xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 6816a49fd4e6576fc12f94e63e19b138cd9a2c0f)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
909573ac7SBarry Smith extern PetscErrorCode DisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
267087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
55a30f8f8cSSatish Balay { \
56a30f8f8cSSatish Balay  \
57a30f8f8cSSatish Balay     brow = row/bs;  \
58a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
59a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
60a30f8f8cSSatish Balay       bcol = col/bs; \
61a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
62a30f8f8cSSatish Balay       low = 0; high = nrow; \
63a30f8f8cSSatish Balay       while (high-low > 3) { \
64a30f8f8cSSatish Balay         t = (low+high)/2; \
65a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
66a30f8f8cSSatish Balay         else              low  = t; \
67a30f8f8cSSatish Balay       } \
68a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
69a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
70a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
71a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
72a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
73a30f8f8cSSatish Balay           else                    *bap  = value;  \
74a30f8f8cSSatish Balay           goto a_noinsert; \
75a30f8f8cSSatish Balay         } \
76a30f8f8cSSatish Balay       } \
77a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
78e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
79fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
80a30f8f8cSSatish Balay       N = nrow++ - 1;  \
81a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
82a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
83a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
84a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
85a30f8f8cSSatish Balay       } \
86a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
87a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
88a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
89a30f8f8cSSatish Balay       a_noinsert:; \
90a30f8f8cSSatish Balay     ailen[brow] = nrow; \
91a30f8f8cSSatish Balay }
92e5e170daSBarry Smith 
93a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
94a30f8f8cSSatish Balay { \
95a30f8f8cSSatish Balay     brow = row/bs;  \
96a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
97a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
98a30f8f8cSSatish Balay       bcol = col/bs; \
99a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
100a30f8f8cSSatish Balay       low = 0; high = nrow; \
101a30f8f8cSSatish Balay       while (high-low > 3) { \
102a30f8f8cSSatish Balay         t = (low+high)/2; \
103a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
104a30f8f8cSSatish Balay         else              low  = t; \
105a30f8f8cSSatish Balay       } \
106a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
107a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
108a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
109a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
110a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
111a30f8f8cSSatish Balay           else                    *bap  = value;  \
112a30f8f8cSSatish Balay           goto b_noinsert; \
113a30f8f8cSSatish Balay         } \
114a30f8f8cSSatish Balay       } \
115a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
116e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
117fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
118a30f8f8cSSatish Balay       N = nrow++ - 1;  \
119a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
120a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
121a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
122a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay       } \
124a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
125a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
126a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
127a30f8f8cSSatish Balay       b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat            A = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat            B = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
163910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
164910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
16771fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
168a30f8f8cSSatish Balay   if (!baij->donotstash){
16959ffdab8SBarry Smith     if (n > baij->n_loc) {
17059ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17159ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
18901b2bd88SHong Zhang           if (a->ignore_ltriangular){
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19101b2bd88SHong Zhang           } else {
192e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19301b2bd88SHong Zhang           }
19401b2bd88SHong Zhang         }
195a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
196a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
197a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
198a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
199a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
200a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
201a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
202a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
204cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
205a30f8f8cSSatish Balay #endif
206a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
207a30f8f8cSSatish Balay           if (mat->was_assembled) {
208a30f8f8cSSatish Balay             if (!baij->colmap) {
209653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
210a30f8f8cSSatish Balay             }
211a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
212a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21371730473SSatish Balay             col  = col - 1;
214a30f8f8cSSatish Balay #else
21571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
216a30f8f8cSSatish Balay #endif
217a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
218a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
219a30f8f8cSSatish Balay               col =  in[j];
220a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
221a30f8f8cSSatish Balay               B = baij->B;
222a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
223a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
224a30f8f8cSSatish Balay               ba=b->a;
22571730473SSatish Balay             } else col += in[j]%bs;
226a30f8f8cSSatish Balay           } else col = in[j];
227a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
2355080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
261ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++  = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3120880e062SHong Zhang         }
3130880e062SHong Zhang         else if (in[j] < 0) continue;
3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
315cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3160880e062SHong Zhang #endif
3170880e062SHong Zhang         else {
3180880e062SHong Zhang           if (mat->was_assembled) {
3190880e062SHong Zhang             if (!baij->colmap) {
320653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3210880e062SHong Zhang             }
3220880e062SHong Zhang 
3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3251302d50aSBarry Smith             { PetscInt data;
3260880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
327e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3280880e062SHong Zhang             }
3290880e062SHong Zhang #else
330e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3340880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3350880e062SHong Zhang             col  = (col - 1)/bs;
3360880e062SHong Zhang #else
3370880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3380880e062SHong Zhang #endif
3390880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3400880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3410880e062SHong Zhang               col =  in[j];
3420880e062SHong Zhang             }
3430880e062SHong Zhang           }
3440880e062SHong Zhang           else col = in[j];
345e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3460880e062SHong Zhang         }
3470880e062SHong Zhang       }
3480880e062SHong Zhang     } else {
3494cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3500880e062SHong Zhang       if (!baij->donotstash) {
3510880e062SHong Zhang         if (roworiented) {
3520880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         } else {
3540880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3550880e062SHong Zhang         }
3560880e062SHong Zhang       }
3570880e062SHong Zhang     }
3580880e062SHong Zhang   }
3590880e062SHong Zhang   PetscFunctionReturn(0);
360a30f8f8cSSatish Balay }
361a30f8f8cSSatish Balay 
3624a2ae208SSatish Balay #undef __FUNCT__
3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
365a30f8f8cSSatish Balay {
366f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3676849ba73SBarry Smith   PetscErrorCode ierr;
368d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
369d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
370a30f8f8cSSatish Balay 
371a30f8f8cSSatish Balay   PetscFunctionBegin;
372a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
373e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
374e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
375a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
376a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
377a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
378e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
379e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
380a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
381a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
382c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
383a30f8f8cSSatish Balay         } else {
384a30f8f8cSSatish Balay           if (!baij->colmap) {
385653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
386a30f8f8cSSatish Balay           }
387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
388a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
389a30f8f8cSSatish Balay           data --;
390a30f8f8cSSatish Balay #else
391a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
392a30f8f8cSSatish Balay #endif
393a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
394a30f8f8cSSatish Balay           else {
395a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
396e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
397a30f8f8cSSatish Balay           }
398a30f8f8cSSatish Balay         }
399a30f8f8cSSatish Balay       }
400a30f8f8cSSatish Balay     } else {
401e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
402a30f8f8cSSatish Balay     }
403a30f8f8cSSatish Balay   }
404a30f8f8cSSatish Balay  PetscFunctionReturn(0);
405a30f8f8cSSatish Balay }
406a30f8f8cSSatish Balay 
4074a2ae208SSatish Balay #undef __FUNCT__
4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
410a30f8f8cSSatish Balay {
411a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
412dfbe8321SBarry Smith   PetscErrorCode ierr;
413a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
414a30f8f8cSSatish Balay 
415a30f8f8cSSatish Balay   PetscFunctionBegin;
416a30f8f8cSSatish Balay   if (baij->size == 1) {
417a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
418a30f8f8cSSatish Balay   } else {
419a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
420f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
423a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
425d9822059SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4268f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2*sum[1]);
427a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4280b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4290b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4300b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4310b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
432899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
433d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4340b8dc8d2SHong Zhang       MatScalar    *v;
4350b8dc8d2SHong Zhang 
43674ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
437d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4380b8dc8d2SHong Zhang       /* Amat */
4390b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4400b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4410b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4420b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4430b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4440b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4450b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4460b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4470b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4480b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4490b8dc8d2SHong Zhang               /* non-diagonal block */
4500b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4510b8dc8d2SHong Zhang             }
4520b8dc8d2SHong Zhang           }
4530b8dc8d2SHong Zhang         }
4540b8dc8d2SHong Zhang       }
4550b8dc8d2SHong Zhang       /* Bmat */
4560b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4570b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4580b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4590b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4600b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4610b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4620b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4630b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4640b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4650b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4660b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4670b8dc8d2SHong Zhang             }
4680b8dc8d2SHong Zhang           }
4690b8dc8d2SHong Zhang         }
4700b8dc8d2SHong Zhang       }
471d9822059SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4720b8dc8d2SHong Zhang       *norm = 0.0;
473d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4740b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4750b8dc8d2SHong Zhang       }
47674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
477a30f8f8cSSatish Balay     } else {
478e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
479a30f8f8cSSatish Balay     }
480a30f8f8cSSatish Balay   }
481a30f8f8cSSatish Balay   PetscFunctionReturn(0);
482a30f8f8cSSatish Balay }
483a30f8f8cSSatish Balay 
4844a2ae208SSatish Balay #undef __FUNCT__
4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
487a30f8f8cSSatish Balay {
488a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
489dfbe8321SBarry Smith   PetscErrorCode ierr;
4901302d50aSBarry Smith   PetscInt       nstash,reallocs;
491a30f8f8cSSatish Balay   InsertMode     addv;
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   PetscFunctionBegin;
4944cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
495a30f8f8cSSatish Balay     PetscFunctionReturn(0);
496a30f8f8cSSatish Balay   }
497a30f8f8cSSatish Balay 
498a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4997adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
