xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 6363de48e630e8e0983303a74d1f2a62cabf06b1)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
146d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
147d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
16971fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
2610880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++  = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3080880e062SHong Zhang         }
3090880e062SHong Zhang         else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3230880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
3260880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3300880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3360880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col =  in[j];
3380880e062SHong Zhang             }
3390880e062SHong Zhang           }
3400880e062SHong Zhang           else col = in[j];
341e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3420880e062SHong Zhang         }
3430880e062SHong Zhang       }
3440880e062SHong Zhang     } else {
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
36897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
376a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data --;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     } else {
39629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
397a30f8f8cSSatish Balay     }
398a30f8f8cSSatish Balay   }
399a30f8f8cSSatish Balay  PetscFunctionReturn(0);
400a30f8f8cSSatish Balay }
401a30f8f8cSSatish Balay 
4024a2ae208SSatish Balay #undef __FUNCT__
4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
405a30f8f8cSSatish Balay {
406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
407dfbe8321SBarry Smith   PetscErrorCode ierr;
408a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
409a30f8f8cSSatish Balay 
410a30f8f8cSSatish Balay   PetscFunctionBegin;
411a30f8f8cSSatish Balay   if (baij->size == 1) {
412a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
413a30f8f8cSSatish Balay   } else {
414a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
415f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
418a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4207adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
422a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4230b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4240b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4250b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4260b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
427899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
428d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4290b8dc8d2SHong Zhang       MatScalar    *v;
4300b8dc8d2SHong Zhang 
431d0f46423SBarry Smith       ierr  = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
432d0f46423SBarry Smith       rsum2 = rsum + mat->cmap->N;
433d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4430b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4600b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
4720b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
473a30f8f8cSSatish Balay     } else {
47429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
475a30f8f8cSSatish Balay     }
476a30f8f8cSSatish Balay   }
477a30f8f8cSSatish Balay   PetscFunctionReturn(0);
478a30f8f8cSSatish Balay }
479a30f8f8cSSatish Balay 
4804a2ae208SSatish Balay #undef __FUNCT__
4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
483a30f8f8cSSatish Balay {
484a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
485dfbe8321SBarry Smith   PetscErrorCode ierr;
4861302d50aSBarry Smith   PetscInt       nstash,reallocs;
487a30f8f8cSSatish Balay   InsertMode     addv;
488a30f8f8cSSatish Balay 
489a30f8f8cSSatish Balay   PetscFunctionBegin;
490a30f8f8cSSatish Balay   if (baij->donotstash) {
491a30f8f8cSSatish Balay     PetscFunctionReturn(0);
492a30f8f8cSSatish Balay   }
493a30f8f8cSSatish Balay 
494a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4957adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
496a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
49729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
498a30f8f8cSSatish Balay   }
499a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
500a30f8f8cSSatish Balay 
501d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5021e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
503a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   PetscFunctionReturn(0);
508a30f8f8cSSatish Balay }
509a30f8f8cSSatish Balay 
5104a2ae208SSatish Balay #undef __FUNCT__
5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
513a30f8f8cSSatish Balay {
514a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
515a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5166849ba73SBarry Smith   PetscErrorCode ierr;
51713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
518e44c0bd4SBarry Smith   PetscInt       *row,*col;
519e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52013f74950SBarry Smith   PetscMPIInt    n;
521a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
522a30f8f8cSSatish Balay   MatScalar      *val;
523a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
524a30f8f8cSSatish Balay 
52591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
526a30f8f8cSSatish Balay   PetscFunctionBegin;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay   if (!baij->donotstash) {
529a30f8f8cSSatish Balay     while (1) {
530a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       if (!flg) break;
532a30f8f8cSSatish Balay 
533a30f8f8cSSatish Balay       for (i=0; i<n;) {
534a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
535a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
536a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
537a30f8f8cSSatish Balay         else       ncols = n-i;
538a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
539dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
540a30f8f8cSSatish Balay         i = j;
541a30f8f8cSSatish Balay       }
542a30f8f8cSSatish Balay     }
543a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
545a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
546a30f8f8cSSatish Balay        restore the original flags */
547a30f8f8cSSatish Balay     r1 = baij->roworiented;
548a30f8f8cSSatish Balay     r2 = a->roworiented;
54991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
550a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
551a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
553a30f8f8cSSatish Balay     while (1) {
554a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       if (!flg) break;
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay       for (i=0; i<n;) {
558a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
559a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
560a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
561a30f8f8cSSatish Balay         else       ncols = n-i;
562dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
563a30f8f8cSSatish Balay         i = j;
564a30f8f8cSSatish Balay       }
565a30f8f8cSSatish Balay     }
566a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
576a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
577a30f8f8cSSatish Balay   /*
578a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
579a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
580a30f8f8cSSatish Balay   */
581a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5827adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
584c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     }
586a30f8f8cSSatish Balay   }
587a30f8f8cSSatish Balay 
588a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
590a30f8f8cSSatish Balay   }
59191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
595a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   baij->rowvalues = 0;
5975222a1afSHong Zhang 
598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
599a30f8f8cSSatish Balay }
600a30f8f8cSSatish Balay 
601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
605a30f8f8cSSatish Balay {
606a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
607dfbe8321SBarry Smith   PetscErrorCode    ierr;
608d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6091302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
611b0a32e0cSBarry Smith   PetscViewer       sviewer;
612f3ef73ceSBarry Smith   PetscViewerFormat format;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
61532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
616fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61732077d6dSBarry Smith   if (iascii) {
618b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
619456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
620a30f8f8cSSatish Balay       MatInfo info;
6217adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
624d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
625d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       PetscFunctionReturn(0);
634fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
638c1490034SHong Zhang       PetscFunctionReturn(0);
639a30f8f8cSSatish Balay     }
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   if (isdraw) {
643b0a32e0cSBarry Smith     PetscDraw  draw;
644a30f8f8cSSatish Balay     PetscTruth isnull;
645b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
646b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   if (size == 1) {
6507adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
652a30f8f8cSSatish Balay   } else {
653a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
654a30f8f8cSSatish Balay     Mat          A;
65565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
657d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
658a30f8f8cSSatish Balay     MatScalar    *a;
659a30f8f8cSSatish Balay 
660f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6617adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     if (!rank) {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     } else {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     }
667f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
668d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay     /* copy over the A part */
67265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
673a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6741302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
677e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
678a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
679a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
680e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
681a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
682dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
683a30f8f8cSSatish Balay           col++; a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
693a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
698a30f8f8cSSatish Balay           col++; a += bs;
699a30f8f8cSSatish Balay         }
700a30f8f8cSSatish Balay       }
701a30f8f8cSSatish Balay     }
702a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     /*
706a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
707b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
708a30f8f8cSSatish Balay     */
709b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71065d70643SHong Zhang     if (!rank) {
7117adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     }
714b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay   PetscFunctionReturn(0);
718a30f8f8cSSatish Balay }
719a30f8f8cSSatish Balay 
7204a2ae208SSatish Balay #undef __FUNCT__
7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
723a30f8f8cSSatish Balay {
724dfbe8321SBarry Smith   PetscErrorCode ierr;
72532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   PetscFunctionBegin;
72832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
729fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
730b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
731fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
733a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   } else {
