1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 909573ac7SBarry Smith extern PetscErrorCode DisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 267087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 55a30f8f8cSSatish Balay { \ 56a30f8f8cSSatish Balay \ 57a30f8f8cSSatish Balay brow = row/bs; \ 58a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 59a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 60a30f8f8cSSatish Balay bcol = col/bs; \ 61a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 62a30f8f8cSSatish Balay low = 0; high = nrow; \ 63a30f8f8cSSatish Balay while (high-low > 3) { \ 64a30f8f8cSSatish Balay t = (low+high)/2; \ 65a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 66a30f8f8cSSatish Balay else low = t; \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 69a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 70a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 71a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 72a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 73a30f8f8cSSatish Balay else *bap = value; \ 74a30f8f8cSSatish Balay goto a_noinsert; \ 75a30f8f8cSSatish Balay } \ 76a30f8f8cSSatish Balay } \ 77a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 78e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 79fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 80a30f8f8cSSatish Balay N = nrow++ - 1; \ 81a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 82a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 83a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 84a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 85a30f8f8cSSatish Balay } \ 86a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 87a30f8f8cSSatish Balay rp[_i] = bcol; \ 88a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 89a30f8f8cSSatish Balay a_noinsert:; \ 90a30f8f8cSSatish Balay ailen[brow] = nrow; \ 91a30f8f8cSSatish Balay } 92e5e170daSBarry Smith 93a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 94a30f8f8cSSatish Balay { \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 97a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto b_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 116e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 117fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 118a30f8f8cSSatish Balay N = nrow++ - 1; \ 119a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 120a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 121a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 122a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay } \ 124a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 125a30f8f8cSSatish Balay rp[_i] = bcol; \ 126a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa=a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba=b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 163910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 164910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 16771fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 168a30f8f8cSSatish Balay if (!baij->donotstash){ 16959ffdab8SBarry Smith if (n > baij->n_loc) { 17059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17259ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 18901b2bd88SHong Zhang if (a->ignore_ltriangular){ 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19101b2bd88SHong Zhang } else { 192e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19301b2bd88SHong Zhang } 19401b2bd88SHong Zhang } 195a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 196a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 197a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 198a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 199a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 200a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 201a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 202a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 204cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 205a30f8f8cSSatish Balay #endif 206a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 207a30f8f8cSSatish Balay if (mat->was_assembled) { 208a30f8f8cSSatish Balay if (!baij->colmap) { 209653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 210a30f8f8cSSatish Balay } 211a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 212a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21371730473SSatish Balay col = col - 1; 214a30f8f8cSSatish Balay #else 21571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 216a30f8f8cSSatish Balay #endif 217a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 218a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 219a30f8f8cSSatish Balay col = in[j]; 220a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 221a30f8f8cSSatish Balay B = baij->B; 222a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 223a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 224a30f8f8cSSatish Balay ba=b->a; 22571730473SSatish Balay } else col += in[j]%bs; 226a30f8f8cSSatish Balay } else col = in[j]; 227a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 228a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 229a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } else { /* off processor entry */ 2334cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 234a30f8f8cSSatish Balay if (!baij->donotstash) { 2355080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 261ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 281e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286f3f98c53SJed Brown if (im[i] > in[j]) { 287f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3120880e062SHong Zhang } 3130880e062SHong Zhang else if (in[j] < 0) continue; 3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 315cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3160880e062SHong Zhang #endif 3170880e062SHong Zhang else { 3180880e062SHong Zhang if (mat->was_assembled) { 3190880e062SHong Zhang if (!baij->colmap) { 320653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3210880e062SHong Zhang } 3220880e062SHong Zhang 3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3251302d50aSBarry Smith { PetscInt data; 3260880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 327e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3280880e062SHong Zhang } 3290880e062SHong Zhang #else 330e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #endif 3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3340880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3350880e062SHong Zhang col = (col - 1)/bs; 3360880e062SHong Zhang #else 3370880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3380880e062SHong Zhang #endif 3390880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3400880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3410880e062SHong Zhang col = in[j]; 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang else col = in[j]; 345e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3460880e062SHong