500e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
501a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
502a30f8f8cSSatish Balay 
503d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5081e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
509a30f8f8cSSatish Balay   PetscFunctionReturn(0);
510a30f8f8cSSatish Balay }
511a30f8f8cSSatish Balay 
5124a2ae208SSatish Balay #undef __FUNCT__
5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
515a30f8f8cSSatish Balay {
516a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
517a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5186849ba73SBarry Smith   PetscErrorCode ierr;
51913f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
520e44c0bd4SBarry Smith   PetscInt       *row,*col;
521ace3abfcSBarry Smith   PetscBool      other_disassembled;
52213f74950SBarry Smith   PetscMPIInt    n;
523ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
524a30f8f8cSSatish Balay   MatScalar      *val;
525a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
526a30f8f8cSSatish Balay 
52791c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
528a30f8f8cSSatish Balay   PetscFunctionBegin;
529a30f8f8cSSatish Balay 
5304cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
531a30f8f8cSSatish Balay     while (1) {
532a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
533a30f8f8cSSatish Balay       if (!flg) break;
534a30f8f8cSSatish Balay 
535a30f8f8cSSatish Balay       for (i=0; i<n;) {
536a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
537a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
538a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
539a30f8f8cSSatish Balay         else       ncols = n-i;
540a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
541dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
542a30f8f8cSSatish Balay         i = j;
543a30f8f8cSSatish Balay       }
544a30f8f8cSSatish Balay     }
545a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
546a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
547a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
548a30f8f8cSSatish Balay        restore the original flags */
549a30f8f8cSSatish Balay     r1 = baij->roworiented;
550a30f8f8cSSatish Balay     r2 = a->roworiented;
55191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
552a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
553a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
555a30f8f8cSSatish Balay     while (1) {
556a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
557a30f8f8cSSatish Balay       if (!flg) break;
558a30f8f8cSSatish Balay 
559a30f8f8cSSatish Balay       for (i=0; i<n;) {
560a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
561a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
562a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
563a30f8f8cSSatish Balay         else       ncols = n-i;
564dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
565a30f8f8cSSatish Balay         i = j;
566a30f8f8cSSatish Balay       }
567a30f8f8cSSatish Balay     }
568a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
569a30f8f8cSSatish Balay     baij->roworiented = r1;
570a30f8f8cSSatish Balay     a->roworiented    = r2;
57191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
572a30f8f8cSSatish Balay   }
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
576a30f8f8cSSatish Balay 
577a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
578a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
579a30f8f8cSSatish Balay   /*
580a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
581a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
582a30f8f8cSSatish Balay   */
583a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5847adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
586c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
587a30f8f8cSSatish Balay     }
588a30f8f8cSSatish Balay   }
589a30f8f8cSSatish Balay 
590a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
592a30f8f8cSSatish Balay   }
593cd6b891eSBarry Smith   ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr);
594a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
595a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
596a30f8f8cSSatish Balay 
59774ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
598a30f8f8cSSatish Balay   baij->rowvalues = 0;
5995222a1afSHong Zhang 
600a30f8f8cSSatish Balay   PetscFunctionReturn(0);
601a30f8f8cSSatish Balay }
602a30f8f8cSSatish Balay 
603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6044a2ae208SSatish Balay #undef __FUNCT__
6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
607a30f8f8cSSatish Balay {
608a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
609dfbe8321SBarry Smith   PetscErrorCode    ierr;
610d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6111302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
612ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
613b0a32e0cSBarry Smith   PetscViewer       sviewer;
614f3ef73ceSBarry Smith   PetscViewerFormat format;
615a30f8f8cSSatish Balay 
616a30f8f8cSSatish Balay   PetscFunctionBegin;
6172692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
6182692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61932077d6dSBarry Smith   if (iascii) {
620b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
621456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
622a30f8f8cSSatish Balay       MatInfo info;
6237adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
624a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6257b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6267b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
627a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
628e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
629a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
630e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
631b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6327b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
634a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       PetscFunctionReturn(0);
636fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
638a30f8f8cSSatish Balay       PetscFunctionReturn(0);
639c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
640c1490034SHong Zhang       PetscFunctionReturn(0);
641a30f8f8cSSatish Balay     }
642a30f8f8cSSatish Balay   }
643a30f8f8cSSatish Balay 
644a30f8f8cSSatish Balay   if (isdraw) {
645b0a32e0cSBarry Smith     PetscDraw  draw;
646ace3abfcSBarry Smith     PetscBool  isnull;
647b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
648b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (size == 1) {
6527adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
654a30f8f8cSSatish Balay   } else {
655a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
656a30f8f8cSSatish Balay     Mat          A;
65765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
659d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
660a30f8f8cSSatish Balay     MatScalar    *a;
661a30f8f8cSSatish Balay 
662f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6637adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     if (!rank) {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     } else {
667f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     }
669f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
670d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
6712b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
67252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
673a30f8f8cSSatish Balay 
674a30f8f8cSSatish Balay     /* copy over the A part */
67565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
676a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6771302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
678a30f8f8cSSatish Balay 
679a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
680e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
681a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
682a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
683e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
684a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
685dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
686a30f8f8cSSatish Balay           col++; a += bs;
687a30f8f8cSSatish Balay         }
688a30f8f8cSSatish Balay       }
689a30f8f8cSSatish Balay     }
690a30f8f8cSSatish Balay     /* copy over the B part */
69165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
693a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
694e9f7bc9eSHong Zhang 
695e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
696a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
697a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
698a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
699a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
700799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
701a30f8f8cSSatish Balay           col++; a += bs;
702a30f8f8cSSatish Balay         }
703a30f8f8cSSatish Balay       }
704a30f8f8cSSatish Balay     }
705a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
708a30f8f8cSSatish Balay     /*
709a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
710b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
711a30f8f8cSSatish Balay     */
712b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71365d70643SHong Zhang     if (!rank) {
7147adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7157566de4bSShri Abhyankar           /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/
7167566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);
717a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     }
719b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7206bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
721a30f8f8cSSatish Balay   }
722a30f8f8cSSatish Balay   PetscFunctionReturn(0);
723a30f8f8cSSatish Balay }
724a30f8f8cSSatish Balay 
7254a2ae208SSatish Balay #undef __FUNCT__
7264a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
727dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
728a30f8f8cSSatish Balay {
729dfbe8321SBarry Smith   PetscErrorCode ierr;
730ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
731a30f8f8cSSatish Balay 
732a30f8f8cSSatish Balay   PetscFunctionBegin;
7332692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
7342692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7352692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
7362692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73732077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
738a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
739a30f8f8cSSatish Balay   } else {
740e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
741a30f8f8cSSatish Balay   }
742a30f8f8cSSatish Balay   PetscFunctionReturn(0);
743a30f8f8cSSatish Balay }
744a30f8f8cSSatish Balay 
7454a2ae208SSatish Balay #undef __FUNCT__
7464a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
747dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
748a30f8f8cSSatish Balay {
749a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
750dfbe8321SBarry Smith   PetscErrorCode ierr;
751a30f8f8cSSatish Balay 
752a30f8f8cSSatish Balay   PetscFunctionBegin;
753a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
754d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
755a30f8f8cSSatish Balay #endif
756a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7586bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7596bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
760a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7616bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #else
76305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
764a30f8f8cSSatish Balay #endif
76505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7745755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77605b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7776bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7786bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7796bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
780ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78105b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
782a30f8f8cSSatish Balay #endif
78359ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78459ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
785899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
786bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
787901853e0SKris Buschelman 
788dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
793aa5a9175SDahai Guo   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",PETSC_NULL);CHKERRQ(ierr);
794a30f8f8cSSatish Balay   PetscFunctionReturn(0);
795a30f8f8cSSatish Balay }
796a30f8f8cSSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
800547795f9SHong Zhang {
801547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
802547795f9SHong Zhang   PetscErrorCode ierr;
803547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
804547795f9SHong Zhang   PetscScalar    *x,*from;
805547795f9SHong Zhang 
806547795f9SHong Zhang   PetscFunctionBegin;
807547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
808e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
809547795f9SHong Zhang 
810547795f9SHong Zhang   /* diagonal part */
811547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* subdiagonal part */
815547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* copy x into the vec slvec0 */
818547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820547795f9SHong Zhang 
821547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824547795f9SHong Zhang 
825547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827547795f9SHong Zhang   /* supperdiagonal part */
828547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829547795f9SHong Zhang   PetscFunctionReturn(0);
830547795f9SHong Zhang }
831547795f9SHong Zhang 
832547795f9SHong Zhang #undef __FUNCT__
833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
835a9d4b620SHong Zhang {
836a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
838d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
839fa22f6d0SBarry Smith   PetscScalar    *x,*from;
840a9d4b620SHong Zhang 
841a9d4b620SHong Zhang   PetscFunctionBegin;
842a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
843e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a9d4b620SHong Zhang 
845a9d4b620SHong Zhang   /* diagonal part */
846a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
847fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
848a9d4b620SHong Zhang 
849a9d4b620SHong Zhang   /* subdiagonal part */
850a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
851fc165ae2SBarry Smith 
852a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8531ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
855a9d4b620SHong Zhang 
856fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
857fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8581ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
859fc165ae2SBarry Smith 
860fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
861ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862a9d4b620SHong Zhang   /* supperdiagonal part */
863a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
