSatish Balay } 1467a30f8f8cSSatish Balay 1468ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1469a30f8f8cSSatish Balay { 1470a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1471d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1472a30f8f8cSSatish Balay 1473a30f8f8cSSatish Balay PetscFunctionBegin; 1474e98b92d7SKris Buschelman switch (op) { 1475512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1476e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1478a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1479c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1480e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 148143674050SBarry Smith MatCheckPreallocated(A,1); 14829566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14839566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 1484e98b92d7SKris Buschelman break; 1485e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 148643674050SBarry Smith MatCheckPreallocated(A,1); 14874e0d8c25SBarry Smith a->roworiented = flg; 148826fbe8dcSKarl Rupp 14899566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14909566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 1491e98b92d7SKris Buschelman break; 14928c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1493071fcb05SBarry Smith case MAT_SORTED_FULL: 14949566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 1495e98b92d7SKris Buschelman break; 1496e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14974e0d8c25SBarry Smith a->donotstash = flg; 1498e98b92d7SKris Buschelman break; 1499e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 15004e0d8c25SBarry Smith a->ht_flag = flg; 1501e98b92d7SKris Buschelman break; 15029a4540c5SBarry Smith case MAT_HERMITIAN: 150343674050SBarry Smith MatCheckPreallocated(A,1); 15049566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 15050f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1506eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1507547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1508eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1509eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1510eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1511b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1512eb1ec7c1SStefano Zampini } 15130f2140c7SStefano Zampini #endif 1514eeffb40dSHong Zhang break; 1515ffa07934SHong Zhang case MAT_SPD: 151677e54ba9SKris Buschelman case MAT_SYMMETRIC: 151743674050SBarry Smith MatCheckPreallocated(A,1); 15189566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 1519eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1520eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1521eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1522eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1523eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1524eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1525eb1ec7c1SStefano Zampini } 1526eb1ec7c1SStefano Zampini #endif 1527eeffb40dSHong Zhang break; 152877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 152943674050SBarry Smith MatCheckPreallocated(A,1); 15309566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 1531eeffb40dSHong Zhang break; 15329a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1533b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15345f80ce2aSJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 15359566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 153677e54ba9SKris Buschelman break; 1537b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1538b94d7dedSBarry Smith break; 1539d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15404e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1541d0d4cfc2SHong Zhang break; 1542d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15434e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1544d0d4cfc2SHong Zhang break; 1545d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15464e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1547d0d4cfc2SHong Zhang break; 1548e98b92d7SKris Buschelman default: 154998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1550a30f8f8cSSatish Balay } 1551a30f8f8cSSatish Balay PetscFunctionReturn(0); 1552a30f8f8cSSatish Balay } 1553a30f8f8cSSatish Balay 1554fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1555a30f8f8cSSatish Balay { 1556a30f8f8cSSatish Balay PetscFunctionBegin; 15577fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A,*B)); 1558cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15599566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A,MAT_COPY_VALUES,B)); 1560cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15619566063dSJacob Faibussowitsch PetscCall(MatCopy(A,*B,SAME_NONZERO_PATTERN)); 1562fc4dec0aSBarry Smith } 15638115998fSBarry Smith PetscFunctionReturn(0); 1564a30f8f8cSSatish Balay } 1565a30f8f8cSSatish Balay 1566dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1567a30f8f8cSSatish Balay { 1568a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1569a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 15705e90f9d9SHong Zhang PetscInt nv,m,n; 1571ace3abfcSBarry Smith PetscBool flg; 1572a30f8f8cSSatish Balay 1573a30f8f8cSSatish Balay PetscFunctionBegin; 1574a30f8f8cSSatish Balay if (ll != rr) { 15759566063dSJacob Faibussowitsch PetscCall(VecEqual(ll,rr,&flg)); 15765f80ce2aSJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same"); 1577a30f8f8cSSatish Balay } 1578b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1579b3bf805bSHong Zhang 15809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,&n)); 15815f80ce2aSJacob Faibussowitsch PetscCheck(m == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same",m,n); 1582b3bf805bSHong Zhang 15839566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&nv)); 15845f80ce2aSJacob Faibussowitsch PetscCheck(nv==n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15855e90f9d9SHong Zhang 15869566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 15875e90f9d9SHong Zhang 15885e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15899566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 15905e90f9d9SHong Zhang 15915e90f9d9SHong Zhang /* scale the diagonal part */ 15929566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 1593a30f8f8cSSatish Balay 15945e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 15959566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 15969566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec)); 1597a30f8f8cSSatish Balay PetscFunctionReturn(0); 1598a30f8f8cSSatish Balay } 1599a30f8f8cSSatish Balay 1600dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1601a30f8f8cSSatish Balay { 1602f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1603a30f8f8cSSatish Balay 1604a30f8f8cSSatish Balay PetscFunctionBegin; 16059566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 1606a30f8f8cSSatish Balay PetscFunctionReturn(0); 1607a30f8f8cSSatish Balay } 1608a30f8f8cSSatish Balay 16096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1610a30f8f8cSSatish Balay 1611ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1612a30f8f8cSSatish Balay { 1613a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1614a30f8f8cSSatish Balay Mat a,b,c,d; 1615ace3abfcSBarry Smith PetscBool flg; 1616a30f8f8cSSatish Balay 1617a30f8f8cSSatish Balay PetscFunctionBegin; 1618a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1619a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1620a30f8f8cSSatish Balay 16219566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 1622abc0a331SBarry Smith if (flg) { 16239566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 1624a30f8f8cSSatish Balay } 16251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 1626a30f8f8cSSatish Balay PetscFunctionReturn(0); 1627a30f8f8cSSatish Balay } 1628a30f8f8cSSatish Balay 16293c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16303c896bc6SHong Zhang { 16314c7a3774SStefano Zampini PetscBool isbaij; 16323c896bc6SHong Zhang 16333c896bc6SHong Zhang PetscFunctionBegin; 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"")); 16355f80ce2aSJacob Faibussowitsch PetscCheck(isbaij,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 16363c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16373c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16399566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 