1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 23*6214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 24*6214f412SHong Zhang #endif 25a30f8f8cSSatish Balay 264a2ae208SSatish Balay #undef __FUNCT__ 274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 287087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 29a30f8f8cSSatish Balay { 30f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 31dfbe8321SBarry Smith PetscErrorCode ierr; 32a30f8f8cSSatish Balay 33a30f8f8cSSatish Balay PetscFunctionBegin; 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 35a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 36a30f8f8cSSatish Balay PetscFunctionReturn(0); 37a30f8f8cSSatish Balay } 38a30f8f8cSSatish Balay 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 53a30f8f8cSSatish Balay { \ 54a30f8f8cSSatish Balay \ 55a30f8f8cSSatish Balay brow = row/bs; \ 56a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 57a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 58a30f8f8cSSatish Balay bcol = col/bs; \ 59a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 60a30f8f8cSSatish Balay low = 0; high = nrow; \ 61a30f8f8cSSatish Balay while (high-low > 3) { \ 62a30f8f8cSSatish Balay t = (low+high)/2; \ 63a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 64a30f8f8cSSatish Balay else low = t; \ 65a30f8f8cSSatish Balay } \ 66a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 67a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 68a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 69a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 70a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 71a30f8f8cSSatish Balay else *bap = value; \ 72a30f8f8cSSatish Balay goto a_noinsert; \ 73a30f8f8cSSatish Balay } \ 74a30f8f8cSSatish Balay } \ 75a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 76e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 77fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 78a30f8f8cSSatish Balay N = nrow++ - 1; \ 79a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 80a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 81a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 82a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 83a30f8f8cSSatish Balay } \ 84a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 85a30f8f8cSSatish Balay rp[_i] = bcol; \ 86a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 87e56f5c9eSBarry Smith A->nonzerostate++;\ 88a30f8f8cSSatish Balay a_noinsert:; \ 89a30f8f8cSSatish Balay ailen[brow] = nrow; \ 90a30f8f8cSSatish Balay } 91e5e170daSBarry Smith 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay brow = row/bs; \ 95a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 96a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 97a30f8f8cSSatish Balay bcol = col/bs; \ 98a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 99a30f8f8cSSatish Balay low = 0; high = nrow; \ 100a30f8f8cSSatish Balay while (high-low > 3) { \ 101a30f8f8cSSatish Balay t = (low+high)/2; \ 102a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 103a30f8f8cSSatish Balay else low = t; \ 104a30f8f8cSSatish Balay } \ 105a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 106a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 107a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 108a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 109a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 110a30f8f8cSSatish Balay else *bap = value; \ 111a30f8f8cSSatish Balay goto b_noinsert; \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 115e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 116fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 117a30f8f8cSSatish Balay N = nrow++ - 1; \ 118a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 119a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 120a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 122a30f8f8cSSatish Balay } \ 123a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 124a30f8f8cSSatish Balay rp[_i] = bcol; \ 125a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 126e56f5c9eSBarry Smith B->nonzerostate++;\ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa =a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba =b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 1630298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1640298fd71SBarry Smith MatScalar *v_loc = NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (!baij->donotstash) { 16859ffdab8SBarry Smith if (n > baij->n_loc) { 16959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 171785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 172785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 17326fbe8dcSKarl Rupp 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18901b2bd88SHong Zhang if (a->ignore_ltriangular) { 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19126fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19201b2bd88SHong Zhang } 193a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 194a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 195a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 196a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 197db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 198db4deed7SKarl Rupp else value = v[i+j*m]; 199a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 200a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 201a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 203cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 204a30f8f8cSSatish Balay #endif 205a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 206a30f8f8cSSatish Balay if (mat->was_assembled) { 207a30f8f8cSSatish Balay if (!baij->colmap) { 208ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 209a30f8f8cSSatish Balay } 210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 211a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21271730473SSatish Balay col = col - 1; 213a30f8f8cSSatish Balay #else 21471730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 215a30f8f8cSSatish Balay #endif 216a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 217ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 218a30f8f8cSSatish Balay col = in[j]; 219a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 220a30f8f8cSSatish Balay B = baij->B; 221a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 222a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 223a30f8f8cSSatish Balay ba = b->a; 22471730473SSatish Balay } else col += in[j]%bs; 225a30f8f8cSSatish Balay } else col = in[j]; 226db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 227db4deed7SKarl Rupp else value = v[i+j*m]; 228a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 229a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } else { /* off processor entry */ 2334cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 234a30f8f8cSSatish Balay if (!baij->donotstash) { 2355080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++) { 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray =baij->barray; 261ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if (!barray) { 269785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 281e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286f3f98c53SJed Brown if (im[i] > in[j]) { 287f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 31226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 314cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3150880e062SHong Zhang #endif 3160880e062SHong Zhang else { 3170880e062SHong Zhang if (mat->was_assembled) { 3180880e062SHong Zhang if (!baij->colmap) { 319ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3200880e062SHong Zhang } 3210880e062SHong Zhang 3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3241302d50aSBarry Smith { PetscInt data; 3250880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 326e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang } 3280880e062SHong Zhang #else 329e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang #endif 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3330880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3340880e062SHong Zhang col = (col - 1)/bs; 3350880e062SHong Zhang #else 3360880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3370880e062SHong Zhang #endif 3380880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 339ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3400880e062SHong Zhang col = in[j]; 3410880e062SHong Zhang } 34226fbe8dcSKarl Rupp } else col = in[j]; 343e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3440880e062SHong Zhang } 3450880e062SHong Zhang } 3460880e062SHong Zhang } else { 3474cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3480880e062SHong Zhang if (!baij->donotstash) { 3490880e062SHong Zhang if (roworiented) { 3500880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3510880e062SHong Zhang } else { 3520880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang PetscFunctionReturn(0); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 3604a2ae208SSatish Balay #undef __FUNCT__ 3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 363a30f8f8cSSatish Balay { 364f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3656849ba73SBarry Smith PetscErrorCode ierr; 366d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 367d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 368a30f8f8cSSatish Balay 369a30f8f8cSSatish Balay PetscFunctionBegin; 370a30f8f8cSSatish Balay for (i=0; i<m; i++) { 371e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 372e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 373a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 374a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 375a30f8f8cSSatish Balay for (j=0; j<n; j++) { 376e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 377e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 378a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 379a30f8f8cSSatish Balay col = idxn[j] - bscstart; 380c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } else { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 387a30f8f8cSSatish Balay data--; 388a30f8f8cSSatish Balay #else 389a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 392a30f8f8cSSatish Balay else { 393a30f8f8cSSatish Balay col = data + idxn[j]%bs; 394e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay PetscFunctionReturn(0); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 4034a2ae208SSatish Balay #undef __FUNCT__ 4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 406a30f8f8cSSatish Balay { 407a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 408dfbe8321SBarry Smith PetscErrorCode ierr; 409a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 410a30f8f8cSSatish Balay 411a30f8f8cSSatish Balay PetscFunctionBegin; 412a30f8f8cSSatish Balay if (baij->size == 1) { 413a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 416785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 418a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 419a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 421ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4228f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 423a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4240b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4250b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4260b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4270b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 428899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 429d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4300b8dc8d2SHong Zhang MatScalar *v; 4310b8dc8d2SHong Zhang 432dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 433d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 467ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 47274ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 473f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 474a30f8f8cSSatish Balay } 475a30f8f8cSSatish Balay PetscFunctionReturn(0); 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay 4784a2ae208SSatish Balay #undef __FUNCT__ 4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 481a30f8f8cSSatish Balay { 482a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 483dfbe8321SBarry Smith PetscErrorCode ierr; 4841302d50aSBarry Smith PetscInt nstash,reallocs; 485a30f8f8cSSatish Balay InsertMode addv; 486a30f8f8cSSatish Balay 487a30f8f8cSSatish Balay PetscFunctionBegin; 48826fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 489a30f8f8cSSatish Balay 490a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 491ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 492ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 493a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 494a30f8f8cSSatish Balay 495d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4961e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 497a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4981e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 499a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5001e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 501a30f8f8cSSatish Balay PetscFunctionReturn(0); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay 5044a2ae208SSatish Balay #undef __FUNCT__ 5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 507a30f8f8cSSatish Balay { 508a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 509a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5106849ba73SBarry Smith PetscErrorCode ierr; 51113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 512e44c0bd4SBarry Smith PetscInt *row,*col; 513ace3abfcSBarry Smith PetscBool other_disassembled; 51413f74950SBarry Smith PetscMPIInt n; 515ace3abfcSBarry Smith PetscBool r1,r2,r3; 516a30f8f8cSSatish Balay MatScalar *val; 517a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 518a30f8f8cSSatish Balay 51991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 520a30f8f8cSSatish Balay PetscFunctionBegin; 5214cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 522a30f8f8cSSatish Balay while (1) { 523a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 524a30f8f8cSSatish Balay if (!flg) break; 525a30f8f8cSSatish Balay 526a30f8f8cSSatish Balay for (i=0; i<n;) { 527a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52926fbe8dcSKarl Rupp if (row[j] != rstart) break; 53026fbe8dcSKarl Rupp } 531a30f8f8cSSatish Balay if (j < n) ncols = j-i; 532a30f8f8cSSatish Balay else ncols = n-i; 533a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 534dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 535a30f8f8cSSatish Balay i = j; 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 539a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 540a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 541a30f8f8cSSatish Balay restore the original flags */ 542a30f8f8cSSatish Balay r1 = baij->roworiented; 543a30f8f8cSSatish Balay