7351302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay   PetscFunctionReturn(0);
738a30f8f8cSSatish Balay }
739a30f8f8cSSatish Balay 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
743a30f8f8cSSatish Balay {
744a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   PetscFunctionBegin;
748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
749d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
750a30f8f8cSSatish Balay #endif
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7569c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #else
75805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
761a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
762a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76340781036SHong Zhang   if (baij->slvec0) {
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76640781036SHong Zhang   }
76740781036SHong Zhang   if (baij->slvec1) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77140781036SHong Zhang   }
77240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
776fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
778fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
77965460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
781a30f8f8cSSatish Balay #endif
78259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
784899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
786901853e0SKris Buschelman 
787dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
793a30f8f8cSSatish Balay }
794a30f8f8cSSatish Balay 
7954a2ae208SSatish Balay #undef __FUNCT__
796547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
797547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
798547795f9SHong Zhang {
799547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
800547795f9SHong Zhang   PetscErrorCode ierr;
801547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
802547795f9SHong Zhang   PetscScalar    *x,*from;
803547795f9SHong Zhang 
804547795f9SHong Zhang   PetscFunctionBegin;
805547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
806547795f9SHong Zhang   if (nt != A->cmap->n) {
807547795f9SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
808547795f9SHong Zhang   }
809547795f9SHong Zhang 
810547795f9SHong Zhang   /* diagonal part */
811547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* subdiagonal part */
815547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* copy x into the vec slvec0 */
818547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824547795f9SHong Zhang 
825547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827547795f9SHong Zhang   /* supperdiagonal part */
828547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829547795f9SHong Zhang   PetscFunctionReturn(0);
830547795f9SHong Zhang }
831547795f9SHong Zhang 
832547795f9SHong Zhang #undef __FUNCT__
833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
835a9d4b620SHong Zhang {
836a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
838d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
839fa22f6d0SBarry Smith   PetscScalar    *x,*from;
840a9d4b620SHong Zhang 
841a9d4b620SHong Zhang   PetscFunctionBegin;
842a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
843d0f46423SBarry Smith   if (nt != A->cmap->n) {
844a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
845a9d4b620SHong Zhang   }
846a9d4b620SHong Zhang 
847a9d4b620SHong Zhang   /* diagonal part */
848a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
849fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
850a9d4b620SHong Zhang 
851a9d4b620SHong Zhang   /* subdiagonal part */
852a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
853fc165ae2SBarry Smith 
854a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8551ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8561ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
857a9d4b620SHong Zhang 
858fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
859fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8601ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
861fc165ae2SBarry Smith 
862fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
863ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
864a9d4b620SHong Zhang   /* supperdiagonal part */
865a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
866a9d4b620SHong Zhang   PetscFunctionReturn(0);
867a9d4b620SHong Zhang }
868a9d4b620SHong Zhang 
869a9d4b620SHong Zhang #undef __FUNCT__
87040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
871dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
872a30f8f8cSSatish Balay {
873a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
874dfbe8321SBarry Smith   PetscErrorCode ierr;
8751302d50aSBarry Smith   PetscInt       nt;
876a30f8f8cSSatish Balay 
877a30f8f8cSSatish Balay   PetscFunctionBegin;
878a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
879d0f46423SBarry Smith   if (nt != A->cmap->n) {
88029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
881a30f8f8cSSatish Balay   }
882a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
883d0f46423SBarry Smith   if (nt != A->rmap->N) {
88429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
885a30f8f8cSSatish Balay   }
88665d70643SHong Zhang 
887ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
888b941877fSHong Zhang   /* do diagonal part */
889b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
890b941877fSHong Zhang   /* do supperdiagonal part */
891ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
892b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
893b941877fSHong Zhang   /* do subdiagonal part */
894b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
895ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
896ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89765d70643SHong Zhang 
898a30f8f8cSSatish Balay   PetscFunctionReturn(0);
899a30f8f8cSSatish Balay }
900a30f8f8cSSatish Balay 
9014a2ae208SSatish Balay #undef __FUNCT__
9024a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
903dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
904a30f8f8cSSatish Balay {
905de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
906dfbe8321SBarry Smith   PetscErrorCode ierr;
907d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
908a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
909a9d4b620SHong Zhang 
910a9d4b620SHong Zhang   PetscFunctionBegin;
911a9d4b620SHong Zhang   /*
9127adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9137adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
914a9d4b620SHong Zhang   */
915a9d4b620SHong Zhang   /* diagonal part */
916a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9172dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
918a9d4b620SHong Zhang 
919a9d4b620SHong Zhang   /* subdiagonal part */
920a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
921a9d4b620SHong Zhang 
922a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9231ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9241ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
925a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9261ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
927a9d4b620SHong Zhang 
928ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9291ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
930ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
931a9d4b620SHong Zhang 
932a9d4b620SHong Zhang   /* supperdiagonal part */
933a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
934a9d4b620SHong Zhang 
935a9d4b620SHong Zhang   PetscFunctionReturn(0);
936a9d4b620SHong Zhang }
937a9d4b620SHong Zhang 
938a9d4b620SHong Zhang #undef __FUNCT__
939a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
940dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
941a9d4b620SHong Zhang {
942a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
943dfbe8321SBarry Smith   PetscErrorCode ierr;
944a30f8f8cSSatish Balay 
945a30f8f8cSSatish Balay   PetscFunctionBegin;
946ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
947b941877fSHong Zhang   /* do diagonal part */
948b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
949b941877fSHong Zhang   /* do supperdiagonal part */
950ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
951de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
952de8b6608SHong Zhang 
953b941877fSHong Zhang   /* do subdiagonal part */
954a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
955ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
956ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
957aa482183SHong Zhang 
958a30f8f8cSSatish Balay   PetscFunctionReturn(0);
959a30f8f8cSSatish Balay }
960a30f8f8cSSatish Balay 
961a30f8f8cSSatish Balay /*
962a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
963a30f8f8cSSatish Balay    diagonal block
964a30f8f8cSSatish Balay */
9654a2ae208SSatish Balay #undef __FUNCT__
9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
968a30f8f8cSSatish Balay {
969a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
970dfbe8321SBarry Smith   PetscErrorCode ierr;
971a30f8f8cSSatish Balay 
972a30f8f8cSSatish Balay   PetscFunctionBegin;
973d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
974a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
975a30f8f8cSSatish Balay   PetscFunctionReturn(0);
976a30f8f8cSSatish Balay }
977a30f8f8cSSatish Balay 
9784a2ae208SSatish Balay #undef __FUNCT__
9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
981a30f8f8cSSatish Balay {
982a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
983dfbe8321SBarry Smith   PetscErrorCode ierr;
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay   PetscFunctionBegin;
986f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
987f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
989a30f8f8cSSatish Balay }
990a30f8f8cSSatish Balay 
9914a2ae208SSatish Balay #undef __FUNCT__
9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
994a30f8f8cSSatish Balay {
995d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
996d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
997d0d4cfc2SHong Zhang   PetscErrorCode ierr;
998d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
999d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1000899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1001d0d4cfc2SHong Zhang 
1002a30f8f8cSSatish Balay   PetscFunctionBegin;
10034eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1004d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1005d0d4cfc2SHong Zhang 
1006d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1007d0d4cfc2SHong Zhang     /*
1008d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1009d0d4cfc2SHong Zhang     */
1010d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1011d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1012d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1013d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1014d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1015d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1016d0d4cfc2SHong Zhang     }
1017d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1018d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1019d0d4cfc2SHong Zhang   }
1020d0d4cfc2SHong Zhang 
1021d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1022d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1023d0d4cfc2SHong Zhang 
1024d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1025d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1026d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1027d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1028d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1029d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1030d0d4cfc2SHong Zhang 
1031d0d4cfc2SHong Zhang   cmap  = mat->garray;
1032d0d4cfc2SHong Zhang   if (v  || idx) {
1033d0d4cfc2SHong Zhang     if (nztot) {
1034d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1035d0d4cfc2SHong Zhang       PetscInt imark = -1;
1036d0d4cfc2SHong Zhang       if (v) {
1037d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1038d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1039d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1040d0d4cfc2SHong Zhang           else break;