Zhang } 3470880e062SHong Zhang } 3480880e062SHong Zhang } else { 3494cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3500880e062SHong Zhang if (!baij->donotstash) { 3510880e062SHong Zhang if (roworiented) { 3520880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } else { 3540880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang } 3590880e062SHong Zhang PetscFunctionReturn(0); 360a30f8f8cSSatish Balay } 361a30f8f8cSSatish Balay 3624a2ae208SSatish Balay #undef __FUNCT__ 3634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3641302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 365a30f8f8cSSatish Balay { 366f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3676849ba73SBarry Smith PetscErrorCode ierr; 368d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 369d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 370a30f8f8cSSatish Balay 371a30f8f8cSSatish Balay PetscFunctionBegin; 372a30f8f8cSSatish Balay for (i=0; i<m; i++) { 373e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 374e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 375a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 376a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 377a30f8f8cSSatish Balay for (j=0; j<n; j++) { 378e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 379e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 380a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 381a30f8f8cSSatish Balay col = idxn[j] - bscstart; 382c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } else { 384a30f8f8cSSatish Balay if (!baij->colmap) { 385653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 386a30f8f8cSSatish Balay } 387a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 388a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 389a30f8f8cSSatish Balay data --; 390a30f8f8cSSatish Balay #else 391a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 392a30f8f8cSSatish Balay #endif 393a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 394a30f8f8cSSatish Balay else { 395a30f8f8cSSatish Balay col = data + idxn[j]%bs; 396e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } else { 401e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay PetscFunctionReturn(0); 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay 4074a2ae208SSatish Balay #undef __FUNCT__ 4084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 409dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 410a30f8f8cSSatish Balay { 411a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 412dfbe8321SBarry Smith PetscErrorCode ierr; 413a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 414a30f8f8cSSatish Balay 415a30f8f8cSSatish Balay PetscFunctionBegin; 416a30f8f8cSSatish Balay if (baij->size == 1) { 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } else { 419a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 420f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 422a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 423a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 425d9822059SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4268f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 427a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4280b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4290b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4300b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4310b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 432899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 433d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4340b8dc8d2SHong Zhang MatScalar *v; 4350b8dc8d2SHong Zhang 43674ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 437d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4380b8dc8d2SHong Zhang /* Amat */ 4390b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4400b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4410b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4420b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4430b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4440b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4450b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4460b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4470b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4480b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4490b8dc8d2SHong Zhang /* non-diagonal block */ 4500b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang } 4550b8dc8d2SHong Zhang /* Bmat */ 4560b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4570b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4580b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4590b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4600b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4610b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4620b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4630b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4640b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4650b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4660b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 4700b8dc8d2SHong Zhang } 471d9822059SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4720b8dc8d2SHong Zhang *norm = 0.0; 473d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4740b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4750b8dc8d2SHong Zhang } 47674ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay PetscFunctionReturn(0); 482a30f8f8cSSatish Balay } 483a30f8f8cSSatish Balay 4844a2ae208SSatish Balay #undef __FUNCT__ 4854a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 486dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 487a30f8f8cSSatish Balay { 488a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 489dfbe8321SBarry Smith PetscErrorCode ierr; 4901302d50aSBarry Smith PetscInt nstash,reallocs; 491a30f8f8cSSatish Balay InsertMode addv; 492a30f8f8cSSatish Balay 493a30f8f8cSSatish Balay PetscFunctionBegin; 4944cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 495a30f8f8cSSatish Balay PetscFunctionReturn(0); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay 498a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4997adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 500e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 501a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 502a30f8f8cSSatish Balay 503d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5081e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 509a30f8f8cSSatish Balay PetscFunctionReturn(0); 510a30f8f8cSSatish Balay } 511a30f8f8cSSatish Balay 5124a2ae208SSatish Balay #undef __FUNCT__ 5134a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 514dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 515a30f8f8cSSatish Balay { 516a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 517a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5186849ba73SBarry