r2 = a->roworiented; 54491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54526fbe8dcSKarl Rupp 546a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 547a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54826fbe8dcSKarl Rupp 54991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 550a30f8f8cSSatish Balay while (1) { 551a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 552a30f8f8cSSatish Balay if (!flg) break; 553a30f8f8cSSatish Balay 554a30f8f8cSSatish Balay for (i=0; i<n;) { 555a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55726fbe8dcSKarl Rupp if (row[j] != rstart) break; 55826fbe8dcSKarl Rupp } 559a30f8f8cSSatish Balay if (j < n) ncols = j-i; 560a30f8f8cSSatish Balay else ncols = n-i; 561dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 562a30f8f8cSSatish Balay i = j; 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56626fbe8dcSKarl Rupp 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56926fbe8dcSKarl Rupp 57091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 577a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 578a30f8f8cSSatish Balay /* 579a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 580a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 581a30f8f8cSSatish Balay */ 582a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 583ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 584a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 585ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 591a30f8f8cSSatish Balay } 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 59574ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59626fbe8dcSKarl Rupp 597a30f8f8cSSatish Balay baij->rowvalues = 0; 5984f9cfa9eSBarry Smith 5994f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 6004f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 601e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 60209e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 603e56f5c9eSBarry Smith } 604a30f8f8cSSatish Balay PetscFunctionReturn(0); 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay 6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6099804daf3SBarry Smith #include <petscdraw.h> 6104a2ae208SSatish Balay #undef __FUNCT__ 6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 613a30f8f8cSSatish Balay { 614a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 615dfbe8321SBarry Smith PetscErrorCode ierr; 616d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6177da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 618ace3abfcSBarry Smith PetscBool iascii,isdraw; 619b0a32e0cSBarry Smith PetscViewer sviewer; 620f3ef73ceSBarry Smith PetscViewerFormat format; 621a30f8f8cSSatish Balay 622a30f8f8cSSatish Balay PetscFunctionBegin; 623251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 624251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62532077d6dSBarry Smith if (iascii) { 626b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 627456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 628a30f8f8cSSatish Balay MatInfo info; 629ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6317b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6327b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 633a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 634e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 635a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 636e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 637b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6387b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 640a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 641a30f8f8cSSatish Balay PetscFunctionReturn(0); 642fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 64377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 644a30f8f8cSSatish Balay PetscFunctionReturn(0); 645c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 646c1490034SHong Zhang PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650a30f8f8cSSatish Balay if (isdraw) { 651b0a32e0cSBarry Smith PetscDraw draw; 652ace3abfcSBarry Smith PetscBool isnull; 653b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 654b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay 6577da1fb6eSBarry Smith { 658a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 659a30f8f8cSSatish Balay Mat A; 66065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 66165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 662d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 663a30f8f8cSSatish Balay MatScalar *a; 664a30f8f8cSSatish Balay 665f204ca49SKris Buschelman /* Should this be the same type as mat? */ 666ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 667a30f8f8cSSatish Balay if (!rank) { 668f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 669a30f8f8cSSatish Balay } else { 670f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 671a30f8f8cSSatish Balay } 672f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6730298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6742b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 676a30f8f8cSSatish Balay 677a30f8f8cSSatish Balay /* copy over the A part */ 67865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 679a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 680785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 683e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 685a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 686e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 687a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 688dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68926fbe8dcSKarl Rupp col++; 69026fbe8dcSKarl Rupp a += bs; 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay /* copy over the B part */ 69565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 697a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 698e9f7bc9eSHong Zhang 699e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 70026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 701a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 702a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 703a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 704799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 70526fbe8dcSKarl Rupp col++; 70626fbe8dcSKarl Rupp a += bs; 707a30f8f8cSSatish Balay } 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 711a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 713a30f8f8cSSatish Balay /* 714a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 715b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 716a30f8f8cSSatish Balay */ 717b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71865d70643SHong Zhang if (!rank) { 7197da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 720a30f8f8cSSatish Balay } 721b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7226bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay PetscFunctionReturn(0); 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay 7274a2ae208SSatish Balay #undef __FUNCT__ 7284a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 729dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 730a30f8f8cSSatish Balay { 731dfbe8321SBarry Smith PetscErrorCode ierr; 732ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay PetscFunctionBegin; 735251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 736251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 737251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 738251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73932077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 740a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 741a30f8f8cSSatish Balay } 742a30f8f8cSSatish Balay PetscFunctionReturn(0); 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay 7454a2ae208SSatish Balay #undef __FUNCT__ 7464a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 747dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 748a30f8f8cSSatish Balay { 749a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 750dfbe8321SBarry Smith PetscErrorCode ierr; 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay PetscFunctionBegin; 753a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 754d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 755a30f8f8cSSatish Balay #endif 756a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7586bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7596bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 760a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7616bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 762a30f8f8cSSatish Balay #else 76305b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 764a30f8f8cSSatish Balay #endif 76505b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7676bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7745755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77605b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7776bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7786bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7796bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 780ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78105b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 782a30f8f8cSSatish Balay #endif 78359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 785899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 786bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 787901853e0SKris Buschelman 788dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 789bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 790bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 791bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 792bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 793bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 794*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 795*6214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 796*6214f412SHong Zhang #endif 797a30f8f8cSSatish Balay PetscFunctionReturn(0); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay 8004a2ae208SSatish Balay #undef __FUNCT__ 801547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 802547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 803547795f9SHong Zhang { 804547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 805547795f9SHong Zhang PetscErrorCode ierr; 806547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 807547795f9SHong Zhang PetscScalar *x,*from; 808547795f9SHong Zhang 809547795f9SHong Zhang PetscFunctionBegin; 810547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 811e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 812547795f9SHong Zhang 813547795f9SHong Zhang /* diagonal part */ 814547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 815547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* subdiagonal part */ 818547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang /* copy x into the vec slvec0 */ 821547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 823547795f9SHong Zhang 824547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 827547795f9SHong Zhang 828547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 829547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 830547795f9SHong Zhang /* supperdiagonal part */ 831547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 832547795f9SHong Zhang PetscFunctionReturn(0); 833547795f9SHong Zhang } 834547795f9SHong Zhang 835547795f9SHong Zhang #undef __FUNCT__ 836a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 837dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 838a9d4b620SHong Zhang { 839a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 840dfbe8321SBarry Smith PetscErrorCode ierr; 841d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 842fa22f6d0SBarry Smith PetscScalar *x,*from; 843a9d4b620SHong Zhang 844a9d4b620SHong Zhang PetscFunctionBegin; 845a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 846e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 847a9d4b620SHong Zhang 848a9d4b620SHong Zhang /* diagonal part */ 849a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 850fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 851a9d4b620SHong Zhang 852a9d4b620SHong Zhang /* subdiagonal part */ 853a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 854fc165ae2SBarry Smith 855a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8561ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8571ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 858a9d4b620SHong Zhang 859fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 860fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8611ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 862fc165ae2SBarry Smith 863fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 864ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 865a9d4b620SHong Zhang /* supperdiagonal part */ 866a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 867a9d4b620SHong Zhang PetscFunctionReturn(0); 868a9d4b620SHong Zhang } 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang #undef __FUNCT__ 87140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 872dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 873a30f8f8cSSatish Balay { 874a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 875dfbe8321SBarry Smith PetscErrorCode ierr; 8761302d50aSBarry Smith PetscInt nt; 877a30f8f8cSSatish Balay 878a30f8f8cSSatish Balay PetscFunctionBegin; 879a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 880e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 881e7e72b3dSBarry Smith 882a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 883e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88465d70643SHong Zhang 885ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 886b941877fSHong Zhang /* do diagonal part */ 887b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 888b941877fSHong Zhang /* do supperdiagonal part */ 889ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 890b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 891b941877fSHong Zhang /* do subdiagonal part */ 892b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 893ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 894ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 895a30f8f8cSSatish Balay PetscFunctionReturn(0); 896a30f8f8cSSatish Balay } 897a30f8f8cSSatish Balay 8984a2ae208SSatish Balay #undef __FUNCT__ 8994a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 901a30f8f8cSSatish Balay { 902de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 903dfbe8321SBarry Smith PetscErrorCode ierr; 904d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 905a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 906a9d4b620SHong Zhang 907a9d4b620SHong Zhang PetscFunctionBegin; 908a9d4b620SHong Zhang /* 909ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 9100ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 911a9d4b620SHong Zhang */ 