xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 6214f4126138aa4cc9867da86c269cb48c3e22ce)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
23*6214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
24*6214f412SHong Zhang #endif
25a30f8f8cSSatish Balay 
264a2ae208SSatish Balay #undef __FUNCT__
274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
287087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
29a30f8f8cSSatish Balay {
30f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
31dfbe8321SBarry Smith   PetscErrorCode ierr;
32a30f8f8cSSatish Balay 
33a30f8f8cSSatish Balay   PetscFunctionBegin;
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
36a30f8f8cSSatish Balay   PetscFunctionReturn(0);
37a30f8f8cSSatish Balay }
38a30f8f8cSSatish Balay 
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
53a30f8f8cSSatish Balay   { \
54a30f8f8cSSatish Balay  \
55a30f8f8cSSatish Balay     brow = row/bs;  \
56a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
57a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
58a30f8f8cSSatish Balay     bcol = col/bs; \
59a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
60a30f8f8cSSatish Balay     low  = 0; high = nrow; \
61a30f8f8cSSatish Balay     while (high-low > 3) { \
62a30f8f8cSSatish Balay       t = (low+high)/2; \
63a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
64a30f8f8cSSatish Balay       else              low  = t; \
65a30f8f8cSSatish Balay     } \
66a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
67a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
68a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
69a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
70a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
71a30f8f8cSSatish Balay         else                    *bap  = value;  \
72a30f8f8cSSatish Balay         goto a_noinsert; \
73a30f8f8cSSatish Balay       } \
74a30f8f8cSSatish Balay     } \
75a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
76e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
77fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
78a30f8f8cSSatish Balay     N = nrow++ - 1;  \
79a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
80a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
81a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
82a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
83a30f8f8cSSatish Balay     } \
84a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
85a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
86a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
87e56f5c9eSBarry Smith     A->nonzerostate++;\
88a30f8f8cSSatish Balay a_noinsert:; \
89a30f8f8cSSatish Balay     ailen[brow] = nrow; \
90a30f8f8cSSatish Balay   }
91e5e170daSBarry Smith 
92a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
93a30f8f8cSSatish Balay   { \
94a30f8f8cSSatish Balay     brow = row/bs;  \
95a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
96a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
97a30f8f8cSSatish Balay     bcol = col/bs; \
98a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
99a30f8f8cSSatish Balay     low  = 0; high = nrow; \
100a30f8f8cSSatish Balay     while (high-low > 3) { \
101a30f8f8cSSatish Balay       t = (low+high)/2; \
102a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
103a30f8f8cSSatish Balay       else              low  = t; \
104a30f8f8cSSatish Balay     } \
105a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
106a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
107a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
108a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
109a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
110a30f8f8cSSatish Balay         else                    *bap  = value;  \
111a30f8f8cSSatish Balay         goto b_noinsert; \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay     } \
114a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
115e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
116fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
117a30f8f8cSSatish Balay     N = nrow++ - 1;  \
118a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
119a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
120a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
121a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
122a30f8f8cSSatish Balay     } \
123a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
124a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
125a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
126e56f5c9eSBarry Smith     B->nonzerostate++;\
127a30f8f8cSSatish Balay b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay   }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat          A     = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat         B     = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
1630298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1640298fd71SBarry Smith   MatScalar *v_loc = NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (!baij->donotstash) {
16859ffdab8SBarry Smith     if (n > baij->n_loc) {
16959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
171785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
172785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
17326fbe8dcSKarl Rupp 
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18901b2bd88SHong Zhang           if (a->ignore_ltriangular) {
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19126fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19201b2bd88SHong Zhang         }
193a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
194a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
195a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
196a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
197db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
198db4deed7SKarl Rupp           else             value = v[i+j*m];
199a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
200a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
201a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
203cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
204a30f8f8cSSatish Balay #endif
205a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
206a30f8f8cSSatish Balay           if (mat->was_assembled) {
207a30f8f8cSSatish Balay             if (!baij->colmap) {
208ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
209a30f8f8cSSatish Balay             }
210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
211a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21271730473SSatish Balay             col  = col - 1;
213a30f8f8cSSatish Balay #else
21471730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
215a30f8f8cSSatish Balay #endif
216a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
217ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
218a30f8f8cSSatish Balay               col  =  in[j];
219a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
220a30f8f8cSSatish Balay               B    = baij->B;
221a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
222a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
223a30f8f8cSSatish Balay               ba   = b->a;
22471730473SSatish Balay             } else col += in[j]%bs;
225a30f8f8cSSatish Balay           } else col = in[j];
226db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
227db4deed7SKarl Rupp           else             value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
2355080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
236a30f8f8cSSatish Balay         n_loc          = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
261ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if (!barray) {
269785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++ = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
31226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3330880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
339ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col  = in[j];
3410880e062SHong Zhang             }
34226fbe8dcSKarl Rupp           } else col = in[j];
343e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3440880e062SHong Zhang         }
3450880e062SHong Zhang       }
3460880e062SHong Zhang     } else {
3474cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3480880e062SHong Zhang       if (!baij->donotstash) {
3490880e062SHong Zhang         if (roworiented) {
3500880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3510880e062SHong Zhang         } else {
3520880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         }
3540880e062SHong Zhang       }
3550880e062SHong Zhang     }
3560880e062SHong Zhang   }
3570880e062SHong Zhang   PetscFunctionReturn(0);
358a30f8f8cSSatish Balay }
359a30f8f8cSSatish Balay 
3604a2ae208SSatish Balay #undef __FUNCT__
3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
363a30f8f8cSSatish Balay {
364f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3656849ba73SBarry Smith   PetscErrorCode ierr;
366d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
367d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
368a30f8f8cSSatish Balay 
369a30f8f8cSSatish Balay   PetscFunctionBegin;
370a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
371e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
372e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
373a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
374a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
375a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
376e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
377e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
378a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
379a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
380c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
381a30f8f8cSSatish Balay         } else {
382a30f8f8cSSatish Balay           if (!baij->colmap) {
383ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           }
385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
387a30f8f8cSSatish Balay           data--;
388a30f8f8cSSatish Balay #else
389a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
392a30f8f8cSSatish Balay           else {
393a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
394e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
395a30f8f8cSSatish Balay           }
396a30f8f8cSSatish Balay         }
397a30f8f8cSSatish Balay       }
398f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
399a30f8f8cSSatish Balay   }
400a30f8f8cSSatish Balay   PetscFunctionReturn(0);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
4034a2ae208SSatish Balay #undef __FUNCT__
4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
406a30f8f8cSSatish Balay {
407a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
408dfbe8321SBarry Smith   PetscErrorCode ierr;
409a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
410a30f8f8cSSatish Balay 
411a30f8f8cSSatish Balay   PetscFunctionBegin;
412a30f8f8cSSatish Balay   if (baij->size == 1) {
413a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
414a30f8f8cSSatish Balay   } else {
415a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
416785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
419a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
421ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4228f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
423a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4240b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4250b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4260b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4270b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
428899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
429d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4300b8dc8d2SHong Zhang       MatScalar    *v;
4310b8dc8d2SHong Zhang 
432dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
433d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4430b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4600b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
47274ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
473f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
474a30f8f8cSSatish Balay   }
475a30f8f8cSSatish Balay   PetscFunctionReturn(0);
476a30f8f8cSSatish Balay }
477a30f8f8cSSatish Balay 
4784a2ae208SSatish Balay #undef __FUNCT__
4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
481a30f8f8cSSatish Balay {
482a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
483dfbe8321SBarry Smith   PetscErrorCode ierr;
4841302d50aSBarry Smith   PetscInt       nstash,reallocs;
485a30f8f8cSSatish Balay   InsertMode     addv;
486a30f8f8cSSatish Balay 
487a30f8f8cSSatish Balay   PetscFunctionBegin;
48826fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
489a30f8f8cSSatish Balay 
490a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
491ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
492ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
493a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
494a30f8f8cSSatish Balay 
495d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4961e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
497a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4981e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
499a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5001e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
501a30f8f8cSSatish Balay   PetscFunctionReturn(0);
502a30f8f8cSSatish Balay }
503a30f8f8cSSatish Balay 
5044a2ae208SSatish Balay #undef __FUNCT__
5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
507a30f8f8cSSatish Balay {
508a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
509a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
5106849ba73SBarry Smith   PetscErrorCode ierr;
51113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
512e44c0bd4SBarry Smith   PetscInt       *row,*col;
513ace3abfcSBarry Smith   PetscBool      other_disassembled;
51413f74950SBarry Smith   PetscMPIInt    n;
515ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
516a30f8f8cSSatish Balay   MatScalar      *val;
517a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
518a30f8f8cSSatish Balay 
51991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
520a30f8f8cSSatish Balay   PetscFunctionBegin;
5214cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
522a30f8f8cSSatish Balay     while (1) {
523a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
524a30f8f8cSSatish Balay       if (!flg) break;
525a30f8f8cSSatish Balay 
526a30f8f8cSSatish Balay       for (i=0; i<n;) {
527a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
52826fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
52926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
53026fbe8dcSKarl Rupp         }
531a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
532a30f8f8cSSatish Balay         else       ncols = n-i;
533a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
534dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
535a30f8f8cSSatish Balay         i    = j;
536a30f8f8cSSatish Balay       }
537a30f8f8cSSatish Balay     }
538a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
539a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
540a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
541a30f8f8cSSatish Balay        restore the original flags */
542a30f8f8cSSatish Balay     r1 = baij->roworiented;
543a30f8f8cSSatish Balay     r2 = a->roworiented;
54491c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
54526fbe8dcSKarl Rupp 
546a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
547a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
54826fbe8dcSKarl Rupp 
54991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
550a30f8f8cSSatish Balay     while (1) {
551a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