1041d0d4cfc2SHong Zhang         }
1042d0d4cfc2SHong Zhang         imark = i;
1043d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1044d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1045d0d4cfc2SHong Zhang       }
1046d0d4cfc2SHong Zhang       if (idx) {
1047d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1048d0d4cfc2SHong Zhang         if (imark > -1) {
1049d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1050d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1051d0d4cfc2SHong Zhang           }
1052d0d4cfc2SHong Zhang         } else {
1053d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1054d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1055d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1056d0d4cfc2SHong Zhang             else break;
1057d0d4cfc2SHong Zhang           }
1058d0d4cfc2SHong Zhang           imark = i;
1059d0d4cfc2SHong Zhang         }
1060d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1061d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1062d0d4cfc2SHong Zhang       }
1063d0d4cfc2SHong Zhang     } else {
1064d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1065d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1066d0d4cfc2SHong Zhang     }
1067d0d4cfc2SHong Zhang   }
1068d0d4cfc2SHong Zhang   *nz = nztot;
1069d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1070d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1071a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1072a30f8f8cSSatish Balay }
1073a30f8f8cSSatish Balay 
10744a2ae208SSatish Balay #undef __FUNCT__
10754a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10761302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1077a30f8f8cSSatish Balay {
1078a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1079a30f8f8cSSatish Balay 
1080a30f8f8cSSatish Balay   PetscFunctionBegin;
1081abc0a331SBarry Smith   if (!baij->getrowactive) {
1082abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1083a30f8f8cSSatish Balay   }
1084a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1085a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1086a30f8f8cSSatish Balay }
1087a30f8f8cSSatish Balay 
10884a2ae208SSatish Balay #undef __FUNCT__
1089d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1090d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1091d0d4cfc2SHong Zhang {
1092d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1093d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1094d0d4cfc2SHong Zhang 
1095d0d4cfc2SHong Zhang   PetscFunctionBegin;
1096d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1097d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1098d0d4cfc2SHong Zhang }
1099d0d4cfc2SHong Zhang #undef __FUNCT__
1100d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1101d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1102d0d4cfc2SHong Zhang {
1103d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1104d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1105d0d4cfc2SHong Zhang 
1106d0d4cfc2SHong Zhang   PetscFunctionBegin;
1107d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1108d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1109d0d4cfc2SHong Zhang }
1110d0d4cfc2SHong Zhang 
1111d0d4cfc2SHong Zhang #undef __FUNCT__
111299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
111399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111499cafbc1SBarry Smith {
111599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111699cafbc1SBarry Smith   PetscErrorCode ierr;
111799cafbc1SBarry Smith 
111899cafbc1SBarry Smith   PetscFunctionBegin;
111999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
112099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
112199cafbc1SBarry Smith   PetscFunctionReturn(0);
112299cafbc1SBarry Smith }
112399cafbc1SBarry Smith 
112499cafbc1SBarry Smith #undef __FUNCT__
112599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112799cafbc1SBarry Smith {
112899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112999cafbc1SBarry Smith   PetscErrorCode ierr;
113099cafbc1SBarry Smith 
113199cafbc1SBarry Smith   PetscFunctionBegin;
113299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
113399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113499cafbc1SBarry Smith   PetscFunctionReturn(0);
113599cafbc1SBarry Smith }
113699cafbc1SBarry Smith 
113799cafbc1SBarry Smith #undef __FUNCT__
11384a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1139dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1140a30f8f8cSSatish Balay {
1141a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1142dfbe8321SBarry Smith   PetscErrorCode ierr;
1143a30f8f8cSSatish Balay 
1144a30f8f8cSSatish Balay   PetscFunctionBegin;
1145a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1146a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1147a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1148a30f8f8cSSatish Balay }
1149a30f8f8cSSatish Balay 
11504a2ae208SSatish Balay #undef __FUNCT__
11514a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1152dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1153a30f8f8cSSatish Balay {
1154a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1155a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1156dfbe8321SBarry Smith   PetscErrorCode ierr;
1157a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1158a30f8f8cSSatish Balay 
1159a30f8f8cSSatish Balay   PetscFunctionBegin;
1160d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1161a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1162a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1163a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1164a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1165a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1166a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1167a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1168a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1169a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1170a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1171a30f8f8cSSatish Balay     info->memory       = isend[3];
1172a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1173a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11747adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1175a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1176a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1177a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1178a30f8f8cSSatish Balay     info->memory       = irecv[3];
1179a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1180a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11817adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1182a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1183a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1184a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1185a30f8f8cSSatish Balay     info->memory       = irecv[3];
1186a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1187a30f8f8cSSatish Balay   } else {
118877431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1189a30f8f8cSSatish Balay   }
1190a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1191a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1192a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1193a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1194a30f8f8cSSatish Balay }
1195a30f8f8cSSatish Balay 
11964a2ae208SSatish Balay #undef __FUNCT__
11974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11984e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1199a30f8f8cSSatish Balay {
1200a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1201d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1202dfbe8321SBarry Smith   PetscErrorCode ierr;
1203a30f8f8cSSatish Balay 
1204a30f8f8cSSatish Balay   PetscFunctionBegin;
1205e98b92d7SKris Buschelman   switch (op) {
1206512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1207e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1209a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1210e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12114e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12124e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12154e0d8c25SBarry Smith     a->roworiented = flg;
12164e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12174e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1218e98b92d7SKris Buschelman     break;
12194e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1220290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1221e98b92d7SKris Buschelman     break;
1222e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12234e0d8c25SBarry Smith     a->donotstash = flg;
1224e98b92d7SKris Buschelman     break;
1225e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12264e0d8c25SBarry Smith     a->ht_flag = flg;
1227e98b92d7SKris Buschelman     break;
12289a4540c5SBarry Smith   case MAT_HERMITIAN:
1229547795f9SHong Zhang     if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1230eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1231547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1232eeffb40dSHong Zhang     break;
123377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1234eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1235eeffb40dSHong Zhang     break;
123677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1237eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1238eeffb40dSHong Zhang     break;
12399a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12404e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1241290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124277e54ba9SKris Buschelman     break;
1243d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12444e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1245d0d4cfc2SHong Zhang     break;
1246d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12474e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1248d0d4cfc2SHong Zhang     break;
1249d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12504e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1251d0d4cfc2SHong Zhang     break;
1252e98b92d7SKris Buschelman   default:
1253ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1254a30f8f8cSSatish Balay   }
1255a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1256a30f8f8cSSatish Balay }
1257a30f8f8cSSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12598115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1260fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1261a30f8f8cSSatish Balay {
1262dfbe8321SBarry Smith   PetscErrorCode ierr;
1263a30f8f8cSSatish Balay   PetscFunctionBegin;
1264815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1265999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1266fc4dec0aSBarry Smith   }
12678115998fSBarry Smith   PetscFunctionReturn(0);
1268a30f8f8cSSatish Balay }
1269a30f8f8cSSatish Balay 
12704a2ae208SSatish Balay #undef __FUNCT__
12714a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1272dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1273a30f8f8cSSatish Balay {
1274a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1275a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1276dfbe8321SBarry Smith   PetscErrorCode ierr;
12775e90f9d9SHong Zhang   PetscInt       nv,m,n;
1278b3bf805bSHong Zhang   PetscTruth     flg;
1279a30f8f8cSSatish Balay 
1280a30f8f8cSSatish Balay   PetscFunctionBegin;
1281a30f8f8cSSatish Balay   if (ll != rr){
1282b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1283b3bf805bSHong Zhang     if (!flg)
128429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1285a30f8f8cSSatish Balay   }
1286b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1287b3bf805bSHong Zhang 
12885e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12895e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1290b3bf805bSHong Zhang 
12915e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12925e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12935e90f9d9SHong Zhang 
1294ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12955e90f9d9SHong Zhang 