16409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16413c896bc6SHong Zhang } else { 16424c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16434c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16444c7a3774SStefano Zampini 16459566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 16469566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 16473c896bc6SHong Zhang } 16489566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16493c896bc6SHong Zhang PetscFunctionReturn(0); 16503c896bc6SHong Zhang } 16513c896bc6SHong Zhang 16524994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1653273d9f13SBarry Smith { 1654273d9f13SBarry Smith PetscFunctionBegin; 16559566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 1656273d9f13SBarry Smith PetscFunctionReturn(0); 1657273d9f13SBarry Smith } 1658a5e6ed63SBarry Smith 16594fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16604fe895cdSHong Zhang { 16614fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16624fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16634fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16644fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16654fe895cdSHong Zhang 16664fe895cdSHong Zhang PetscFunctionBegin; 16674fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16684fe895cdSHong Zhang PetscScalar alpha = a; 16694fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16704fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 16719566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz,&bnz)); 1672792fecdfSBarry Smith PetscCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16734fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16744fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 16759566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz,&bnz)); 1676792fecdfSBarry Smith PetscCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1678ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16799566063dSJacob Faibussowitsch PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)); 16809566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y,a,X,str)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE)); 16824fe895cdSHong Zhang } else { 16834de5dceeSHong Zhang Mat B; 16844de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16855f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 16869566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16879566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d)); 16899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o)); 16909566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B)); 16919566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name)); 16929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N)); 16939566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B,Y,Y)); 16949566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPISBAIJ)); 16959566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d)); 16969566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o)); 16979566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o)); 16989566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str)); 16999566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y,&B)); 17009566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17019566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17029566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17039566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17044fe895cdSHong Zhang } 17054fe895cdSHong Zhang PetscFunctionReturn(0); 17064fe895cdSHong Zhang } 17074fe895cdSHong Zhang 17087dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1709a5e6ed63SBarry Smith { 17101302d50aSBarry Smith PetscInt i; 1711afebec48SHong Zhang PetscBool flg; 1712a5e6ed63SBarry Smith 17136849ba73SBarry Smith PetscFunctionBegin; 17149566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B)); /* B[] are sbaij matrices */ 1715a5e6ed63SBarry Smith for (i=0; i<n; i++) { 17169566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i],icol[i],&flg)); 1717afebec48SHong Zhang if (!flg) { 17189566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 1719a5e6ed63SBarry Smith } 17204dcd73b1SHong Zhang } 1721a5e6ed63SBarry Smith PetscFunctionReturn(0); 1722a5e6ed63SBarry Smith } 1723a5e6ed63SBarry Smith 17247d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17257d68702bSBarry Smith { 17267d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17276f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17287d68702bSBarry Smith 17297d68702bSBarry Smith PetscFunctionBegin; 17306f33a894SBarry Smith if (!Y->preallocated) { 17319566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL)); 17326f33a894SBarry Smith } else if (!aij->nz) { 1733b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17349566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL)); 1735b83222d8SBarry Smith aij->nonew = nonew; 17367d68702bSBarry Smith } 17379566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 17387d68702bSBarry Smith PetscFunctionReturn(0); 17397d68702bSBarry Smith } 17407d68702bSBarry Smith 17413b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17423b49f96aSBarry Smith { 17433b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17443b49f96aSBarry Smith 17453b49f96aSBarry Smith PetscFunctionBegin; 17465f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17479566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 17483b49f96aSBarry Smith if (d) { 17493b49f96aSBarry Smith PetscInt rstart; 17509566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 17513b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17523b49f96aSBarry Smith 17533b49f96aSBarry Smith } 17543b49f96aSBarry Smith PetscFunctionReturn(0); 17553b49f96aSBarry Smith } 17563b49f96aSBarry Smith 1757a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1758a5b7ff6bSBarry Smith { 1759a5b7ff6bSBarry Smith PetscFunctionBegin; 1760a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1761a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1762a5b7ff6bSBarry Smith } 17633b49f96aSBarry Smith 1764a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17653964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1766a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1767a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1768a9d4b620SHong Zhang MatMult_MPISBAIJ, 176997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1770431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1771431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1772f4259b30SLisandro Dalcin NULL, 1773f4259b30SLisandro Dalcin NULL, 1774f4259b30SLisandro Dalcin NULL, 1775f4259b30SLisandro Dalcin /* 10*/ NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 177841f059aeSBarry Smith MatSOR_MPISBAIJ, 1779a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 178097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1781a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1782a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1783a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1784a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 178597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1786a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1787a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1788a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1789f4259b30SLisandro Dalcin /* 24*/ NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 17944994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1798f4259b30SLisandro Dalcin NULL, 1799d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18057dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1806d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1807a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18083c896bc6SHong Zhang MatCopy_MPISBAIJ, 1809f4259b30SLisandro Dalcin /* 44*/ NULL, 1810a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18117d68702bSBarry Smith MatShift_MPISBAIJ, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin /* 49*/ NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /* 54*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1822f4259b30SLisandro Dalcin NULL, 1823a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18247dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin /* 64*/ NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1835f4259b30SLisandro Dalcin NULL, 183628d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin /* 74*/ NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin /* 79*/ NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 18485bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1849f4259b30SLisandro Dalcin /* 84*/ NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin /* 89*/ NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin /* 94*/ NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin /* 99*/ NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 18672726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin /*104*/ NULL, 187099cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1871d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1872d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 187395936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1874f4259b30SLisandro Dalcin /*109*/ NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 18783b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1879f4259b30SLisandro Dalcin /*114*/ NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin /*119*/ NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin /*124*/ NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin /*129*/ NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin /*134*/ NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin NULL, 190446533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin NULL, 1909d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1910d70f29a3SPierre Jolivet NULL, 1911d70f29a3SPierre Jolivet NULL, 191299a7f59eSMark Adams NULL, 191399a7f59eSMark Adams NULL, 19147fb60732SBarry Smith NULL, 19157fb60732SBarry Smith /*150*/ NULL 191699cafbc1SBarry Smith }; 1917a30f8f8cSSatish Balay 1918b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1919a23d5eceSKris Buschelman { 1920476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 1921535b19f3SBarry Smith PetscInt i,mbs,Mbs; 19225d2a9ed1SStefano Zampini PetscMPIInt size; 1923a23d5eceSKris Buschelman 1924a23d5eceSKris Buschelman PetscFunctionBegin; 19259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,PetscAbs(bs))); 19269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19279566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19289566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 19295f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->N,B->cmap->N); 19305f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->n,B->cmap->n); 1931899cda47SBarry Smith 1932d0f46423SBarry Smith mbs = B->rmap->n/bs; 1933d0f46423SBarry Smith Mbs = B->rmap->N/bs; 19345f80ce2aSJacob Faibussowitsch PetscCheck(mbs*bs == B->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT,B->rmap->N,bs); 1935a23d5eceSKris Buschelman 1936d0f46423SBarry Smith B->rmap->bs = bs; 1937a23d5eceSKris Buschelman b->bs2 = bs*bs; 1938a23d5eceSKris Buschelman b->mbs = mbs; 1939a23d5eceSKris Buschelman b->Mbs = Mbs; 1940de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1941de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1942a23d5eceSKris Buschelman 1943a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1944d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1945a23d5eceSKris Buschelman } 1946d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1947d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1948a23d5eceSKris Buschelman 1949d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1950d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1951a23d5eceSKris Buschelman 1952cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 19539566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 1954cb7b82ddSBarry Smith #else 19559566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1956cb7b82ddSBarry Smith #endif 19579566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19589566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19599566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19629566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19659566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1966cb7b82ddSBarry Smith 1967cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 19689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 19699566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19709566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 19719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0)); 19729566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQBAIJ)); 19739566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 1974cb7b82ddSBarry Smith 1975526dfc15SBarry Smith if (!B->preallocated) { 19769566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 19779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 19789566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQSBAIJ)); 19799566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 19809566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash)); 1981526dfc15SBarry Smith } 1982a23d5eceSKris Buschelman 19839566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz)); 19849566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz)); 198526fbe8dcSKarl Rupp 1986526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1987cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1988cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 1989a23d5eceSKris Buschelman PetscFunctionReturn(0); 1990a23d5eceSKris Buschelman } 1991a23d5eceSKris Buschelman 1992dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1993dfb205c3SBarry Smith { 199402106b30SBarry Smith PetscInt m,rstart,cend; 1995f4259b30SLisandro Dalcin PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 1996f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 1997f4259b30SLisandro Dalcin PetscScalar *values=NULL; 1998bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 19993bd0feecSPierre Jolivet PetscBool nooffprocentries; 2000dfb205c3SBarry Smith 2001dfb205c3SBarry Smith PetscFunctionBegin; 20025f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1,PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs); 20039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap,bs)); 20049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap,bs)); 20059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20079566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2008dfb205c3SBarry Smith m = B->rmap->n/bs; 2009dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2010dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2011dfb205c3SBarry Smith 20125f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]); 20139566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz)); 2014dfb205c3SBarry Smith for (i=0; i<m; i++) { 2015dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 20165f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz); 20170cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2018dfb205c3SBarry Smith JJ = jj + ii[i]; 20190cd7f59aSBarry Smith bd = 0; 2020dfb205c3SBarry Smith for (j=0; j<nz; j++) { 20210cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2022dfb205c3SBarry Smith JJ++; 20230cd7f59aSBarry Smith bd++; 2024dfb205c3SBarry Smith } 2025dfb205c3SBarry Smith d = 0; 2026dfb205c3SBarry Smith for (; j<nz; j++) { 2027dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2028dfb205c3SBarry Smith d++; 2029dfb205c3SBarry Smith } 2030dfb205c3SBarry Smith d_nnz[i] = d; 20310cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20320cd7f59aSBarry Smith nz = nz - bd; 20330cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2034dfb205c3SBarry Smith } 20359566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz)); 20369566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)); 20379566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 2038dfb205c3SBarry Smith 2039dfb205c3SBarry Smith values = (PetscScalar*)V; 2040dfb205c3SBarry Smith if (!values) { 20419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*bs*nz_max,&values)); 2042dfb205c3SBarry Smith } 2043dfb205c3SBarry Smith for (i=0; i<m; i++) { 2044dfb205c3SBarry Smith PetscInt row = i + rstart; 2045dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2046dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2047bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2048dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 20499566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES)); 2050bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2051bb80cfbbSStefano Zampini PetscInt j; 20520cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 20530cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 20549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES)); 20550cd7f59aSBarry Smith } 20560cd7f59aSBarry Smith } 2057dfb205c3SBarry Smith } 2058dfb205c3SBarry Smith 20599566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20603bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20613bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 20639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 20643bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20653bd0feecSPierre Jolivet 20669566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 2067dfb205c3SBarry Smith PetscFunctionReturn(0); 2068dfb205c3SBarry Smith } 2069dfb205c3SBarry Smith 20700bad9183SKris Buschelman /*MC 2071fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2072828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2073828413b8SBarry Smith the matrix is stored. 