Smith PetscErrorCode ierr; 51913f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 520e44c0bd4SBarry Smith PetscInt *row,*col; 521ace3abfcSBarry Smith PetscBool other_disassembled; 52213f74950SBarry Smith PetscMPIInt n; 523ace3abfcSBarry Smith PetscBool r1,r2,r3; 524a30f8f8cSSatish Balay MatScalar *val; 525a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 526a30f8f8cSSatish Balay 52791c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 528a30f8f8cSSatish Balay PetscFunctionBegin; 529a30f8f8cSSatish Balay 5304cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 531a30f8f8cSSatish Balay while (1) { 532a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 533a30f8f8cSSatish Balay if (!flg) break; 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay for (i=0; i<n;) { 536a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 537a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 538a30f8f8cSSatish Balay if (j < n) ncols = j-i; 539a30f8f8cSSatish Balay else ncols = n-i; 540a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 541dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 542a30f8f8cSSatish Balay i = j; 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 546a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 547a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 548a30f8f8cSSatish Balay restore the original flags */ 549a30f8f8cSSatish Balay r1 = baij->roworiented; 550a30f8f8cSSatish Balay r2 = a->roworiented; 55191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 552a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 553a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 555a30f8f8cSSatish Balay while (1) { 556a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 557a30f8f8cSSatish Balay if (!flg) break; 558a30f8f8cSSatish Balay 559a30f8f8cSSatish Balay for (i=0; i<n;) { 560a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 561a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 562a30f8f8cSSatish Balay if (j < n) ncols = j-i; 563a30f8f8cSSatish Balay else ncols = n-i; 564dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 565a30f8f8cSSatish Balay i = j; 566a30f8f8cSSatish Balay } 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 569a30f8f8cSSatish Balay baij->roworiented = r1; 570a30f8f8cSSatish Balay a->roworiented = r2; 57191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 574a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 576a30f8f8cSSatish Balay 577a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 578a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 579a30f8f8cSSatish Balay /* 580a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 581a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 582a30f8f8cSSatish Balay */ 583a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5847adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 585a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 586c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay 590a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59140781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 592a30f8f8cSSatish Balay } 593cd6b891eSBarry Smith ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr); 594a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 595a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 596a30f8f8cSSatish Balay 59774ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 598a30f8f8cSSatish Balay baij->rowvalues = 0; 5995222a1afSHong Zhang 600a30f8f8cSSatish Balay PetscFunctionReturn(0); 601a30f8f8cSSatish Balay } 602a30f8f8cSSatish Balay 603dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6044a2ae208SSatish Balay #undef __FUNCT__ 6054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6066849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 607a30f8f8cSSatish Balay { 608a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 609dfbe8321SBarry Smith PetscErrorCode ierr; 610d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6111302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 612ace3abfcSBarry Smith PetscBool iascii,isdraw; 613b0a32e0cSBarry Smith PetscViewer sviewer; 614f3ef73ceSBarry Smith PetscViewerFormat format; 615a30f8f8cSSatish Balay 616a30f8f8cSSatish Balay PetscFunctionBegin; 6172692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6182692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61932077d6dSBarry Smith if (iascii) { 620b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 621456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 622a30f8f8cSSatish Balay MatInfo info; 6237adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 624a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6257b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6267b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 627a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 628e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 629a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 630e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 631b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6327b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 634a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 635a30f8f8cSSatish Balay PetscFunctionReturn(0); 636fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 638a30f8f8cSSatish Balay PetscFunctionReturn(0); 639c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 640c1490034SHong Zhang PetscFunctionReturn(0); 641a30f8f8cSSatish Balay } 642a30f8f8cSSatish Balay } 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay if (isdraw) { 645b0a32e0cSBarry Smith PetscDraw draw; 646ace3abfcSBarry Smith PetscBool isnull; 647b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 648b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay if (size == 1) { 6527adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 653a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 654a30f8f8cSSatish Balay } else { 655a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 656a30f8f8cSSatish Balay Mat A; 65765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 659d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 660a30f8f8cSSatish Balay MatScalar *a; 661a30f8f8cSSatish Balay 662f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6637adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (!rank) { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } else { 667f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } 669f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 670d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 6712b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 67252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay /* copy over the A part */ 67565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 676a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6771302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 678a30f8f8cSSatish Balay 679a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 