12965e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1297a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12985e90f9d9SHong Zhang 
12995e90f9d9SHong Zhang   /* scale the diagonal part */
1300a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1301a30f8f8cSSatish Balay 
13025e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1303ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1304a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1306a30f8f8cSSatish Balay }
1307a30f8f8cSSatish Balay 
13084a2ae208SSatish Balay #undef __FUNCT__
13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1311a30f8f8cSSatish Balay {
1312f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1313dfbe8321SBarry Smith   PetscErrorCode ierr;
1314a30f8f8cSSatish Balay 
1315a30f8f8cSSatish Balay   PetscFunctionBegin;
1316a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1317a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1318a30f8f8cSSatish Balay }
1319a30f8f8cSSatish Balay 
13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1321a30f8f8cSSatish Balay 
13224a2ae208SSatish Balay #undef __FUNCT__
13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1324dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1325a30f8f8cSSatish Balay {
1326a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1327a30f8f8cSSatish Balay   Mat            a,b,c,d;
1328a30f8f8cSSatish Balay   PetscTruth     flg;
1329dfbe8321SBarry Smith   PetscErrorCode ierr;
1330a30f8f8cSSatish Balay 
1331a30f8f8cSSatish Balay   PetscFunctionBegin;
1332a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1333a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1334a30f8f8cSSatish Balay 
1335a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1336abc0a331SBarry Smith   if (flg) {
1337a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay   }
13397adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1341a30f8f8cSSatish Balay }
1342a30f8f8cSSatish Balay 
13434a2ae208SSatish Balay #undef __FUNCT__
13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13463c896bc6SHong Zhang {
13473c896bc6SHong Zhang   PetscErrorCode ierr;
13483c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13493c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13503c896bc6SHong Zhang 
13513c896bc6SHong Zhang   PetscFunctionBegin;
13523c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13533c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1354d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13553c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1356d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang   } else {
13583c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13593c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13603c896bc6SHong Zhang   }
13613c896bc6SHong Zhang   PetscFunctionReturn(0);
13623c896bc6SHong Zhang }
13633c896bc6SHong Zhang 
13643c896bc6SHong Zhang #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1366dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1367273d9f13SBarry Smith {
1368dfbe8321SBarry Smith   PetscErrorCode ierr;
1369273d9f13SBarry Smith 
1370273d9f13SBarry Smith   PetscFunctionBegin;
1371db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1372273d9f13SBarry Smith   PetscFunctionReturn(0);
1373273d9f13SBarry Smith }
1374a5e6ed63SBarry Smith 
13754fe895cdSHong Zhang #include "petscblaslapack.h"
13764fe895cdSHong Zhang #undef __FUNCT__
13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13794fe895cdSHong Zhang {
13804fe895cdSHong Zhang   PetscErrorCode ierr;
13814fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13824fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13834fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13844fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13854fe895cdSHong Zhang 
13864fe895cdSHong Zhang   PetscFunctionBegin;
13874fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13884fe895cdSHong Zhang     PetscScalar alpha = a;
13894fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13904fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13910805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13934fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13944fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13950805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13964fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13974fe895cdSHong Zhang   } else {
1398d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13994fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1400d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang   }
14024fe895cdSHong Zhang   PetscFunctionReturn(0);
14034fe895cdSHong Zhang }
14044fe895cdSHong Zhang 
1405a5e6ed63SBarry Smith #undef __FUNCT__
1406*6363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
1407*6363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
1408*6363de48SJed Brown {
1409*6363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1410*6363de48SJed Brown   PetscInt        rbs,cbs;
1411*6363de48SJed Brown   PetscErrorCode  ierr;
1412*6363de48SJed Brown 
1413*6363de48SJed Brown   PetscFunctionBegin;
1414*6363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
1415*6363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
1416*6363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
1417*6363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1418*6363de48SJed Brown   if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1419*6363de48SJed Brown   if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
1420*6363de48SJed Brown   PetscFunctionReturn(0);
1421*6363de48SJed Brown }
1422*6363de48SJed Brown 
1423*6363de48SJed Brown #undef __FUNCT__
1424a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14251302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1426a5e6ed63SBarry Smith {
14276849ba73SBarry Smith   PetscErrorCode ierr;
14281302d50aSBarry Smith   PetscInt       i;
1429a5e6ed63SBarry Smith   PetscTruth     flg;
1430a5e6ed63SBarry Smith 
14316849ba73SBarry Smith   PetscFunctionBegin;
1432a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1433a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1434a5e6ed63SBarry Smith     if (!flg) {
14351302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1436a5e6ed63SBarry Smith     }
1437a5e6ed63SBarry Smith   }
1438a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1439a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1440a5e6ed63SBarry Smith }
1441a5e6ed63SBarry Smith 
1442a5e6ed63SBarry Smith 
1443a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1444a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1445a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1446a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1447a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1448a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1450431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1451431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1452a30f8f8cSSatish Balay        0,
1453a30f8f8cSSatish Balay        0,
1454a30f8f8cSSatish Balay        0,
145597304618SKris Buschelman /*10*/ 0,
1456a30f8f8cSSatish Balay        0,
1457a30f8f8cSSatish Balay        0,
145841f059aeSBarry Smith        MatSOR_MPISBAIJ,
1459a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
146097304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1463a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1467a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1468a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1469d519adbfSMatthew Knepley /*24*/ 0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
1472a30f8f8cSSatish Balay        0,
1473a30f8f8cSSatish Balay        0,
1474d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1475b5df2d14SHong Zhang        0,
1476a30f8f8cSSatish Balay        0,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        0,
1484d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1485a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1486d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1487a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14883c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1489d519adbfSMatthew Knepley /*44*/ 0,
1490a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1491a30f8f8cSSatish Balay        0,
1492a30f8f8cSSatish Balay        0,
1493a30f8f8cSSatish Balay        0,
1494*6363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        0,
1499d519adbfSMatthew Knepley /*54*/ 0,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1502a30f8f8cSSatish Balay        0,
1503a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1504d519adbfSMatthew Knepley /*59*/ 0,
1505a30f8f8cSSatish Balay        0,
1506a30f8f8cSSatish Balay        0,
1507357abbc8SBarry Smith        0,
150824d5174aSHong Zhang        0,
1509d519adbfSMatthew Knepley /*64*/ 0,
151024d5174aSHong Zhang        0,
151124d5174aSHong Zhang        0,
151224d5174aSHong Zhang        0,
151324d5174aSHong Zhang        0,
1514d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151524d5174aSHong Zhang        0,
151697304618SKris Buschelman        0,
151797304618SKris Buschelman        0,
151897304618SKris Buschelman        0,
1519d519adbfSMatthew Knepley /*74*/ 0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman        0,
152297304618SKris Buschelman        0,
152397304618SKris Buschelman        0,
1524d519adbfSMatthew Knepley /*79*/ 0,
152597304618SKris Buschelman        0,
152697304618SKris Buschelman        0,
152797304618SKris Buschelman        0,
1528865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1529d519adbfSMatthew Knepley /*84*/ 0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman        0,
1532865e5f61SKris Buschelman        0,
1533865e5f61SKris Buschelman        0,
1534d519adbfSMatthew Knepley /*89*/ 0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman        0,
1537865e5f61SKris Buschelman        0,
1538865e5f61SKris Buschelman        0,
1539d519adbfSMatthew Knepley /*94*/ 0,
1540865e5f61SKris Buschelman        0,
1541865e5f61SKris Buschelman        0,
154299cafbc1SBarry Smith        0,
154399cafbc1SBarry Smith        0,
1544d519adbfSMatthew Knepley /*99*/ 0,
154599cafbc1SBarry Smith        0,
154699cafbc1SBarry Smith        0,
154799cafbc1SBarry Smith        0,
154899cafbc1SBarry Smith        0,
1549d519adbfSMatthew Knepley /*104*/0,
155099cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1551d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1552d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1553d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
155499cafbc1SBarry Smith };
1555a30f8f8cSSatish Balay 
1556a30f8f8cSSatish Balay 
1557a30f8f8cSSatish Balay EXTERN_C_BEGIN
15584a2ae208SSatish Balay #undef __FUNCT__
15594a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1560be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1561a30f8f8cSSatish Balay {
1562a30f8f8cSSatish Balay   PetscFunctionBegin;
1563a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1564a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1565a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1566a30f8f8cSSatish Balay }
1567a30f8f8cSSatish Balay EXTERN_C_END
1568a30f8f8cSSatish Balay 
1569273d9f13SBarry Smith EXTERN_C_BEGIN
15704a2ae208SSatish Balay #undef __FUNCT__
1571a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1572be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1573a23d5eceSKris Buschelman {
1574a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1575dfbe8321SBarry Smith   PetscErrorCode ierr;
1576db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1577a23d5eceSKris Buschelman 
1578a23d5eceSKris Buschelman   PetscFunctionBegin;
1579db4efbfdSBarry Smith   if (bs < 0){
15807adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1581db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15828c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1583db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1584db4efbfdSBarry Smith   }
1585db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1586db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1587db4efbfdSBarry Smith   }
1588db4efbfdSBarry Smith   bs = newbs;