2074828413b8SBarry Smith 2075828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2076828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20770bad9183SKris Buschelman 20780bad9183SKris Buschelman Options Database Keys: 20790bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20800bad9183SKris Buschelman 2081476417e5SBarry Smith Notes: 2082476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2083476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2084476417e5SBarry Smith 20850bad9183SKris Buschelman Level: beginner 20860bad9183SKris Buschelman 2087db781477SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20880bad9183SKris Buschelman M*/ 20890bad9183SKris Buschelman 20908cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2091b5df2d14SHong Zhang { 2092b5df2d14SHong Zhang Mat_MPISBAIJ *b; 209394ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2094b5df2d14SHong Zhang 2095b5df2d14SHong Zhang PetscFunctionBegin; 20969566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 2097b0a32e0cSBarry Smith B->data = (void*)b; 20989566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 2099b5df2d14SHong Zhang 2100b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2101b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2102b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2103b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 210426fbe8dcSKarl Rupp 21059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 21069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size)); 2107b5df2d14SHong Zhang 2108b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size+2,&b->rangebs)); 2110b5df2d14SHong Zhang 2111b5df2d14SHong Zhang /* build cache for off array entries formed */ 21129566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 211326fbe8dcSKarl Rupp 2114b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21150298fd71SBarry Smith b->colmap = NULL; 21160298fd71SBarry Smith b->garray = NULL; 2117b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2118b5df2d14SHong Zhang 2119b5df2d14SHong Zhang /* stuff used in block assembly */ 2120f4259b30SLisandro Dalcin b->barray = NULL; 2121b5df2d14SHong Zhang 2122b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2123f4259b30SLisandro Dalcin b->lvec = NULL; 2124f4259b30SLisandro Dalcin b->Mvctx = NULL; 2125f4259b30SLisandro Dalcin b->slvec0 = NULL; 2126f4259b30SLisandro Dalcin b->slvec0b = NULL; 2127f4259b30SLisandro Dalcin b->slvec1 = NULL; 2128f4259b30SLisandro Dalcin b->slvec1a = NULL; 2129f4259b30SLisandro Dalcin b->slvec1b = NULL; 2130f4259b30SLisandro Dalcin b->sMvctx = NULL; 2131b5df2d14SHong Zhang 2132b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2133f4259b30SLisandro Dalcin b->rowindices = NULL; 2134f4259b30SLisandro Dalcin b->rowvalues = NULL; 2135b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2136b5df2d14SHong Zhang 2137b5df2d14SHong Zhang /* hash table stuff */ 2138f4259b30SLisandro Dalcin b->ht = NULL; 2139f4259b30SLisandro Dalcin b->hd = NULL; 2140b5df2d14SHong Zhang b->ht_size = 0; 2141b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2142b5df2d14SHong Zhang b->ht_fact = 0; 2143b5df2d14SHong Zhang b->ht_total_ct = 0; 2144b5df2d14SHong Zhang b->ht_insert_ct = 0; 2145b5df2d14SHong Zhang 21467dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21477a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21487a868f3eSHong Zhang 2149f4259b30SLisandro Dalcin b->in_loc = NULL; 2150f4259b30SLisandro Dalcin b->v_loc = NULL; 215159ffdab8SBarry Smith b->n_loc = 0; 215294ae4db5SBarry Smith 21539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ)); 21549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ)); 21559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ)); 21569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21576214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental)); 21596214f412SHong Zhang #endif 2160d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 21619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK)); 2162d24d4204SJose E. Roman #endif 21639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic)); 21649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic)); 2165aa5a9175SDahai Guo 2166b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2167b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2168b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2169b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE ; 2170eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2171b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2172eb1ec7c1SStefano Zampini #else 2173b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2174eb1ec7c1SStefano Zampini #endif 217513647f61SHong Zhang 21769566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ)); 2177d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat"); 21789566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL)); 217994ae4db5SBarry Smith if (flg) { 218094ae4db5SBarry Smith PetscReal fact = 1.39; 21819566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE)); 21829566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL)); 218394ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21849566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B,fact)); 21859566063dSJacob Faibussowitsch PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact)); 218694ae4db5SBarry Smith } 2187d0609cedSBarry Smith PetscOptionsEnd(); 2188b5df2d14SHong Zhang PetscFunctionReturn(0); 2189b5df2d14SHong Zhang } 2190b5df2d14SHong Zhang 2191209238afSKris Buschelman /*MC 2192002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2193209238afSKris Buschelman 2194209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2195209238afSKris Buschelman and MATMPISBAIJ otherwise. 2196209238afSKris Buschelman 2197209238afSKris Buschelman Options Database Keys: 2198209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2199209238afSKris Buschelman 2200209238afSKris Buschelman Level: beginner 2201209238afSKris Buschelman 2202db781477SPatrick Sanan .seealso: `MatCreateSBAIJ`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2203209238afSKris Buschelman M*/ 2204209238afSKris Buschelman 2205b5df2d14SHong Zhang /*@C 2206b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2207b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2208b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2209b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2210b5df2d14SHong Zhang 2211b5df2d14SHong Zhang Collective on Mat 2212b5df2d14SHong Zhang 2213b5df2d14SHong Zhang Input Parameters: 22141c4f3114SJed Brown + B - the matrix 2215bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2216bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2217b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2218b5df2d14SHong Zhang submatrix (same for all local rows) 2219b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22206d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22210298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 222295742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2223b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2224b5df2d14SHong Zhang submatrix (same for all local rows). 