680e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 681a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 682a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 683e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 684a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 685dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 686a30f8f8cSSatish Balay col++; a += bs; 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay /* copy over the B part */ 69165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 693a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 694e9f7bc9eSHong Zhang 695e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 696a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 697a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 698a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 699a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 700799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 701a30f8f8cSSatish Balay col++; a += bs; 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 706a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 707a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 708a30f8f8cSSatish Balay /* 709a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 710b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 711a30f8f8cSSatish Balay */ 712b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71365d70643SHong Zhang if (!rank) { 7147adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7157566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 7167566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ); 717a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 718a30f8f8cSSatish Balay } 719b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7206bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 721a30f8f8cSSatish Balay } 722a30f8f8cSSatish Balay PetscFunctionReturn(0); 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay 7254a2ae208SSatish Balay #undef __FUNCT__ 7264a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 727dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 728a30f8f8cSSatish Balay { 729dfbe8321SBarry Smith PetscErrorCode ierr; 730ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 731a30f8f8cSSatish Balay 732a30f8f8cSSatish Balay PetscFunctionBegin; 7332692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 7342692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7352692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 7362692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73732077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 738a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 739a30f8f8cSSatish Balay } else { 740e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 741a30f8f8cSSatish Balay } 742a30f8f8cSSatish Balay PetscFunctionReturn(0); 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay 7454a2ae208SSatish Balay #undef __FUNCT__ 7464a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 747dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 748a30f8f8cSSatish Balay { 749a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 750dfbe8321SBarry Smith PetscErrorCode ierr; 751a30f8f8cSSatish Balay 752a30f8f8cSSatish Balay PetscFunctionBegin; 753a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 754d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 755a30f8f8cSSatish Balay #endif 756a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7586bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7596bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 760a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7616bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 762a30f8f8cSSatish Balay #else 76305b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 764a30f8f8cSSatish Balay #endif 76505b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7676bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7745755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77605b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7776bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7786bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7796bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 780ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78105b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 782a30f8f8cSSatish Balay #endif 78359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 785899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 786bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 787901853e0SKris Buschelman 788dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 789901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 793aa5a9175SDahai Guo ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C","",PETSC_NULL);CHKERRQ(ierr); 794a30f8f8cSSatish Balay PetscFunctionReturn(0); 795a30f8f8cSSatish Balay } 796a30f8f8cSSatish Balay 7974a2ae208SSatish Balay #undef __FUNCT__ 798547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 799547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 800547795f9SHong Zhang { 801547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 802547795f9SHong Zhang PetscErrorCode ierr; 803547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 804547795f9SHong Zhang PetscScalar *x,*from; 805547795f9SHong Zhang 806547795f9SHong Zhang PetscFunctionBegin; 807547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 808e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 809547795f9SHong Zhang 810547795f9SHong Zhang /* diagonal part */ 811547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 812547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 813547795f9SHong Zhang 814547795f9SHong Zhang /* subdiagonal part */ 815547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* copy x into the vec slvec0 */ 818547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 819547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 820547795f9SHong Zhang 821547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 823547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 824547795f9SHong Zhang 825547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827547795f9SHong Zhang /* supperdiagonal part */ 828547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 829547795f9SHong Zhang PetscFunctionReturn(0); 830547795f9SHong Zhang } 831547795f9SHong Zhang 832547795f9SHong Zhang #undef __FUNCT__ 833a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 835a9d4b620SHong Zhang { 836a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 837dfbe8321SBarry Smith PetscErrorCode ierr; 838d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 839fa22f6d0SBarry Smith PetscScalar *x,*from; 840a9d4b620SHong Zhang 841a9d4b620SHong Zhang PetscFunctionBegin; 842a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 843e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 844a9d4b620SHong Zhang 845a9d4b620SHong Zhang /* diagonal part */ 