1589a23d5eceSKris Buschelman 
1590a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1591a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
159277431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
159377431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1594899cda47SBarry Smith 
1595d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
159626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1598899cda47SBarry Smith 
1599a23d5eceSKris Buschelman   if (d_nnz) {
1600d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160177431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1602a23d5eceSKris Buschelman     }
1603a23d5eceSKris Buschelman   }
1604a23d5eceSKris Buschelman   if (o_nnz) {
1605d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160677431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1607a23d5eceSKris Buschelman     }
1608a23d5eceSKris Buschelman   }
1609a23d5eceSKris Buschelman 
1610a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1611d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1612d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1613d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1614d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1615a23d5eceSKris Buschelman   }
1616a23d5eceSKris Buschelman 
1617d0f46423SBarry Smith   B->rmap->bs  = bs;
1618a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1619a23d5eceSKris Buschelman   b->mbs = mbs;
1620a23d5eceSKris Buschelman   b->nbs = mbs;
1621a23d5eceSKris Buschelman   b->Mbs = Mbs;
1622a23d5eceSKris Buschelman   b->Nbs = Mbs;
1623a23d5eceSKris Buschelman 
1624a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1625d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1626a23d5eceSKris Buschelman   }
1627d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1628d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1629a23d5eceSKris Buschelman 
1630d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1631d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1632a23d5eceSKris Buschelman 
1633526dfc15SBarry Smith   if (!B->preallocated) {
1634f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1635d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16369c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163752e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1638f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1639d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16404aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164152e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1642a23d5eceSKris Buschelman     /* build cache for off array entries formed */
16437adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1644526dfc15SBarry Smith   }
1645a23d5eceSKris Buschelman 
1646526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1647526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1648526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1649a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1650a23d5eceSKris Buschelman }
1651a23d5eceSKris Buschelman EXTERN_C_END
1652a23d5eceSKris Buschelman 
16535c9eb25fSBarry Smith EXTERN_C_BEGIN
1654611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1655611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1656611f576cSBarry Smith #endif
1657611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16585c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1659611f576cSBarry Smith #endif
1660b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1661b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1662b5e56a35SBarry Smith #endif
16635c9eb25fSBarry Smith EXTERN_C_END
16645c9eb25fSBarry Smith 
16650bad9183SKris Buschelman /*MC
1666fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16670bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16680bad9183SKris Buschelman 
16690bad9183SKris Buschelman    Options Database Keys:
16700bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16710bad9183SKris Buschelman 
16720bad9183SKris Buschelman   Level: beginner
16730bad9183SKris Buschelman 
16740bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16750bad9183SKris Buschelman M*/
16760bad9183SKris Buschelman 
1677a23d5eceSKris Buschelman EXTERN_C_BEGIN
1678a23d5eceSKris Buschelman #undef __FUNCT__
16794a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1680be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1681b5df2d14SHong Zhang {
1682b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1683dfbe8321SBarry Smith   PetscErrorCode ierr;
1684b5df2d14SHong Zhang   PetscTruth     flg;
1685b5df2d14SHong Zhang 
1686b5df2d14SHong Zhang   PetscFunctionBegin;
1687b5df2d14SHong Zhang 
168838f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1689b0a32e0cSBarry Smith   B->data = (void*)b;
1690b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1691b5df2d14SHong Zhang 
1692b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1693b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1694b5df2d14SHong Zhang   B->mapping         = 0;
1695b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1696b5df2d14SHong Zhang 
1697b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16987adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16997adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1700b5df2d14SHong Zhang 
1701b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1702899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1703b5df2d14SHong Zhang 
1704b5df2d14SHong Zhang   /* build cache for off array entries formed */
17057adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1706b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1707b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1708b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1709b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* stuff used in block assembly */
1712b5df2d14SHong Zhang   b->barray       = 0;
1713b5df2d14SHong Zhang 
1714b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1715b5df2d14SHong Zhang   b->lvec         = 0;
1716b5df2d14SHong Zhang   b->Mvctx        = 0;
171740781036SHong Zhang   b->slvec0       = 0;
171840781036SHong Zhang   b->slvec0b      = 0;
171940781036SHong Zhang   b->slvec1       = 0;
172040781036SHong Zhang   b->slvec1a      = 0;
172140781036SHong Zhang   b->slvec1b      = 0;
172240781036SHong Zhang   b->sMvctx       = 0;
1723b5df2d14SHong Zhang 
1724b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1725b5df2d14SHong Zhang   b->rowindices   = 0;
1726b5df2d14SHong Zhang   b->rowvalues    = 0;
1727b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang   /* hash table stuff */
1730b5df2d14SHong Zhang   b->ht           = 0;
1731b5df2d14SHong Zhang   b->hd           = 0;
1732b5df2d14SHong Zhang   b->ht_size      = 0;
1733b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1734b5df2d14SHong Zhang   b->ht_fact      = 0;
1735b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1736b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1737b5df2d14SHong Zhang 
173859ffdab8SBarry Smith   b->in_loc       = 0;
173959ffdab8SBarry Smith   b->v_loc        = 0;
174059ffdab8SBarry Smith   b->n_loc        = 0;
17417adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17428c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1743b5df2d14SHong Zhang     if (flg) {
1744f6275e2eSBarry Smith       PetscReal fact = 1.39;
17454e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17468c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1747b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1748b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17491e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1750b5df2d14SHong Zhang     }
17518c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17528c07d4e3SBarry Smith 
1753b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1754ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1755b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1756b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1757b5e56a35SBarry Smith #endif
1758611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1759ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17605c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17615c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1762611f576cSBarry Smith #endif
1763611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1764ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17655c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17665c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1767611f576cSBarry Smith #endif
1768b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1769b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1770b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1771b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1772b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1773b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1774b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1775b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1776b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1777a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1778a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1779a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
178023ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
178123ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178223ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178323ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1785b5df2d14SHong Zhang   PetscFunctionReturn(0);
1786b5df2d14SHong Zhang }
1787273d9f13SBarry Smith EXTERN_C_END
1788b5df2d14SHong Zhang 
1789209238afSKris Buschelman /*MC
1790002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1791209238afSKris Buschelman 
1792209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1793209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1794209238afSKris Buschelman 
1795209238afSKris Buschelman    Options Database Keys:
1796209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1797209238afSKris Buschelman 
1798209238afSKris Buschelman   Level: beginner
1799209238afSKris Buschelman 
1800209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1801209238afSKris Buschelman M*/
1802209238afSKris Buschelman 
1803209238afSKris Buschelman EXTERN_C_BEGIN
1804209238afSKris Buschelman #undef __FUNCT__
1805209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1806be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1807dfbe8321SBarry Smith {
18086849ba73SBarry Smith   PetscErrorCode ierr;
18091302d50aSBarry Smith   PetscMPIInt    size;
1810209238afSKris Buschelman 
1811209238afSKris Buschelman   PetscFunctionBegin;
18127adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1813209238afSKris Buschelman   if (size == 1) {
1814209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1815209238afSKris Buschelman   } else {
1816209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1817209238afSKris Buschelman   }
1818209238afSKris Buschelman   PetscFunctionReturn(0);
1819209238afSKris Buschelman }
1820209238afSKris Buschelman EXTERN_C_END
1821209238afSKris Buschelman 
18224a2ae208SSatish Balay #undef __FUNCT__
18234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1824b5df2d14SHong Zhang /*@C
1825b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1826b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1827b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1828b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Collective on Mat
1831b5df2d14SHong Zhang 
1832b5df2d14SHong Zhang    Input Parameters:
1833b5df2d14SHong Zhang +  A - the matrix
1834b5df2d14SHong Zhang .  bs   - size of blockk
1835b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1836b5df2d14SHong Zhang            submatrix  (same for all local rows)
1837b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18386d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18396d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18406d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1841b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1842b5df2d14SHong Zhang            submatrix (same for all local rows).