2225b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2226c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22270298fd71SBarry Smith (possibly different for each block row) or NULL. 2228b5df2d14SHong Zhang 2229b5df2d14SHong Zhang Options Database Keys: 2230a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2231b5df2d14SHong Zhang block calculations (much slower) 2232a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2233b5df2d14SHong Zhang 2234b5df2d14SHong Zhang Notes: 2235b5df2d14SHong Zhang 2236b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2237b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2238b5df2d14SHong Zhang 223949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 224049a6f317SBarry Smith 2241b5df2d14SHong Zhang Storage Information: 2242b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2243b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2244b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2245b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2246b5df2d14SHong Zhang 2247b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2248b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22490298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2250b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2251b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2252b5df2d14SHong Zhang 2253aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2254aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2255aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2256aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2257aa95bbe8SBarry Smith 2258b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2259b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2260b5df2d14SHong Zhang 2261b5df2d14SHong Zhang .vb 2262b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2263a4b1a0f6SJed Brown -------------------------- 2264c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2265c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2266c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2267a4b1a0f6SJed Brown -------------------------- 2268b5df2d14SHong Zhang .ve 2269b5df2d14SHong Zhang 2270b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2271b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22726d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22736d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2274b5df2d14SHong Zhang 22756d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22766d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2277c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2278c2fc9fa9SBarry Smith 2279b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2280b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2281b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2282b5df2d14SHong Zhang matrices. 2283b5df2d14SHong Zhang 2284b5df2d14SHong Zhang Level: intermediate 2285b5df2d14SHong Zhang 2286db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2287b5df2d14SHong Zhang @*/ 22887087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2289b5df2d14SHong Zhang { 2290b5df2d14SHong Zhang PetscFunctionBegin; 22916ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22926ba663aaSJed Brown PetscValidType(B,1); 22936ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 2294cac4c232SBarry Smith PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz)); 2295b5df2d14SHong Zhang PetscFunctionReturn(0); 2296b5df2d14SHong Zhang } 2297b5df2d14SHong Zhang 2298a30f8f8cSSatish Balay /*@C 229969b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2300a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2301a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2302a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2303a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2304a30f8f8cSSatish Balay 2305d083f849SBarry Smith Collective 2306a30f8f8cSSatish Balay 2307a30f8f8cSSatish Balay Input Parameters: 2308a30f8f8cSSatish Balay + comm - MPI communicator 2309bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2310bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2311a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2312a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2313a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2314a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2315a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2316a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2317a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2318a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2319a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2320a30f8f8cSSatish Balay submatrix (same for all local rows) 2321a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23226d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23230298fd71SBarry Smith (possibly different for each block block row) or NULL. 232495742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 232595742e49SBarry Smith set its value even if it is zero. 2326a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2327a30f8f8cSSatish Balay submatrix (same for all local rows). 2328a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2329a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23300298fd71SBarry Smith each block row) or NULL. 2331a30f8f8cSSatish Balay 2332a30f8f8cSSatish Balay Output Parameter: 2333a30f8f8cSSatish Balay . A - the matrix 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay Options Database Keys: 2336a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2337a30f8f8cSSatish Balay block calculations (much slower) 2338a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2339a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2340a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2341a30f8f8cSSatish Balay 2342175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2343f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2344175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2345175b88e8SBarry Smith 2346a30f8f8cSSatish Balay Notes: 2347d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23486d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2349d1be2dadSMatthew Knepley 2350a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2351a30f8f8cSSatish Balay (possibly both). 2352a30f8f8cSSatish Balay 2353a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2354a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2355a30f8f8cSSatish Balay 235649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 235749a6f317SBarry Smith 2358a30f8f8cSSatish Balay Storage Information: 2359a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2360a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2361a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2362a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2363a30f8f8cSSatish Balay 2364a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2365a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23660298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2367a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2368a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2369a30f8f8cSSatish Balay 2370a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2371a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2372a30f8f8cSSatish Balay 2373a30f8f8cSSatish Balay .vb 2374a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2375a4b1a0f6SJed Brown -------------------------- 2376c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2377c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2378c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2379a4b1a0f6SJed Brown -------------------------- 2380a30f8f8cSSatish Balay .ve 2381a30f8f8cSSatish Balay 2382a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2383a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23846d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23856d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2386a30f8f8cSSatish Balay 23876d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23886d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2389a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2390a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2391a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2392a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2393a30f8f8cSSatish Balay matrices. 