846a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 847fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 848a9d4b620SHong Zhang 849a9d4b620SHong Zhang /* subdiagonal part */ 850a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 851fc165ae2SBarry Smith 852a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8531ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 855a9d4b620SHong Zhang 856fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 857fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8581ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 859fc165ae2SBarry Smith 860fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 861ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 862a9d4b620SHong Zhang /* supperdiagonal part */ 863a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 864a9d4b620SHong Zhang PetscFunctionReturn(0); 865a9d4b620SHong Zhang } 866a9d4b620SHong Zhang 867a9d4b620SHong Zhang #undef __FUNCT__ 86840781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 869dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 870a30f8f8cSSatish Balay { 871a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 872dfbe8321SBarry Smith PetscErrorCode ierr; 8731302d50aSBarry Smith PetscInt nt; 874a30f8f8cSSatish Balay 875a30f8f8cSSatish Balay PetscFunctionBegin; 876a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 877e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 878e7e72b3dSBarry Smith 879a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 880e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88165d70643SHong Zhang 882ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 883b941877fSHong Zhang /* do diagonal part */ 884b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 885b941877fSHong Zhang /* do supperdiagonal part */ 886ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 887b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 888b941877fSHong Zhang /* do subdiagonal part */ 889b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 890ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 891ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89265d70643SHong Zhang 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 8964a2ae208SSatish Balay #undef __FUNCT__ 8974a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 898dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 899a30f8f8cSSatish Balay { 900de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 901dfbe8321SBarry Smith PetscErrorCode ierr; 902d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 903a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang PetscFunctionBegin; 906a9d4b620SHong Zhang /* 9077adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9087adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 909a9d4b620SHong Zhang */ 910a9d4b620SHong Zhang /* diagonal part */ 911a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9122dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang /* subdiagonal part */ 915a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 916a9d4b620SHong Zhang 917a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9181ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9191ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 920a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9211ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 922a9d4b620SHong Zhang 923ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 925ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 926a9d4b620SHong Zhang 927a9d4b620SHong Zhang /* supperdiagonal part */ 928a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 929a9d4b620SHong Zhang 930a9d4b620SHong Zhang PetscFunctionReturn(0); 931a9d4b620SHong Zhang } 932a9d4b620SHong Zhang 933a9d4b620SHong Zhang #undef __FUNCT__ 934a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 935dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 936a9d4b620SHong Zhang { 937a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 938dfbe8321SBarry Smith PetscErrorCode ierr; 939a30f8f8cSSatish Balay 940a30f8f8cSSatish Balay PetscFunctionBegin; 941ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 942b941877fSHong Zhang /* do diagonal part */ 943b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 944b941877fSHong Zhang /* do supperdiagonal part */ 945ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 946de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 947de8b6608SHong Zhang 948b941877fSHong Zhang /* do subdiagonal part */ 949a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 950ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 951ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 952aa482183SHong Zhang 953a30f8f8cSSatish Balay PetscFunctionReturn(0); 954a30f8f8cSSatish Balay } 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay /* 957a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 958a30f8f8cSSatish Balay diagonal block 959a30f8f8cSSatish Balay */ 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 962dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 963a30f8f8cSSatish Balay { 964a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966a30f8f8cSSatish Balay 967a30f8f8cSSatish Balay PetscFunctionBegin; 968e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 969a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 970a30f8f8cSSatish Balay PetscFunctionReturn(0); 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay 9734a2ae208SSatish Balay #undef __FUNCT__ 9744a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 975f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 976a30f8f8cSSatish Balay { 977a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 978dfbe8321SBarry Smith PetscErrorCode ierr; 979a30f8f8cSSatish Balay 980a30f8f8cSSatish Balay PetscFunctionBegin; 981f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 982f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 983a30f8f8cSSatish Balay PetscFunctionReturn(0); 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9881302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 989a30f8f8cSSatish Balay { 990d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 991d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 992d0d4cfc2SHong Zhang PetscErrorCode ierr; 993d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 994d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 995899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 996d0d4cfc2SHong Zhang 997a30f8f8cSSatish Balay PetscFunctionBegin; 998e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 999d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1000d0d4cfc2SHong Zhang 1001d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1002d0d4cfc2SHong Zhang /* 1003d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1004d0d4cfc2SHong Zhang */ 