912a9d4b620SHong Zhang /* diagonal part */ 913a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9142dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 915a9d4b620SHong Zhang 916a9d4b620SHong Zhang /* subdiagonal part */ 917a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 918a9d4b620SHong Zhang 919a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9201ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 922a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9231ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 924a9d4b620SHong Zhang 925ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9261ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 927ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 928a9d4b620SHong Zhang 929a9d4b620SHong Zhang /* supperdiagonal part */ 930a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 931a9d4b620SHong Zhang PetscFunctionReturn(0); 932a9d4b620SHong Zhang } 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang #undef __FUNCT__ 935a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 937a9d4b620SHong Zhang { 938a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay PetscFunctionBegin; 942ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 943b941877fSHong Zhang /* do diagonal part */ 944b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 945b941877fSHong Zhang /* do supperdiagonal part */ 946ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 947de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 948de8b6608SHong Zhang 949b941877fSHong Zhang /* do subdiagonal part */ 950a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 951ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 952ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 953a30f8f8cSSatish Balay PetscFunctionReturn(0); 954a30f8f8cSSatish Balay } 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay /* 957a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 958a30f8f8cSSatish Balay diagonal block 959a30f8f8cSSatish Balay */ 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 963a30f8f8cSSatish Balay { 964a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 969a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 970a30f8f8cSSatish Balay PetscFunctionReturn(0); 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay 9734a2ae208SSatish Balay #undef __FUNCT__ 9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 976a30f8f8cSSatish Balay { 977a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 978dfbe8321SBarry Smith PetscErrorCode ierr; 979a30f8f8cSSatish Balay 980a30f8f8cSSatish Balay PetscFunctionBegin; 981f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 982f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 983a30f8f8cSSatish Balay PetscFunctionReturn(0); 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 989a30f8f8cSSatish Balay { 990d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 991d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 992d0d4cfc2SHong Zhang PetscErrorCode ierr; 993d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 994d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 995899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 996d0d4cfc2SHong Zhang 997a30f8f8cSSatish Balay PetscFunctionBegin; 998e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 999d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1000d0d4cfc2SHong Zhang 1001d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1002d0d4cfc2SHong Zhang /* 1003d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1004d0d4cfc2SHong Zhang */ 1005d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1006d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1007d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1008d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1009d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 101026fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1011d0d4cfc2SHong Zhang } 1012dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1013d0d4cfc2SHong Zhang } 1014d0d4cfc2SHong Zhang 1015e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1016d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1019d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1020d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1021d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1023d0d4cfc2SHong Zhang nztot = nzA + nzB; 1024d0d4cfc2SHong Zhang 1025d0d4cfc2SHong Zhang cmap = mat->garray; 1026d0d4cfc2SHong Zhang if (v || idx) { 1027d0d4cfc2SHong Zhang if (nztot) { 1028d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1029d0d4cfc2SHong Zhang PetscInt imark = -1; 1030d0d4cfc2SHong Zhang if (v) { 1031d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1032d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1033d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1034d0d4cfc2SHong Zhang else break; 1035d0d4cfc2SHong Zhang } 1036d0d4cfc2SHong Zhang imark = i; 1037d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1038d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang if (idx) { 1041d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1042d0d4cfc2SHong Zhang if (imark > -1) { 1043d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1044d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang } else { 1047d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 104826fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1049d0d4cfc2SHong Zhang else break; 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang imark = i; 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1054d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang } else { 1057d0d4cfc2SHong Zhang if (idx) *idx = 0; 1058d0d4cfc2SHong Zhang if (v) *v = 0; 1059d0d4cfc2SHong Zhang } 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang *nz = nztot; 1062d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1063d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1064a30f8f8cSSatish Balay PetscFunctionReturn(0); 1065a30f8f8cSSatish Balay } 1066a30f8f8cSSatish Balay 10674a2ae208SSatish Balay #undef __FUNCT__ 10684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10691302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1070a30f8f8cSSatish Balay { 1071a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1072a30f8f8cSSatish Balay 1073a30f8f8cSSatish Balay PetscFunctionBegin; 1074e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1075a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1076a30f8f8cSSatish Balay PetscFunctionReturn(0); 1077a30f8f8cSSatish Balay } 1078a30f8f8cSSatish Balay 10794a2ae208SSatish Balay #undef __FUNCT__ 1080d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1081d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1082d0d4cfc2SHong Zhang { 1083d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1084d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1085d0d4cfc2SHong Zhang 1086d0d4cfc2SHong Zhang PetscFunctionBegin; 1087d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1088d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1089d0d4cfc2SHong Zhang } 1090d0d4cfc2SHong Zhang #undef __FUNCT__ 1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1092d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1093d0d4cfc2SHong Zhang { 1094d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1095d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1096d0d4cfc2SHong Zhang 1097d0d4cfc2SHong Zhang PetscFunctionBegin; 1098d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1099d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang 1102d0d4cfc2SHong Zhang #undef __FUNCT__ 110399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110599cafbc1SBarry Smith { 110699cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110799cafbc1SBarry Smith PetscErrorCode ierr; 110899cafbc1SBarry Smith 110999cafbc1SBarry Smith PetscFunctionBegin; 111099cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111199cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111299cafbc1SBarry Smith PetscFunctionReturn(0); 111399cafbc1SBarry Smith } 111499cafbc1SBarry Smith 111599cafbc1SBarry Smith #undef __FUNCT__ 111699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111899cafbc1SBarry Smith { 111999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112099cafbc1SBarry Smith PetscErrorCode ierr; 112199cafbc1SBarry Smith 112299cafbc1SBarry Smith PetscFunctionBegin; 112399cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112499cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112599cafbc1SBarry Smith PetscFunctionReturn(0); 112699cafbc1SBarry Smith } 112799cafbc1SBarry Smith 112899cafbc1SBarry Smith #undef __FUNCT__ 11294a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1130dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1131a30f8f8cSSatish Balay { 1132a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1133dfbe8321SBarry Smith PetscErrorCode ierr; 1134a30f8f8cSSatish Balay 1135a30f8f8cSSatish Balay PetscFunctionBegin; 1136a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay PetscFunctionReturn(0); 1139a30f8f8cSSatish Balay } 1140a30f8f8cSSatish Balay 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1143dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1144a30f8f8cSSatish Balay { 1145a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1146a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1147dfbe8321SBarry Smith PetscErrorCode ierr; 1148a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1149a30f8f8cSSatish Balay 1150a30f8f8cSSatish Balay PetscFunctionBegin; 1151d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 115226fbe8dcSKarl Rupp 1153a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 115426fbe8dcSKarl Rupp 1155a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1156a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 115726fbe8dcSKarl Rupp 1158a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 115926fbe8dcSKarl Rupp 1160a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1161a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1162a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1163a30f8f8cSSatish Balay info->nz_used = isend[0]; 1164a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1165a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1166a30f8f8cSSatish Balay info->memory = isend[3]; 1167a30f8f8cSSatish Balay info->mallocs = isend[4]; 1168a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1169ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117026fbe8dcSKarl Rupp 1171a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1172a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1173a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1174a30f8f8cSSatish Balay info->memory = irecv[3]; 1175a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1176a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1177ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117826fbe8dcSKarl Rupp 1179a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1180a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1181a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1182a30f8f8cSSatish Balay info->memory = irecv[3]; 1183a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1184f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1185a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1186a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1187a30f8f8cSSatish Balay info->factor_mallocs = 0; 1188a30f8f8cSSatish Balay PetscFunctionReturn(0); 1189a30f8f8cSSatish Balay } 1190a30f8f8cSSatish Balay 11914a2ae208SSatish Balay #undef __FUNCT__ 11924a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1193ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1194a30f8f8cSSatish Balay { 1195a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1196d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1197dfbe8321SBarry Smith PetscErrorCode ierr; 1198a30f8f8cSSatish Balay 1199a30f8f8cSSatish Balay PetscFunctionBegin; 1200e98b92d7SKris Buschelman switch (op) { 1201512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1202e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1204a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1205e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12064e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12074e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1208e98b92d7SKris Buschelman break; 1209e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12104e0d8c25SBarry Smith a->roworiented = flg; 121126fbe8dcSKarl Rupp 12124e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12134e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1214e98b92d7SKris Buschelman break; 12154e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1216290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1217e98b92d7SKris Buschelman break; 1218e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12194e0d8c25SBarry Smith a->donotstash = flg; 1220e98b92d7SKris Buschelman break; 1221e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12224e0d8c25SBarry Smith a->ht_flag = flg; 1223e98b92d7SKris Buschelman break; 12249a4540c5SBarry Smith case MAT_HERMITIAN: 1225e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1226eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 122726fbe8dcSKarl Rupp 1228547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1229eeffb40dSHong Zhang break; 1230ffa07934SHong Zhang case MAT_SPD: 1231ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1232ffa07934SHong Zhang A->spd = flg; 1233ffa07934SHong Zhang if (flg) { 1234ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1235ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1236ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1237ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1238ffa07934SHong Zhang } 1239ffa07934SHong Zhang break; 124077e54ba9SKris Buschelman case MAT_SYMMETRIC: 1241eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1242eeffb40dSHong Zhang break; 124377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1244eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1245eeffb40dSHong Zhang break; 12469a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1247e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1248290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124977e54ba9SKris Buschelman break; 1250d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12514e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1252d0d4cfc2SHong Zhang break; 1253d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12544e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1255d0d4cfc2SHong Zhang break; 1256d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12574e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1258d0d4cfc2SHong Zhang break; 1259e98b92d7SKris Buschelman default: 1260e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1261a30f8f8cSSatish Balay } 1262a30f8f8cSSatish Balay PetscFunctionReturn(0); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 