2394a30f8f8cSSatish Balay 2395a30f8f8cSSatish Balay Level: intermediate 2396a30f8f8cSSatish Balay 2397db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2398a30f8f8cSSatish Balay @*/ 2399a30f8f8cSSatish Balay 240069b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2401a30f8f8cSSatish Balay { 24021302d50aSBarry Smith PetscMPIInt size; 2403a30f8f8cSSatish Balay 2404a30f8f8cSSatish Balay PetscFunctionBegin; 24059566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 24069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2408273d9f13SBarry Smith if (size > 1) { 24099566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPISBAIJ)); 24109566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz)); 2411273d9f13SBarry Smith } else { 24129566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSBAIJ)); 24139566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz)); 2414273d9f13SBarry Smith } 2415a30f8f8cSSatish Balay PetscFunctionReturn(0); 2416a30f8f8cSSatish Balay } 2417a30f8f8cSSatish Balay 24186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2419a30f8f8cSSatish Balay { 2420a30f8f8cSSatish Balay Mat mat; 2421a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2422d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2423387bc808SHong Zhang PetscScalar *array; 2424a30f8f8cSSatish Balay 2425a30f8f8cSSatish Balay PetscFunctionBegin; 2426f4259b30SLisandro Dalcin *newmat = NULL; 242726fbe8dcSKarl Rupp 24289566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 24299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 24309566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 24319566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 24329566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 2433e1b6402fSHong Zhang 2434d5f3da31SBarry Smith mat->factortype = matin->factortype; 2435273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 243682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24377fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24387fff6886SHong Zhang 2439b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2440a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2441a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2442a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2443a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2444a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2445a30f8f8cSSatish Balay 2446a30f8f8cSSatish Balay a->size = oldmat->size; 2447a30f8f8cSSatish Balay a->rank = oldmat->rank; 2448a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2449a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2450f4259b30SLisandro Dalcin a->rowindices = NULL; 2451f4259b30SLisandro Dalcin a->rowvalues = NULL; 2452a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2453f4259b30SLisandro Dalcin a->barray = NULL; 2454899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2455899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2456899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2457899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2458a30f8f8cSSatish Balay 2459a30f8f8cSSatish Balay /* hash table stuff */ 2460f4259b30SLisandro Dalcin a->ht = NULL; 2461f4259b30SLisandro Dalcin a->hd = NULL; 2462a30f8f8cSSatish Balay a->ht_size = 0; 2463a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2464a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2465a30f8f8cSSatish Balay a->ht_total_ct = 0; 2466a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2467a30f8f8cSSatish Balay 24689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2)); 2469a30f8f8cSSatish Balay if (oldmat->colmap) { 2470a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 24719566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 2472a30f8f8cSSatish Balay #else 24739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs,&a->colmap)); 24749566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt))); 24759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs)); 2476a30f8f8cSSatish Balay #endif 2477f4259b30SLisandro Dalcin } else a->colmap = NULL; 2478387bc808SHong Zhang 2479a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 24809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len,&a->garray)); 24819566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 24829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 2483f4259b30SLisandro Dalcin } else a->garray = NULL; 2484a30f8f8cSSatish Balay 24859566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash)); 24869566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 24879566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 24889566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 24899566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 249082327fa8SHong Zhang 24919566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0,&a->slvec0)); 24929566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0)); 24939566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1,&a->slvec1)); 24949566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1)); 2495387bc808SHong Zhang 24969566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1,&nt)); 24979566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1,&array)); 24989566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a)); 24999566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b)); 25009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1,&array)); 25019566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0,&array)); 25029566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b)); 25039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0,&array)); 25049566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0)); 25059566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1)); 25069566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b)); 25079566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a)); 25089566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b)); 2509387bc808SHong Zhang 2510387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25119566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2512387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25139566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx)); 251482327fa8SHong Zhang 25159566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 25169566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 25179566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 25189566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 25199566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 2520a30f8f8cSSatish Balay *newmat = mat; 2521a30f8f8cSSatish Balay PetscFunctionReturn(0); 2522a30f8f8cSSatish Balay } 2523a30f8f8cSSatish Balay 2524618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2525618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2526618cc2edSLisandro Dalcin 2527618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer) 252895936485SShri Abhyankar { 25297f489da9SVaclav Hapla PetscBool isbinary; 253095936485SShri Abhyankar 253195936485SShri Abhyankar PetscFunctionBegin; 25329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 25335f80ce2aSJacob Faibussowitsch PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 25349566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat,viewer)); 253595936485SShri Abhyankar PetscFunctionReturn(0); 253695936485SShri Abhyankar } 253795936485SShri Abhyankar 2538dcf5cc72SBarry Smith /*XXXXX@ 2539a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2540a30f8f8cSSatish Balay 2541a30f8f8cSSatish Balay Input Parameters: 2542a30f8f8cSSatish Balay . mat - the matrix 2543a30f8f8cSSatish Balay . fact - factor 2544a30f8f8cSSatish Balay 2545c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2546a30f8f8cSSatish Balay 2547a30f8f8cSSatish Balay Level: advanced 2548a30f8f8cSSatish Balay 2549a30f8f8cSSatish Balay Notes: 2550a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2551a30f8f8cSSatish Balay 2552db781477SPatrick Sanan .seealso: `MatSetOption()` 2553dcf5cc72SBarry Smith @XXXXX*/ 2554dcf5cc72SBarry Smith 2555985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 255624d5174aSHong Zhang { 255724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2558f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2559ca54ac64SHong Zhang PetscReal atmp; 256087828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 25611302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25621302d50aSBarry Smith PetscMPIInt rank,size; 25631302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 256487828ca2SBarry Smith PetscScalar *va; 25658a1c53f2SBarry Smith MatScalar *ba; 2566f4c0e9e4SHong Zhang MPI_Status