1843b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1844b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1845b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1846b5df2d14SHong Zhang 
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang    Options Database Keys:
1849b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1850b5df2d14SHong Zhang                      block calculations (much slower)
1851b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    Notes:
1854b5df2d14SHong Zhang 
1855b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1856b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1857b5df2d14SHong Zhang 
185849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
185949a6f317SBarry Smith 
1860b5df2d14SHong Zhang    Storage Information:
1861b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1862b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1863b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1864b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1865b5df2d14SHong Zhang 
1866b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1867b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1868b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1869b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1870b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1871b5df2d14SHong Zhang 
1872aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1873aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1874aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1875aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1876aa95bbe8SBarry Smith 
1877b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1878b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1879b5df2d14SHong Zhang 
1880b5df2d14SHong Zhang .vb
1881b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1882b5df2d14SHong Zhang           -------------------
1883b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1884b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1885b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1886b5df2d14SHong Zhang           -------------------
1887b5df2d14SHong Zhang .ve
1888b5df2d14SHong Zhang 
1889b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1890b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18916d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18926d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1893b5df2d14SHong Zhang 
18946d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18956d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1896b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1897b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1898b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1899b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1900b5df2d14SHong Zhang    matrices.
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang    Level: intermediate
1903b5df2d14SHong Zhang 
1904b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1905b5df2d14SHong Zhang 
1906b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1907b5df2d14SHong Zhang @*/
1908be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1909b5df2d14SHong Zhang {
19101302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1911b5df2d14SHong Zhang 
1912b5df2d14SHong Zhang   PetscFunctionBegin;
1913a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1914a23d5eceSKris Buschelman   if (f) {
1915a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1916b5df2d14SHong Zhang   }
1917b5df2d14SHong Zhang   PetscFunctionReturn(0);
1918b5df2d14SHong Zhang }
1919b5df2d14SHong Zhang 
19204a2ae208SSatish Balay #undef __FUNCT__
19214a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1922a30f8f8cSSatish Balay /*@C
1923a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1924a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1925a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1926a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1927a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay    Collective on MPI_Comm
1930a30f8f8cSSatish Balay 
1931a30f8f8cSSatish Balay    Input Parameters:
1932a30f8f8cSSatish Balay +  comm - MPI communicator
1933a30f8f8cSSatish Balay .  bs   - size of blockk
1934a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1935a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1936a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1937a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1938a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1939a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1940a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1941a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1942a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1943a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1944a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19456d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19466d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19476d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1948a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1949a30f8f8cSSatish Balay            submatrix (same for all local rows).
1950a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1951a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1952a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1953a30f8f8cSSatish Balay 
1954a30f8f8cSSatish Balay    Output Parameter:
1955a30f8f8cSSatish Balay .  A - the matrix
1956a30f8f8cSSatish Balay 
1957a30f8f8cSSatish Balay    Options Database Keys:
1958a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1959a30f8f8cSSatish Balay                      block calculations (much slower)
1960a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1961a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1962a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1963a30f8f8cSSatish Balay 
1964175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1965ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1966175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1967175b88e8SBarry Smith 
1968a30f8f8cSSatish Balay    Notes:
1969d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19706d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1971d1be2dadSMatthew Knepley 
1972a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1973a30f8f8cSSatish Balay    (possibly both).
1974a30f8f8cSSatish Balay 
1975a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1976a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1977a30f8f8cSSatish Balay 
197849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197949a6f317SBarry Smith 
1980a30f8f8cSSatish Balay    Storage Information:
1981a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1982a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1983a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1984a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1987a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1988a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1989a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1990a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1993a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1994a30f8f8cSSatish Balay 
1995a30f8f8cSSatish Balay .vb
1996a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1997a30f8f8cSSatish Balay           -------------------
1998a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1999a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2000a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2001a30f8f8cSSatish Balay           -------------------
2002a30f8f8cSSatish Balay .ve
2003a30f8f8cSSatish Balay 
2004a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2005a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20066d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20076d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2008a30f8f8cSSatish Balay 
20096d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20106d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2011a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2012a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2013a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2014a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2015a30f8f8cSSatish Balay    matrices.
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay    Level: intermediate
2018a30f8f8cSSatish Balay 
2019a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2020a30f8f8cSSatish Balay 
2021a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2022a30f8f8cSSatish Balay @*/
2023a30f8f8cSSatish Balay 
2024be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2025a30f8f8cSSatish Balay {
20266849ba73SBarry Smith   PetscErrorCode ierr;
20271302d50aSBarry Smith   PetscMPIInt    size;
2028a30f8f8cSSatish Balay 
2029a30f8f8cSSatish Balay   PetscFunctionBegin;
2030f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2031f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2032273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2033273d9f13SBarry Smith   if (size > 1) {
2034b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2035b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2036273d9f13SBarry Smith   } else {
2037273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2038273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2039273d9f13SBarry Smith   }
2040a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2041a30f8f8cSSatish Balay }
2042a30f8f8cSSatish Balay 
2043a30f8f8cSSatish Balay 
20444a2ae208SSatish Balay #undef __FUNCT__
20454a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20466849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2047a30f8f8cSSatish Balay {
2048a30f8f8cSSatish Balay   Mat            mat;
2049a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2050dfbe8321SBarry Smith   PetscErrorCode ierr;
2051d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2052387bc808SHong Zhang   PetscScalar    *array;
2053a30f8f8cSSatish Balay 
2054a30f8f8cSSatish Balay   PetscFunctionBegin;
2055a30f8f8cSSatish Balay   *newmat       = 0;
20567adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2057d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20587adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20591d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
206026283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
206126283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2062e1b6402fSHong Zhang 
206382327fa8SHong Zhang   mat->factor       = matin->factor;
2064273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20667fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20677fff6886SHong Zhang 
2068b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2069a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2070a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2071a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2072a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2073a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2074a30f8f8cSSatish Balay 
2075899cda47SBarry Smith 
2076a30f8f8cSSatish Balay   a->size         = oldmat->size;
2077a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2078a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2079a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2080a30f8f8cSSatish Balay   a->rowindices   = 0;
2081a30f8f8cSSatish Balay   a->rowvalues    = 0;
2082a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2083a30f8f8cSSatish Balay   a->barray       = 0;
2084899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2085899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2086899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2087899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2088a30f8f8cSSatish Balay 
2089a30f8f8cSSatish Balay   /* hash table stuff */
2090a30f8f8cSSatish Balay   a->ht           = 0;
2091a30f8f8cSSatish Balay   a->hd           = 0;
2092a30f8f8cSSatish Balay   a->ht_size      = 0;
2093a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2094a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2095a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2096a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2097a30f8f8cSSatish Balay 
2098899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
20997adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
2100d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   if (oldmat->colmap) {
2102a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2103a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2104a30f8f8cSSatish Balay #else
21051302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21071302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2108a30f8f8cSSatish Balay #endif
2109a30f8f8cSSatish Balay   } else a->colmap = 0;
2110387bc808SHong Zhang 
2111a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21121302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
211352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21141302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2115a30f8f8cSSatish Balay   } else a->garray = 0;
2116a30f8f8cSSatish Balay 