552a30f8f8cSSatish Balay       if (!flg) break;
553a30f8f8cSSatish Balay 
554a30f8f8cSSatish Balay       for (i=0; i<n;) {
555a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
55626fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
55726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
55826fbe8dcSKarl Rupp         }
559a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
560a30f8f8cSSatish Balay         else       ncols = n-i;
561dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
562a30f8f8cSSatish Balay         i    = j;
563a30f8f8cSSatish Balay       }
564a30f8f8cSSatish Balay     }
565a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
56626fbe8dcSKarl Rupp 
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56926fbe8dcSKarl Rupp 
57091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
577a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
578a30f8f8cSSatish Balay   /*
579a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
580a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
581a30f8f8cSSatish Balay   */
582a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
583ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
584a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
585ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
591a30f8f8cSSatish Balay   }
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
59574ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
59626fbe8dcSKarl Rupp 
597a30f8f8cSSatish Balay   baij->rowvalues = 0;
5984f9cfa9eSBarry Smith 
5994f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
6004f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
601e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
60209e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
603e56f5c9eSBarry Smith   }
604a30f8f8cSSatish Balay   PetscFunctionReturn(0);
605a30f8f8cSSatish Balay }
606a30f8f8cSSatish Balay 
6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6099804daf3SBarry Smith #include <petscdraw.h>
6104a2ae208SSatish Balay #undef __FUNCT__
6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
613a30f8f8cSSatish Balay {
614a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
615dfbe8321SBarry Smith   PetscErrorCode    ierr;
616d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6177da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
618ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
619b0a32e0cSBarry Smith   PetscViewer       sviewer;
620f3ef73ceSBarry Smith   PetscViewerFormat format;
621a30f8f8cSSatish Balay 
622a30f8f8cSSatish Balay   PetscFunctionBegin;
623251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
624251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62532077d6dSBarry Smith   if (iascii) {
626b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
627456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
628a30f8f8cSSatish Balay       MatInfo info;
629ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6317b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6327b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
634e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
636e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
637b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6387b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
640a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
641a30f8f8cSSatish Balay       PetscFunctionReturn(0);
642fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
64377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
644a30f8f8cSSatish Balay       PetscFunctionReturn(0);
645c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
646c1490034SHong Zhang       PetscFunctionReturn(0);
647a30f8f8cSSatish Balay     }
648a30f8f8cSSatish Balay   }
649a30f8f8cSSatish Balay 
650a30f8f8cSSatish Balay   if (isdraw) {
651b0a32e0cSBarry Smith     PetscDraw draw;
652ace3abfcSBarry Smith     PetscBool isnull;
653b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
654b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
655a30f8f8cSSatish Balay   }
656a30f8f8cSSatish Balay 
6577da1fb6eSBarry Smith   {
658a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
659a30f8f8cSSatish Balay     Mat          A;
66065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
66165d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
662d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
663a30f8f8cSSatish Balay     MatScalar    *a;
664a30f8f8cSSatish Balay 
665f204ca49SKris Buschelman     /* Should this be the same type as mat? */
666ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     if (!rank) {
668f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
669a30f8f8cSSatish Balay     } else {
670f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
671a30f8f8cSSatish Balay     }
672f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6730298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6742b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6753bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
676a30f8f8cSSatish Balay 
677a30f8f8cSSatish Balay     /* copy over the A part */
67865d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
679a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
680785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
681a30f8f8cSSatish Balay 
682a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
683e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
685a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
686e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
687a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
688dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
68926fbe8dcSKarl Rupp           col++;
69026fbe8dcSKarl Rupp           a += bs;
691a30f8f8cSSatish Balay         }
692a30f8f8cSSatish Balay       }
693a30f8f8cSSatish Balay     }
694a30f8f8cSSatish Balay     /* copy over the B part */
69565d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69665d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
697a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
698e9f7bc9eSHong Zhang 
699e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
70026fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
701a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
702a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
703a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
704799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
70526fbe8dcSKarl Rupp           col++;
70626fbe8dcSKarl Rupp           a += bs;
707a30f8f8cSSatish Balay         }
708a30f8f8cSSatish Balay       }
709a30f8f8cSSatish Balay     }
710a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
711a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
712a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     /*
714a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
715b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
716a30f8f8cSSatish Balay     */
717b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71865d70643SHong Zhang     if (!rank) {
7197da1fb6eSBarry Smith         ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     }
721b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7226bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
723a30f8f8cSSatish Balay   }
724a30f8f8cSSatish Balay   PetscFunctionReturn(0);
725a30f8f8cSSatish Balay }
726a30f8f8cSSatish Balay 
7274a2ae208SSatish Balay #undef __FUNCT__
7284a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
729dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
730a30f8f8cSSatish Balay {
731dfbe8321SBarry Smith   PetscErrorCode ierr;
732ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay   PetscFunctionBegin;
735251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
736251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
737251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73932077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
740a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
741a30f8f8cSSatish Balay   }
742a30f8f8cSSatish Balay   PetscFunctionReturn(0);
743a30f8f8cSSatish Balay }
744a30f8f8cSSatish Balay 
7454a2ae208SSatish Balay #undef __FUNCT__
7464a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
747dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
748a30f8f8cSSatish Balay {
749a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
750dfbe8321SBarry Smith   PetscErrorCode ierr;
751a30f8f8cSSatish Balay 
752a30f8f8cSSatish Balay   PetscFunctionBegin;
753a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
754d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
755a30f8f8cSSatish Balay #endif
756a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7586bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7596bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
760a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7616bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #else
76305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
764a30f8f8cSSatish Balay #endif
76505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7745755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77605b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7776bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7786bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7796bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
780ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78105b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
782a30f8f8cSSatish Balay #endif
78359ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78459ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
785899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
786bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
787901853e0SKris Buschelman 
788dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
789bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
790bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
791bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
792bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
793bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
794*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
795*6214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
796*6214f412SHong Zhang #endif
797a30f8f8cSSatish Balay   PetscFunctionReturn(0);
798a30f8f8cSSatish Balay }
799a30f8f8cSSatish Balay 
8004a2ae208SSatish Balay #undef __FUNCT__
801547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
802547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
803547795f9SHong Zhang {
804547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
805547795f9SHong Zhang   PetscErrorCode ierr;
806547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
807547795f9SHong Zhang   PetscScalar    *x,*from;
808547795f9SHong Zhang 
809547795f9SHong Zhang   PetscFunctionBegin;
810547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
811e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
812547795f9SHong Zhang 
813547795f9SHong Zhang   /* diagonal part */
814547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
815547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* subdiagonal part */
818547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   /* copy x into the vec slvec0 */
821547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
823547795f9SHong Zhang 
824547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
827547795f9SHong Zhang 
828547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
829547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
830547795f9SHong Zhang   /* supperdiagonal part */
831547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
832547795f9SHong Zhang   PetscFunctionReturn(0);
833547795f9SHong Zhang }
834547795f9SHong Zhang 
835547795f9SHong Zhang #undef __FUNCT__
836a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
837dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
838a9d4b620SHong Zhang {
839a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
840dfbe8321SBarry Smith   PetscErrorCode ierr;
841d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
842fa22f6d0SBarry Smith   PetscScalar    *x,*from;
843a9d4b620SHong Zhang 
844a9d4b620SHong Zhang   PetscFunctionBegin;
845a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
846e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
847a9d4b620SHong Zhang 
848a9d4b620SHong Zhang   /* diagonal part */
849a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
850fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
851a9d4b620SHong Zhang 
852a9d4b620SHong Zhang   /* subdiagonal part */
853a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
854fc165ae2SBarry Smith 
855a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8561ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8571ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
858a9d4b620SHong Zhang 
859fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
860fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8611ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
862fc165ae2SBarry Smith 
863fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
864ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
865a9d4b620SHong Zhang   /* supperdiagonal part */
866a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
867a9d4b620SHong Zhang   PetscFunctionReturn(0);
868a9d4b620SHong Zhang }
869a9d4b620SHong Zhang 
870a9d4b620SHong Zhang #undef __FUNCT__
87140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
872dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
873a30f8f8cSSatish Balay {
874a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
875dfbe8321SBarry Smith   PetscErrorCode ierr;
8761302d50aSBarry Smith   PetscInt       nt;
877a30f8f8cSSatish Balay 
878a30f8f8cSSatish Balay   PetscFunctionBegin;
879a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
880e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
881e7e72b3dSBarry Smith 
882a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
883e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88465d70643SHong Zhang 
885ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
886b941877fSHong Zhang   /* do diagonal part */
887b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
888b941877fSHong Zhang   /* do supperdiagonal part */
889ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
890b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
891b941877fSHong Zhang   /* do subdiagonal part */
892b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
893ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
894ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
895a30f8f8cSSatish Balay   PetscFunctionReturn(0);
896a30f8f8cSSatish Balay }
897a30f8f8cSSatish Balay 
8984a2ae208SSatish Balay #undef __FUNCT__
8994a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
901a30f8f8cSSatish Balay {
902de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
903dfbe8321SBarry Smith   PetscErrorCode ierr;
904d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
905a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
906a9d4b620SHong Zhang 
907a9d4b620SHong Zhang   PetscFunctionBegin;
908a9d4b620SHong Zhang   /*
909ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
9100ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
911a9d4b620SHong Zhang   */
912a9d4b620SHong Zhang   /* diagonal part */
913a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9142dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
915a9d4b620SHong Zhang 
916a9d4b620SHong Zhang   /* subdiagonal part */
917a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
918a9d4b620SHong Zhang 
919a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9201ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
922a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9231ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
924a9d4b620SHong Zhang 
925ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9261ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
927ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
928a9d4b620SHong Zhang 
929a9d4b620SHong Zhang   /* supperdiagonal part */
930a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
931a9d4b620SHong Zhang   PetscFunctionReturn(0);
932a9d4b620SHong Zhang }
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang #undef __FUNCT__
935a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
937a9d4b620SHong Zhang {
938a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
939dfbe8321SBarry Smith   PetscErrorCode ierr;
940a30f8f8cSSatish Balay 
941a30f8f8cSSatish Balay   PetscFunctionBegin;
942ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
943b941877fSHong Zhang   /* do diagonal part */
944b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
945b941877fSHong Zhang   /* do supperdiagonal part */
946ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
947de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
948de8b6608SHong Zhang 
949b941877fSHong Zhang   /* do subdiagonal part */
950a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
951ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
952ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
953a30f8f8cSSatish Balay   PetscFunctionReturn(0);
954a30f8f8cSSatish Balay }
955a30f8f8cSSatish Balay 
956a30f8f8cSSatish Balay /*
957a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
958a30f8f8cSSatish Balay    diagonal block
959a30f8f8cSSatish Balay */
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
963a30f8f8cSSatish Balay {
964a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
965dfbe8321SBarry Smith   PetscErrorCode ierr;
966a30f8f8cSSatish Balay 
967a30f8f8cSSatish Balay   PetscFunctionBegin;
968e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
969a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
970a30f8f8cSSatish Balay   PetscFunctionReturn(0);
971a30f8f8cSSatish Balay }
972a30f8f8cSSatish Balay 
9734a2ae208SSatish Balay #undef __FUNCT__
9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
976a30f8f8cSSatish Balay {
977a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
978dfbe8321SBarry Smith   PetscErrorCode ierr;
979a30f8f8cSSatish Balay 
980a30f8f8cSSatish Balay   PetscFunctionBegin;
981f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
982f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
983a30f8f8cSSatish Balay   PetscFunctionReturn(0);
984a30f8f8cSSatish Balay }
985a30f8f8cSSatish Balay 
9864a2ae208SSatish Balay #undef __FUNCT__
9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
989a30f8f8cSSatish Balay {
990d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
991d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
992d0d4cfc2SHong Zhang   PetscErrorCode ierr;
993d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
994d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
995899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
996d0d4cfc2SHong Zhang 
997a30f8f8cSSatish Balay   PetscFunctionBegin;
998e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
999d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1000d0d4cfc2SHong Zhang 
1001d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1002d0d4cfc2SHong Zhang     /*
1003d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1004d0d4cfc2SHong Zhang     */
1005d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1006d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1007d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1008d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1009d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
101026fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1011d0d4cfc2SHong Zhang     }
1012dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1013d0d4cfc2SHong Zhang   }
1014d0d4cfc2SHong Zhang 
1015e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1016d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1017d0d4cfc2SHong Zhang 
1018d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1019d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1020d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1021d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1023d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1024d0d4cfc2SHong Zhang 
1025d0d4cfc2SHong Zhang   cmap = mat->garray;
1026d0d4cfc2SHong Zhang   if (v  || idx) {
1027d0d4cfc2SHong Zhang     if (nztot) {
1028d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1029d0d4cfc2SHong Zhang       PetscInt imark = -1;
1030d0d4cfc2SHong Zhang       if (v) {
1031d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1032d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1033d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1034d0d4cfc2SHong Zhang           else break;
1035d0d4cfc2SHong Zhang         }
1036d0d4cfc2SHong Zhang         imark = i;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1038d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1039d0d4cfc2SHong Zhang       }
1040d0d4cfc2SHong Zhang       if (idx) {
1041d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1042d0d4cfc2SHong Zhang         if (imark > -1) {
1043d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1044d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1045d0d4cfc2SHong Zhang           }
1046d0d4cfc2SHong Zhang         } else {
1047d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
104826fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1049d0d4cfc2SHong Zhang             else break;
1050d0d4cfc2SHong Zhang           }
1051d0d4cfc2SHong Zhang           imark = i;
1052d0d4cfc2SHong Zhang         }
1053d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1054d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1055d0d4cfc2SHong Zhang       }
1056d0d4cfc2SHong Zhang     } else {
1057d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1058d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1059d0d4cfc2SHong Zhang     }
1060d0d4cfc2SHong Zhang   }
1061d0d4cfc2SHong Zhang   *nz  = nztot;
1062d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1063d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1064a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1065a30f8f8cSSatish Balay }
1066a30f8f8cSSatish Balay 
10674a2ae208SSatish Balay #undef __FUNCT__
10684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10691302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1070a30f8f8cSSatish Balay {
1071a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1072a30f8f8cSSatish Balay 
1073a30f8f8cSSatish Balay   PetscFunctionBegin;
1074e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1075a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1076a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1077a30f8f8cSSatish Balay }
1078a30f8f8cSSatish Balay 
10794a2ae208SSatish Balay #undef __FUNCT__
1080d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1081d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1082d0d4cfc2SHong Zhang {
1083d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1084d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1085d0d4cfc2SHong Zhang 
1086d0d4cfc2SHong Zhang   PetscFunctionBegin;
1087d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1088d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1089d0d4cfc2SHong Zhang }
1090d0d4cfc2SHong Zhang #undef __FUNCT__
1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1092d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1093d0d4cfc2SHong Zhang {
1094d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1095d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1096d0d4cfc2SHong Zhang 
1097d0d4cfc2SHong Zhang   PetscFunctionBegin;
1098d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1099d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1100d0d4cfc2SHong Zhang }
1101d0d4cfc2SHong Zhang 
1102d0d4cfc2SHong Zhang #undef __FUNCT__
110399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110599cafbc1SBarry Smith {
110699cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110799cafbc1SBarry Smith   PetscErrorCode ierr;
110899cafbc1SBarry Smith 
110999cafbc1SBarry Smith   PetscFunctionBegin;
111099cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111199cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111299cafbc1SBarry Smith   PetscFunctionReturn(0);
111399cafbc1SBarry Smith }
111499cafbc1SBarry Smith 
111599cafbc1SBarry Smith #undef __FUNCT__
111699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111899cafbc1SBarry Smith {
111999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112099cafbc1SBarry Smith   PetscErrorCode ierr;
112199cafbc1SBarry Smith 
112299cafbc1SBarry Smith   PetscFunctionBegin;
112399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112599cafbc1SBarry Smith   PetscFunctionReturn(0);
112699cafbc1SBarry Smith }
112799cafbc1SBarry Smith 
112899cafbc1SBarry Smith #undef __FUNCT__
11294a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1130dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1131a30f8f8cSSatish Balay {
1132a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1133dfbe8321SBarry Smith   PetscErrorCode ierr;
1134a30f8f8cSSatish Balay 
1135a30f8f8cSSatish Balay   PetscFunctionBegin;
1136a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1139a30f8f8cSSatish Balay }
1140a30f8f8cSSatish Balay 
11414a2ae208SSatish Balay #undef __FUNCT__
11424a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1143dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1144a30f8f8cSSatish Balay {
1145a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1146a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1147dfbe8321SBarry Smith   PetscErrorCode ierr;
1148a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1149a30f8f8cSSatish Balay 
1150a30f8f8cSSatish Balay   PetscFunctionBegin;
1151d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
115226fbe8dcSKarl Rupp 
1153a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
115426fbe8dcSKarl Rupp 
1155a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1156a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
115726fbe8dcSKarl Rupp 
1158a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
115926fbe8dcSKarl Rupp 
1160a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1161a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1162a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1163a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1164a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1165a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1166a30f8f8cSSatish Balay     info->memory       = isend[3];
1167a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1168a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1169ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
117026fbe8dcSKarl Rupp 
1171a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1172a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1173a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1174a30f8f8cSSatish Balay     info->memory       = irecv[3];
1175a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1176a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1177ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
117826fbe8dcSKarl Rupp 
1179a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1180a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1181a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1182a30f8f8cSSatish Balay     info->memory       = irecv[3];
1183a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1184f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1185a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1186a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1187a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1188a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1189a30f8f8cSSatish Balay }
1190a30f8f8cSSatish Balay 
11914a2ae208SSatish Balay #undef __FUNCT__
11924a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1193ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1194a30f8f8cSSatish Balay {
1195a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1196d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1197dfbe8321SBarry Smith   PetscErrorCode ierr;
1198a30f8f8cSSatish Balay 
1199a30f8f8cSSatish Balay   PetscFunctionBegin;
1200e98b92d7SKris Buschelman   switch (op) {
1201512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1202e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1204a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1205e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12064e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12074e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1208e98b92d7SKris Buschelman     break;
1209e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12104e0d8c25SBarry Smith     a->roworiented = flg;
121126fbe8dcSKarl Rupp 
12124e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12134e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1214e98b92d7SKris Buschelman     break;
12154e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1216290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1217e98b92d7SKris Buschelman     break;
1218e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12194e0d8c25SBarry Smith     a->donotstash = flg;
1220e98b92d7SKris Buschelman     break;
1221e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12224e0d8c25SBarry Smith     a->ht_flag = flg;
1223e98b92d7SKris Buschelman     break;
12249a4540c5SBarry Smith   case MAT_HERMITIAN:
1225e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1226eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
122726fbe8dcSKarl Rupp 
1228547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1229eeffb40dSHong Zhang     break;
1230ffa07934SHong Zhang   case MAT_SPD:
1231ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1232ffa07934SHong Zhang     A->spd     = flg;
1233ffa07934SHong Zhang     if (flg) {
1234ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1235ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1236ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1237ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1238ffa07934SHong Zhang     }
1239ffa07934SHong Zhang     break;
124077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1241eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1242eeffb40dSHong Zhang     break;
124377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1244eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1245eeffb40dSHong Zhang     break;
12469a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1247e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1248290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124977e54ba9SKris Buschelman     break;
1250d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12514e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1252d0d4cfc2SHong Zhang     break;
1253d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12544e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1255d0d4cfc2SHong Zhang     break;
1256d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12574e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1258d0d4cfc2SHong Zhang     break;
1259e98b92d7SKris Buschelman   default:
1260e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1261a30f8f8cSSatish Balay   }
1262a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1263a30f8f8cSSatish Balay }
1264a30f8f8cSSatish Balay 
12654a2ae208SSatish Balay #undef __FUNCT__
12668115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1267fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1268a30f8f8cSSatish Balay {
1269dfbe8321SBarry Smith   PetscErrorCode ierr;
12706e111a19SKarl Rupp 
1271a30f8f8cSSatish Balay   PetscFunctionBegin;
1272815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1273999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1274fc4dec0aSBarry Smith   }