stat; 256724d5174aSHong Zhang 256824d5174aSHong Zhang PetscFunctionBegin; 25695f80ce2aSJacob Faibussowitsch PetscCheck(!idx,PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 25709566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A,v,NULL)); 25719566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&va)); 2572f4c0e9e4SHong Zhang 25739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 25749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank)); 2575f4c0e9e4SHong Zhang 2576d0f46423SBarry Smith bs = A->rmap->bs; 2577f4c0e9e4SHong Zhang mbs = a->mbs; 2578f4c0e9e4SHong Zhang Mbs = a->Mbs; 2579f4c0e9e4SHong Zhang ba = b->a; 2580f4c0e9e4SHong Zhang bi = b->i; 2581f4c0e9e4SHong Zhang bj = b->j; 2582f4c0e9e4SHong Zhang 2583f4c0e9e4SHong Zhang /* find ownerships */ 2584d0f46423SBarry Smith rowners_bs = A->rmap->range; 2585f4c0e9e4SHong Zhang 2586f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25879566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*Mbs,&work)); 2588f4c0e9e4SHong Zhang 2589f4c0e9e4SHong Zhang /* row_max for B */ 2590b8475685SHong Zhang if (rank != size-1) { 2591f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2592f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2593f4c0e9e4SHong Zhang brow = bs*i; 2594f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2595f4c0e9e4SHong Zhang bcol = bs*(*bj); 2596f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2597ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 259804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2599f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2600f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2601ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2602ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2603f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2604f4c0e9e4SHong Zhang } 2605f4c0e9e4SHong Zhang } 2606f4c0e9e4SHong Zhang bj++; 2607f4c0e9e4SHong Zhang } 2608f4c0e9e4SHong Zhang } 2609f4c0e9e4SHong Zhang 2610f4c0e9e4SHong Zhang /* send values to its owners */ 2611f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2612f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2613ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 26149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A))); 2615ca54ac64SHong Zhang } 2616f4c0e9e4SHong Zhang } 2617f4c0e9e4SHong Zhang 2618f4c0e9e4SHong Zhang /* receive values */ 2619ca54ac64SHong Zhang if (rank) { 2620f4c0e9e4SHong Zhang rvalues = work; 2621ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2622f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 26239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat)); 2624f4c0e9e4SHong Zhang /* process values */ 2625f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2626ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2627f4c0e9e4SHong Zhang } 2628f4c0e9e4SHong Zhang } 2629ca54ac64SHong Zhang } 2630f4c0e9e4SHong Zhang 26319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&va)); 26329566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 263324d5174aSHong Zhang PetscFunctionReturn(0); 263424d5174aSHong Zhang } 26352798e883SHong Zhang 263641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26372798e883SHong Zhang { 26382798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2639d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26403649974fSBarry Smith PetscScalar *x,*ptr,*from; 2641ffe4fb16SHong Zhang Vec bb1; 26423649974fSBarry Smith const PetscScalar *b; 2643ffe4fb16SHong Zhang 2644ffe4fb16SHong Zhang PetscFunctionBegin; 26455f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits); 26465f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2647ffe4fb16SHong Zhang 2648a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2650a2b30743SBarry Smith PetscFunctionReturn(0); 2651a2b30743SBarry Smith } 2652a2b30743SBarry Smith 2653ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2654ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26559566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx)); 2656ffe4fb16SHong Zhang its--; 2657ffe4fb16SHong Zhang } 2658ffe4fb16SHong Zhang 26599566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 2660ffe4fb16SHong Zhang while (its--) { 2661ffe4fb16SHong Zhang 2662ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26639566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b)); 2664ffe4fb16SHong Zhang 2665ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26669566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0,&ptr)); 26679566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 26689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr,x,bs*mbs)); 26699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0,&ptr)); 2670ffe4fb16SHong Zhang 26719566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0,-1.0)); 2672ffe4fb16SHong Zhang 2673ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26749566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1,&ptr)); 26759566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb,&b)); 26769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr,b,bs*mbs)); 26779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1,&ptr)); 2678ffe4fb16SHong Zhang 2679ffe4fb16SHong Zhang /* set slvec1b = 0 */ 26809566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b,0.0)); 2681ffe4fb16SHong Zhang 26829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 26839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 26849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb,&b)); 26859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 2686ffe4fb16SHong Zhang 2687ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26889566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1)); 2689ffe4fb16SHong Zhang 2690ffe4fb16SHong Zhang /* local diagonal sweep */ 26919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx)); 2692ffe4fb16SHong Zhang } 26939566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2694fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26959566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2696fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26979566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2698fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2699fa22f6d0SBarry Smith Vec xx1; 2700ace3abfcSBarry Smith PetscBool hasop; 270120f1ed55SBarry Smith const PetscScalar *diag; 2702887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 270320f1ed55SBarry Smith PetscInt i,n; 2704fa22f6d0SBarry Smith 2705fa22f6d0SBarry Smith if (!mat->xx1) { 27069566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&mat->xx1)); 27079566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&mat->bb1)); 2708fa22f6d0SBarry Smith } 2709fa22f6d0SBarry Smith xx1 = mat->xx1; 2710fa22f6d0SBarry Smith bb1 = mat->bb1; 2711fa22f6d0SBarry Smith 27129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx)); 2713fa22f6d0SBarry Smith 2714fa22f6d0SBarry Smith if (!mat->diag) { 2715effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27169566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin,&mat->diag,NULL)); 27179566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin,mat->diag)); 2718fa22f6d0SBarry Smith } 27199566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop)); 2720fa22f6d0SBarry Smith 2721fa22f6d0SBarry Smith if (hasop) { 27229566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin,xx,bb1)); 27239566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 272420f1ed55SBarry Smith } else { 272520f1ed55SBarry Smith /* 272620f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27279566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27289566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 272920f1ed55SBarry Smith */ 27309566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a,&sl)); 27319566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag,&diag)); 27329566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb,&b)); 27339566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 27349566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&n)); 2735887ee2caSBarry Smith if (omega == 1.0) { 273626fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 27379566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*n)); 2738887ee2caSBarry Smith } else { 273926fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 27409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0*n)); 