1005d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1006d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1007d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1008d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1009d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1010d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1011d0d4cfc2SHong Zhang } 101274ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1013d0d4cfc2SHong Zhang } 1014d0d4cfc2SHong Zhang 1015e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1016d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1019d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1020d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1021d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1022d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1023d0d4cfc2SHong Zhang nztot = nzA + nzB; 1024d0d4cfc2SHong Zhang 1025d0d4cfc2SHong Zhang cmap = mat->garray; 1026d0d4cfc2SHong Zhang if (v || idx) { 1027d0d4cfc2SHong Zhang if (nztot) { 1028d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1029d0d4cfc2SHong Zhang PetscInt imark = -1; 1030d0d4cfc2SHong Zhang if (v) { 1031d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1032d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1033d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1034d0d4cfc2SHong Zhang else break; 1035d0d4cfc2SHong Zhang } 1036d0d4cfc2SHong Zhang imark = i; 1037d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1038d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang if (idx) { 1041d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1042d0d4cfc2SHong Zhang if (imark > -1) { 1043d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1044d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang } else { 1047d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1048d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1049d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1050d0d4cfc2SHong Zhang else break; 1051d0d4cfc2SHong Zhang } 1052d0d4cfc2SHong Zhang imark = i; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1055d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1056d0d4cfc2SHong Zhang } 1057d0d4cfc2SHong Zhang } else { 1058d0d4cfc2SHong Zhang if (idx) *idx = 0; 1059d0d4cfc2SHong Zhang if (v) *v = 0; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang *nz = nztot; 1063d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1064d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1065a30f8f8cSSatish Balay PetscFunctionReturn(0); 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1071a30f8f8cSSatish Balay { 1072a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1073a30f8f8cSSatish Balay 1074a30f8f8cSSatish Balay PetscFunctionBegin; 1075e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1076a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1077a30f8f8cSSatish Balay PetscFunctionReturn(0); 1078a30f8f8cSSatish Balay } 1079a30f8f8cSSatish Balay 10804a2ae208SSatish Balay #undef __FUNCT__ 1081d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1082d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1083d0d4cfc2SHong Zhang { 1084d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1085d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1086d0d4cfc2SHong Zhang 1087d0d4cfc2SHong Zhang PetscFunctionBegin; 1088d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1089d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1090d0d4cfc2SHong Zhang } 1091d0d4cfc2SHong Zhang #undef __FUNCT__ 1092d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1093d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1094d0d4cfc2SHong Zhang { 1095d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1096d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1097d0d4cfc2SHong Zhang 1098d0d4cfc2SHong Zhang PetscFunctionBegin; 1099d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1100d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1101d0d4cfc2SHong Zhang } 1102d0d4cfc2SHong Zhang 1103d0d4cfc2SHong Zhang #undef __FUNCT__ 110499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110699cafbc1SBarry Smith { 110799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110899cafbc1SBarry Smith PetscErrorCode ierr; 110999cafbc1SBarry Smith 111099cafbc1SBarry Smith PetscFunctionBegin; 111199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111399cafbc1SBarry Smith PetscFunctionReturn(0); 111499cafbc1SBarry Smith } 111599cafbc1SBarry Smith 111699cafbc1SBarry Smith #undef __FUNCT__ 111799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111999cafbc1SBarry Smith { 112099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112199cafbc1SBarry Smith PetscErrorCode ierr; 112299cafbc1SBarry Smith 112399cafbc1SBarry Smith PetscFunctionBegin; 112499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112699cafbc1SBarry Smith PetscFunctionReturn(0); 112799cafbc1SBarry Smith } 112899cafbc1SBarry Smith 112999cafbc1SBarry Smith #undef __FUNCT__ 11304a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1131dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1132a30f8f8cSSatish Balay { 1133a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1134dfbe8321SBarry Smith PetscErrorCode ierr; 1135a30f8f8cSSatish Balay 1136a30f8f8cSSatish Balay PetscFunctionBegin; 1137a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay PetscFunctionReturn(0); 1140a30f8f8cSSatish Balay } 1141a30f8f8cSSatish Balay 11424a2ae208SSatish Balay #undef __FUNCT__ 11434a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1144dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1145a30f8f8cSSatish Balay { 1146a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1147a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1148dfbe8321SBarry Smith PetscErrorCode ierr; 1149a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay PetscFunctionBegin; 1152d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1153a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1154a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1155a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1156a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1157a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1158a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1159a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1160a30f8f8cSSatish Balay info->nz_used = isend[0]; 1161a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1162a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1163a30f8f8cSSatish Balay info->memory = isend[3]; 1164a30f8f8cSSatish Balay info->mallocs = isend[4]; 1165a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1166d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1168a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1169a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1170a30f8f8cSSatish Balay info->memory = irecv[3]; 1171a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1172a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1173d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1175a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1176a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1177a30f8f8cSSatish