12758115998fSBarry Smith   PetscFunctionReturn(0);
1276a30f8f8cSSatish Balay }
1277a30f8f8cSSatish Balay 
12784a2ae208SSatish Balay #undef __FUNCT__
12794a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1280dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1281a30f8f8cSSatish Balay {
1282a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1283a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1284dfbe8321SBarry Smith   PetscErrorCode ierr;
12855e90f9d9SHong Zhang   PetscInt       nv,m,n;
1286ace3abfcSBarry Smith   PetscBool      flg;
1287a30f8f8cSSatish Balay 
1288a30f8f8cSSatish Balay   PetscFunctionBegin;
1289a30f8f8cSSatish Balay   if (ll != rr) {
1290b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1291e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1292a30f8f8cSSatish Balay   }
1293b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1294b3bf805bSHong Zhang 
12955e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1296e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1297b3bf805bSHong Zhang 
12985e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1299e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13005e90f9d9SHong Zhang 
1301ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13025e90f9d9SHong Zhang 
13035e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
13040298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
13055e90f9d9SHong Zhang 
13065e90f9d9SHong Zhang   /* scale the diagonal part */
1307a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1308a30f8f8cSSatish Balay 
13095e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1310ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13110298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1312a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1313a30f8f8cSSatish Balay }
1314a30f8f8cSSatish Balay 
13154a2ae208SSatish Balay #undef __FUNCT__
13164a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1317dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1318a30f8f8cSSatish Balay {
1319f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1320dfbe8321SBarry Smith   PetscErrorCode ierr;
1321a30f8f8cSSatish Balay 
1322a30f8f8cSSatish Balay   PetscFunctionBegin;
1323a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1324a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1325a30f8f8cSSatish Balay }
1326a30f8f8cSSatish Balay 
13276849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1328a30f8f8cSSatish Balay 
13294a2ae208SSatish Balay #undef __FUNCT__
13304a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1331ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1332a30f8f8cSSatish Balay {
1333a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1334a30f8f8cSSatish Balay   Mat            a,b,c,d;
1335ace3abfcSBarry Smith   PetscBool      flg;
1336dfbe8321SBarry Smith   PetscErrorCode ierr;
1337a30f8f8cSSatish Balay 
1338a30f8f8cSSatish Balay   PetscFunctionBegin;
1339a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1340a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1341a30f8f8cSSatish Balay 
1342a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1343abc0a331SBarry Smith   if (flg) {
1344a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1345a30f8f8cSSatish Balay   }
1346ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1347a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1348a30f8f8cSSatish Balay }
1349a30f8f8cSSatish Balay 
13504a2ae208SSatish Balay #undef __FUNCT__
13513c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13523c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13533c896bc6SHong Zhang {
13543c896bc6SHong Zhang   PetscErrorCode ierr;
13553c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13563c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
13573c896bc6SHong Zhang 
13583c896bc6SHong Zhang   PetscFunctionBegin;
13593c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13603c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1361d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13623c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1363d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13643c896bc6SHong Zhang   } else {
13653c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13663c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13673c896bc6SHong Zhang   }
13683c896bc6SHong Zhang   PetscFunctionReturn(0);
13693c896bc6SHong Zhang }
13703c896bc6SHong Zhang 
13713c896bc6SHong Zhang #undef __FUNCT__
13724994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13734994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1374273d9f13SBarry Smith {
1375dfbe8321SBarry Smith   PetscErrorCode ierr;
1376273d9f13SBarry Smith 
1377273d9f13SBarry Smith   PetscFunctionBegin;
1378535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1379273d9f13SBarry Smith   PetscFunctionReturn(0);
1380273d9f13SBarry Smith }
1381a5e6ed63SBarry Smith 
13824fe895cdSHong Zhang #undef __FUNCT__
13834fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13844fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13854fe895cdSHong Zhang {
13864fe895cdSHong Zhang   PetscErrorCode ierr;
13874fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
13884fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13894fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13904fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13914fe895cdSHong Zhang 
13924fe895cdSHong Zhang   PetscFunctionBegin;
13934fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13944fe895cdSHong Zhang     PetscScalar alpha = a;
13954fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
13964fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1397c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
13988b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
13994fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
14004fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1401c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
14028b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1403a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1404ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1405ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1406ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1407ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
14084fe895cdSHong Zhang   } else {
14094de5dceeSHong Zhang     Mat      B;
14104de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
14114de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1412d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14134de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
14144de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
14154de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
14164de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
14174de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
14184de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
14194de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
14204de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
14214de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
14224de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
14234de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
14244de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
14254de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
14264de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
14274de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1428d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14294de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
14304fe895cdSHong Zhang   }
14314fe895cdSHong Zhang   PetscFunctionReturn(0);
14324fe895cdSHong Zhang }
14334fe895cdSHong Zhang 
1434a5e6ed63SBarry Smith #undef __FUNCT__
1435a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14361302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1437a5e6ed63SBarry Smith {
14386849ba73SBarry Smith   PetscErrorCode ierr;
14391302d50aSBarry Smith   PetscInt       i;
1440ace3abfcSBarry Smith   PetscBool      flg;
1441a5e6ed63SBarry Smith 
14426849ba73SBarry Smith   PetscFunctionBegin;
14434dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1444a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1445a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
14464dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
14474dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1448a5e6ed63SBarry Smith     }
14494dcd73b1SHong Zhang   }
1450a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1451a5e6ed63SBarry Smith }
1452a5e6ed63SBarry Smith 
1453a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
14543964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1455a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1456a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1457a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
145897304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1459431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1460431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1461a30f8f8cSSatish Balay                                        0,
1462a30f8f8cSSatish Balay                                        0,
1463a30f8f8cSSatish Balay                                        0,
146497304618SKris Buschelman                                /* 10*/ 0,
1465a30f8f8cSSatish Balay                                        0,
1466a30f8f8cSSatish Balay                                        0,
146741f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1468a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
146997304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1470a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1471a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1472a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1473a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
147497304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1475a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1476a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1477a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1478d519adbfSMatthew Knepley                                /* 24*/ 0,
1479a30f8f8cSSatish Balay                                        0,
1480a30f8f8cSSatish Balay                                        0,
1481a30f8f8cSSatish Balay                                        0,
1482a30f8f8cSSatish Balay                                        0,
14834994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1484b5df2d14SHong Zhang                                        0,
1485a30f8f8cSSatish Balay                                        0,
1486a30f8f8cSSatish Balay                                        0,
1487a30f8f8cSSatish Balay                                        0,
1488d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1489a30f8f8cSSatish Balay                                        0,
1490a30f8f8cSSatish Balay                                        0,
1491a30f8f8cSSatish Balay                                        0,
1492a30f8f8cSSatish Balay                                        0,
1493d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1494a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1495d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1496a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
14973c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1498d519adbfSMatthew Knepley                                /* 44*/ 0,
1499a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1500a30f8f8cSSatish Balay                                        0,
1501a30f8f8cSSatish Balay                                        0,
1502a30f8f8cSSatish Balay                                        0,
1503f73d5cc4SBarry Smith                                /* 49*/ 0,
1504a30f8f8cSSatish Balay                                        0,
1505a30f8f8cSSatish Balay                                        0,
1506a30f8f8cSSatish Balay                                        0,
1507a30f8f8cSSatish Balay                                        0,
1508d519adbfSMatthew Knepley                                /* 54*/ 0,
1509a30f8f8cSSatish Balay                                        0,
1510a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1511a30f8f8cSSatish Balay                                        0,
1512a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
1513d519adbfSMatthew Knepley                                /* 59*/ 0,
1514a30f8f8cSSatish Balay                                        0,
1515a30f8f8cSSatish Balay                                        0,
1516357abbc8SBarry Smith                                        0,
151724d5174aSHong Zhang                                        0,
1518d519adbfSMatthew Knepley                                /* 64*/ 0,
151924d5174aSHong Zhang                                        0,
152024d5174aSHong Zhang                                        0,
152124d5174aSHong Zhang                                        0,
152224d5174aSHong Zhang                                        0,
1523d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
152424d5174aSHong Zhang                                        0,
152597304618SKris Buschelman                                        0,
152697304618SKris Buschelman                                        0,
152797304618SKris Buschelman                                        0,
1528d519adbfSMatthew Knepley                                /* 74*/ 0,
152997304618SKris Buschelman                                        0,
153097304618SKris Buschelman                                        0,
153197304618SKris Buschelman                                        0,
153297304618SKris Buschelman                                        0,
1533d519adbfSMatthew Knepley                                /* 79*/ 0,
153497304618SKris Buschelman                                        0,
153597304618SKris Buschelman                                        0,
153697304618SKris Buschelman                                        0,
15375bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1538d519adbfSMatthew Knepley                                /* 84*/ 0,
1539865e5f61SKris Buschelman                                        0,
1540865e5f61SKris Buschelman                                        0,
1541865e5f61SKris Buschelman                                        0,
1542865e5f61SKris Buschelman                                        0,
1543d519adbfSMatthew Knepley                                /* 89*/ 0,
1544865e5f61SKris Buschelman                                        0,
1545865e5f61SKris Buschelman                                        0,
1546865e5f61SKris Buschelman                                        0,
1547865e5f61SKris Buschelman                                        0,
1548d519adbfSMatthew Knepley                                /* 94*/ 0,
1549865e5f61SKris Buschelman                                        0,
1550865e5f61SKris Buschelman                                        0,
155199cafbc1SBarry Smith                                        0,
155299cafbc1SBarry Smith                                        0,
1553d519adbfSMatthew Knepley                                /* 99*/ 0,
155499cafbc1SBarry Smith                                        0,
155599cafbc1SBarry Smith                                        0,
155699cafbc1SBarry Smith                                        0,
155799cafbc1SBarry Smith                                        0,
1558d519adbfSMatthew Knepley                                /*104*/ 0,
155999cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1560d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1561d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
156295936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
156395936485SShri Abhyankar                                /*109*/ 0,
156495936485SShri Abhyankar                                        0,