864a9d4b620SHong Zhang   PetscFunctionReturn(0);
865a9d4b620SHong Zhang }
866a9d4b620SHong Zhang 
867a9d4b620SHong Zhang #undef __FUNCT__
86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
870a30f8f8cSSatish Balay {
871a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
872dfbe8321SBarry Smith   PetscErrorCode ierr;
8731302d50aSBarry Smith   PetscInt       nt;
874a30f8f8cSSatish Balay 
875a30f8f8cSSatish Balay   PetscFunctionBegin;
876a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
877e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
878e7e72b3dSBarry Smith 
879a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
880e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88165d70643SHong Zhang 
882ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
883b941877fSHong Zhang   /* do diagonal part */
884b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
885b941877fSHong Zhang   /* do supperdiagonal part */
886ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
887b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
888b941877fSHong Zhang   /* do subdiagonal part */
889b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
890ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
891ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89265d70643SHong Zhang 
893a30f8f8cSSatish Balay   PetscFunctionReturn(0);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
8964a2ae208SSatish Balay #undef __FUNCT__
8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
899a30f8f8cSSatish Balay {
900de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
901dfbe8321SBarry Smith   PetscErrorCode ierr;
902d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
903a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
904a9d4b620SHong Zhang 
905a9d4b620SHong Zhang   PetscFunctionBegin;
906a9d4b620SHong Zhang   /*
9077adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9087adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
909a9d4b620SHong Zhang   */
910a9d4b620SHong Zhang   /* diagonal part */
911a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9122dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   /* subdiagonal part */
915a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
916a9d4b620SHong Zhang 
917a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9181ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9191ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
920a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
922a9d4b620SHong Zhang 
923ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9241ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
925ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
926a9d4b620SHong Zhang 
927a9d4b620SHong Zhang   /* supperdiagonal part */
928a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
929a9d4b620SHong Zhang 
930a9d4b620SHong Zhang   PetscFunctionReturn(0);
931a9d4b620SHong Zhang }
932a9d4b620SHong Zhang 
933a9d4b620SHong Zhang #undef __FUNCT__
934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
936a9d4b620SHong Zhang {
937a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
938dfbe8321SBarry Smith   PetscErrorCode ierr;
939a30f8f8cSSatish Balay 
940a30f8f8cSSatish Balay   PetscFunctionBegin;
941ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do diagonal part */
943b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
944b941877fSHong Zhang   /* do supperdiagonal part */
945ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
946de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
947de8b6608SHong Zhang 
948b941877fSHong Zhang   /* do subdiagonal part */
949a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
950ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
952aa482183SHong Zhang 
953a30f8f8cSSatish Balay   PetscFunctionReturn(0);
954a30f8f8cSSatish Balay }
955a30f8f8cSSatish Balay 
956a30f8f8cSSatish Balay /*
957a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
958a30f8f8cSSatish Balay    diagonal block
959a30f8f8cSSatish Balay */
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
963a30f8f8cSSatish Balay {
964a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
965dfbe8321SBarry Smith   PetscErrorCode ierr;
966a30f8f8cSSatish Balay 
967a30f8f8cSSatish Balay   PetscFunctionBegin;
968e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
969a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
970a30f8f8cSSatish Balay   PetscFunctionReturn(0);
971a30f8f8cSSatish Balay }
972a30f8f8cSSatish Balay 
9734a2ae208SSatish Balay #undef __FUNCT__
9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
976a30f8f8cSSatish Balay {
977a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
978dfbe8321SBarry Smith   PetscErrorCode ierr;
979a30f8f8cSSatish Balay 
980a30f8f8cSSatish Balay   PetscFunctionBegin;
981f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
982f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
983a30f8f8cSSatish Balay   PetscFunctionReturn(0);
984a30f8f8cSSatish Balay }
985a30f8f8cSSatish Balay 
9864a2ae208SSatish Balay #undef __FUNCT__
9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
989a30f8f8cSSatish Balay {
990d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
991d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
992d0d4cfc2SHong Zhang   PetscErrorCode ierr;
993d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
994d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
995899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
996d0d4cfc2SHong Zhang 
997a30f8f8cSSatish Balay   PetscFunctionBegin;
998e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
999d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1000d0d4cfc2SHong Zhang 
1001d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1002d0d4cfc2SHong Zhang     /*
1003d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1004d0d4cfc2SHong Zhang     */
1005d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1006d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1007d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1008d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1009d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1010d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1011d0d4cfc2SHong Zhang     }
101274ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1013d0d4cfc2SHong Zhang   }
1014d0d4cfc2SHong Zhang 
1015e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1016d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1017d0d4cfc2SHong Zhang 
1018d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1019d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1020d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1021d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1022d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1023d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1024d0d4cfc2SHong Zhang 
1025d0d4cfc2SHong Zhang   cmap  = mat->garray;
1026d0d4cfc2SHong Zhang   if (v  || idx) {
1027d0d4cfc2SHong Zhang     if (nztot) {
1028d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1029d0d4cfc2SHong Zhang       PetscInt imark = -1;
1030d0d4cfc2SHong Zhang       if (v) {
1031d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1032d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1033d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1034d0d4cfc2SHong Zhang           else break;
1035d0d4cfc2SHong Zhang         }
1036d0d4cfc2SHong Zhang         imark = i;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1038d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1039d0d4cfc2SHong Zhang       }
1040d0d4cfc2SHong Zhang       if (idx) {
1041d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1042d0d4cfc2SHong Zhang         if (imark > -1) {
1043d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1044d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1045d0d4cfc2SHong Zhang           }
1046d0d4cfc2SHong Zhang         } else {
1047d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1048d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1049d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1050d0d4cfc2SHong Zhang             else break;
1051d0d4cfc2SHong Zhang           }
1052d0d4cfc2SHong Zhang           imark = i;
1053d0d4cfc2SHong Zhang         }
1054d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1055d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1056d0d4cfc2SHong Zhang       }
1057d0d4cfc2SHong Zhang     } else {
1058d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1059d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1060d0d4cfc2SHong Zhang     }
1061d0d4cfc2SHong Zhang   }
1062d0d4cfc2SHong Zhang   *nz = nztot;
1063d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1064d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1065a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1066a30f8f8cSSatish Balay }
1067a30f8f8cSSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1071a30f8f8cSSatish Balay {
1072a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1073a30f8f8cSSatish Balay 
1074a30f8f8cSSatish Balay   PetscFunctionBegin;
1075e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1076a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1077a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1078a30f8f8cSSatish Balay }
1079a30f8f8cSSatish Balay 
10804a2ae208SSatish Balay #undef __FUNCT__
1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1083d0d4cfc2SHong Zhang {
1084d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1085d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1086d0d4cfc2SHong Zhang 
1087d0d4cfc2SHong Zhang   PetscFunctionBegin;
1088d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1089d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1090d0d4cfc2SHong Zhang }
1091d0d4cfc2SHong Zhang #undef __FUNCT__
1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1094d0d4cfc2SHong Zhang {
1095d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1096d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1097d0d4cfc2SHong Zhang 
1098d0d4cfc2SHong Zhang   PetscFunctionBegin;
1099d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1100d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1101d0d4cfc2SHong Zhang }
1102d0d4cfc2SHong Zhang 
1103d0d4cfc2SHong Zhang #undef __FUNCT__
110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110699cafbc1SBarry Smith {
110799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110899cafbc1SBarry Smith   PetscErrorCode ierr;
110999cafbc1SBarry Smith 
111099cafbc1SBarry Smith   PetscFunctionBegin;
111199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111399cafbc1SBarry Smith   PetscFunctionReturn(0);
111499cafbc1SBarry Smith }
111599cafbc1SBarry Smith 
111699cafbc1SBarry Smith #undef __FUNCT__
111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111999cafbc1SBarry Smith {
112099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112199cafbc1SBarry Smith   PetscErrorCode ierr;
112299cafbc1SBarry Smith 
112399cafbc1SBarry Smith   PetscFunctionBegin;
112499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112699cafbc1SBarry Smith   PetscFunctionReturn(0);
112799cafbc1SBarry Smith }
112899cafbc1SBarry Smith 
112999cafbc1SBarry Smith #undef __FUNCT__
11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1132a30f8f8cSSatish Balay {
1133a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1134dfbe8321SBarry Smith   PetscErrorCode ierr;
1135a30f8f8cSSatish Balay 
1136a30f8f8cSSatish Balay   PetscFunctionBegin;
1137a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1139a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1140a30f8f8cSSatish Balay }
1141a30f8f8cSSatish Balay 
11424a2ae208SSatish Balay #undef __FUNCT__
11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1145a30f8f8cSSatish Balay {
1146a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1147a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1148dfbe8321SBarry Smith   PetscErrorCode ierr;
1149a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1150a30f8f8cSSatish Balay 
1151a30f8f8cSSatish Balay   PetscFunctionBegin;
1152d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1153a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1154a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1155a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1156a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1157a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1158a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1159a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1160a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1161a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1162a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1163a30f8f8cSSatish Balay     info->memory       = isend[3];
1164a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1165a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1166d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1168a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1169a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1170a30f8f8cSSatish Balay     info->memory       = irecv[3];
1171a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1172a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1173d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1175a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1176a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1177a30f8f8cSSatish Balay     info->memory       = irecv[3];
1178a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1179a30f8f8cSSatish Balay   } else {
1180e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1181a30f8f8cSSatish Balay   }
1182a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1183a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1184a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1185a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1186a30f8f8cSSatish Balay }
1187a30f8f8cSSatish Balay 
11884a2ae208SSatish Balay #undef __FUNCT__
11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1190ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool  flg)
1191a30f8f8cSSatish Balay {
1192a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1193d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1194dfbe8321SBarry Smith   PetscErrorCode ierr;
1195a30f8f8cSSatish Balay 
1196a30f8f8cSSatish Balay   PetscFunctionBegin;
1197e98b92d7SKris Buschelman   switch (op) {
1198512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1199e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1201a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1202e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12034e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12044e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1205e98b92d7SKris Buschelman     break;
1206e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12074e0d8c25SBarry Smith     a->roworiented = flg;
12084e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12094e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1210e98b92d7SKris Buschelman     break;
12114e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1212290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12154e0d8c25SBarry Smith     a->donotstash = flg;
1216e98b92d7SKris Buschelman     break;
1217e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12184e0d8c25SBarry Smith     a->ht_flag = flg;