2117a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2119a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
212182327fa8SHong Zhang 
212282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2126387bc808SHong Zhang 
2127387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21281ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2129387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2130387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21321ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2133387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21341ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
213852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2140387bc808SHong Zhang 
2141387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2142387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2143387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214582327fa8SHong Zhang 
2146a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21507adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay   *newmat = mat;
2152a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2153a30f8f8cSSatish Balay }
2154a30f8f8cSSatish Balay 
2155a30f8f8cSSatish Balay #include "petscsys.h"
2156a30f8f8cSSatish Balay 
21574a2ae208SSatish Balay #undef __FUNCT__
21584a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2159a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2160a30f8f8cSSatish Balay {
2161a30f8f8cSSatish Balay   Mat            A;
21626849ba73SBarry Smith   PetscErrorCode ierr;
216313f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216487828ca2SBarry Smith   PetscScalar    *vals,*buf;
2165a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2166a30f8f8cSSatish Balay   MPI_Status     status;
2167e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
216813f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21692fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21701302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21711302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21721302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217313f74950SBarry Smith   int            fd;
2174a30f8f8cSSatish Balay 
2175a30f8f8cSSatish Balay   PetscFunctionBegin;
217677925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21778c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21788c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2179a30f8f8cSSatish Balay 
2180a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2181a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   if (!rank) {
2183b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2184a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2185552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2186a30f8f8cSSatish Balay     if (header[3] < 0) {
218729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2188a30f8f8cSSatish Balay     }
2189a30f8f8cSSatish Balay   }
2190a30f8f8cSSatish Balay 
2191a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2193a30f8f8cSSatish Balay 
219429bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2195a30f8f8cSSatish Balay 
2196a30f8f8cSSatish Balay   /*
2197a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2198a30f8f8cSSatish Balay      divisible by the blocksize
2199a30f8f8cSSatish Balay   */
2200a30f8f8cSSatish Balay   Mbs        = M/bs;
2201a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2202a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2203a30f8f8cSSatish Balay   else                  Mbs++;
2204a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
22051e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2206a30f8f8cSSatish Balay   }
2207a30f8f8cSSatish Balay 
2208a30f8f8cSSatish Balay   /* determine ownership of all rows */
2209a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2210a30f8f8cSSatish Balay   m          = mbs*bs;
2211a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2213e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2214e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay   rowners[0] = 0;
2216a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2217a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2218a30f8f8cSSatish Balay   rstart = rowners[rank];
2219a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2220a30f8f8cSSatish Balay 
2221a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22222fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay   if (!rank) {
22241302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2227a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2229a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay   } else {
2232a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2233a30f8f8cSSatish Balay   }
2234a30f8f8cSSatish Balay 
22350222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2236a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22371302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22381302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2239a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2240a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2241a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2242a30f8f8cSSatish Balay       }
2243a30f8f8cSSatish Balay     }
2244a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2245a30f8f8cSSatish Balay 
2246a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2247a30f8f8cSSatish Balay     maxnz = 0;
2248a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2249a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2250a30f8f8cSSatish Balay     }
22511302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay 
2253a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2254a30f8f8cSSatish Balay     nz     = procsnz[0];
22551302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     mycols = ibuf;
2257a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2258a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2259a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2260a30f8f8cSSatish Balay 
2261a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2262a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2263a30f8f8cSSatish Balay       nz   = procsnz[i];
2264a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2265a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay     }
2267a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2268a30f8f8cSSatish Balay     if (size != 1) {
2269a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2270a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2271a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2272a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2273a30f8f8cSSatish Balay     }
2274a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22750222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2276a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2277a30f8f8cSSatish Balay     nz = 0;
2278a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2279a30f8f8cSSatish Balay       nz += locrowlens[i];
2280a30f8f8cSSatish Balay     }
22811302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2282a30f8f8cSSatish Balay     mycols = ibuf;
2283a30f8f8cSSatish Balay     /* receive message of column indices*/
2284a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2285a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2287a30f8f8cSSatish Balay   }
2288a30f8f8cSSatish Balay 
2289a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22901302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2291a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22921302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22931302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2294a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2295a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2296a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2297a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2298a30f8f8cSSatish Balay     dcount  = 0;
2299a30f8f8cSSatish Balay     odcount = 0;
2300a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2301a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2302a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23030222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2304a30f8f8cSSatish Balay         if (!mask[tmp]) {
2305a30f8f8cSSatish Balay           mask[tmp] = 1;
23060222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23070222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2308a30f8f8cSSatish Balay         }
2309a30f8f8cSSatish Balay       }
2310a30f8f8cSSatish Balay       rowcount++;
2311a30f8f8cSSatish Balay     }
2312a30f8f8cSSatish Balay 
23130222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23140222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2315a30f8f8cSSatish Balay 
2316a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2317a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2318a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2319a30f8f8cSSatish Balay   }
2320a30f8f8cSSatish Balay 
2321a30f8f8cSSatish Balay   /* create our matrix */
2322f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2323f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
232422191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232517fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
232622191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay   if (!rank) {
232987828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2330a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2331a30f8f8cSSatish Balay     nz = procsnz[0];
2332a30f8f8cSSatish Balay     vals = buf;
2333a30f8f8cSSatish Balay     mycols = ibuf;
2334a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2335a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2336a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2337a30f8f8cSSatish Balay 
2338a30f8f8cSSatish Balay     /* insert into matrix */
2339a30f8f8cSSatish Balay     jj      = rstart*bs;
2340a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23417e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2342a30f8f8cSSatish Balay       mycols += locrowlens[i];
2343a30f8f8cSSatish Balay       vals   += locrowlens[i];
2344a30f8f8cSSatish Balay       jj++;
2345a30f8f8cSSatish Balay     }
23467e06b45fSHong Zhang 
2347a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2348a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2349a30f8f8cSSatish Balay       nz   = procsnz[i];
2350a30f8f8cSSatish Balay       vals = buf;
2351a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23527adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2353a30f8f8cSSatish Balay     }
2354a30f8f8cSSatish Balay     /* the last proc */
2355a30f8f8cSSatish Balay     if (size != 1){
2356a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2357a30f8f8cSSatish Balay       vals = buf;
2358a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2359a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23607adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2361a30f8f8cSSatish Balay     }
2362a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23637e06b45fSHong Zhang 
2364a30f8f8cSSatish Balay   } else {
2365a30f8f8cSSatish Balay     /* receive numeric values */
236687828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2367a30f8f8cSSatish Balay 
2368a30f8f8cSSatish Balay     /* receive message of values*/
2369a30f8f8cSSatish Balay     vals   = buf;
2370a30f8f8cSSatish Balay     mycols = ibuf;
23717adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2372a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2374a30f8f8cSSatish Balay 
2375a30f8f8cSSatish Balay     /* insert into matrix */
2376a30f8f8cSSatish Balay     jj      = rstart*bs;
2377a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2378a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2379a30f8f8cSSatish Balay       mycols += locrowlens[i];
2380a30f8f8cSSatish Balay       vals   += locrowlens[i];
2381a30f8f8cSSatish Balay       jj++;
2382a30f8f8cSSatish Balay     }
2383a30f8f8cSSatish Balay   }
23847e06b45fSHong Zhang 
2385a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2387a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2389a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2390a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2391a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2392a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239322191285SKris Buschelman   *newmat = A;
2394a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2395a30f8f8cSSatish Balay }
2396a30f8f8cSSatish Balay 
23974a2ae208SSatish Balay #undef __FUNCT__
23984a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2399dcf5cc72SBarry Smith /*XXXXX@
2400a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2401a30f8f8cSSatish Balay 
2402a30f8f8cSSatish Balay    Input Parameters:
2403a30f8f8cSSatish Balay .  mat  - the matrix
2404a30f8f8cSSatish Balay .  fact - factor
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay    Collective on Mat
2407a30f8f8cSSatish Balay 
2408a30f8f8cSSatish Balay    Level: advanced
2409a30f8f8cSSatish Balay 
2410a30f8f8cSSatish Balay   Notes:
2411a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2412a30f8f8cSSatish Balay 