156595936485SShri Abhyankar                                        0,
156695936485SShri Abhyankar                                        0,
156795936485SShri Abhyankar                                        0,
156895936485SShri Abhyankar                                /*114*/ 0,
156995936485SShri Abhyankar                                        0,
157095936485SShri Abhyankar                                        0,
157195936485SShri Abhyankar                                        0,
157295936485SShri Abhyankar                                        0,
157395936485SShri Abhyankar                                /*119*/ 0,
157495936485SShri Abhyankar                                        0,
157595936485SShri Abhyankar                                        0,
15763964eb88SJed Brown                                        0,
15773964eb88SJed Brown                                        0,
15783964eb88SJed Brown                                /*124*/ 0,
15793964eb88SJed Brown                                        0,
15803964eb88SJed Brown                                        0,
15813964eb88SJed Brown                                        0,
15823964eb88SJed Brown                                        0,
15833964eb88SJed Brown                                /*129*/ 0,
15843964eb88SJed Brown                                        0,
15853964eb88SJed Brown                                        0,
15863964eb88SJed Brown                                        0,
15873964eb88SJed Brown                                        0,
15883964eb88SJed Brown                                /*134*/ 0,
15893964eb88SJed Brown                                        0,
15903964eb88SJed Brown                                        0,
15913964eb88SJed Brown                                        0,
15923964eb88SJed Brown                                        0,
15933964eb88SJed Brown                                /*139*/ 0,
1594f9426fe0SMark Adams                                        0,
159559f5e6ceSHong Zhang                                        0,
159659f5e6ceSHong Zhang                                        0,
159759f5e6ceSHong Zhang                                        0,
159859f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
159999cafbc1SBarry Smith };
1600a30f8f8cSSatish Balay 
16014a2ae208SSatish Balay #undef __FUNCT__
16024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
160311bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1604a30f8f8cSSatish Balay {
1605a30f8f8cSSatish Balay   PetscFunctionBegin;
1606a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1607a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1608a30f8f8cSSatish Balay }
1609a30f8f8cSSatish Balay 
16104a2ae208SSatish Balay #undef __FUNCT__
1611a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1612b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1613a23d5eceSKris Buschelman {
1614a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1615dfbe8321SBarry Smith   PetscErrorCode ierr;
1616535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1617a23d5eceSKris Buschelman 
1618a23d5eceSKris Buschelman   PetscFunctionBegin;
161933d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
162026283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
162126283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1622e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1623899cda47SBarry Smith 
1624a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1625d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1626d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1627c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1628a23d5eceSKris Buschelman 
1629d0f46423SBarry Smith   B->rmap->bs = bs;
1630a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1631a23d5eceSKris Buschelman   b->mbs      = mbs;
1632a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1633de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1634de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1635a23d5eceSKris Buschelman 
1636a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1637d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1638a23d5eceSKris Buschelman   }
1639d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1640d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1641a23d5eceSKris Buschelman 
1642d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1643d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1644a23d5eceSKris Buschelman 
1645526dfc15SBarry Smith   if (!B->preallocated) {
1646f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1647d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16489c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
16493bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1650f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1651d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16524aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
16533bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1654ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1655526dfc15SBarry Smith   }
1656a23d5eceSKris Buschelman 
1657526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1658526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
165926fbe8dcSKarl Rupp 
1660526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1661a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1662a23d5eceSKris Buschelman }
1663a23d5eceSKris Buschelman 
1664dfb205c3SBarry Smith #undef __FUNCT__
1665dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1666dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1667dfb205c3SBarry Smith {
1668dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1669dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1670dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1671dfb205c3SBarry Smith   PetscScalar    *values=0;
1672dfb205c3SBarry Smith   PetscErrorCode ierr;
1673dfb205c3SBarry Smith 
1674dfb205c3SBarry Smith   PetscFunctionBegin;
1675ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1676dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1677dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1678dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1679dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1680e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1681dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1682dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1683dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1684dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1685dfb205c3SBarry Smith 
1686dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1687dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1688dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1689dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1690dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1691dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1692dfb205c3SBarry Smith     JJ     = jj + ii[i];
1693dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1694dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1695dfb205c3SBarry Smith       JJ++;
1696dfb205c3SBarry Smith     }
1697dfb205c3SBarry Smith     d = 0;
1698dfb205c3SBarry Smith     for (; j<nz; j++) {
1699dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1700dfb205c3SBarry Smith       d++;
1701dfb205c3SBarry Smith     }
1702dfb205c3SBarry Smith     d_nnz[i] = d;
1703dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1704dfb205c3SBarry Smith   }
1705dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1706dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1707dfb205c3SBarry Smith 
1708dfb205c3SBarry Smith   values = (PetscScalar*)V;
1709dfb205c3SBarry Smith   if (!values) {
1710785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1711dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1712dfb205c3SBarry Smith   }
1713dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1714dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1715dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1716dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1717dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1718dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1719dfb205c3SBarry Smith   }
1720dfb205c3SBarry Smith 
1721dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1722dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1723dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17247827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1725dfb205c3SBarry Smith   PetscFunctionReturn(0);
1726dfb205c3SBarry Smith }
1727dfb205c3SBarry Smith 
17280bad9183SKris Buschelman /*MC
1729fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1730828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1731828413b8SBarry Smith    the matrix is stored.
1732828413b8SBarry Smith 
1733828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1734828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17350bad9183SKris Buschelman 
17360bad9183SKris Buschelman    Options Database Keys:
17370bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17380bad9183SKris Buschelman 
17390bad9183SKris Buschelman   Level: beginner
17400bad9183SKris Buschelman 
17410bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17420bad9183SKris Buschelman M*/
17430bad9183SKris Buschelman 
17448cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1745aa5a9175SDahai Guo 
1746a23d5eceSKris Buschelman #undef __FUNCT__
17474a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17488cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1749b5df2d14SHong Zhang {
1750b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1751dfbe8321SBarry Smith   PetscErrorCode ierr;
175294ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
1753b5df2d14SHong Zhang 
1754b5df2d14SHong Zhang   PetscFunctionBegin;
1755b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1756b0a32e0cSBarry Smith   B->data = (void*)b;
1757b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1758b5df2d14SHong Zhang 
1759b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1760b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1761b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1762b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
176326fbe8dcSKarl Rupp 
1764ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1765ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1766b5df2d14SHong Zhang 
1767b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1768854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
1769b5df2d14SHong Zhang 
1770b5df2d14SHong Zhang   /* build cache for off array entries formed */
1771ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
177226fbe8dcSKarl Rupp 
1773b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
17740298fd71SBarry Smith   b->colmap      = NULL;
17750298fd71SBarry Smith   b->garray      = NULL;
1776b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1777b5df2d14SHong Zhang 
1778b5df2d14SHong Zhang   /* stuff used in block assembly */
1779b5df2d14SHong Zhang   b->barray = 0;
1780b5df2d14SHong Zhang 
1781b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1782b5df2d14SHong Zhang   b->lvec    = 0;
1783b5df2d14SHong Zhang   b->Mvctx   = 0;
178440781036SHong Zhang   b->slvec0  = 0;
178540781036SHong Zhang   b->slvec0b = 0;
178640781036SHong Zhang   b->slvec1  = 0;
178740781036SHong Zhang   b->slvec1a = 0;
178840781036SHong Zhang   b->slvec1b = 0;
178940781036SHong Zhang   b->sMvctx  = 0;
1790b5df2d14SHong Zhang 
1791b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1792b5df2d14SHong Zhang   b->rowindices   = 0;
1793b5df2d14SHong Zhang   b->rowvalues    = 0;
1794b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1795b5df2d14SHong Zhang 
1796b5df2d14SHong Zhang   /* hash table stuff */
1797b5df2d14SHong Zhang   b->ht           = 0;
1798b5df2d14SHong Zhang   b->hd           = 0;
1799b5df2d14SHong Zhang   b->ht_size      = 0;
1800b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1801b5df2d14SHong Zhang   b->ht_fact      = 0;
1802b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1803b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1804b5df2d14SHong Zhang 
18057a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18067a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
18077a868f3eSHong Zhang 
180859ffdab8SBarry Smith   b->in_loc = 0;
180959ffdab8SBarry Smith   b->v_loc  = 0;
181059ffdab8SBarry Smith   b->n_loc  = 0;
181194ae4db5SBarry Smith 
1812bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1813bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1814bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1815bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1816bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1817bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1818*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1819*6214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
1820*6214f412SHong Zhang #endif
1821aa5a9175SDahai Guo 
182223ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
182323ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
182423ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
182523ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
182626fbe8dcSKarl Rupp 
182717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
182894ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
182994ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
183094ae4db5SBarry Smith   if (flg) {
183194ae4db5SBarry Smith     PetscReal fact = 1.39;
183294ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
183394ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
183494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
183594ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
183694ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
183794ae4db5SBarry Smith   }
183894ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1839b5df2d14SHong Zhang   PetscFunctionReturn(0);
1840b5df2d14SHong Zhang }
1841b5df2d14SHong Zhang 
1842209238afSKris Buschelman /*MC
1843002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1844209238afSKris Buschelman 
1845209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1846209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1847209238afSKris Buschelman 
1848209238afSKris Buschelman    Options Database Keys:
1849209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1850209238afSKris Buschelman 
1851209238afSKris Buschelman   Level: beginner
1852209238afSKris Buschelman 
1853209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1854209238afSKris Buschelman M*/
1855209238afSKris Buschelman 
18564a2ae208SSatish Balay #undef __FUNCT__
18574a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1858b5df2d14SHong Zhang /*@C
1859b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1860b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1861b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1862b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang    Collective on Mat
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang    Input Parameters:
18671c4f3114SJed Brown +  B - the matrix
1868bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1869bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1870b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1871b5df2d14SHong Zhang            submatrix  (same for all local rows)
1872b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18736d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18740298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
187595742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1876b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1877b5df2d14SHong Zhang            submatrix (same for all local rows).
1878b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1879c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
18800298fd71SBarry Smith            (possibly different for each block row) or NULL.