1219e98b92d7SKris Buschelman     break;
12209a4540c5SBarry Smith   case MAT_HERMITIAN:
1221e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1222eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1223547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1224eeffb40dSHong Zhang     break;
1225ffa07934SHong Zhang   case MAT_SPD:
1226ffa07934SHong Zhang     A->spd_set                         = PETSC_TRUE;
1227ffa07934SHong Zhang     A->spd                             = flg;
1228ffa07934SHong Zhang     if (flg) {
1229ffa07934SHong Zhang       A->symmetric                     = PETSC_TRUE;
1230ffa07934SHong Zhang       A->structurally_symmetric        = PETSC_TRUE;
1231ffa07934SHong Zhang       A->symmetric_set                 = PETSC_TRUE;
1232ffa07934SHong Zhang       A->structurally_symmetric_set    = PETSC_TRUE;
1233ffa07934SHong Zhang     }
1234ffa07934SHong Zhang     break;
123577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1236eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1237eeffb40dSHong Zhang     break;
123877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1239eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1240eeffb40dSHong Zhang     break;
12419a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1242e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1243290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124477e54ba9SKris Buschelman     break;
1245d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12464e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1247d0d4cfc2SHong Zhang     break;
1248d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12494e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1250d0d4cfc2SHong Zhang     break;
1251d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12524e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1253d0d4cfc2SHong Zhang     break;
1254e98b92d7SKris Buschelman   default:
1255e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1256a30f8f8cSSatish Balay   }
1257a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1263a30f8f8cSSatish Balay {
1264dfbe8321SBarry Smith   PetscErrorCode ierr;
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1267999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1268fc4dec0aSBarry Smith   }
12698115998fSBarry Smith   PetscFunctionReturn(0);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
12724a2ae208SSatish Balay #undef __FUNCT__
12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1275a30f8f8cSSatish Balay {
1276a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1277a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1278dfbe8321SBarry Smith   PetscErrorCode ierr;
12795e90f9d9SHong Zhang   PetscInt       nv,m,n;
1280ace3abfcSBarry Smith   PetscBool      flg;
1281a30f8f8cSSatish Balay 
1282a30f8f8cSSatish Balay   PetscFunctionBegin;
1283a30f8f8cSSatish Balay   if (ll != rr){
1284b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1285e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1286a30f8f8cSSatish Balay   }
1287b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1288b3bf805bSHong Zhang 
12895e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1290e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1291b3bf805bSHong Zhang 
12925e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1293e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12945e90f9d9SHong Zhang 
1295ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12965e90f9d9SHong Zhang 
12975e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1298a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12995e90f9d9SHong Zhang 
13005e90f9d9SHong Zhang   /* scale the diagonal part */
1301a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1302a30f8f8cSSatish Balay 
13035e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1304ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1307a30f8f8cSSatish Balay }
1308a30f8f8cSSatish Balay 
13094a2ae208SSatish Balay #undef __FUNCT__
13104a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1311dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1312a30f8f8cSSatish Balay {
1313f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1314dfbe8321SBarry Smith   PetscErrorCode ierr;
1315a30f8f8cSSatish Balay 
1316a30f8f8cSSatish Balay   PetscFunctionBegin;
1317a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1318a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1319a30f8f8cSSatish Balay }
1320a30f8f8cSSatish Balay 
13216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1322a30f8f8cSSatish Balay 
13234a2ae208SSatish Balay #undef __FUNCT__
13244a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1325ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1326a30f8f8cSSatish Balay {
1327a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1328a30f8f8cSSatish Balay   Mat            a,b,c,d;
1329ace3abfcSBarry Smith   PetscBool      flg;
1330dfbe8321SBarry Smith   PetscErrorCode ierr;
1331a30f8f8cSSatish Balay 
1332a30f8f8cSSatish Balay   PetscFunctionBegin;
1333a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1334a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1335a30f8f8cSSatish Balay 
1336a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1337abc0a331SBarry Smith   if (flg) {
1338a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1339a30f8f8cSSatish Balay   }
13407adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1342a30f8f8cSSatish Balay }
1343a30f8f8cSSatish Balay 
13444a2ae208SSatish Balay #undef __FUNCT__
13453c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13473c896bc6SHong Zhang {
13483c896bc6SHong Zhang   PetscErrorCode ierr;
13493c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13503c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13513c896bc6SHong Zhang 
13523c896bc6SHong Zhang   PetscFunctionBegin;
13533c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13543c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1355d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13563c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1357d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13583c896bc6SHong Zhang   } else {
13593c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13603c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13613c896bc6SHong Zhang   }
13623c896bc6SHong Zhang   PetscFunctionReturn(0);
13633c896bc6SHong Zhang }
13643c896bc6SHong Zhang 
13653c896bc6SHong Zhang #undef __FUNCT__
13664994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
13674994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1368273d9f13SBarry Smith {
1369dfbe8321SBarry Smith   PetscErrorCode ierr;
1370273d9f13SBarry Smith 
1371273d9f13SBarry Smith   PetscFunctionBegin;
1372db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1373273d9f13SBarry Smith   PetscFunctionReturn(0);
1374273d9f13SBarry Smith }
1375a5e6ed63SBarry Smith 
13764fe895cdSHong Zhang #undef __FUNCT__
13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13794fe895cdSHong Zhang {
13804fe895cdSHong Zhang   PetscErrorCode ierr;
13814fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13824fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13834fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13844fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13854fe895cdSHong Zhang 
13864fe895cdSHong Zhang   PetscFunctionBegin;
13874fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13884fe895cdSHong Zhang     PetscScalar alpha = a;
13894fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13904fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13910805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13934fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13944fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13950805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13964fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13974fe895cdSHong Zhang   } else {
1398d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13994fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1400d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang   }
14024fe895cdSHong Zhang   PetscFunctionReturn(0);
14034fe895cdSHong Zhang }
14044fe895cdSHong Zhang 
1405a5e6ed63SBarry Smith #undef __FUNCT__
14066363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14076363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14086363de48SJed Brown {
14096363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14106363de48SJed Brown   PetscInt        rbs,cbs;
14116363de48SJed Brown   PetscErrorCode  ierr;
14126363de48SJed Brown 
14136363de48SJed Brown   PetscFunctionBegin;
14146363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14156363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14166363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14176363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1418e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1419e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14206363de48SJed Brown   PetscFunctionReturn(0);
14216363de48SJed Brown }
14226363de48SJed Brown 
14236363de48SJed Brown #undef __FUNCT__
1424a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14251302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1426a5e6ed63SBarry Smith {
14276849ba73SBarry Smith   PetscErrorCode ierr;
14281302d50aSBarry Smith   PetscInt       i;
1429ace3abfcSBarry Smith   PetscBool      flg;
1430a5e6ed63SBarry Smith 
14316849ba73SBarry Smith   PetscFunctionBegin;
1432a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1433a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1434e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1435a5e6ed63SBarry Smith   }
1436a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1437a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1438a5e6ed63SBarry Smith }
1439a5e6ed63SBarry Smith 
1440a5e6ed63SBarry Smith 
1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1443a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1446a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1448431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1449431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1450a30f8f8cSSatish Balay        0,
1451a30f8f8cSSatish Balay        0,
1452a30f8f8cSSatish Balay        0,
145397304618SKris Buschelman /*10*/ 0,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
145641f059aeSBarry Smith        MatSOR_MPISBAIJ,
1457a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1459a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1467d519adbfSMatthew Knepley /*24*/ 0,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
14724994cf47SJed Brown /*29*/ MatSetUp_MPISBAIJ,
1473b5df2d14SHong Zhang        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1483a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1484d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1485a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14863c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1487d519adbfSMatthew Knepley /*44*/ 0,
1488a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        0,
14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497d519adbfSMatthew Knepley /*54*/ 0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1502d519adbfSMatthew Knepley /*59*/ 0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505357abbc8SBarry Smith        0,
150624d5174aSHong Zhang        0,
1507d519adbfSMatthew Knepley /*64*/ 0,
150824d5174aSHong Zhang        0,
150924d5174aSHong Zhang        0,
151024d5174aSHong Zhang        0,
151124d5174aSHong Zhang        0,
1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151324d5174aSHong Zhang        0,
151497304618SKris Buschelman        0,
151597304618SKris Buschelman        0,
151697304618SKris Buschelman        0,
1517d519adbfSMatthew Knepley /*74*/ 0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman        0,
1522d519adbfSMatthew Knepley /*79*/ 0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
15265bba2384SShri Abhyankar        MatLoad_MPISBAIJ,
1527d519adbfSMatthew Knepley /*84*/ 0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman        0,
1532d519adbfSMatthew Knepley /*89*/ 0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman        0,
1537d519adbfSMatthew Knepley /*94*/ 0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
154099cafbc1SBarry Smith        0,
154199cafbc1SBarry Smith        0,
1542d519adbfSMatthew Knepley /*99*/ 0,
154399cafbc1SBarry Smith        0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
154699cafbc1SBarry Smith        0,
1547d519adbfSMatthew Knepley /*104*/0,
154899cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1549d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1550d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
155195936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
155295936485SShri Abhyankar /*109*/0,
155395936485SShri Abhyankar        0,
155495936485SShri Abhyankar        0,
155595936485SShri Abhyankar        0,
155695936485SShri Abhyankar        0,
155795936485SShri Abhyankar /*114*/0,
155895936485SShri Abhyankar        0,
155995936485SShri Abhyankar        0,
156095936485SShri Abhyankar        0,
156195936485SShri Abhyankar        0,
156295936485SShri Abhyankar /*119*/0,
156395936485SShri Abhyankar        0,
156495936485SShri Abhyankar        0,
15655bba2384SShri Abhyankar        0
156699cafbc1SBarry Smith };
1567a30f8f8cSSatish Balay 
1568a30f8f8cSSatish Balay 
1569a30f8f8cSSatish Balay EXTERN_C_BEGIN
15704a2ae208SSatish Balay #undef __FUNCT__
15714a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
157211bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1573a30f8f8cSSatish Balay {
1574a30f8f8cSSatish Balay   PetscFunctionBegin;
1575a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ *)A->data)->A;
1576a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1577a30f8f8cSSatish Balay }
1578a30f8f8cSSatish Balay EXTERN_C_END
1579a30f8f8cSSatish Balay 
1580273d9f13SBarry Smith EXTERN_C_BEGIN
15814a2ae208SSatish Balay #undef __FUNCT__
1582a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
15837087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1584a23d5eceSKris Buschelman {
1585a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1586dfbe8321SBarry Smith   PetscErrorCode ierr;
1587db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1588a23d5eceSKris Buschelman 
1589a23d5eceSKris Buschelman   PetscFunctionBegin;
1590db4efbfdSBarry Smith   if (bs < 0){
15917adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1592db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15938c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1594db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1595db4efbfdSBarry Smith   }
1596e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1597db4efbfdSBarry Smith   bs = newbs;
1598a23d5eceSKris Buschelman 
1599a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1600a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1601e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1602e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1603899cda47SBarry Smith 
1604d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
160526283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
160626283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1607899cda47SBarry Smith 