12654a2ae208SSatish Balay #undef __FUNCT__ 12668115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1267fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1268a30f8f8cSSatish Balay { 1269dfbe8321SBarry Smith PetscErrorCode ierr; 12706e111a19SKarl Rupp 1271a30f8f8cSSatish Balay PetscFunctionBegin; 1272815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1273999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1274fc4dec0aSBarry Smith } 12758115998fSBarry Smith PetscFunctionReturn(0); 1276a30f8f8cSSatish Balay } 1277a30f8f8cSSatish Balay 12784a2ae208SSatish Balay #undef __FUNCT__ 12794a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1280dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1281a30f8f8cSSatish Balay { 1282a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1283a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1284dfbe8321SBarry Smith PetscErrorCode ierr; 12855e90f9d9SHong Zhang PetscInt nv,m,n; 1286ace3abfcSBarry Smith PetscBool flg; 1287a30f8f8cSSatish Balay 1288a30f8f8cSSatish Balay PetscFunctionBegin; 1289a30f8f8cSSatish Balay if (ll != rr) { 1290b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1291e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1292a30f8f8cSSatish Balay } 1293b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1294b3bf805bSHong Zhang 12955e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1296e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1297b3bf805bSHong Zhang 12985e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1299e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13005e90f9d9SHong Zhang 1301ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13025e90f9d9SHong Zhang 13035e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 13040298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 13055e90f9d9SHong Zhang 13065e90f9d9SHong Zhang /* scale the diagonal part */ 1307a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay 13095e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1310ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13110298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1312a30f8f8cSSatish Balay PetscFunctionReturn(0); 1313a30f8f8cSSatish Balay } 1314a30f8f8cSSatish Balay 13154a2ae208SSatish Balay #undef __FUNCT__ 13164a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1317dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1318a30f8f8cSSatish Balay { 1319f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1320dfbe8321SBarry Smith PetscErrorCode ierr; 1321a30f8f8cSSatish Balay 1322a30f8f8cSSatish Balay PetscFunctionBegin; 1323a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1324a30f8f8cSSatish Balay PetscFunctionReturn(0); 1325a30f8f8cSSatish Balay } 1326a30f8f8cSSatish Balay 13276849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1328a30f8f8cSSatish Balay 13294a2ae208SSatish Balay #undef __FUNCT__ 13304a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1331ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1332a30f8f8cSSatish Balay { 1333a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1334a30f8f8cSSatish Balay Mat a,b,c,d; 1335ace3abfcSBarry Smith PetscBool flg; 1336dfbe8321SBarry Smith PetscErrorCode ierr; 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay PetscFunctionBegin; 1339a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1340a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1341a30f8f8cSSatish Balay 1342a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1343abc0a331SBarry Smith if (flg) { 1344a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1345a30f8f8cSSatish Balay } 1346ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1347a30f8f8cSSatish Balay PetscFunctionReturn(0); 1348a30f8f8cSSatish Balay } 1349a30f8f8cSSatish Balay 13504a2ae208SSatish Balay #undef __FUNCT__ 13513c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13523c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13533c896bc6SHong Zhang { 13543c896bc6SHong Zhang PetscErrorCode ierr; 13553c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13563c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13573c896bc6SHong Zhang 13583c896bc6SHong Zhang PetscFunctionBegin; 13593c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13603c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1361d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13623c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1363d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13643c896bc6SHong Zhang } else { 13653c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13663c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13673c896bc6SHong Zhang } 13683c896bc6SHong Zhang PetscFunctionReturn(0); 13693c896bc6SHong Zhang } 13703c896bc6SHong Zhang 13713c896bc6SHong Zhang #undef __FUNCT__ 13724994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13734994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1374273d9f13SBarry Smith { 1375dfbe8321SBarry Smith PetscErrorCode ierr; 1376273d9f13SBarry Smith 1377273d9f13SBarry Smith PetscFunctionBegin; 1378535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1379273d9f13SBarry Smith PetscFunctionReturn(0); 1380273d9f13SBarry Smith } 1381a5e6ed63SBarry Smith 13824fe895cdSHong Zhang #undef __FUNCT__ 13834fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13844fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13854fe895cdSHong Zhang { 13864fe895cdSHong Zhang PetscErrorCode ierr; 13874fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13884fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13894fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13904fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13914fe895cdSHong Zhang 13924fe895cdSHong Zhang PetscFunctionBegin; 13934fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13944fe895cdSHong Zhang PetscScalar alpha = a; 13954fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13964fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1397c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 13988b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13994fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 14004fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1401c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 14028b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1403a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1404ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1405ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1406ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1407ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 14084fe895cdSHong Zhang } else { 14094de5dceeSHong Zhang Mat B; 14104de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 14114de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1412d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14134de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 14144de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 14154de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 14164de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 14174de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 14184de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 14194de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 14204de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 14214de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 14224de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 14234de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 14244de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 14254de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 14264de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 14274de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1428d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14294de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 14304fe895cdSHong Zhang } 14314fe895cdSHong Zhang PetscFunctionReturn(0); 14324fe895cdSHong Zhang } 14334fe895cdSHong Zhang 1434a5e6ed63SBarry Smith #undef __FUNCT__ 1435a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14361302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1437a5e6ed63SBarry Smith { 14386849ba73SBarry Smith PetscErrorCode ierr; 14391302d50aSBarry Smith PetscInt i; 1440ace3abfcSBarry Smith PetscBool flg; 1441a5e6ed63SBarry Smith 14426849ba73SBarry Smith PetscFunctionBegin; 14434dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1444a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1445a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 14464dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 14474dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1448a5e6ed63SBarry Smith } 14494dcd73b1SHong Zhang } 1450a5e6ed63SBarry Smith PetscFunctionReturn(0); 1451a5e6ed63SBarry Smith } 1452a5e6ed63SBarry Smith 1453a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 14543964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1455a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1456a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1457a9d4b620SHong Zhang MatMult_MPISBAIJ, 145897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1459431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1460431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 146497304618SKris Buschelman /* 10*/ 0, 1465a30f8f8cSSatish Balay 0, 1466a30f8f8cSSatish Balay 0, 146741f059aeSBarry Smith MatSOR_MPISBAIJ, 1468a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 146997304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1470a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1471a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1472a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1473a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 147497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1475a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1476a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1477a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1478d519adbfSMatthew Knepley /* 24*/ 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 14834994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1484b5df2d14SHong Zhang 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 1488d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1494a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1495d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1496a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14973c896bc6SHong Zhang MatCopy_MPISBAIJ, 1498d519adbfSMatthew Knepley /* 44*/ 0, 1499a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay 0, 1503f73d5cc4SBarry Smith /* 49*/ 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508d519adbfSMatthew Knepley /* 54*/ 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1513d519adbfSMatthew Knepley /* 59*/ 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516357abbc8SBarry Smith 0, 151724d5174aSHong Zhang 0, 1518d519adbfSMatthew Knepley /* 64*/ 0, 151924d5174aSHong Zhang 0, 152024d5174aSHong Zhang 0, 152124d5174aSHong Zhang 0, 152224d5174aSHong Zhang 0, 1523d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 152424d5174aSHong Zhang 0, 152597304618SKris Buschelman 0, 152697304618SKris Buschelman 0, 152797304618SKris Buschelman 0, 1528d519adbfSMatthew Knepley /* 74*/ 0, 152997304618SKris Buschelman 0, 153097304618SKris Buschelman 0, 153197304618SKris Buschelman 0, 153297304618SKris Buschelman 0, 1533d519adbfSMatthew Knepley /* 79*/ 0, 153497304618SKris Buschelman 0, 153597304618SKris Buschelman 0, 153697304618SKris Buschelman 0, 15375bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1538d519adbfSMatthew Knepley /* 84*/ 0, 1539865e5f61SKris Buschelman 0, 1540865e5f61SKris Buschelman 0, 1541865e5f61SKris Buschelman 0, 1542865e5f61SKris Buschelman 0, 1543d519adbfSMatthew Knepley /* 89*/ 0, 1544865e5f61SKris Buschelman 0, 1545865e5f61SKris Buschelman 0, 1546865e5f61SKris Buschelman 0, 1547865e5f61SKris Buschelman 0, 1548d519adbfSMatthew Knepley /* 94*/ 0, 1549865e5f61SKris Buschelman 0, 1550865e5f61SKris Buschelman 0, 155199cafbc1SBarry Smith 0, 155299cafbc1SBarry Smith 0, 1553d519adbfSMatthew Knepley /* 99*/ 0, 155499cafbc1SBarry Smith 0, 155599cafbc1SBarry Smith 0, 155699cafbc1SBarry Smith 0, 155799cafbc1SBarry Smith 0, 1558d519adbfSMatthew Knepley /*104*/ 0, 155999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1560d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1561d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 156295936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 156395936485SShri Abhyankar /*109*/ 0, 156495936485SShri Abhyankar 0, 156595936485SShri Abhyankar 0, 156695936485SShri Abhyankar 0, 156795936485SShri Abhyankar 0, 156895936485SShri Abhyankar /*114*/ 0, 156995936485SShri Abhyankar 0, 157095936485SShri Abhyankar 0, 157195936485SShri Abhyankar 0, 157295936485SShri Abhyankar 0, 157395936485SShri Abhyankar /*119*/ 0, 157495936485SShri Abhyankar 0, 157595936485SShri Abhyankar 0, 15763964eb88SJed Brown 0, 15773964eb88SJed Brown 0, 15783964eb88SJed Brown /*124*/ 0, 15793964eb88SJed Brown 0, 15803964eb88SJed Brown 0, 15813964eb88SJed Brown 0, 15823964eb88SJed Brown 0, 15833964eb88SJed Brown /*129*/ 0, 15843964eb88SJed Brown 0, 15853964eb88SJed Brown 0, 15863964eb88SJed Brown 0, 15873964eb88SJed Brown 0, 15883964eb88SJed Brown /*134*/ 0, 15893964eb88SJed Brown 0, 15903964eb88SJed Brown 0, 15913964eb88SJed Brown 0, 15923964eb88SJed Brown 0, 15933964eb88SJed Brown /*139*/ 0, 1594f9426fe0SMark Adams 0, 159559f5e6ceSHong Zhang 0, 159659f5e6ceSHong Zhang 0, 159759f5e6ceSHong Zhang 0, 159859f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 159999cafbc1SBarry Smith }; 1600a30f8f8cSSatish Balay 16014a2ae208SSatish Balay #undef __FUNCT__ 16024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 160311bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1604a30f8f8cSSatish Balay { 1605a30f8f8cSSatish Balay PetscFunctionBegin; 1606a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1607a30f8f8cSSatish Balay PetscFunctionReturn(0); 1608a30f8f8cSSatish Balay } 1609a30f8f8cSSatish Balay 16104a2ae208SSatish Balay #undef __FUNCT__ 1611a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1612b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1613a23d5eceSKris Buschelman { 1614a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1615dfbe8321SBarry Smith PetscErrorCode ierr; 1616535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1617a23d5eceSKris Buschelman 1618a23d5eceSKris Buschelman PetscFunctionBegin; 161933d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 162026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 162126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1622e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1623899cda47SBarry Smith 1624a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1625d0f46423SBarry Smith mbs = B->rmap->n/bs; 1626d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1627c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1628a23d5eceSKris