2741887ee2caSBarry Smith } 27429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a,&sl)); 27439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag,&diag)); 27449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb,&b)); 27459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 274620f1ed55SBarry Smith } 2747fa22f6d0SBarry Smith 2748fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 27499566063dSJacob Faibussowitsch PetscCall(VecSet(mat->slvec1b,0.0)); 27509566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b)); 27519566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0,&from)); 27529566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 27539566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from,x,bs*mbs)); 27549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0,&from)); 27559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 27569566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 27579566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD)); 27589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a)); 2759fa22f6d0SBarry Smith 2760fa22f6d0SBarry Smith /* local sweep */ 27619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1)); 27629566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx,1.0,xx1)); 2763f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2764ffe4fb16SHong Zhang PetscFunctionReturn(0); 2765ffe4fb16SHong Zhang } 2766ffe4fb16SHong Zhang 2767dfb205c3SBarry Smith /*@ 2768dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2769dfb205c3SBarry Smith CSR format the local rows. 2770dfb205c3SBarry Smith 2771d083f849SBarry Smith Collective 2772dfb205c3SBarry Smith 2773dfb205c3SBarry Smith Input Parameters: 2774dfb205c3SBarry Smith + comm - MPI communicator 2775dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2776dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2777dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2778dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2779dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2780dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2781dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2782483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2783dfb205c3SBarry Smith . j - column indices 2784dfb205c3SBarry Smith - a - matrix values 2785dfb205c3SBarry Smith 2786dfb205c3SBarry Smith Output Parameter: 2787dfb205c3SBarry Smith . mat - the matrix 2788dfb205c3SBarry Smith 2789dfb205c3SBarry Smith Level: intermediate 2790dfb205c3SBarry Smith 2791dfb205c3SBarry Smith Notes: 2792dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2793dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2794dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2797dfb205c3SBarry Smith 2798db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2799db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 2800dfb205c3SBarry Smith @*/ 28017087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2802dfb205c3SBarry Smith { 2803dfb205c3SBarry Smith PetscFunctionBegin; 28045f80ce2aSJacob Faibussowitsch PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 28055f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 28069566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,mat)); 28079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat,m,n,M,N)); 28089566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat,MATMPISBAIJ)); 28099566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a)); 2810dfb205c3SBarry Smith PetscFunctionReturn(0); 2811dfb205c3SBarry Smith } 2812dfb205c3SBarry Smith 2813dfb205c3SBarry Smith /*@C 2814664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2815dfb205c3SBarry Smith 2816d083f849SBarry Smith Collective 2817dfb205c3SBarry Smith 2818dfb205c3SBarry Smith Input Parameters: 28191c4f3114SJed Brown + B - the matrix 2820dfb205c3SBarry Smith . bs - the block size 2821dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2822dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2823dfb205c3SBarry Smith - v - optional values in the matrix 2824dfb205c3SBarry Smith 2825664954b6SBarry Smith Level: advanced 2826664954b6SBarry Smith 2827664954b6SBarry Smith Notes: 28280cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28290cd7f59aSBarry Smith and usually the numerical values as well 28300cd7f59aSBarry Smith 283150c5228eSBarry Smith Any entries below the diagonal are ignored 2832dfb205c3SBarry Smith 2833db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ` 2834dfb205c3SBarry Smith @*/ 28357087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2836dfb205c3SBarry Smith { 2837dfb205c3SBarry Smith PetscFunctionBegin; 2838cac4c232SBarry Smith PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v)); 2839dfb205c3SBarry Smith PetscFunctionReturn(0); 2840dfb205c3SBarry Smith } 2841dfb205c3SBarry Smith 284210c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28434dcd73b1SHong Zhang { 284410c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 284510c56fdeSHong Zhang PetscInt *indx; 284610c56fdeSHong Zhang PetscScalar *values; 2847dfb205c3SBarry Smith 28484dcd73b1SHong Zhang PetscFunctionBegin; 28499566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 285010c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 285110c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 2852de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 285310c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 2854de25e9cbSPierre Jolivet PetscMPIInt rank,size; 28554dcd73b1SHong Zhang 28569566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 285710c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 285810c56fdeSHong Zhang if (n == PETSC_DECIDE) { 28599566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N)); 286010c56fdeSHong Zhang } 2861da91a574SPierre Jolivet nbs = n/cbs; 28624dcd73b1SHong Zhang 28639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax,&bindx)); 2864d0609cedSBarry Smith MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */ 2865de25e9cbSPierre Jolivet 28669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 28679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&size)); 2868de25e9cbSPierre Jolivet if (rank == size-1) { 2869de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28705f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs); 2871de25e9cbSPierre Jolivet } 2872de25e9cbSPierre Jolivet 2873d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28749566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)); 287510c56fdeSHong Zhang for (i=0; i<mbs; i++) { 28769566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */ 28774dcd73b1SHong Zhang nnz = nnz/bs; 28784dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 28799566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz)); 28809566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL)); 28814dcd73b1SHong Zhang } 28829566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE)); 28839566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28844dcd73b1SHong Zhang 28859566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,outmat)); 28869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE)); 28879566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat,bs,cbs)); 28889566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat,MATSBAIJ)); 28899566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz)); 28909566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz)); 2891d0609cedSBarry Smith MatPreallocateEnd(dnz,onz); 28924dcd73b1SHong Zhang } 28934dcd73b1SHong Zhang 289410c56fdeSHong Zhang /* numeric phase */ 28959566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 28969566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL)); 28974dcd73b1SHong Zhang 28989566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)); 28994dcd73b1SHong Zhang for (i=0; i<m; i++) { 29009566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values)); 29014dcd73b1SHong Zhang Ii = i + rstart; 29029566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES)); 29039566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values)); 29044dcd73b1SHong Zhang } 29059566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE)); 29069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY)); 29079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY)); 29084dcd73b1SHong Zhang PetscFunctionReturn(0); 29094dcd73b1SHong Zhang } 2910