1608a23d5eceSKris Buschelman   if (d_nnz) {
1609d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1610e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1611a23d5eceSKris Buschelman     }
1612a23d5eceSKris Buschelman   }
1613a23d5eceSKris Buschelman   if (o_nnz) {
1614d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1615e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1616a23d5eceSKris Buschelman     }
1617a23d5eceSKris Buschelman   }
1618a23d5eceSKris Buschelman 
1619a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1620d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1621d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1622c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1623a23d5eceSKris Buschelman 
1624d0f46423SBarry Smith   B->rmap->bs  = bs;
1625a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1626a23d5eceSKris Buschelman   b->mbs = mbs;
1627a23d5eceSKris Buschelman   b->nbs = mbs;
1628a23d5eceSKris Buschelman   b->Mbs = Mbs;
1629a23d5eceSKris Buschelman   b->Nbs = Mbs;
1630a23d5eceSKris Buschelman 
1631a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1632d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1633a23d5eceSKris Buschelman   }
1634d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1635d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1636a23d5eceSKris Buschelman 
1637d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1638d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1639a23d5eceSKris Buschelman 
1640526dfc15SBarry Smith   if (!B->preallocated) {
1641f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1642d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16439c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
164452e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1645f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1646d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16474aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164852e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
164915bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1650526dfc15SBarry Smith   }
1651a23d5eceSKris Buschelman 
1652526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1653526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1654526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1655a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1656a23d5eceSKris Buschelman }
1657a23d5eceSKris Buschelman EXTERN_C_END
1658a23d5eceSKris Buschelman 
16595c9eb25fSBarry Smith EXTERN_C_BEGIN
1660dfb205c3SBarry Smith #undef __FUNCT__
1661dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1662dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1663dfb205c3SBarry Smith {
1664dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1665dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1666dfb205c3SBarry Smith   const PetscInt *JJ=0;
1667dfb205c3SBarry Smith   PetscScalar    *values=0;
1668dfb205c3SBarry Smith   PetscErrorCode ierr;
1669dfb205c3SBarry Smith 
1670dfb205c3SBarry Smith   PetscFunctionBegin;
1671dfb205c3SBarry Smith 
1672dfb205c3SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1673dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1674dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1675dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1676dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1677dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1678dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1679dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1680dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1681dfb205c3SBarry Smith 
1682dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1683dfb205c3SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
1684dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1685dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1686dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1687dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1688dfb205c3SBarry Smith     JJ  = jj + ii[i];
1689dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1690dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1691dfb205c3SBarry Smith       JJ++;
1692dfb205c3SBarry Smith     }
1693dfb205c3SBarry Smith     d = 0;
1694dfb205c3SBarry Smith     for (; j<nz; j++) {
1695dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1696dfb205c3SBarry Smith       d++;
1697dfb205c3SBarry Smith     }
1698dfb205c3SBarry Smith     d_nnz[i] = d;
1699dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1700dfb205c3SBarry Smith   }
1701dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1702dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1703dfb205c3SBarry Smith 
1704dfb205c3SBarry Smith   values = (PetscScalar*)V;
1705dfb205c3SBarry Smith   if (!values) {
1706dfb205c3SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1707dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1708dfb205c3SBarry Smith   }
1709dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1710dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1711dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1712dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1713dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1714dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1715dfb205c3SBarry Smith   }
1716dfb205c3SBarry Smith 
1717dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1718dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1719dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17207827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1721dfb205c3SBarry Smith   PetscFunctionReturn(0);
1722dfb205c3SBarry Smith }
1723dfb205c3SBarry Smith EXTERN_C_END
1724dfb205c3SBarry Smith 
1725dfb205c3SBarry Smith EXTERN_C_BEGIN
1726611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17277087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1728611f576cSBarry Smith #endif
1729611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
17307087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1731611f576cSBarry Smith #endif
1732b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1733b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1734b5e56a35SBarry Smith #endif
17355c9eb25fSBarry Smith EXTERN_C_END
17365c9eb25fSBarry Smith 
17370bad9183SKris Buschelman /*MC
1738fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1739828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1740828413b8SBarry Smith    the matrix is stored.
1741828413b8SBarry Smith 
1742828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1743828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17440bad9183SKris Buschelman 
17450bad9183SKris Buschelman    Options Database Keys:
17460bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17470bad9183SKris Buschelman 
17480bad9183SKris Buschelman   Level: beginner
17490bad9183SKris Buschelman 
17500bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17510bad9183SKris Buschelman M*/
17520bad9183SKris Buschelman 
1753a23d5eceSKris Buschelman EXTERN_C_BEGIN
1754aa5a9175SDahai Guo extern PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,const MatType,MatReuse,Mat*);
1755aa5a9175SDahai Guo EXTERN_C_END
1756aa5a9175SDahai Guo 
1757aa5a9175SDahai Guo EXTERN_C_BEGIN
1758a23d5eceSKris Buschelman #undef __FUNCT__
17594a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17607087cfbeSBarry Smith PetscErrorCode  MatCreate_MPISBAIJ(Mat B)
1761b5df2d14SHong Zhang {
1762b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1763dfbe8321SBarry Smith   PetscErrorCode ierr;
1764ace3abfcSBarry Smith   PetscBool      flg;
1765b5df2d14SHong Zhang 
1766b5df2d14SHong Zhang   PetscFunctionBegin;
1767b5df2d14SHong Zhang 
176838f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1769b0a32e0cSBarry Smith   B->data = (void*)b;
1770b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1771b5df2d14SHong Zhang 
1772b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1773b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1774b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1775b5df2d14SHong Zhang 
1776b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
17777adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17787adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1779b5df2d14SHong Zhang 
1780b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1781899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1782b5df2d14SHong Zhang 
1783b5df2d14SHong Zhang   /* build cache for off array entries formed */
17847adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1785b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1786b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1787b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1788b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1789b5df2d14SHong Zhang 
1790b5df2d14SHong Zhang   /* stuff used in block assembly */
1791b5df2d14SHong Zhang   b->barray       = 0;
1792b5df2d14SHong Zhang 
1793b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1794b5df2d14SHong Zhang   b->lvec         = 0;
1795b5df2d14SHong Zhang   b->Mvctx        = 0;
179640781036SHong Zhang   b->slvec0       = 0;
179740781036SHong Zhang   b->slvec0b      = 0;
179840781036SHong Zhang   b->slvec1       = 0;
179940781036SHong Zhang   b->slvec1a      = 0;
180040781036SHong Zhang   b->slvec1b      = 0;
180140781036SHong Zhang   b->sMvctx       = 0;
1802b5df2d14SHong Zhang 
1803b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1804b5df2d14SHong Zhang   b->rowindices   = 0;
1805b5df2d14SHong Zhang   b->rowvalues    = 0;
1806b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1807b5df2d14SHong Zhang 
1808b5df2d14SHong Zhang   /* hash table stuff */
1809b5df2d14SHong Zhang   b->ht           = 0;
1810b5df2d14SHong Zhang   b->hd           = 0;
1811b5df2d14SHong Zhang   b->ht_size      = 0;
1812b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1813b5df2d14SHong Zhang   b->ht_fact      = 0;
1814b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1815b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1816b5df2d14SHong Zhang 
18177a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18187a868f3eSHong Zhang   b->ijonly       = PETSC_FALSE;
18197a868f3eSHong Zhang 
182059ffdab8SBarry Smith   b->in_loc       = 0;
182159ffdab8SBarry Smith   b->v_loc        = 0;
182259ffdab8SBarry Smith   b->n_loc        = 0;
18237adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
1824acfcf0e5SJed Brown     ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1825b5df2d14SHong Zhang     if (flg) {
1826f6275e2eSBarry Smith       PetscReal fact = 1.39;
18274e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18288c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1829b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1830b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18311e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1832b5df2d14SHong Zhang     }
18338c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18348c07d4e3SBarry Smith 
1835b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1836ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1837b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1838b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1839b5e56a35SBarry Smith #endif
1840611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1841ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1842bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1843bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1844611f576cSBarry Smith #endif
1845611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1846ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
18475c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
18485c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1849611f576cSBarry Smith #endif
1850b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1851b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1852b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1853b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1854b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1855b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1856b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1857b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1858b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1859a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1860a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1861a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1862dfb205c3SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",
1863dfb205c3SBarry Smith                                      "MatMPISBAIJSetPreallocationCSR_MPISBAIJ",
1864dfb205c3SBarry Smith                                      MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1865aa5a9175SDahai Guo   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",
1866aa5a9175SDahai Guo                                      "MatConvert_MPISBAIJ_MPISBSTRM",
1867aa5a9175SDahai Guo                                       MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
1868aa5a9175SDahai Guo 
186923ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
187023ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
187123ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
187223ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
187317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1874b5df2d14SHong Zhang   PetscFunctionReturn(0);
1875b5df2d14SHong Zhang }
1876273d9f13SBarry Smith EXTERN_C_END
1877b5df2d14SHong Zhang 
1878209238afSKris Buschelman /*MC
1879002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1880209238afSKris Buschelman 
1881209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1882209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1883209238afSKris Buschelman 
1884209238afSKris Buschelman    Options Database Keys:
1885209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1886209238afSKris Buschelman 
1887209238afSKris Buschelman   Level: beginner
1888209238afSKris Buschelman 
1889209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1890209238afSKris Buschelman M*/
1891209238afSKris Buschelman 
18924a2ae208SSatish Balay #undef __FUNCT__
18934a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1894b5df2d14SHong Zhang /*@C
1895b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1896b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1897b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1898b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1899b5df2d14SHong Zhang 
1900b5df2d14SHong Zhang    Collective on Mat
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang    Input Parameters:
1903b5df2d14SHong Zhang +  A - the matrix
1904b5df2d14SHong Zhang .  bs   - size of blockk
1905b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1906b5df2d14SHong Zhang            submatrix  (same for all local rows)
1907b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19086d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
190995742e49SBarry Smith            (possibly different for each block row) or PETSC_NULL.  If you plan to factor the matrix you must leave room
191095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1911b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1912b5df2d14SHong Zhang            submatrix (same for all local rows).