2413a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2414a30f8f8cSSatish Balay 
2415a30f8f8cSSatish Balay .seealso: MatSetOption()
2416dcf5cc72SBarry Smith @XXXXX*/
2417dcf5cc72SBarry Smith 
241824d5174aSHong Zhang 
24194a2ae208SSatish Balay #undef __FUNCT__
2420985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2421985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
242224d5174aSHong Zhang {
242324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2424f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2425ca54ac64SHong Zhang   PetscReal      atmp;
242687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2427dfbe8321SBarry Smith   PetscErrorCode ierr;
24281302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24291302d50aSBarry Smith   PetscMPIInt    rank,size;
24301302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
243187828ca2SBarry Smith   PetscScalar    *va;
24328a1c53f2SBarry Smith   MatScalar      *ba;
2433f4c0e9e4SHong Zhang   MPI_Status     stat;
243424d5174aSHong Zhang 
243524d5174aSHong Zhang   PetscFunctionBegin;
2436985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2437985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24381ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2439f4c0e9e4SHong Zhang 
24407adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24417adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2442f4c0e9e4SHong Zhang 
2443d0f46423SBarry Smith   bs   = A->rmap->bs;
2444f4c0e9e4SHong Zhang   mbs  = a->mbs;
2445f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2446f4c0e9e4SHong Zhang   ba   = b->a;
2447f4c0e9e4SHong Zhang   bi   = b->i;
2448f4c0e9e4SHong Zhang   bj   = b->j;
2449f4c0e9e4SHong Zhang 
2450f4c0e9e4SHong Zhang   /* find ownerships */
2451d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2452f4c0e9e4SHong Zhang 
2453f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245482502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2455ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2456f4c0e9e4SHong Zhang 
2457f4c0e9e4SHong Zhang   /* row_max for B */
2458b8475685SHong Zhang   if (rank != size-1){
2459f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2460f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2461f4c0e9e4SHong Zhang       brow  = bs*i;
2462f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2463f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2464f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2465ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246604d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2467f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2468f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2469ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2470ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2471f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2472f4c0e9e4SHong Zhang           }
2473f4c0e9e4SHong Zhang         }
2474f4c0e9e4SHong Zhang         bj++;
2475f4c0e9e4SHong Zhang       }
2476f4c0e9e4SHong Zhang     }
2477f4c0e9e4SHong Zhang 
2478f4c0e9e4SHong Zhang     /* send values to its owners */
2479f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2480f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2481ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24827adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2483ca54ac64SHong Zhang     }
2484f4c0e9e4SHong Zhang   }
2485f4c0e9e4SHong Zhang 
2486f4c0e9e4SHong Zhang   /* receive values */
2487ca54ac64SHong Zhang   if (rank){
2488f4c0e9e4SHong Zhang     rvalues = work;
2489ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2490f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24917adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2492f4c0e9e4SHong Zhang       /* process values */
2493f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2494ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2495f4c0e9e4SHong Zhang       }
2496f4c0e9e4SHong Zhang     }
2497ca54ac64SHong Zhang   }
2498f4c0e9e4SHong Zhang 
24991ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2500ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
250124d5174aSHong Zhang   PetscFunctionReturn(0);
250224d5174aSHong Zhang }
25032798e883SHong Zhang 
25042798e883SHong Zhang #undef __FUNCT__
250541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
250641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25072798e883SHong Zhang {
25082798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2509dfbe8321SBarry Smith   PetscErrorCode ierr;
2510d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2511fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2512ffe4fb16SHong Zhang   Vec            bb1;
2513ffe4fb16SHong Zhang 
2514ffe4fb16SHong Zhang   PetscFunctionBegin;
251577431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2516b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2517ffe4fb16SHong Zhang 
2518a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
251941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2520a2b30743SBarry Smith     PetscFunctionReturn(0);
2521a2b30743SBarry Smith   }
2522a2b30743SBarry Smith 
2523ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2524ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
252541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2526ffe4fb16SHong Zhang       its--;
2527ffe4fb16SHong Zhang     }
2528ffe4fb16SHong Zhang 
2529ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang     while (its--){
2531ffe4fb16SHong Zhang 
2532ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2533ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2534ffe4fb16SHong Zhang 
2535ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25361ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25371ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2538ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25391ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2540ffe4fb16SHong Zhang 
2541efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2542ffe4fb16SHong Zhang 
2543ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25441ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25451ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2546ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25471ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2548ffe4fb16SHong Zhang 
2549ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2550fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2551ffe4fb16SHong Zhang 
2552ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25531ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25541ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2555ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang 
2557ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2558ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2559ffe4fb16SHong Zhang 
2560ffe4fb16SHong Zhang       /* local diagonal sweep */
256141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2562ffe4fb16SHong Zhang     }
2563ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2564fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2566fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2568fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2569fa22f6d0SBarry Smith     Vec               xx1;
2570fa22f6d0SBarry Smith     PetscTruth        hasop;
257120f1ed55SBarry Smith     const PetscScalar *diag;
2572887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
257320f1ed55SBarry Smith     PetscInt          i,n;
2574fa22f6d0SBarry Smith 
2575fa22f6d0SBarry Smith     if (!mat->xx1) {
2576fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2577fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2578fa22f6d0SBarry Smith     }
2579fa22f6d0SBarry Smith     xx1 = mat->xx1;
2580fa22f6d0SBarry Smith     bb1 = mat->bb1;
2581fa22f6d0SBarry Smith 
258241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2583fa22f6d0SBarry Smith 
2584fa22f6d0SBarry Smith     if (!mat->diag) {
2585effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2586fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2587fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2588fa22f6d0SBarry Smith     }
2589fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2590fa22f6d0SBarry Smith 
2591fa22f6d0SBarry Smith     if (hasop) {
2592fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2593887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259420f1ed55SBarry Smith     } else {
259520f1ed55SBarry Smith       /*
259620f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
259720f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2598887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259920f1ed55SBarry Smith       */
260020f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
260120f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
260220f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
260320f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
260420f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2605887ee2caSBarry Smith       if (omega == 1.0) {
260620f1ed55SBarry Smith 	for (i=0; i<n; i++) {
260720f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
260820f1ed55SBarry Smith 	}
260920f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2610887ee2caSBarry Smith       } else {
2611887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2612887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2613887ee2caSBarry Smith 	}
2614887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2615887ee2caSBarry Smith       }
261620f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
261720f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
261820f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
261920f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
262020f1ed55SBarry Smith     }
2621fa22f6d0SBarry Smith 
2622fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2623fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2624fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2625fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2627fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2628fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2629fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2630fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2631fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2632effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2633fa22f6d0SBarry Smith 
2634fa22f6d0SBarry Smith     /* local sweep */
263541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2636fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2637ffe4fb16SHong Zhang   } else {
2638ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2639ffe4fb16SHong Zhang   }
2640ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2641ffe4fb16SHong Zhang }
2642ffe4fb16SHong Zhang 
2643ffe4fb16SHong Zhang #undef __FUNCT__
264441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
264541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2646ffe4fb16SHong Zhang {
2647ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2648dfbe8321SBarry Smith   PetscErrorCode ierr;
26492798e883SHong Zhang   Vec            lvec1,bb1;
26502798e883SHong Zhang 
26512798e883SHong Zhang   PetscFunctionBegin;
265277431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2653b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26542798e883SHong Zhang 
2655c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26562798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
265741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26582798e883SHong Zhang       its--;
26592798e883SHong Zhang     }
26602798e883SHong Zhang 
26612798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26622798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26632798e883SHong Zhang     while (its--){
2664ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26652798e883SHong Zhang 
26662798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26672798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2668efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26692798e883SHong Zhang 
2670ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26712798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2672ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26732798e883SHong Zhang 
26742798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2675efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26762798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26772798e883SHong Zhang 
2678ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26792798e883SHong Zhang 
2680c14dc6b6SHong Zhang       /* diagonal sweep */
268141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26822798e883SHong Zhang     }
26832798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26842798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2685c14dc6b6SHong Zhang   } else {
2686c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2687c14dc6b6SHong Zhang   }
26882798e883SHong Zhang   PetscFunctionReturn(0);
26892798e883SHong Zhang }
26902798e883SHong Zhang 
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