1881b5df2d14SHong Zhang 
1882b5df2d14SHong Zhang 
1883b5df2d14SHong Zhang    Options Database Keys:
1884b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1885b5df2d14SHong Zhang                      block calculations (much slower)
1886b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang    Notes:
1889b5df2d14SHong Zhang 
1890b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1891b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1892b5df2d14SHong Zhang 
189349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
189449a6f317SBarry Smith 
1895b5df2d14SHong Zhang    Storage Information:
1896b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1897b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1898b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1899b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1900b5df2d14SHong Zhang 
1901b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1902b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
19030298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1904b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1905b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1906b5df2d14SHong Zhang 
1907aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1908aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1909aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1910aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1911aa95bbe8SBarry Smith 
1912b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1913b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1914b5df2d14SHong Zhang 
1915b5df2d14SHong Zhang .vb
1916b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1917a4b1a0f6SJed Brown           --------------------------
1918c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1919c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1920c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
1921a4b1a0f6SJed Brown           --------------------------
1922b5df2d14SHong Zhang .ve
1923b5df2d14SHong Zhang 
1924b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1925b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19266d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19276d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1928b5df2d14SHong Zhang 
19296d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19306d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1931c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1932c2fc9fa9SBarry Smith 
1933b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1934b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1935b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1936b5df2d14SHong Zhang    matrices.
1937b5df2d14SHong Zhang 
1938b5df2d14SHong Zhang    Level: intermediate
1939b5df2d14SHong Zhang 
1940b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1941b5df2d14SHong Zhang 
1942ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
1943b5df2d14SHong Zhang @*/
19447087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1945b5df2d14SHong Zhang {
19464ac538c5SBarry Smith   PetscErrorCode ierr;
1947b5df2d14SHong Zhang 
1948b5df2d14SHong Zhang   PetscFunctionBegin;
19496ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19506ba663aaSJed Brown   PetscValidType(B,1);
19516ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19524ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1953b5df2d14SHong Zhang   PetscFunctionReturn(0);
1954b5df2d14SHong Zhang }
1955b5df2d14SHong Zhang 
19564a2ae208SSatish Balay #undef __FUNCT__
195769b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1958a30f8f8cSSatish Balay /*@C
195969b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1960a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1961a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1962a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1963a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1964a30f8f8cSSatish Balay 
1965a30f8f8cSSatish Balay    Collective on MPI_Comm
1966a30f8f8cSSatish Balay 
1967a30f8f8cSSatish Balay    Input Parameters:
1968a30f8f8cSSatish Balay +  comm - MPI communicator
1969bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1970bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1971a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1972a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1973a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1974a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1975a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1976a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1977a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1978a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1979a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1980a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1981a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19826d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19830298fd71SBarry Smith            (possibly different for each block block row) or NULL.
198495742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
198595742e49SBarry Smith            set its value even if it is zero.
1986a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1987a30f8f8cSSatish Balay            submatrix (same for all local rows).
1988a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1989a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
19900298fd71SBarry Smith            each block row) or NULL.
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay    Output Parameter:
1993a30f8f8cSSatish Balay .  A - the matrix
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay    Options Database Keys:
1996a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1997a30f8f8cSSatish Balay                      block calculations (much slower)
1998a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1999a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2000a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2001a30f8f8cSSatish Balay 
2002175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2003ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2004175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2005175b88e8SBarry Smith 
2006a30f8f8cSSatish Balay    Notes:
2007d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20086d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2009d1be2dadSMatthew Knepley 
2010a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2011a30f8f8cSSatish Balay    (possibly both).
2012a30f8f8cSSatish Balay 
2013a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2014a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2015a30f8f8cSSatish Balay 
201649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
201749a6f317SBarry Smith 
2018a30f8f8cSSatish Balay    Storage Information:
2019a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2020a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2021a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2022a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2023a30f8f8cSSatish Balay 
2024a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2025a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
20260298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2027a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2028a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2029a30f8f8cSSatish Balay 
2030a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2031a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2032a30f8f8cSSatish Balay 
2033a30f8f8cSSatish Balay .vb
2034a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2035a4b1a0f6SJed Brown           --------------------------
2036c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2037c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2038c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2039a4b1a0f6SJed Brown           --------------------------
2040a30f8f8cSSatish Balay .ve
2041a30f8f8cSSatish Balay 
2042a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2043a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20446d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20456d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2046a30f8f8cSSatish Balay 
20476d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20486d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2049a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2050a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2051a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2052a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2053a30f8f8cSSatish Balay    matrices.
2054a30f8f8cSSatish Balay 
2055a30f8f8cSSatish Balay    Level: intermediate
2056a30f8f8cSSatish Balay 
2057a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2058a30f8f8cSSatish Balay 
205969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2060a30f8f8cSSatish Balay @*/
2061a30f8f8cSSatish Balay 
206269b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2063a30f8f8cSSatish Balay {
20646849ba73SBarry Smith   PetscErrorCode ierr;
20651302d50aSBarry Smith   PetscMPIInt    size;
2066a30f8f8cSSatish Balay 
2067a30f8f8cSSatish Balay   PetscFunctionBegin;
2068f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2069f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2070273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2071273d9f13SBarry Smith   if (size > 1) {
2072b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2073b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2074273d9f13SBarry Smith   } else {
2075273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2076273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2077273d9f13SBarry Smith   }
2078a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2079a30f8f8cSSatish Balay }
2080a30f8f8cSSatish Balay 
2081a30f8f8cSSatish Balay 
20824a2ae208SSatish Balay #undef __FUNCT__
20834a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2085a30f8f8cSSatish Balay {
2086a30f8f8cSSatish Balay   Mat            mat;
2087a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2088dfbe8321SBarry Smith   PetscErrorCode ierr;
2089d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2090387bc808SHong Zhang   PetscScalar    *array;
2091a30f8f8cSSatish Balay 
2092a30f8f8cSSatish Balay   PetscFunctionBegin;
2093a30f8f8cSSatish Balay   *newmat = 0;
209426fbe8dcSKarl Rupp 
2095ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2096d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20977adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20981d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
20991e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21001e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2101e1b6402fSHong Zhang 
2102d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2103273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
210482327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21057fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21067fff6886SHong Zhang 
2107b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2108a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2109a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2110a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2111a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2112a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2113a30f8f8cSSatish Balay 
2114899cda47SBarry Smith 
2115a30f8f8cSSatish Balay   a->size         = oldmat->size;
2116a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2117a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2118a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2119a30f8f8cSSatish Balay   a->rowindices   = 0;
2120a30f8f8cSSatish Balay   a->rowvalues    = 0;
2121a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2122a30f8f8cSSatish Balay   a->barray       = 0;
2123899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2124899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2125899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2126899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2127a30f8f8cSSatish Balay 
2128a30f8f8cSSatish Balay   /* hash table stuff */
2129a30f8f8cSSatish Balay   a->ht           = 0;
2130a30f8f8cSSatish Balay   a->hd           = 0;
2131a30f8f8cSSatish Balay   a->ht_size      = 0;
2132a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2133a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2134a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2135a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2136a30f8f8cSSatish Balay 
2137899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2138a30f8f8cSSatish Balay   if (oldmat->colmap) {
2139a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2140a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2141a30f8f8cSSatish Balay #else
2142854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
21433bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21441302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2145a30f8f8cSSatish Balay #endif
2146a30f8f8cSSatish Balay   } else a->colmap = 0;
2147387bc808SHong Zhang 
2148a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2149785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
21503bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21511302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2152a30f8f8cSSatish Balay   } else a->garray = 0;
2153a30f8f8cSSatish Balay 
2154ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2155a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
21563bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2157a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
21583bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
215982327fa8SHong Zhang 
216082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
21613bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
216282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
21633bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2164387bc808SHong Zhang 
2165387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21661ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2167778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2168778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21691ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21701ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2171778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21721ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
21733bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
21743bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
21753bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
21763bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
21773bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2178387bc808SHong Zhang 
2179387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2180387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2181387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
21823bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
218382327fa8SHong Zhang 
2184a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
21853bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2186a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
21873bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2188140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   *newmat = mat;
2190a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2191a30f8f8cSSatish Balay }
2192a30f8f8cSSatish Balay 
21934a2ae208SSatish Balay #undef __FUNCT__
21945bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2195112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
219695936485SShri Abhyankar {
219795936485SShri Abhyankar   PetscErrorCode ierr;
219895936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
219995936485SShri Abhyankar   PetscScalar    *vals,*buf;
2200ce94432eSBarry Smith   MPI_Comm       comm;
220195936485SShri Abhyankar   MPI_Status     status;
2202adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2203adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
220495936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
22053059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
220695936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
220795936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
220895936485SShri Abhyankar   int            fd;
220995936485SShri Abhyankar 
221095936485SShri Abhyankar   PetscFunctionBegin;
2211ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22120298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22130298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