Buschelman 1629d0f46423SBarry Smith B->rmap->bs = bs; 1630a23d5eceSKris Buschelman b->bs2 = bs*bs; 1631a23d5eceSKris Buschelman b->mbs = mbs; 1632a23d5eceSKris Buschelman b->Mbs = Mbs; 1633de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1634de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1635a23d5eceSKris Buschelman 1636a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1637d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1638a23d5eceSKris Buschelman } 1639d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1640d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1641a23d5eceSKris Buschelman 1642d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1643d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1644a23d5eceSKris Buschelman 1645526dfc15SBarry Smith if (!B->preallocated) { 1646f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1647d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16489c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 16493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1650f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1651d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16524aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 16533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1654ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1655526dfc15SBarry Smith } 1656a23d5eceSKris Buschelman 1657526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1658526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 165926fbe8dcSKarl Rupp 1660526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1661a23d5eceSKris Buschelman PetscFunctionReturn(0); 1662a23d5eceSKris Buschelman } 1663a23d5eceSKris Buschelman 1664dfb205c3SBarry Smith #undef __FUNCT__ 1665dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1666dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1667dfb205c3SBarry Smith { 1668dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1669dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1670dfb205c3SBarry Smith const PetscInt *JJ =0; 1671dfb205c3SBarry Smith PetscScalar *values=0; 1672dfb205c3SBarry Smith PetscErrorCode ierr; 1673dfb205c3SBarry Smith 1674dfb205c3SBarry Smith PetscFunctionBegin; 1675ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1676dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1677dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1678dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1679dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1680e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1681dfb205c3SBarry Smith m = B->rmap->n/bs; 1682dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1683dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1684dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1685dfb205c3SBarry Smith 1686dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1687dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1688dfb205c3SBarry Smith for (i=0; i<m; i++) { 1689dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1690dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1691dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1692dfb205c3SBarry Smith JJ = jj + ii[i]; 1693dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1694dfb205c3SBarry Smith if (*JJ >= cstart) break; 1695dfb205c3SBarry Smith JJ++; 1696dfb205c3SBarry Smith } 1697dfb205c3SBarry Smith d = 0; 1698dfb205c3SBarry Smith for (; j<nz; j++) { 1699dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1700dfb205c3SBarry Smith d++; 1701dfb205c3SBarry Smith } 1702dfb205c3SBarry Smith d_nnz[i] = d; 1703dfb205c3SBarry Smith o_nnz[i] = nz - d; 1704dfb205c3SBarry Smith } 1705dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1706dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1707dfb205c3SBarry Smith 1708dfb205c3SBarry Smith values = (PetscScalar*)V; 1709dfb205c3SBarry Smith if (!values) { 1710785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1711dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1712dfb205c3SBarry Smith } 1713dfb205c3SBarry Smith for (i=0; i<m; i++) { 1714dfb205c3SBarry Smith PetscInt row = i + rstart; 1715dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1716dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1717dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1718dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1719dfb205c3SBarry Smith } 1720dfb205c3SBarry Smith 1721dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1722dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1723dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17247827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1725dfb205c3SBarry Smith PetscFunctionReturn(0); 1726dfb205c3SBarry Smith } 1727dfb205c3SBarry Smith 17280bad9183SKris Buschelman /*MC 1729fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1730828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1731828413b8SBarry Smith the matrix is stored. 1732828413b8SBarry Smith 1733828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1734828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17350bad9183SKris Buschelman 17360bad9183SKris Buschelman Options Database Keys: 17370bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17380bad9183SKris Buschelman 17390bad9183SKris Buschelman Level: beginner 17400bad9183SKris Buschelman 17410bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17420bad9183SKris Buschelman M*/ 17430bad9183SKris Buschelman 17448cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1745aa5a9175SDahai Guo 1746a23d5eceSKris Buschelman #undef __FUNCT__ 17474a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17488cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1749b5df2d14SHong Zhang { 1750b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1751dfbe8321SBarry Smith PetscErrorCode ierr; 175294ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang PetscFunctionBegin; 1755b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1756b0a32e0cSBarry Smith B->data = (void*)b; 1757b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1758b5df2d14SHong Zhang 1759b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1760b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1761b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1762b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 176326fbe8dcSKarl Rupp 1764ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1765ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1766b5df2d14SHong Zhang 1767b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1768854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 1769b5df2d14SHong Zhang 1770b5df2d14SHong Zhang /* build cache for off array entries formed */ 1771ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 177226fbe8dcSKarl Rupp 1773b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17740298fd71SBarry Smith b->colmap = NULL; 17750298fd71SBarry Smith b->garray = NULL; 1776b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1777b5df2d14SHong Zhang 1778b5df2d14SHong Zhang /* stuff used in block assembly */ 1779b5df2d14SHong Zhang b->barray = 0; 1780b5df2d14SHong Zhang 1781b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1782b5df2d14SHong Zhang b->lvec = 0; 1783b5df2d14SHong Zhang b->Mvctx = 0; 178440781036SHong Zhang b->slvec0 = 0; 178540781036SHong Zhang b->slvec0b = 0; 178640781036SHong Zhang b->slvec1 = 0; 178740781036SHong Zhang b->slvec1a = 0; 178840781036SHong Zhang b->slvec1b = 0; 178940781036SHong Zhang b->sMvctx = 0; 1790b5df2d14SHong Zhang 1791b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1792b5df2d14SHong Zhang b->rowindices = 0; 1793b5df2d14SHong Zhang b->rowvalues = 0; 1794b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1795b5df2d14SHong Zhang 1796b5df2d14SHong Zhang /* hash table stuff */ 1797b5df2d14SHong Zhang b->ht = 0; 1798b5df2d14SHong Zhang b->hd = 0; 1799b5df2d14SHong Zhang b->ht_size = 0; 1800b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1801b5df2d14SHong Zhang b->ht_fact = 0; 1802b5df2d14SHong Zhang b->ht_total_ct = 0; 1803b5df2d14SHong Zhang b->ht_insert_ct = 0; 1804b5df2d14SHong Zhang 18057a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18067a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18077a868f3eSHong Zhang 180859ffdab8SBarry Smith b->in_loc = 0; 180959ffdab8SBarry Smith b->v_loc = 0; 181059ffdab8SBarry Smith b->n_loc = 0; 181194ae4db5SBarry Smith 1812bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1813bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1814bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1815bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1816bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1817bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1818*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1819*6214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 1820*6214f412SHong Zhang #endif 1821aa5a9175SDahai Guo 182223ce1328SBarry Smith B->symmetric = PETSC_TRUE; 182323ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 182423ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 182523ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 182626fbe8dcSKarl Rupp 182717667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 182894ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 182994ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 183094ae4db5SBarry Smith if (flg) { 183194ae4db5SBarry Smith PetscReal fact = 1.39; 183294ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 183394ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 183494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 183594ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 183694ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 183794ae4db5SBarry Smith } 183894ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1839b5df2d14SHong Zhang PetscFunctionReturn(0); 1840b5df2d14SHong Zhang } 1841b5df2d14SHong Zhang 1842209238afSKris Buschelman /*MC 1843002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1844209238afSKris Buschelman 1845209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1846209238afSKris Buschelman and MATMPISBAIJ otherwise. 1847209238afSKris Buschelman 1848209238afSKris Buschelman Options Database Keys: 1849209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1850209238afSKris Buschelman 1851209238afSKris Buschelman Level: beginner 1852209238afSKris Buschelman 1853209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1854209238afSKris Buschelman M*/ 1855209238afSKris Buschelman 18564a2ae208SSatish Balay #undef __FUNCT__ 18574a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1858b5df2d14SHong Zhang /*@C 1859b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1860b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1861b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1862b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang Collective on Mat 1865b5df2d14SHong Zhang 1866b5df2d14SHong Zhang Input Parameters: 18671c4f3114SJed Brown + B - the matrix 1868bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1869bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1870b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1871b5df2d14SHong Zhang submatrix (same for all local rows) 1872b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18736d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18740298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 187595742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1876b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1877b5df2d14SHong Zhang submatrix (same for all local rows). 1878b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1879c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18800298fd71SBarry Smith (possibly different for each block row) or NULL. 1881b5df2d14SHong Zhang 1882b5df2d14SHong Zhang 1883b5df2d14SHong Zhang Options Database Keys: 1884b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1885b5df2d14SHong Zhang block calculations (much slower) 1886b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1887b5df2d14SHong Zhang 1888b5df2d14SHong Zhang Notes: 1889b5df2d14SHong Zhang 1890b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1891b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1892b5df2d14SHong Zhang 189349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 189449a6f317SBarry Smith 1895b5df2d14SHong Zhang Storage Information: 1896b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1897b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1898b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1899b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1900b5df2d14SHong Zhang 1901b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1902b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 19030298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1904b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1905b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1906b5df2d14SHong Zhang 1907aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1908aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1909aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1910aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1911aa95bbe8SBarry Smith 1912b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1913b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1914b5df2d14SHong Zhang 1915b5df2d14SHong Zhang .vb 1916b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1917a4b1a0f6SJed Brown -------------------------- 1918c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1919c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1920c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1921a4b1a0f6SJed Brown -------------------------- 1922b5df2d14SHong Zhang .ve 1923b5df2d14SHong Zhang 1924b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1925b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19266d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19276d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1928b5df2d14SHong Zhang 19296d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19306d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1931c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1932c2fc9fa9SBarry Smith 1933b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1934b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1935b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1936b5df2d14SHong Zhang matrices. 