1913b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1914c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
1915c2fc9fa9SBarry Smith            (possibly different for each block row) or PETSC_NULL.
1916b5df2d14SHong Zhang 
1917b5df2d14SHong Zhang 
1918b5df2d14SHong Zhang    Options Database Keys:
1919b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1920b5df2d14SHong Zhang                      block calculations (much slower)
1921b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1922b5df2d14SHong Zhang 
1923b5df2d14SHong Zhang    Notes:
1924b5df2d14SHong Zhang 
1925b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1926b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1927b5df2d14SHong Zhang 
192849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
192949a6f317SBarry Smith 
1930b5df2d14SHong Zhang    Storage Information:
1931b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1932b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1933b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1934b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1935b5df2d14SHong Zhang 
1936b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1937b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1938b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1939b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1940b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1941b5df2d14SHong Zhang 
1942aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1943aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1944aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1945aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1946aa95bbe8SBarry Smith 
1947b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1948b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1949b5df2d14SHong Zhang 
1950b5df2d14SHong Zhang .vb
1951b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1952b5df2d14SHong Zhang           -------------------
1953c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
1954c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
1955c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
1956b5df2d14SHong Zhang           -------------------
1957b5df2d14SHong Zhang .ve
1958b5df2d14SHong Zhang 
1959b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1960b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19616d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19626d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1963b5df2d14SHong Zhang 
19646d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19656d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1966c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
1967c2fc9fa9SBarry Smith 
1968b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1969b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1970b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1971b5df2d14SHong Zhang    matrices.
1972b5df2d14SHong Zhang 
1973b5df2d14SHong Zhang    Level: intermediate
1974b5df2d14SHong Zhang 
1975b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1976b5df2d14SHong Zhang 
197769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
1978b5df2d14SHong Zhang @*/
19797087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1980b5df2d14SHong Zhang {
19814ac538c5SBarry Smith   PetscErrorCode ierr;
1982b5df2d14SHong Zhang 
1983b5df2d14SHong Zhang   PetscFunctionBegin;
19846ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
19856ba663aaSJed Brown   PetscValidType(B,1);
19866ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
19874ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1988b5df2d14SHong Zhang   PetscFunctionReturn(0);
1989b5df2d14SHong Zhang }
1990b5df2d14SHong Zhang 
19914a2ae208SSatish Balay #undef __FUNCT__
199269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
1993a30f8f8cSSatish Balay /*@C
199469b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1995a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1996a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1997a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1998a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay    Collective on MPI_Comm
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay    Input Parameters:
2003a30f8f8cSSatish Balay +  comm - MPI communicator
2004a30f8f8cSSatish Balay .  bs   - size of blockk
2005a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2006a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2007a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2008a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2009a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2010a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2011a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2012a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2013a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2014a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2015a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20166d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20176d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
201895742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
201995742e49SBarry Smith            set its value even if it is zero.
2020a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2021a30f8f8cSSatish Balay            submatrix (same for all local rows).
2022a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2023a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
2024a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
2025a30f8f8cSSatish Balay 
2026a30f8f8cSSatish Balay    Output Parameter:
2027a30f8f8cSSatish Balay .  A - the matrix
2028a30f8f8cSSatish Balay 
2029a30f8f8cSSatish Balay    Options Database Keys:
2030a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2031a30f8f8cSSatish Balay                      block calculations (much slower)
2032a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2033a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2034a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2035a30f8f8cSSatish Balay 
2036175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2037ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2038175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2039175b88e8SBarry Smith 
2040a30f8f8cSSatish Balay    Notes:
2041d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20426d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2043d1be2dadSMatthew Knepley 
2044a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2045a30f8f8cSSatish Balay    (possibly both).
2046a30f8f8cSSatish Balay 
2047a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2048a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2049a30f8f8cSSatish Balay 
205049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
205149a6f317SBarry Smith 
2052a30f8f8cSSatish Balay    Storage Information:
2053a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2054a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2055a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2056a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2057a30f8f8cSSatish Balay 
2058a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2059a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
2060a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2061a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2062a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2063a30f8f8cSSatish Balay 
2064a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2065a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2066a30f8f8cSSatish Balay 
2067a30f8f8cSSatish Balay .vb
2068a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2069a30f8f8cSSatish Balay           -------------------
2070c2fc9fa9SBarry Smith    row 3  |  . . . d d d o o o o o o
2071c2fc9fa9SBarry Smith    row 4  |  . . . d d d o o o o o o
2072c2fc9fa9SBarry Smith    row 5  |  . . . d d d o o o o o o
2073a30f8f8cSSatish Balay           -------------------
2074a30f8f8cSSatish Balay .ve
2075a30f8f8cSSatish Balay 
2076a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2077a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20786d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20796d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2080a30f8f8cSSatish Balay 
20816d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20826d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2083a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2084a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2085a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2086a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2087a30f8f8cSSatish Balay    matrices.
2088a30f8f8cSSatish Balay 
2089a30f8f8cSSatish Balay    Level: intermediate
2090a30f8f8cSSatish Balay 
2091a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2092a30f8f8cSSatish Balay 
209369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2094a30f8f8cSSatish Balay @*/
2095a30f8f8cSSatish Balay 
209669b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2097a30f8f8cSSatish Balay {
20986849ba73SBarry Smith   PetscErrorCode ierr;
20991302d50aSBarry Smith   PetscMPIInt    size;
2100a30f8f8cSSatish Balay 
2101a30f8f8cSSatish Balay   PetscFunctionBegin;
2102f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2103f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2104273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2105273d9f13SBarry Smith   if (size > 1) {
2106b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2107b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2108273d9f13SBarry Smith   } else {
2109273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2110273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2111273d9f13SBarry Smith   }
2112a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2113a30f8f8cSSatish Balay }
2114a30f8f8cSSatish Balay 
2115a30f8f8cSSatish Balay 
21164a2ae208SSatish Balay #undef __FUNCT__
21174a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2119a30f8f8cSSatish Balay {
2120a30f8f8cSSatish Balay   Mat            mat;
2121a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2122dfbe8321SBarry Smith   PetscErrorCode ierr;
2123d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2124387bc808SHong Zhang   PetscScalar    *array;
2125a30f8f8cSSatish Balay 
2126a30f8f8cSSatish Balay   PetscFunctionBegin;
2127a30f8f8cSSatish Balay   *newmat       = 0;
21287adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2129d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21307adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21311d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21321e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21331e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2134e1b6402fSHong Zhang 
2135d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2136273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
213782327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21387fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21397fff6886SHong Zhang 
2140b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2141a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2142a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2143a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2144a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2145a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2146a30f8f8cSSatish Balay 
2147899cda47SBarry Smith 
2148a30f8f8cSSatish Balay   a->size         = oldmat->size;
2149a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2150a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2151a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2152a30f8f8cSSatish Balay   a->rowindices   = 0;
2153a30f8f8cSSatish Balay   a->rowvalues    = 0;
2154a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2155a30f8f8cSSatish Balay   a->barray       = 0;
2156899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2157899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2158899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2159899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2160a30f8f8cSSatish Balay 
2161a30f8f8cSSatish Balay   /* hash table stuff */
2162a30f8f8cSSatish Balay   a->ht           = 0;
2163a30f8f8cSSatish Balay   a->hd           = 0;
2164a30f8f8cSSatish Balay   a->ht_size      = 0;
2165a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2166a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2167a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2168a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2169a30f8f8cSSatish Balay 
2170899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2171a30f8f8cSSatish Balay   if (oldmat->colmap) {
2172a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2173a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2174a30f8f8cSSatish Balay #else
21751302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
217652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21771302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2178a30f8f8cSSatish Balay #endif
2179a30f8f8cSSatish Balay   } else a->colmap = 0;
2180387bc808SHong Zhang 
2181a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21821302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
218352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21841302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2185a30f8f8cSSatish Balay   } else a->garray = 0;
2186a30f8f8cSSatish Balay 
2187533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
218952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
219152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
219282327fa8SHong Zhang 
219382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
219452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
219582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
219652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2197387bc808SHong Zhang 
2198387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21991ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2200387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2201387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22021ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22031ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2204387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22051ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
220652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
220752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
220852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
220952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
221052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2211387bc808SHong Zhang 
2212387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2213387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2214387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
221552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
221682327fa8SHong Zhang 
2217a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
221852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2219a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
222052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
22217adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay   *newmat = mat;
2223a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2224a30f8f8cSSatish Balay }
2225a30f8f8cSSatish Balay 
22264a2ae208SSatish Balay #undef __FUNCT__
22275bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2228112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