221495936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
22153059b6faSBarry Smith   if (bs < 0) bs = 1;
221695936485SShri Abhyankar 
221795936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
221895936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
221995936485SShri Abhyankar   if (!rank) {
222095936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
222195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
222295936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
222395936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
222495936485SShri Abhyankar   }
222595936485SShri Abhyankar 
222695936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
222795936485SShri Abhyankar 
222895936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
222926fbe8dcSKarl Rupp   M    = header[1];
223026fbe8dcSKarl Rupp   N    = header[2];
223195936485SShri Abhyankar 
223295936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
223395936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
223495936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
223595936485SShri Abhyankar 
223695936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
223795936485SShri Abhyankar   if (sizesset) {
223895936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
223995936485SShri Abhyankar   }
2240abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2241abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
224295936485SShri Abhyankar 
224395936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
224495936485SShri Abhyankar 
224595936485SShri Abhyankar   /*
224695936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
224795936485SShri Abhyankar      divisible by the blocksize
224895936485SShri Abhyankar   */
224995936485SShri Abhyankar   Mbs        = M/bs;
225095936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
225195936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
225295936485SShri Abhyankar   else                  Mbs++;
225395936485SShri Abhyankar   if (extra_rows &&!rank) {
225495936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
225595936485SShri Abhyankar   }
225695936485SShri Abhyankar 
225795936485SShri Abhyankar   /* determine ownership of all rows */
225895936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
225995936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
226095936485SShri Abhyankar     m   = mbs*bs;
226195936485SShri Abhyankar   } else { /* User Set */
226295936485SShri Abhyankar     m   = newmat->rmap->n;
226395936485SShri Abhyankar     mbs = m/bs;
226495936485SShri Abhyankar   }
2265dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
22664dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
226795936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
226895936485SShri Abhyankar   rowners[0] = 0;
226995936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
227095936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
227195936485SShri Abhyankar   rstart = rowners[rank];
227295936485SShri Abhyankar   rend   = rowners[rank+1];
227395936485SShri Abhyankar 
227495936485SShri Abhyankar   /* distribute row lengths to all processors */
2275785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
227695936485SShri Abhyankar   if (!rank) {
2277854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
227895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
227995936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2280785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
228195936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
228295936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228395936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
228495936485SShri Abhyankar   } else {
228595936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
228695936485SShri Abhyankar   }
228795936485SShri Abhyankar 
228895936485SShri Abhyankar   if (!rank) {   /* procs[0] */
228995936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2290785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
229195936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
229295936485SShri Abhyankar     for (i=0; i<size; i++) {
229395936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
229495936485SShri Abhyankar         procsnz[i] += rowlengths[j];
229595936485SShri Abhyankar       }
229695936485SShri Abhyankar     }
229795936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
229895936485SShri Abhyankar 
229995936485SShri Abhyankar     /* determine max buffer needed and allocate it */
230095936485SShri Abhyankar     maxnz = 0;
230195936485SShri Abhyankar     for (i=0; i<size; i++) {
230295936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
230395936485SShri Abhyankar     }
2304785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
230595936485SShri Abhyankar 
230695936485SShri Abhyankar     /* read in my part of the matrix column indices  */
230795936485SShri Abhyankar     nz     = procsnz[0];
2308785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
230995936485SShri Abhyankar     mycols = ibuf;
231095936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
231195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
231226fbe8dcSKarl Rupp     if (size == 1) {
231326fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
231426fbe8dcSKarl Rupp     }
231595936485SShri Abhyankar 
231695936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
231795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
231895936485SShri Abhyankar       nz   = procsnz[i];
231995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
232095936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
232195936485SShri Abhyankar     }
232295936485SShri Abhyankar     /* read in the stuff for the last proc */
232395936485SShri Abhyankar     if (size != 1) {
232495936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
232595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
232695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
232795936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
232895936485SShri Abhyankar     }
232995936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
233095936485SShri Abhyankar   } else {  /* procs[i], i>0 */
233195936485SShri Abhyankar     /* determine buffer space needed for message */
233295936485SShri Abhyankar     nz = 0;
233326fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2334785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
233595936485SShri Abhyankar     mycols = ibuf;
233695936485SShri Abhyankar     /* receive message of column indices*/
233795936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
233895936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
233995936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
234095936485SShri Abhyankar   }
234195936485SShri Abhyankar 
234295936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2343dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2344dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
234595936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234695936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234795936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
234895936485SShri Abhyankar   rowcount = 0;
234995936485SShri Abhyankar   nzcount  = 0;
235095936485SShri Abhyankar   for (i=0; i<mbs; i++) {
235195936485SShri Abhyankar     dcount  = 0;
235295936485SShri Abhyankar     odcount = 0;
235395936485SShri Abhyankar     for (j=0; j<bs; j++) {
235495936485SShri Abhyankar       kmax = locrowlens[rowcount];
235595936485SShri Abhyankar       for (k=0; k<kmax; k++) {
235695936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
235795936485SShri Abhyankar         if (!mask[tmp]) {
235895936485SShri Abhyankar           mask[tmp] = 1;
235995936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
236095936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
236195936485SShri Abhyankar         }
236295936485SShri Abhyankar       }
236395936485SShri Abhyankar       rowcount++;
236495936485SShri Abhyankar     }
236595936485SShri Abhyankar 
236695936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
236795936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
236895936485SShri Abhyankar 
236995936485SShri Abhyankar     /* zero out the mask elements we set */
237095936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
237195936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
237295936485SShri Abhyankar   }
237395936485SShri Abhyankar   if (!sizesset) {
237495936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
237595936485SShri Abhyankar   }
237695936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
23776816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
237895936485SShri Abhyankar 
237995936485SShri Abhyankar   if (!rank) {
2380785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
238195936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
238295936485SShri Abhyankar     nz     = procsnz[0];
238395936485SShri Abhyankar     vals   = buf;
238495936485SShri Abhyankar     mycols = ibuf;
238595936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
238695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
238726fbe8dcSKarl Rupp     if (size == 1) {
238826fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
238926fbe8dcSKarl Rupp     }
239095936485SShri Abhyankar 
239195936485SShri Abhyankar     /* insert into matrix */
239295936485SShri Abhyankar     jj = rstart*bs;
239395936485SShri Abhyankar     for (i=0; i<m; i++) {
239495936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
239595936485SShri Abhyankar       mycols += locrowlens[i];
239695936485SShri Abhyankar       vals   += locrowlens[i];
239795936485SShri Abhyankar       jj++;
239895936485SShri Abhyankar     }
239995936485SShri Abhyankar 
240095936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
240195936485SShri Abhyankar     for (i=1; i<size-1; i++) {
240295936485SShri Abhyankar       nz   = procsnz[i];
240395936485SShri Abhyankar       vals = buf;
240495936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
240595936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
240695936485SShri Abhyankar     }
240795936485SShri Abhyankar     /* the last proc */
240895936485SShri Abhyankar     if (size != 1) {
240995936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
241095936485SShri Abhyankar       vals = buf;
241195936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
241295936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
241395936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
241495936485SShri Abhyankar     }
241595936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
241695936485SShri Abhyankar 
241795936485SShri Abhyankar   } else {
241895936485SShri Abhyankar     /* receive numeric values */
2419785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
242095936485SShri Abhyankar 
242195936485SShri Abhyankar     /* receive message of values*/
242295936485SShri Abhyankar     vals   = buf;
242395936485SShri Abhyankar     mycols = ibuf;
242495936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
242595936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
242695936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
242795936485SShri Abhyankar 
242895936485SShri Abhyankar     /* insert into matrix */
242995936485SShri Abhyankar     jj = rstart*bs;
243095936485SShri Abhyankar     for (i=0; i<m; i++) {
243195936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
243295936485SShri Abhyankar       mycols += locrowlens[i];
243395936485SShri Abhyankar       vals   += locrowlens[i];
243495936485SShri Abhyankar       jj++;
243595936485SShri Abhyankar     }
243695936485SShri Abhyankar   }
243795936485SShri Abhyankar 
243895936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
243995936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
244095936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
244195936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
244295936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
244395936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
244495936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244595936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
244695936485SShri Abhyankar   PetscFunctionReturn(0);
244795936485SShri Abhyankar }
244895936485SShri Abhyankar 
244995936485SShri Abhyankar #undef __FUNCT__
24504a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2451dcf5cc72SBarry Smith /*XXXXX@
2452a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2453a30f8f8cSSatish Balay 
2454a30f8f8cSSatish Balay    Input Parameters:
2455a30f8f8cSSatish Balay .  mat  - the matrix
2456a30f8f8cSSatish Balay .  fact - factor
2457a30f8f8cSSatish Balay 
2458c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2459a30f8f8cSSatish Balay 
2460a30f8f8cSSatish Balay    Level: advanced
2461a30f8f8cSSatish Balay 
2462a30f8f8cSSatish Balay   Notes:
2463a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2464a30f8f8cSSatish Balay 
2465a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2466a30f8f8cSSatish Balay 
2467a30f8f8cSSatish Balay .seealso: MatSetOption()
2468dcf5cc72SBarry Smith @XXXXX*/
2469dcf5cc72SBarry Smith 
247024d5174aSHong Zhang 
24714a2ae208SSatish Balay #undef __FUNCT__
2472985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2473985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
247424d5174aSHong Zhang {
247524d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2476f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2477ca54ac64SHong Zhang   PetscReal      atmp;
247887828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2479dfbe8321SBarry Smith   PetscErrorCode ierr;
24801302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24811302d50aSBarry Smith   PetscMPIInt    rank,size;
24821302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
248387828ca2SBarry Smith   PetscScalar    *va;
24848a1c53f2SBarry Smith   MatScalar      *ba;
2485f4c0e9e4SHong Zhang   MPI_Status     stat;
248624d5174aSHong Zhang 
248724d5174aSHong Zhang   PetscFunctionBegin;
2488e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
24890298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
24901ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2491f4c0e9e4SHong Zhang 
2492ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2493ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2494f4c0e9e4SHong Zhang 
2495d0f46423SBarry Smith   bs  = A->rmap->bs;
2496f4c0e9e4SHong Zhang   mbs = a->mbs;
2497f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2498f4c0e9e4SHong Zhang   ba  = b->a;
2499f4c0e9e4SHong Zhang   bi  = b->i;
2500f4c0e9e4SHong Zhang   bj  = b->j;
2501f4c0e9e4SHong Zhang 
2502f4c0e9e4SHong Zhang   /* find ownerships */
2503d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2504f4c0e9e4SHong Zhang 
2505f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2506785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2507ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2508f4c0e9e4SHong Zhang 
2509f4c0e9e4SHong Zhang   /* row_max for B */
2510b8475685SHong Zhang   if (rank != size-1) {
2511f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2512f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2513f4c0e9e4SHong Zhang       brow  = bs*i;
2514f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2515f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2516f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2517ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
251804d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2519f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2520f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2521ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2522ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2523f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2524f4c0e9e4SHong Zhang           }
2525f4c0e9e4SHong Zhang         }
2526f4c0e9e4SHong Zhang         bj++;
2527f4c0e9e4SHong Zhang       }
2528f4c0e9e4SHong Zhang     }
2529f4c0e9e4SHong Zhang 
2530f4c0e9e4SHong Zhang     /* send values to its owners */
2531f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2532f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2533ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2534ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2535ca54ac64SHong Zhang     }
2536f4c0e9e4SHong Zhang   }
2537f4c0e9e4SHong Zhang 
2538f4c0e9e4SHong Zhang   /* receive values */
2539ca54ac64SHong Zhang   if (rank) {
2540f4c0e9e4SHong Zhang     rvalues = work;