1937b5df2d14SHong Zhang 1938b5df2d14SHong Zhang Level: intermediate 1939b5df2d14SHong Zhang 1940b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1941b5df2d14SHong Zhang 1942ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1943b5df2d14SHong Zhang @*/ 19447087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1945b5df2d14SHong Zhang { 19464ac538c5SBarry Smith PetscErrorCode ierr; 1947b5df2d14SHong Zhang 1948b5df2d14SHong Zhang PetscFunctionBegin; 19496ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19506ba663aaSJed Brown PetscValidType(B,1); 19516ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19524ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1953b5df2d14SHong Zhang PetscFunctionReturn(0); 1954b5df2d14SHong Zhang } 1955b5df2d14SHong Zhang 19564a2ae208SSatish Balay #undef __FUNCT__ 195769b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1958a30f8f8cSSatish Balay /*@C 195969b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1960a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1961a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1962a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1963a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1964a30f8f8cSSatish Balay 1965a30f8f8cSSatish Balay Collective on MPI_Comm 1966a30f8f8cSSatish Balay 1967a30f8f8cSSatish Balay Input Parameters: 1968a30f8f8cSSatish Balay + comm - MPI communicator 1969bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1970bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1971a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1972a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1973a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1974a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1975a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1976a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1977a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1978a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1979a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1980a30f8f8cSSatish Balay submatrix (same for all local rows) 1981a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19826d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19830298fd71SBarry Smith (possibly different for each block block row) or NULL. 198495742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 198595742e49SBarry Smith set its value even if it is zero. 1986a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1987a30f8f8cSSatish Balay submatrix (same for all local rows). 1988a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1989a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19900298fd71SBarry Smith each block row) or NULL. 1991a30f8f8cSSatish Balay 1992a30f8f8cSSatish Balay Output Parameter: 1993a30f8f8cSSatish Balay . A - the matrix 1994a30f8f8cSSatish Balay 1995a30f8f8cSSatish Balay Options Database Keys: 1996a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1997a30f8f8cSSatish Balay block calculations (much slower) 1998a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1999a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2000a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2001a30f8f8cSSatish Balay 2002175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2003ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2004175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2005175b88e8SBarry Smith 2006a30f8f8cSSatish Balay Notes: 2007d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20086d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2009d1be2dadSMatthew Knepley 2010a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2011a30f8f8cSSatish Balay (possibly both). 2012a30f8f8cSSatish Balay 2013a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2014a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2015a30f8f8cSSatish Balay 201649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 201749a6f317SBarry Smith 2018a30f8f8cSSatish Balay Storage Information: 2019a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2020a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2021a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2022a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2023a30f8f8cSSatish Balay 2024a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2025a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20260298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2027a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2028a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2031a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2032a30f8f8cSSatish Balay 2033a30f8f8cSSatish Balay .vb 2034a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2035a4b1a0f6SJed Brown -------------------------- 2036c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2037c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2038c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2039a4b1a0f6SJed Brown -------------------------- 2040a30f8f8cSSatish Balay .ve 2041a30f8f8cSSatish Balay 2042a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2043a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20446d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20456d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2046a30f8f8cSSatish Balay 20476d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20486d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2049a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2050a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2051a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2052a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2053a30f8f8cSSatish Balay matrices. 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay Level: intermediate 2056a30f8f8cSSatish Balay 2057a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2058a30f8f8cSSatish Balay 205969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2060a30f8f8cSSatish Balay @*/ 2061a30f8f8cSSatish Balay 206269b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2063a30f8f8cSSatish Balay { 20646849ba73SBarry Smith PetscErrorCode ierr; 20651302d50aSBarry Smith PetscMPIInt size; 2066a30f8f8cSSatish Balay 2067a30f8f8cSSatish Balay PetscFunctionBegin; 2068f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2069f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2070273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2071273d9f13SBarry Smith if (size > 1) { 2072b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2073b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2074273d9f13SBarry Smith } else { 2075273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2076273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2077273d9f13SBarry Smith } 2078a30f8f8cSSatish Balay PetscFunctionReturn(0); 2079a30f8f8cSSatish Balay } 2080a30f8f8cSSatish Balay 2081a30f8f8cSSatish Balay 20824a2ae208SSatish Balay #undef __FUNCT__ 20834a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2085a30f8f8cSSatish Balay { 2086a30f8f8cSSatish Balay Mat mat; 2087a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2088dfbe8321SBarry Smith PetscErrorCode ierr; 2089d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2090387bc808SHong Zhang PetscScalar *array; 2091a30f8f8cSSatish Balay 2092a30f8f8cSSatish Balay PetscFunctionBegin; 2093a30f8f8cSSatish Balay *newmat = 0; 209426fbe8dcSKarl Rupp 2095ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2096d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20977adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20981d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20991e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21001e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2101e1b6402fSHong Zhang 2102d5f3da31SBarry Smith mat->factortype = matin->factortype; 2103273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 210482327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21057fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21067fff6886SHong Zhang 2107b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2108a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2109a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2110a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2111a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2112a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2113a30f8f8cSSatish Balay 2114899cda47SBarry Smith 2115a30f8f8cSSatish Balay a->size = oldmat->size; 2116a30f8f8cSSatish Balay a->rank = oldmat->rank; 2117a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2118a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2119a30f8f8cSSatish Balay a->rowindices = 0; 2120a30f8f8cSSatish Balay a->rowvalues = 0; 2121a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2122a30f8f8cSSatish Balay a->barray = 0; 2123899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2124899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2125899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2126899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2127a30f8f8cSSatish Balay 2128a30f8f8cSSatish Balay /* hash table stuff */ 2129a30f8f8cSSatish Balay a->ht = 0; 2130a30f8f8cSSatish Balay a->hd = 0; 2131a30f8f8cSSatish Balay a->ht_size = 0; 2132a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2133a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2134a30f8f8cSSatish Balay a->ht_total_ct = 0; 2135a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2136a30f8f8cSSatish Balay 2137899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2138a30f8f8cSSatish Balay if (oldmat->colmap) { 2139a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2140a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2141a30f8f8cSSatish Balay #else 2142854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 21433bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21441302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2145a30f8f8cSSatish Balay #endif 2146a30f8f8cSSatish Balay } else a->colmap = 0; 2147387bc808SHong Zhang 2148a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2149785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 21503bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21511302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2152a30f8f8cSSatish Balay } else a->garray = 0; 2153a30f8f8cSSatish Balay 2154ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2155a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 21563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 21583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 215982327fa8SHong Zhang 216082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 21613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 216282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 21633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2164387bc808SHong Zhang 2165387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21661ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2167778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2168778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21691ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21701ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2171778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21721ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 21733bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 21743bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 21753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 21763bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 21773bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2178387bc808SHong Zhang 2179387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2180387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2181387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 21823bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 218382327fa8SHong Zhang 2184a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 21853bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 21873bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2188140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay *newmat = mat; 2190a30f8f8cSSatish Balay PetscFunctionReturn(0); 2191a30f8f8cSSatish Balay } 2192a30f8f8cSSatish Balay 21934a2ae208SSatish Balay #undef __FUNCT__ 21945bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2195112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 219695936485SShri Abhyankar { 219795936485SShri Abhyankar PetscErrorCode ierr; 219895936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 219995936485SShri Abhyankar PetscScalar *vals,*buf; 2200ce94432eSBarry Smith MPI_Comm comm; 220195936485SShri Abhyankar MPI_Status status; 2202adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2203adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 220495936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 22053059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 220695936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 220795936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 220895936485SShri Abhyankar int fd; 220995936485SShri Abhyankar 221095936485SShri Abhyankar PetscFunctionBegin; 2211ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22120298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 22130298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 221495936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 22153059b6faSBarry Smith if (bs < 0) bs = 1; 221695936485SShri Abhyankar 221795936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 221895936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 221995936485SShri Abhyankar if (!rank) { 222095936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 222195936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 222295936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 222395936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 222495936485SShri Abhyankar } 222595936485SShri Abhyankar 222695936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 222795936485SShri Abhyankar 222895936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 222926fbe8dcSKarl Rupp M = header[1]; 223026fbe8dcSKarl Rupp N = header[2]; 223195936485SShri Abhyankar 223295936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 223395936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 223495936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 223595936485SShri Abhyankar 223695936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 223795936485SShri Abhyankar if (sizesset) { 223895936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 223995936485SShri Abhyankar } 2240abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2241abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 224295936485SShri Abhyankar 224395936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 224495936485SShri Abhyankar 224595936485SShri Abhyankar /* 224695936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 224795936485SShri Abhyankar divisible by the blocksize 224895936485SShri Abhyankar */ 224995936485SShri Abhyankar Mbs = M/bs; 225095936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 225195936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 225295936485SShri Abhyankar else Mbs++; 225395936485SShri Abhyankar if (extra_rows &&!rank) { 225495936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 225595936485SShri Abhyankar } 225695936485SShri