222995936485SShri Abhyankar {
223095936485SShri Abhyankar   PetscErrorCode ierr;
223195936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
223295936485SShri Abhyankar   PetscScalar    *vals,*buf;
223395936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
223495936485SShri Abhyankar   MPI_Status     status;
223595936485SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
223695936485SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
223795936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
223895936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
223995936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
224095936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
224195936485SShri Abhyankar   int            fd;
224295936485SShri Abhyankar 
224395936485SShri Abhyankar   PetscFunctionBegin;
224495936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
224595936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
224695936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
224795936485SShri Abhyankar 
224895936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
224995936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
225095936485SShri Abhyankar   if (!rank) {
225195936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
225295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
225395936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
225495936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
225595936485SShri Abhyankar   }
225695936485SShri Abhyankar 
225795936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
225895936485SShri Abhyankar 
225995936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
226095936485SShri Abhyankar   M = header[1]; N = header[2];
226195936485SShri Abhyankar 
226295936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
226395936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
226495936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
226595936485SShri Abhyankar 
226695936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
226795936485SShri Abhyankar   if (sizesset) {
226895936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
226995936485SShri Abhyankar   }
2270abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2271abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
227295936485SShri Abhyankar 
227395936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
227495936485SShri Abhyankar 
227595936485SShri Abhyankar   /*
227695936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
227795936485SShri Abhyankar      divisible by the blocksize
227895936485SShri Abhyankar   */
227995936485SShri Abhyankar   Mbs        = M/bs;
228095936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
228195936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
228295936485SShri Abhyankar   else                  Mbs++;
228395936485SShri Abhyankar   if (extra_rows &&!rank) {
228495936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
228595936485SShri Abhyankar   }
228695936485SShri Abhyankar 
228795936485SShri Abhyankar   /* determine ownership of all rows */
228895936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
228995936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
229095936485SShri Abhyankar     m          = mbs*bs;
229195936485SShri Abhyankar   } else { /* User Set */
229295936485SShri Abhyankar     m          = newmat->rmap->n;
229395936485SShri Abhyankar     mbs        = m/bs;
229495936485SShri Abhyankar   }
229595936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
229695936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
229795936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
229895936485SShri Abhyankar   rowners[0] = 0;
229995936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
230095936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
230195936485SShri Abhyankar   rstart = rowners[rank];
230295936485SShri Abhyankar   rend   = rowners[rank+1];
230395936485SShri Abhyankar 
230495936485SShri Abhyankar   /* distribute row lengths to all processors */
230595936485SShri Abhyankar   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
230695936485SShri Abhyankar   if (!rank) {
230795936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
230895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
230995936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
231095936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
231195936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
231295936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
231395936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
231495936485SShri Abhyankar   } else {
231595936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
231695936485SShri Abhyankar   }
231795936485SShri Abhyankar 
231895936485SShri Abhyankar   if (!rank) {   /* procs[0] */
231995936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
232095936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
232195936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
232295936485SShri Abhyankar     for (i=0; i<size; i++) {
232395936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
232495936485SShri Abhyankar         procsnz[i] += rowlengths[j];
232595936485SShri Abhyankar       }
232695936485SShri Abhyankar     }
232795936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
232895936485SShri Abhyankar 
232995936485SShri Abhyankar     /* determine max buffer needed and allocate it */
233095936485SShri Abhyankar     maxnz = 0;
233195936485SShri Abhyankar     for (i=0; i<size; i++) {
233295936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
233395936485SShri Abhyankar     }
233495936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
233595936485SShri Abhyankar 
233695936485SShri Abhyankar     /* read in my part of the matrix column indices  */
233795936485SShri Abhyankar     nz     = procsnz[0];
233895936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
233995936485SShri Abhyankar     mycols = ibuf;
234095936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
234195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
234295936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
234395936485SShri Abhyankar 
234495936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
234595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
234695936485SShri Abhyankar       nz   = procsnz[i];
234795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
234895936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
234995936485SShri Abhyankar     }
235095936485SShri Abhyankar     /* read in the stuff for the last proc */
235195936485SShri Abhyankar     if (size != 1) {
235295936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
235395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
235495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
235595936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
235695936485SShri Abhyankar     }
235795936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
235895936485SShri Abhyankar   } else {  /* procs[i], i>0 */
235995936485SShri Abhyankar     /* determine buffer space needed for message */
236095936485SShri Abhyankar     nz = 0;
236195936485SShri Abhyankar     for (i=0; i<m; i++) {
236295936485SShri Abhyankar       nz += locrowlens[i];
236395936485SShri Abhyankar     }
236495936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
236595936485SShri Abhyankar     mycols = ibuf;
236695936485SShri Abhyankar     /* receive message of column indices*/
236795936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
236895936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
236995936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
237095936485SShri Abhyankar   }
237195936485SShri Abhyankar 
237295936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
237395936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
237495936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
237595936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
237695936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
237795936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
237895936485SShri Abhyankar   rowcount = 0;
237995936485SShri Abhyankar   nzcount  = 0;
238095936485SShri Abhyankar   for (i=0; i<mbs; i++) {
238195936485SShri Abhyankar     dcount  = 0;
238295936485SShri Abhyankar     odcount = 0;
238395936485SShri Abhyankar     for (j=0; j<bs; j++) {
238495936485SShri Abhyankar       kmax = locrowlens[rowcount];
238595936485SShri Abhyankar       for (k=0; k<kmax; k++) {
238695936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
238795936485SShri Abhyankar         if (!mask[tmp]) {
238895936485SShri Abhyankar           mask[tmp] = 1;
238995936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
239095936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
239195936485SShri Abhyankar         }
239295936485SShri Abhyankar       }
239395936485SShri Abhyankar       rowcount++;
239495936485SShri Abhyankar     }
239595936485SShri Abhyankar 
239695936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
239795936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
239895936485SShri Abhyankar 
239995936485SShri Abhyankar     /* zero out the mask elements we set */
240095936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
240195936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
240295936485SShri Abhyankar   }
240395936485SShri Abhyankar     if (!sizesset) {
240495936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
240595936485SShri Abhyankar   }
240695936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2407*6816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
240895936485SShri Abhyankar 
240995936485SShri Abhyankar   if (!rank) {
241095936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
241195936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
241295936485SShri Abhyankar     nz = procsnz[0];
241395936485SShri Abhyankar     vals = buf;
241495936485SShri Abhyankar     mycols = ibuf;
241595936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
241695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
241795936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
241895936485SShri Abhyankar 
241995936485SShri Abhyankar     /* insert into matrix */
242095936485SShri Abhyankar     jj      = rstart*bs;
242195936485SShri Abhyankar     for (i=0; i<m; i++) {
242295936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
242395936485SShri Abhyankar       mycols += locrowlens[i];
242495936485SShri Abhyankar       vals   += locrowlens[i];
242595936485SShri Abhyankar       jj++;
242695936485SShri Abhyankar     }
242795936485SShri Abhyankar 
242895936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
242995936485SShri Abhyankar     for (i=1; i<size-1; i++) {
243095936485SShri Abhyankar       nz   = procsnz[i];
243195936485SShri Abhyankar       vals = buf;
243295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
243395936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
243495936485SShri Abhyankar     }
243595936485SShri Abhyankar     /* the last proc */
243695936485SShri Abhyankar     if (size != 1){
243795936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
243895936485SShri Abhyankar       vals = buf;
243995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
244095936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
244195936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
244295936485SShri Abhyankar     }
244395936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
244495936485SShri Abhyankar 
244595936485SShri Abhyankar   } else {
244695936485SShri Abhyankar     /* receive numeric values */
244795936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
244895936485SShri Abhyankar 
244995936485SShri Abhyankar     /* receive message of values*/
245095936485SShri Abhyankar     vals   = buf;
245195936485SShri Abhyankar     mycols = ibuf;
245295936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
245395936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
245495936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
245595936485SShri Abhyankar 
245695936485SShri Abhyankar     /* insert into matrix */
245795936485SShri Abhyankar     jj      = rstart*bs;
245895936485SShri Abhyankar     for (i=0; i<m; i++) {
245995936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
246095936485SShri Abhyankar       mycols += locrowlens[i];
246195936485SShri Abhyankar       vals   += locrowlens[i];
246295936485SShri Abhyankar       jj++;
246395936485SShri Abhyankar     }
246495936485SShri Abhyankar   }
246595936485SShri Abhyankar 
246695936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
246795936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
246895936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
246995936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
247095936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
247195936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
247295936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
247395936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
247495936485SShri Abhyankar   PetscFunctionReturn(0);
247595936485SShri Abhyankar }
247695936485SShri Abhyankar 
247795936485SShri Abhyankar #undef __FUNCT__
24784a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2479dcf5cc72SBarry Smith /*XXXXX@
2480a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2481a30f8f8cSSatish Balay 
2482a30f8f8cSSatish Balay    Input Parameters:
2483a30f8f8cSSatish Balay .  mat  - the matrix
2484a30f8f8cSSatish Balay .  fact - factor
2485a30f8f8cSSatish Balay 
2486c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2487a30f8f8cSSatish Balay 
2488a30f8f8cSSatish Balay    Level: advanced
2489a30f8f8cSSatish Balay 
2490a30f8f8cSSatish Balay   Notes:
2491a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2492a30f8f8cSSatish Balay 
2493a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2494a30f8f8cSSatish Balay 
2495a30f8f8cSSatish Balay .seealso: MatSetOption()
2496dcf5cc72SBarry Smith @XXXXX*/
2497dcf5cc72SBarry Smith 
249824d5174aSHong Zhang 
24994a2ae208SSatish Balay #undef __FUNCT__
2500985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2501985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
250224d5174aSHong Zhang {
250324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2504f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2505ca54ac64SHong Zhang   PetscReal      atmp;
250687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2507dfbe8321SBarry Smith   PetscErrorCode ierr;
25081302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25091302d50aSBarry Smith   PetscMPIInt    rank,size;
25101302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
251187828ca2SBarry Smith   PetscScalar    *va;
25128a1c53f2SBarry Smith   MatScalar      *ba;
2513f4c0e9e4SHong Zhang   MPI_Status     stat;
251424d5174aSHong Zhang 
251524d5174aSHong Zhang   PetscFunctionBegin;
2516e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2517985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
25181ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2519f4c0e9e4SHong Zhang 
25207adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
25217adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2522f4c0e9e4SHong Zhang 
2523d0f46423SBarry Smith   bs   = A->rmap->bs;
2524f4c0e9e4SHong Zhang   mbs  = a->mbs;
2525f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2526f4c0e9e4SHong Zhang   ba   = b->a;
2527f4c0e9e4SHong Zhang   bi   = b->i;