2541ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2542f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2543ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2544f4c0e9e4SHong Zhang       /* process values */
2545f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2546ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2547f4c0e9e4SHong Zhang       }
2548f4c0e9e4SHong Zhang     }
2549ca54ac64SHong Zhang   }
2550f4c0e9e4SHong Zhang 
25511ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2552ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
255324d5174aSHong Zhang   PetscFunctionReturn(0);
255424d5174aSHong Zhang }
25552798e883SHong Zhang 
25562798e883SHong Zhang #undef __FUNCT__
255741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
255841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25592798e883SHong Zhang {
25602798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2561dfbe8321SBarry Smith   PetscErrorCode    ierr;
2562d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25633649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2564ffe4fb16SHong Zhang   Vec               bb1;
25653649974fSBarry Smith   const PetscScalar *b;
2566ffe4fb16SHong Zhang 
2567ffe4fb16SHong Zhang   PetscFunctionBegin;
2568e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2569e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2570ffe4fb16SHong Zhang 
2571a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
257241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2573a2b30743SBarry Smith     PetscFunctionReturn(0);
2574a2b30743SBarry Smith   }
2575a2b30743SBarry Smith 
2576ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2577ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
257841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2579ffe4fb16SHong Zhang       its--;
2580ffe4fb16SHong Zhang     }
2581ffe4fb16SHong Zhang 
2582ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2583ffe4fb16SHong Zhang     while (its--) {
2584ffe4fb16SHong Zhang 
2585ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2586ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2587ffe4fb16SHong Zhang 
2588ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25891ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25901ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2591ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25921ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2593ffe4fb16SHong Zhang 
2594efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2595ffe4fb16SHong Zhang 
2596ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25971ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25983649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2599ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26001ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2601ffe4fb16SHong Zhang 
2602ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2603fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2604ffe4fb16SHong Zhang 
2605ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26061ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2607a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2608ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2609ffe4fb16SHong Zhang 
2610ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2611ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2612ffe4fb16SHong Zhang 
2613ffe4fb16SHong Zhang       /* local diagonal sweep */
261441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2615ffe4fb16SHong Zhang     }
26166bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2617fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
261841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2619fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
262041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2622fa22f6d0SBarry Smith     Vec               xx1;
2623ace3abfcSBarry Smith     PetscBool         hasop;
262420f1ed55SBarry Smith     const PetscScalar *diag;
2625887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
262620f1ed55SBarry Smith     PetscInt          i,n;
2627fa22f6d0SBarry Smith 
2628fa22f6d0SBarry Smith     if (!mat->xx1) {
2629fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2630fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2631fa22f6d0SBarry Smith     }
2632fa22f6d0SBarry Smith     xx1 = mat->xx1;
2633fa22f6d0SBarry Smith     bb1 = mat->bb1;
2634fa22f6d0SBarry Smith 
263541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2636fa22f6d0SBarry Smith 
2637fa22f6d0SBarry Smith     if (!mat->diag) {
2638effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26392a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2640fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2641fa22f6d0SBarry Smith     }
2642fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2643fa22f6d0SBarry Smith 
2644fa22f6d0SBarry Smith     if (hasop) {
2645fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2646887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
264720f1ed55SBarry Smith     } else {
264820f1ed55SBarry Smith       /*
264920f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
265020f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2651887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
265220f1ed55SBarry Smith       */
265320f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26543649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26553649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
265620f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
265720f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2658887ee2caSBarry Smith       if (omega == 1.0) {
265926fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
266020f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2661887ee2caSBarry Smith       } else {
266226fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2663887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2664887ee2caSBarry Smith       }
266520f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26663649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26673649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
266820f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
266920f1ed55SBarry Smith     }
2670fa22f6d0SBarry Smith 
2671fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2672fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2673fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2674fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2675fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2676fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2677fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2678fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2679fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2680fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2681effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2682fa22f6d0SBarry Smith 
2683fa22f6d0SBarry Smith     /* local sweep */
268441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2685fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2686f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2687ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2688ffe4fb16SHong Zhang }
2689ffe4fb16SHong Zhang 
2690ffe4fb16SHong Zhang #undef __FUNCT__
269141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
269241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2693ffe4fb16SHong Zhang {
2694ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2695dfbe8321SBarry Smith   PetscErrorCode ierr;
26962798e883SHong Zhang   Vec            lvec1,bb1;
26972798e883SHong Zhang 
26982798e883SHong Zhang   PetscFunctionBegin;
2699e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2700e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27012798e883SHong Zhang 
2702c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
27032798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
270441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27052798e883SHong Zhang       its--;
27062798e883SHong Zhang     }
27072798e883SHong Zhang 
27082798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27092798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27102798e883SHong Zhang     while (its--) {
2711ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27122798e883SHong Zhang 
27132798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27142798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2715efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27162798e883SHong Zhang 
2717ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27182798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2719ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27202798e883SHong Zhang 
27212798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2722efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27232798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27242798e883SHong Zhang 
2725ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27262798e883SHong Zhang 
2727c14dc6b6SHong Zhang       /* diagonal sweep */
272841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27292798e883SHong Zhang     }
27306bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27316bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27326bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27332798e883SHong Zhang   PetscFunctionReturn(0);
27342798e883SHong Zhang }
27352798e883SHong Zhang 
2736dfb205c3SBarry Smith #undef __FUNCT__
2737dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2738dfb205c3SBarry Smith /*@
2739dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2740dfb205c3SBarry Smith          CSR format the local rows.
2741dfb205c3SBarry Smith 
2742dfb205c3SBarry Smith    Collective on MPI_Comm
2743dfb205c3SBarry Smith 
2744dfb205c3SBarry Smith    Input Parameters:
2745dfb205c3SBarry Smith +  comm - MPI communicator
2746dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2747dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2748dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2749dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2750dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2751dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2752dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2753dfb205c3SBarry Smith .   i - row indices
2754dfb205c3SBarry Smith .   j - column indices
2755dfb205c3SBarry Smith -   a - matrix values
2756dfb205c3SBarry Smith 
2757dfb205c3SBarry Smith    Output Parameter:
2758dfb205c3SBarry Smith .   mat - the matrix
2759dfb205c3SBarry Smith 
2760dfb205c3SBarry Smith    Level: intermediate
2761dfb205c3SBarry Smith 
2762dfb205c3SBarry Smith    Notes:
2763dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2764dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2765dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2766dfb205c3SBarry Smith 
2767dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2768dfb205c3SBarry Smith 
2769dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2770dfb205c3SBarry Smith 
2771dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
277269b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2773dfb205c3SBarry Smith @*/
27747087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2775dfb205c3SBarry Smith {
2776dfb205c3SBarry Smith   PetscErrorCode ierr;
2777dfb205c3SBarry Smith 
2778dfb205c3SBarry Smith 
2779dfb205c3SBarry Smith   PetscFunctionBegin;
2780f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2781dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2782dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2783dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2784dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2785dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2786dfb205c3SBarry Smith   PetscFunctionReturn(0);
2787dfb205c3SBarry Smith }
2788dfb205c3SBarry Smith 
2789dfb205c3SBarry Smith 
2790dfb205c3SBarry Smith #undef __FUNCT__
2791dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2792dfb205c3SBarry Smith /*@C
2793dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2794dfb205c3SBarry Smith    (the default parallel PETSc format).
2795dfb205c3SBarry Smith 
2796dfb205c3SBarry Smith    Collective on MPI_Comm
2797dfb205c3SBarry Smith 
2798dfb205c3SBarry Smith    Input Parameters:
27991c4f3114SJed Brown +  B - the matrix
2800dfb205c3SBarry Smith .  bs - the block size
2801dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2802dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2803dfb205c3SBarry Smith -  v - optional values in the matrix
2804dfb205c3SBarry Smith 
2805dfb205c3SBarry Smith    Level: developer
2806dfb205c3SBarry Smith 
2807dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2808dfb205c3SBarry Smith 
280969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2810dfb205c3SBarry Smith @*/
28117087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2812dfb205c3SBarry Smith {
28134ac538c5SBarry Smith   PetscErrorCode ierr;
2814dfb205c3SBarry Smith 
2815dfb205c3SBarry Smith   PetscFunctionBegin;
28164ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2817dfb205c3SBarry Smith   PetscFunctionReturn(0);
2818dfb205c3SBarry Smith }
2819dfb205c3SBarry Smith 
2820de4b53ebSHong Zhang #undef __FUNCT__
282110c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
282210c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28234dcd73b1SHong Zhang {
28244dcd73b1SHong Zhang   PetscErrorCode ierr;
282510c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
282610c56fdeSHong Zhang   PetscInt       *indx;
282710c56fdeSHong Zhang   PetscScalar    *values;
2828dfb205c3SBarry Smith 
28294dcd73b1SHong Zhang   PetscFunctionBegin;
28304dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
283110c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
283210c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
283310c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
283410c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
28354dcd73b1SHong Zhang 
283610c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
283710c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
283810c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
283910c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
284010c56fdeSHong Zhang     }
284110c56fdeSHong Zhang     /* Check sum(n) = Nbs */
284210c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
284310c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
284410c56fdeSHong Zhang 
284510c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
284610c56fdeSHong Zhang     rstart -= mbs;
28474dcd73b1SHong Zhang 
28484dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
284910c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
2850e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
285110c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
28524dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
28534dcd73b1SHong Zhang       nnz = nnz/bs;
28544dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
28554dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
28564dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
28574dcd73b1SHong Zhang     }
2858e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
28594dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
28604dcd73b1SHong Zhang 
28614dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
286210c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
28634dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
28644dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
28654dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
28664dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
28674dcd73b1SHong Zhang   }
28684dcd73b1SHong Zhang 
286910c56fdeSHong Zhang   /* numeric phase */
28704dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
287110c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
28724dcd73b1SHong Zhang 
2873e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
28744dcd73b1SHong Zhang   for (i=0; i<m; i++) {
28754dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
28764dcd73b1SHong Zhang     Ii   = i + rstart;
287710c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
28784dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
28794dcd73b1SHong Zhang   }
2880e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
288110c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
288210c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28834dcd73b1SHong Zhang   PetscFunctionReturn(0);
28844dcd73b1SHong Zhang }
2885