Abhyankar 225795936485SShri Abhyankar /* determine ownership of all rows */ 225895936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 225995936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 226095936485SShri Abhyankar m = mbs*bs; 226195936485SShri Abhyankar } else { /* User Set */ 226295936485SShri Abhyankar m = newmat->rmap->n; 226395936485SShri Abhyankar mbs = m/bs; 226495936485SShri Abhyankar } 2265dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 22664dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 226795936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 226895936485SShri Abhyankar rowners[0] = 0; 226995936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 227095936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 227195936485SShri Abhyankar rstart = rowners[rank]; 227295936485SShri Abhyankar rend = rowners[rank+1]; 227395936485SShri Abhyankar 227495936485SShri Abhyankar /* distribute row lengths to all processors */ 2275785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 227695936485SShri Abhyankar if (!rank) { 2277854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 227895936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 227995936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2280785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 228195936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 228295936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 228395936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 228495936485SShri Abhyankar } else { 228595936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 228695936485SShri Abhyankar } 228795936485SShri Abhyankar 228895936485SShri Abhyankar if (!rank) { /* procs[0] */ 228995936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2290785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 229195936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 229295936485SShri Abhyankar for (i=0; i<size; i++) { 229395936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 229495936485SShri Abhyankar procsnz[i] += rowlengths[j]; 229595936485SShri Abhyankar } 229695936485SShri Abhyankar } 229795936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 229895936485SShri Abhyankar 229995936485SShri Abhyankar /* determine max buffer needed and allocate it */ 230095936485SShri Abhyankar maxnz = 0; 230195936485SShri Abhyankar for (i=0; i<size; i++) { 230295936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 230395936485SShri Abhyankar } 2304785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 230595936485SShri Abhyankar 230695936485SShri Abhyankar /* read in my part of the matrix column indices */ 230795936485SShri Abhyankar nz = procsnz[0]; 2308785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 230995936485SShri Abhyankar mycols = ibuf; 231095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 231195936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 231226fbe8dcSKarl Rupp if (size == 1) { 231326fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 231426fbe8dcSKarl Rupp } 231595936485SShri Abhyankar 231695936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 231795936485SShri Abhyankar for (i=1; i<size-1; i++) { 231895936485SShri Abhyankar nz = procsnz[i]; 231995936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 232095936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 232195936485SShri Abhyankar } 232295936485SShri Abhyankar /* read in the stuff for the last proc */ 232395936485SShri Abhyankar if (size != 1) { 232495936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 232595936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 232695936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 232795936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 232895936485SShri Abhyankar } 232995936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 233095936485SShri Abhyankar } else { /* procs[i], i>0 */ 233195936485SShri Abhyankar /* determine buffer space needed for message */ 233295936485SShri Abhyankar nz = 0; 233326fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2334785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 233595936485SShri Abhyankar mycols = ibuf; 233695936485SShri Abhyankar /* receive message of column indices*/ 233795936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 233895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 233995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 234095936485SShri Abhyankar } 234195936485SShri Abhyankar 234295936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2343dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2344dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 234595936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234695936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234795936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 234895936485SShri Abhyankar rowcount = 0; 234995936485SShri Abhyankar nzcount = 0; 235095936485SShri Abhyankar for (i=0; i<mbs; i++) { 235195936485SShri Abhyankar dcount = 0; 235295936485SShri Abhyankar odcount = 0; 235395936485SShri Abhyankar for (j=0; j<bs; j++) { 235495936485SShri Abhyankar kmax = locrowlens[rowcount]; 235595936485SShri Abhyankar for (k=0; k<kmax; k++) { 235695936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 235795936485SShri Abhyankar if (!mask[tmp]) { 235895936485SShri Abhyankar mask[tmp] = 1; 235995936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 236095936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 236195936485SShri Abhyankar } 236295936485SShri Abhyankar } 236395936485SShri Abhyankar rowcount++; 236495936485SShri Abhyankar } 236595936485SShri Abhyankar 236695936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 236795936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 236895936485SShri Abhyankar 236995936485SShri Abhyankar /* zero out the mask elements we set */ 237095936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 237195936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 237295936485SShri Abhyankar } 237395936485SShri Abhyankar if (!sizesset) { 237495936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 237595936485SShri Abhyankar } 237695936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23776816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 237895936485SShri Abhyankar 237995936485SShri Abhyankar if (!rank) { 2380785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 238195936485SShri Abhyankar /* read in my part of the matrix numerical values */ 238295936485SShri Abhyankar nz = procsnz[0]; 238395936485SShri Abhyankar vals = buf; 238495936485SShri Abhyankar mycols = ibuf; 238595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 238695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238726fbe8dcSKarl Rupp if (size == 1) { 238826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 238926fbe8dcSKarl Rupp } 239095936485SShri Abhyankar 239195936485SShri Abhyankar /* insert into matrix */ 239295936485SShri Abhyankar jj = rstart*bs; 239395936485SShri Abhyankar for (i=0; i<m; i++) { 239495936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 239595936485SShri Abhyankar mycols += locrowlens[i]; 239695936485SShri Abhyankar vals += locrowlens[i]; 239795936485SShri Abhyankar jj++; 239895936485SShri Abhyankar } 239995936485SShri Abhyankar 240095936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 240195936485SShri Abhyankar for (i=1; i<size-1; i++) { 240295936485SShri Abhyankar nz = procsnz[i]; 240395936485SShri Abhyankar vals = buf; 240495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 240595936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 240695936485SShri Abhyankar } 240795936485SShri Abhyankar /* the last proc */ 240895936485SShri Abhyankar if (size != 1) { 240995936485SShri Abhyankar nz = procsnz[i] - extra_rows; 241095936485SShri Abhyankar vals = buf; 241195936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 241295936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 241395936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 241495936485SShri Abhyankar } 241595936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 241695936485SShri Abhyankar 241795936485SShri Abhyankar } else { 241895936485SShri Abhyankar /* receive numeric values */ 2419785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 242095936485SShri Abhyankar 242195936485SShri Abhyankar /* receive message of values*/ 242295936485SShri Abhyankar vals = buf; 242395936485SShri Abhyankar mycols = ibuf; 242495936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 242595936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 242695936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 242795936485SShri Abhyankar 242895936485SShri Abhyankar /* insert into matrix */ 242995936485SShri Abhyankar jj = rstart*bs; 243095936485SShri Abhyankar for (i=0; i<m; i++) { 243195936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 243295936485SShri Abhyankar mycols += locrowlens[i]; 243395936485SShri Abhyankar vals += locrowlens[i]; 243495936485SShri Abhyankar jj++; 243595936485SShri Abhyankar } 243695936485SShri Abhyankar } 243795936485SShri Abhyankar 243895936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 243995936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 244095936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 244195936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 244295936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 244395936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 244495936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 244595936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 244695936485SShri Abhyankar PetscFunctionReturn(0); 244795936485SShri Abhyankar } 244895936485SShri Abhyankar 244995936485SShri Abhyankar #undef __FUNCT__ 24504a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2451dcf5cc72SBarry Smith /*XXXXX@ 2452a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2453a30f8f8cSSatish Balay 2454a30f8f8cSSatish Balay Input Parameters: 2455a30f8f8cSSatish Balay . mat - the matrix 2456a30f8f8cSSatish Balay . fact - factor 2457a30f8f8cSSatish Balay 2458c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2459a30f8f8cSSatish Balay 2460a30f8f8cSSatish Balay Level: advanced 2461a30f8f8cSSatish Balay 2462a30f8f8cSSatish Balay Notes: 2463a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2464a30f8f8cSSatish Balay 2465a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2466a30f8f8cSSatish Balay 2467a30f8f8cSSatish Balay .seealso: MatSetOption() 2468dcf5cc72SBarry Smith @XXXXX*/ 2469dcf5cc72SBarry Smith 247024d5174aSHong Zhang 24714a2ae208SSatish Balay #undef __FUNCT__ 2472985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2473985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 247424d5174aSHong Zhang { 247524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2476f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2477ca54ac64SHong Zhang PetscReal atmp; 247887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2479dfbe8321SBarry Smith PetscErrorCode ierr; 24801302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24811302d50aSBarry Smith PetscMPIInt rank,size; 24821302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 248387828ca2SBarry Smith PetscScalar *va; 24848a1c53f2SBarry Smith MatScalar *ba; 2485f4c0e9e4SHong Zhang MPI_Status stat; 248624d5174aSHong Zhang 248724d5174aSHong Zhang PetscFunctionBegin; 2488e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24890298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24901ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2491f4c0e9e4SHong Zhang 2492ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2493ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2494f4c0e9e4SHong Zhang 2495d0f46423SBarry Smith bs = A->rmap->bs; 2496f4c0e9e4SHong Zhang mbs = a->mbs; 2497f4c0e9e4SHong Zhang Mbs = a->Mbs; 2498f4c0e9e4SHong Zhang ba = b->a; 2499f4c0e9e4SHong Zhang bi = b->i; 2500f4c0e9e4SHong Zhang bj = b->j; 2501f4c0e9e4SHong Zhang 2502f4c0e9e4SHong Zhang /* find ownerships */ 2503d0f46423SBarry Smith rowners_bs = A->rmap->range; 2504f4c0e9e4SHong Zhang 2505f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2506785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2507ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2508f4c0e9e4SHong Zhang 2509f4c0e9e4SHong Zhang /* row_max for B */ 2510b8475685SHong Zhang if (rank != size-1) { 2511f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2512f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2513f4c0e9e4SHong Zhang brow = bs*i; 2514f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2515f4c0e9e4SHong Zhang bcol = bs*(*bj); 2516f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2517ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 251804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2519f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2520f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2521ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2522ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2523f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2524f4c0e9e4SHong Zhang } 2525f4c0e9e4SHong Zhang } 2526f4c0e9e4SHong Zhang bj++; 2527f4c0e9e4SHong Zhang } 2528f4c0e9e4SHong Zhang } 2529f4c0e9e4SHong Zhang 2530f4c0e9e4SHong Zhang /* send values to its owners */ 2531f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2532f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2533ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2534ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2535ca54ac64SHong Zhang } 2536f4c0e9e4SHong Zhang } 2537f4c0e9e4SHong Zhang 2538f4c0e9e4SHong Zhang /* receive values */ 2539ca54ac64SHong Zhang if (rank) { 2540f4c0e9e4SHong Zhang rvalues = work; 2541ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2542f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2543ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2544f4c0e9e4SHong Zhang /* process values */ 2545f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2546ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2547f4c0e9e4SHong Zhang } 2548f4c0e9e4SHong Zhang } 2549ca54ac64SHong Zhang } 2550f4c0e9e4SHong Zhang 25511ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2552ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 255324d5174aSHong Zhang PetscFunctionReturn(0); 255424d5174aSHong Zhang } 25552798e883SHong Zhang 25562798e883SHong Zhang #undef __FUNCT__ 255741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 255841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25592798e883SHong Zhang { 25602798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2561dfbe8321SBarry Smith PetscErrorCode ierr; 2562d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25633649974fSBarry Smith PetscScalar *x,*ptr,*from; 2564ffe4fb16SHong Zhang Vec bb1; 25653649974fSBarry Smith const PetscScalar *b; 2566ffe4fb16SHong Zhang 2567ffe4fb16SHong Zhang