Balay info->memory = irecv[3]; 1178a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1179a30f8f8cSSatish Balay } else { 1180e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1183a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1184a30f8f8cSSatish Balay info->factor_mallocs = 0; 1185a30f8f8cSSatish Balay PetscFunctionReturn(0); 1186a30f8f8cSSatish Balay } 1187a30f8f8cSSatish Balay 11884a2ae208SSatish Balay #undef __FUNCT__ 11894a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1190ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1191a30f8f8cSSatish Balay { 1192a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1193d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1194dfbe8321SBarry Smith PetscErrorCode ierr; 1195a30f8f8cSSatish Balay 1196a30f8f8cSSatish Balay PetscFunctionBegin; 1197e98b92d7SKris Buschelman switch (op) { 1198512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1199e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1201a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1202e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12034e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12044e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1205e98b92d7SKris Buschelman break; 1206e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12074e0d8c25SBarry Smith a->roworiented = flg; 12084e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12094e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1210e98b92d7SKris Buschelman break; 12114e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1212290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12154e0d8c25SBarry Smith a->donotstash = flg; 1216e98b92d7SKris Buschelman break; 1217e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12184e0d8c25SBarry Smith a->ht_flag = flg; 1219e98b92d7SKris Buschelman break; 12209a4540c5SBarry Smith case MAT_HERMITIAN: 1221e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1222eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1223547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1224eeffb40dSHong Zhang break; 1225ffa07934SHong Zhang case MAT_SPD: 1226ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1227ffa07934SHong Zhang A->spd = flg; 1228ffa07934SHong Zhang if (flg) { 1229ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1230ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1231ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1232ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1233ffa07934SHong Zhang } 1234ffa07934SHong Zhang break; 123577e54ba9SKris Buschelman case MAT_SYMMETRIC: 1236eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1237eeffb40dSHong Zhang break; 123877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1239eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1240eeffb40dSHong Zhang break; 12419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1242e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1243290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124477e54ba9SKris Buschelman break; 1245d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12464e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1247d0d4cfc2SHong Zhang break; 1248d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12494e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1250d0d4cfc2SHong Zhang break; 1251d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12524e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1253d0d4cfc2SHong Zhang break; 1254e98b92d7SKris Buschelman default: 1255e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1263a30f8f8cSSatish Balay { 1264dfbe8321SBarry Smith PetscErrorCode ierr; 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1267999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1268fc4dec0aSBarry Smith } 12698115998fSBarry Smith PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12724a2ae208SSatish Balay #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1275a30f8f8cSSatish Balay { 1276a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1277a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1278dfbe8321SBarry Smith PetscErrorCode ierr; 12795e90f9d9SHong Zhang PetscInt nv,m,n; 1280ace3abfcSBarry Smith PetscBool flg; 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay PetscFunctionBegin; 1283a30f8f8cSSatish Balay if (ll != rr){ 1284b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1285e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1286a30f8f8cSSatish Balay } 1287b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1288b3bf805bSHong Zhang 12895e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1290e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1291b3bf805bSHong Zhang 12925e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1293e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12945e90f9d9SHong Zhang 1295ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12965e90f9d9SHong Zhang 12975e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1298a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12995e90f9d9SHong Zhang 13005e90f9d9SHong Zhang /* scale the diagonal part */ 1301a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay 13035e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1304ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay PetscFunctionReturn(0); 1307a30f8f8cSSatish Balay } 1308a30f8f8cSSatish Balay 13094a2ae208SSatish Balay #undef __FUNCT__ 13104a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1311dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1312a30f8f8cSSatish Balay { 1313f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1314dfbe8321SBarry Smith PetscErrorCode ierr; 1315a30f8f8cSSatish Balay 1316a30f8f8cSSatish Balay PetscFunctionBegin; 1317a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay PetscFunctionReturn(0); 1319a30f8f8cSSatish Balay } 1320a30f8f8cSSatish Balay 13216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1322a30f8f8cSSatish Balay 13234a2ae208SSatish Balay #undef __FUNCT__ 13244a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1325ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1326a30f8f8cSSatish Balay { 1327a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1328a30f8f8cSSatish Balay Mat a,b,c,d; 1329ace3abfcSBarry Smith PetscBool flg; 1330dfbe8321SBarry Smith PetscErrorCode ierr; 1331a30f8f8cSSatish Balay 1332a30f8f8cSSatish Balay PetscFunctionBegin; 1333a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1334a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1335a30f8f8cSSatish Balay 1336a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1337abc0a331SBarry Smith if (flg) { 1338a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay } 13407adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay PetscFunctionReturn(0); 1342a30f8f8cSSatish Balay } 1343a30f8f8cSSatish Balay 13444a2ae208SSatish Balay #undef __FUNCT__ 13453c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13473c896bc6SHong