2528f4c0e9e4SHong Zhang   bj   = b->j;
2529f4c0e9e4SHong Zhang 
2530f4c0e9e4SHong Zhang   /* find ownerships */
2531d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2532f4c0e9e4SHong Zhang 
2533f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
253482502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2535ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2536f4c0e9e4SHong Zhang 
2537f4c0e9e4SHong Zhang   /* row_max for B */
2538b8475685SHong Zhang   if (rank != size-1){
2539f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2540f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2541f4c0e9e4SHong Zhang       brow  = bs*i;
2542f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2543f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2544f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2545ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
254604d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2547f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2548f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2549ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2550ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2551f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2552f4c0e9e4SHong Zhang           }
2553f4c0e9e4SHong Zhang         }
2554f4c0e9e4SHong Zhang         bj++;
2555f4c0e9e4SHong Zhang       }
2556f4c0e9e4SHong Zhang     }
2557f4c0e9e4SHong Zhang 
2558f4c0e9e4SHong Zhang     /* send values to its owners */
2559f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2560f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2561ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
25627adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2563ca54ac64SHong Zhang     }
2564f4c0e9e4SHong Zhang   }
2565f4c0e9e4SHong Zhang 
2566f4c0e9e4SHong Zhang   /* receive values */
2567ca54ac64SHong Zhang   if (rank){
2568f4c0e9e4SHong Zhang     rvalues = work;
2569ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2570f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
25717adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2572f4c0e9e4SHong Zhang       /* process values */
2573f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2574ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2575f4c0e9e4SHong Zhang       }
2576f4c0e9e4SHong Zhang     }
2577ca54ac64SHong Zhang   }
2578f4c0e9e4SHong Zhang 
25791ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2580ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
258124d5174aSHong Zhang   PetscFunctionReturn(0);
258224d5174aSHong Zhang }
25832798e883SHong Zhang 
25842798e883SHong Zhang #undef __FUNCT__
258541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
258641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25872798e883SHong Zhang {
25882798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2589dfbe8321SBarry Smith   PetscErrorCode    ierr;
2590d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25913649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2592ffe4fb16SHong Zhang   Vec               bb1;
25933649974fSBarry Smith   const PetscScalar *b;
2594ffe4fb16SHong Zhang 
2595ffe4fb16SHong Zhang   PetscFunctionBegin;
2596e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2597e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2598ffe4fb16SHong Zhang 
2599a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
260041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2601a2b30743SBarry Smith     PetscFunctionReturn(0);
2602a2b30743SBarry Smith   }
2603a2b30743SBarry Smith 
2604ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2605ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
260641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2607ffe4fb16SHong Zhang       its--;
2608ffe4fb16SHong Zhang     }
2609ffe4fb16SHong Zhang 
2610ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2611ffe4fb16SHong Zhang     while (its--){
2612ffe4fb16SHong Zhang 
2613ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2614ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2615ffe4fb16SHong Zhang 
2616ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26171ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26181ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2619ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26201ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2621ffe4fb16SHong Zhang 
2622efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2623ffe4fb16SHong Zhang 
2624ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26251ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26263649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2627ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26281ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2629ffe4fb16SHong Zhang 
2630ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2631fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2632ffe4fb16SHong Zhang 
2633ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26341ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2635a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2636ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2637ffe4fb16SHong Zhang 
2638ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2639ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2640ffe4fb16SHong Zhang 
2641ffe4fb16SHong Zhang       /* local diagonal sweep */
264241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2643ffe4fb16SHong Zhang     }
26446bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2645fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
264641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2647fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
264841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2649fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2650fa22f6d0SBarry Smith     Vec               xx1;
2651ace3abfcSBarry Smith     PetscBool         hasop;
265220f1ed55SBarry Smith     const PetscScalar *diag;
2653887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
265420f1ed55SBarry Smith     PetscInt          i,n;
2655fa22f6d0SBarry Smith 
2656fa22f6d0SBarry Smith     if (!mat->xx1) {
2657fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2658fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2659fa22f6d0SBarry Smith     }
2660fa22f6d0SBarry Smith     xx1 = mat->xx1;
2661fa22f6d0SBarry Smith     bb1 = mat->bb1;
2662fa22f6d0SBarry Smith 
266341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2664fa22f6d0SBarry Smith 
2665fa22f6d0SBarry Smith     if (!mat->diag) {
2666effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2667fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2668fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2669fa22f6d0SBarry Smith     }
2670fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2671fa22f6d0SBarry Smith 
2672fa22f6d0SBarry Smith     if (hasop) {
2673fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2674887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
267520f1ed55SBarry Smith     } else {
267620f1ed55SBarry Smith       /*
267720f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
267820f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2679887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
268020f1ed55SBarry Smith       */
268120f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26823649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26833649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
268420f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
268520f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2686887ee2caSBarry Smith       if (omega == 1.0) {
268720f1ed55SBarry Smith 	for (i=0; i<n; i++) {
268820f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
268920f1ed55SBarry Smith 	}
269020f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2691887ee2caSBarry Smith       } else {
2692887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2693887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2694887ee2caSBarry Smith 	}
2695887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2696887ee2caSBarry Smith       }
269720f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26983649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26993649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
270020f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
270120f1ed55SBarry Smith     }
2702fa22f6d0SBarry Smith 
2703fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2704fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2705fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2706fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2707fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2708fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2709fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2710fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2711fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2712fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2713effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2714fa22f6d0SBarry Smith 
2715fa22f6d0SBarry Smith     /* local sweep */
271641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2717fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2718ffe4fb16SHong Zhang   } else {
2719e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2720ffe4fb16SHong Zhang   }
2721ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2722ffe4fb16SHong Zhang }
2723ffe4fb16SHong Zhang 
2724ffe4fb16SHong Zhang #undef __FUNCT__
272541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
272641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2727ffe4fb16SHong Zhang {
2728ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2729dfbe8321SBarry Smith   PetscErrorCode ierr;
27302798e883SHong Zhang   Vec            lvec1,bb1;
27312798e883SHong Zhang 
27322798e883SHong Zhang   PetscFunctionBegin;
2733e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2734e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27352798e883SHong Zhang 
2736c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
27372798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
273841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27392798e883SHong Zhang       its--;
27402798e883SHong Zhang     }
27412798e883SHong Zhang 
27422798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27432798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27442798e883SHong Zhang     while (its--){
2745ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27462798e883SHong Zhang 
27472798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27482798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2749efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27502798e883SHong Zhang 
2751ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27522798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2753ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27542798e883SHong Zhang 
27552798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2756efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27572798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27582798e883SHong Zhang 
2759ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27602798e883SHong Zhang 
2761c14dc6b6SHong Zhang       /* diagonal sweep */
276241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27632798e883SHong Zhang     }
27646bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27656bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27666bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27672798e883SHong Zhang   PetscFunctionReturn(0);
27682798e883SHong Zhang }
27692798e883SHong Zhang 
2770dfb205c3SBarry Smith #undef __FUNCT__
2771dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2772dfb205c3SBarry Smith /*@
2773dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2774dfb205c3SBarry Smith          CSR format the local rows.
2775dfb205c3SBarry Smith 
2776dfb205c3SBarry Smith    Collective on MPI_Comm
2777dfb205c3SBarry Smith 
2778dfb205c3SBarry Smith    Input Parameters:
2779dfb205c3SBarry Smith +  comm - MPI communicator
2780dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2781dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2782dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2783dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2784dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2785dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2786dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2787dfb205c3SBarry Smith .   i - row indices
2788dfb205c3SBarry Smith .   j - column indices
2789dfb205c3SBarry Smith -   a - matrix values
2790dfb205c3SBarry Smith 
2791dfb205c3SBarry Smith    Output Parameter:
2792dfb205c3SBarry Smith .   mat - the matrix
2793dfb205c3SBarry Smith 
2794dfb205c3SBarry Smith    Level: intermediate
2795dfb205c3SBarry Smith 
2796dfb205c3SBarry Smith    Notes:
2797dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2798dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2799dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2800dfb205c3SBarry Smith 
2801dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2802dfb205c3SBarry Smith 
2803dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2804dfb205c3SBarry Smith 
2805dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
280669b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2807dfb205c3SBarry Smith @*/
28087087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2809dfb205c3SBarry Smith {
2810dfb205c3SBarry Smith   PetscErrorCode ierr;
2811dfb205c3SBarry Smith 
2812dfb205c3SBarry Smith 
2813dfb205c3SBarry Smith  PetscFunctionBegin;
2814dfb205c3SBarry Smith   if (i[0]) {
2815dfb205c3SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2816dfb205c3SBarry Smith   }
2817dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2818dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2819dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2820dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2821dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2822dfb205c3SBarry Smith   PetscFunctionReturn(0);
2823dfb205c3SBarry Smith }
2824dfb205c3SBarry Smith 
2825dfb205c3SBarry Smith 
2826dfb205c3SBarry Smith #undef __FUNCT__
2827dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2828dfb205c3SBarry Smith /*@C
2829dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2830dfb205c3SBarry Smith    (the default parallel PETSc format).
2831dfb205c3SBarry Smith 
2832dfb205c3SBarry Smith    Collective on MPI_Comm
2833dfb205c3SBarry Smith 
2834dfb205c3SBarry Smith    Input Parameters:
2835dfb205c3SBarry Smith +  A - the matrix
2836dfb205c3SBarry Smith .  bs - the block size
2837dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2838dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2839dfb205c3SBarry Smith -  v - optional values in the matrix
2840dfb205c3SBarry Smith 
2841dfb205c3SBarry Smith    Level: developer
2842dfb205c3SBarry Smith 
2843dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2844dfb205c3SBarry Smith 
284569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2846dfb205c3SBarry Smith @*/
28477087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2848dfb205c3SBarry Smith {
28494ac538c5SBarry Smith   PetscErrorCode ierr;
2850dfb205c3SBarry Smith 
2851dfb205c3SBarry Smith   PetscFunctionBegin;
28524ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2853dfb205c3SBarry Smith   PetscFunctionReturn(0);
2854dfb205c3SBarry Smith }
2855dfb205c3SBarry Smith 
2856dfb205c3SBarry Smith 
2857