PetscFunctionBegin; 2568e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2569e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2570ffe4fb16SHong Zhang 2571a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 257241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2573a2b30743SBarry Smith PetscFunctionReturn(0); 2574a2b30743SBarry Smith } 2575a2b30743SBarry Smith 2576ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2577ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 257841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2579ffe4fb16SHong Zhang its--; 2580ffe4fb16SHong Zhang } 2581ffe4fb16SHong Zhang 2582ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2583ffe4fb16SHong Zhang while (its--) { 2584ffe4fb16SHong Zhang 2585ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2586ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2587ffe4fb16SHong Zhang 2588ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25891ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25901ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2591ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25921ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2593ffe4fb16SHong Zhang 2594efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2595ffe4fb16SHong Zhang 2596ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25971ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25983649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2599ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26001ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2601ffe4fb16SHong Zhang 2602ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2603fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2604ffe4fb16SHong Zhang 2605ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26061ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2607a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2608ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2609ffe4fb16SHong Zhang 2610ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2611ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2612ffe4fb16SHong Zhang 2613ffe4fb16SHong Zhang /* local diagonal sweep */ 261441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2615ffe4fb16SHong Zhang } 26166bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2617fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 261841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2619fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 262041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2621fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2622fa22f6d0SBarry Smith Vec xx1; 2623ace3abfcSBarry Smith PetscBool hasop; 262420f1ed55SBarry Smith const PetscScalar *diag; 2625887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 262620f1ed55SBarry Smith PetscInt i,n; 2627fa22f6d0SBarry Smith 2628fa22f6d0SBarry Smith if (!mat->xx1) { 2629fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2630fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2631fa22f6d0SBarry Smith } 2632fa22f6d0SBarry Smith xx1 = mat->xx1; 2633fa22f6d0SBarry Smith bb1 = mat->bb1; 2634fa22f6d0SBarry Smith 263541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2636fa22f6d0SBarry Smith 2637fa22f6d0SBarry Smith if (!mat->diag) { 2638effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26392a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2640fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2641fa22f6d0SBarry Smith } 2642fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2643fa22f6d0SBarry Smith 2644fa22f6d0SBarry Smith if (hasop) { 2645fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2646887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 264720f1ed55SBarry Smith } else { 264820f1ed55SBarry Smith /* 264920f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 265020f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2651887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 265220f1ed55SBarry Smith */ 265320f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26543649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26553649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 265620f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 265720f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2658887ee2caSBarry Smith if (omega == 1.0) { 265926fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 266020f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2661887ee2caSBarry Smith } else { 266226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2663887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2664887ee2caSBarry Smith } 266520f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26663649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26673649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 266820f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 266920f1ed55SBarry Smith } 2670fa22f6d0SBarry Smith 2671fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2672fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2673fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2674fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2675fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2676fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2677fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2678fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2679fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2680fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2681effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2682fa22f6d0SBarry Smith 2683fa22f6d0SBarry Smith /* local sweep */ 268441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2685fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2686f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2687ffe4fb16SHong Zhang PetscFunctionReturn(0); 2688ffe4fb16SHong Zhang } 2689ffe4fb16SHong Zhang 2690ffe4fb16SHong Zhang #undef __FUNCT__ 269141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 269241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2693ffe4fb16SHong Zhang { 2694ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2695dfbe8321SBarry Smith PetscErrorCode ierr; 26962798e883SHong Zhang Vec lvec1,bb1; 26972798e883SHong Zhang 26982798e883SHong Zhang PetscFunctionBegin; 2699e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2700e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27012798e883SHong Zhang 2702c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 27032798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 270441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27052798e883SHong Zhang its--; 27062798e883SHong Zhang } 27072798e883SHong Zhang 27082798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27092798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27102798e883SHong Zhang while (its--) { 2711ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27122798e883SHong Zhang 27132798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27142798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2715efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27162798e883SHong Zhang 2717ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27182798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2719ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27202798e883SHong Zhang 27212798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2722efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27232798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27242798e883SHong Zhang 2725ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27262798e883SHong Zhang 2727c14dc6b6SHong Zhang /* diagonal sweep */ 272841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27292798e883SHong Zhang } 27306bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27316bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27326bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27332798e883SHong Zhang PetscFunctionReturn(0); 27342798e883SHong Zhang } 27352798e883SHong Zhang 2736dfb205c3SBarry Smith #undef __FUNCT__ 2737dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2738dfb205c3SBarry Smith /*@ 2739dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2740dfb205c3SBarry Smith CSR format the local rows. 2741dfb205c3SBarry Smith 2742dfb205c3SBarry Smith Collective on MPI_Comm 2743dfb205c3SBarry Smith 2744dfb205c3SBarry Smith Input Parameters: 2745dfb205c3SBarry Smith + comm - MPI communicator 2746dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2747dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2748dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2749dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2750dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2751dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2752dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2753dfb205c3SBarry Smith . i - row indices 2754dfb205c3SBarry Smith . j - column indices 2755dfb205c3SBarry Smith - a - matrix values 2756dfb205c3SBarry Smith 2757dfb205c3SBarry Smith Output Parameter: 2758dfb205c3SBarry Smith . mat - the matrix 2759dfb205c3SBarry Smith 2760dfb205c3SBarry Smith Level: intermediate 2761dfb205c3SBarry Smith 2762dfb205c3SBarry Smith Notes: 2763dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2764dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2765dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2766dfb205c3SBarry Smith 2767dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2768dfb205c3SBarry Smith 2769dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2770dfb205c3SBarry Smith 2771dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 277269b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2773dfb205c3SBarry Smith @*/ 27747087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2775dfb205c3SBarry Smith { 2776dfb205c3SBarry Smith PetscErrorCode ierr; 2777dfb205c3SBarry Smith 2778dfb205c3SBarry Smith 2779dfb205c3SBarry Smith PetscFunctionBegin; 2780f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2781dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2782dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2783dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2784dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2785dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2786dfb205c3SBarry Smith PetscFunctionReturn(0); 2787dfb205c3SBarry Smith } 2788dfb205c3SBarry Smith 2789dfb205c3SBarry Smith 2790dfb205c3SBarry Smith #undef __FUNCT__ 2791dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2792dfb205c3SBarry Smith /*@C 2793dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2794dfb205c3SBarry Smith (the default parallel PETSc format). 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith Collective on MPI_Comm 2797dfb205c3SBarry Smith 2798dfb205c3SBarry Smith Input Parameters: 27991c4f3114SJed Brown + B - the matrix 2800dfb205c3SBarry Smith . bs - the block size 2801dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2802dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2803dfb205c3SBarry Smith - v - optional values in the matrix 2804dfb205c3SBarry Smith 2805dfb205c3SBarry Smith Level: developer 2806dfb205c3SBarry Smith 2807dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2808dfb205c3SBarry Smith 280969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2810dfb205c3SBarry Smith @*/ 28117087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2812dfb205c3SBarry Smith { 28134ac538c5SBarry Smith PetscErrorCode ierr; 2814dfb205c3SBarry Smith 2815dfb205c3SBarry Smith PetscFunctionBegin; 28164ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2817dfb205c3SBarry Smith PetscFunctionReturn(0); 2818dfb205c3SBarry Smith } 2819dfb205c3SBarry Smith 2820de4b53ebSHong Zhang #undef __FUNCT__ 282110c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 282210c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28234dcd73b1SHong Zhang { 28244dcd73b1SHong Zhang PetscErrorCode ierr; 282510c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 282610c56fdeSHong Zhang PetscInt *indx; 282710c56fdeSHong Zhang PetscScalar *values; 2828dfb205c3SBarry Smith 28294dcd73b1SHong Zhang PetscFunctionBegin; 28304dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 283110c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 283210c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 283310c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 283410c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 28354dcd73b1SHong Zhang 283610c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 283710c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 283810c56fdeSHong Zhang if (n == PETSC_DECIDE) { 283910c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 284010c56fdeSHong Zhang } 284110c56fdeSHong Zhang /* Check sum(n) = Nbs */ 284210c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 284310c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 284410c56fdeSHong Zhang 284510c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 284610c56fdeSHong Zhang rstart -= mbs; 28474dcd73b1SHong Zhang 28484dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 284910c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 2850e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 285110c56fdeSHong Zhang for (i=0; i<mbs; i++) { 28524dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 28534dcd73b1SHong Zhang nnz = nnz/bs; 28544dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 28554dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 28564dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 28574dcd73b1SHong Zhang } 2858e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 28594dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 28604dcd73b1SHong Zhang 28614dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 286210c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 28634dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 28644dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 28654dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 28664dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 28674dcd73b1SHong Zhang } 28684dcd73b1SHong Zhang 286910c56fdeSHong Zhang /* numeric phase */ 28704dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 287110c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 28724dcd73b1SHong Zhang 2873e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 28744dcd73b1SHong Zhang for (i=0; i<m; i++) { 28754dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 28764dcd73b1SHong Zhang Ii = i + rstart; 287710c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 28784dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 28794dcd73b1SHong Zhang } 2880e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 288110c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 288210c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28834dcd73b1SHong Zhang PetscFunctionReturn(0); 28844dcd73b1SHong Zhang } 2885