Zhang { 13483c896bc6SHong Zhang PetscErrorCode ierr; 13493c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13503c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13513c896bc6SHong Zhang 13523c896bc6SHong Zhang PetscFunctionBegin; 13533c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13543c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1355d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13563c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1357d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13583c896bc6SHong Zhang } else { 13593c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang } 13623c896bc6SHong Zhang PetscFunctionReturn(0); 13633c896bc6SHong Zhang } 13643c896bc6SHong Zhang 13653c896bc6SHong Zhang #undef __FUNCT__ 13664994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13674994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1368273d9f13SBarry Smith { 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370273d9f13SBarry Smith 1371273d9f13SBarry Smith PetscFunctionBegin; 1372db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1373273d9f13SBarry Smith PetscFunctionReturn(0); 1374273d9f13SBarry Smith } 1375a5e6ed63SBarry Smith 13764fe895cdSHong Zhang #undef __FUNCT__ 13774fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13784fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13794fe895cdSHong Zhang { 13804fe895cdSHong Zhang PetscErrorCode ierr; 13814fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13824fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13834fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13844fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13854fe895cdSHong Zhang 13864fe895cdSHong Zhang PetscFunctionBegin; 13874fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13884fe895cdSHong Zhang PetscScalar alpha = a; 13894fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13904fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13910805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13934fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13944fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13950805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13964fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13974fe895cdSHong Zhang } else { 1398d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13994fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1400d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14014fe895cdSHong Zhang } 14024fe895cdSHong Zhang PetscFunctionReturn(0); 14034fe895cdSHong Zhang } 14044fe895cdSHong Zhang 1405a5e6ed63SBarry Smith #undef __FUNCT__ 14066363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14076363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14086363de48SJed Brown { 14096363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14106363de48SJed Brown PetscInt rbs,cbs; 14116363de48SJed Brown PetscErrorCode ierr; 14126363de48SJed Brown 14136363de48SJed Brown PetscFunctionBegin; 14146363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14156363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14166363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14176363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1418e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1419e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14206363de48SJed Brown PetscFunctionReturn(0); 14216363de48SJed Brown } 14226363de48SJed Brown 14236363de48SJed Brown #undef __FUNCT__ 1424a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14251302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1426a5e6ed63SBarry Smith { 14276849ba73SBarry Smith PetscErrorCode ierr; 14281302d50aSBarry Smith PetscInt i; 1429ace3abfcSBarry Smith PetscBool flg; 1430a5e6ed63SBarry Smith 14316849ba73SBarry Smith PetscFunctionBegin; 1432a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1433a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1434e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1435a5e6ed63SBarry Smith } 1436a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1437a5e6ed63SBarry Smith PetscFunctionReturn(0); 1438a5e6ed63SBarry Smith } 1439a5e6ed63SBarry Smith 1440a5e6ed63SBarry Smith 1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1443a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1444a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1445a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1446a9d4b620SHong Zhang MatMult_MPISBAIJ, 144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1448431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1449431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 1452a30f8f8cSSatish Balay 0, 145397304618SKris Buschelman /*10*/ 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 145641f059aeSBarry Smith MatSOR_MPISBAIJ, 1457a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1459a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1460a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1461a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1462a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1464a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1465a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1466a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1467d519adbfSMatthew Knepley /*24*/ 0, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 14724994cf47SJed Brown /*29*/ MatSetUp_MPISBAIJ, 1473b5df2d14SHong Zhang 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1483a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1484d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1485a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14863c896bc6SHong Zhang MatCopy_MPISBAIJ, 1487d519adbfSMatthew Knepley /*44*/ 0, 1488a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497d519adbfSMatthew Knepley /*54*/ 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1502d519adbfSMatthew Knepley /*59*/ 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505357abbc8SBarry Smith 0, 150624d5174aSHong Zhang 0, 1507d519adbfSMatthew Knepley /*64*/ 0, 150824d5174aSHong Zhang 0, 150924d5174aSHong Zhang 0, 151024d5174aSHong Zhang 0, 151124d5174aSHong Zhang 0, 1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151324d5174aSHong Zhang 0, 151497304618SKris Buschelman 0, 151597304618SKris Buschelman 0, 151697304618SKris Buschelman 0, 1517d519adbfSMatthew Knepley /*74*/ 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 152197304618SKris Buschelman 0, 1522d519adbfSMatthew Knepley /*79*/ 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 15265bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1527d519adbfSMatthew Knepley /*84*/ 0, 1528865e5f61SKris Buschelman 0, 1529865e5f61SKris Buschelman 0, 1530865e5f61SKris Buschelman 0, 1531865e5f61SKris Buschelman 0, 1532d519adbfSMatthew Knepley /*89*/ 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536865e5f61SKris Buschelman 0, 1537d519adbfSMatthew Knepley /*94*/ 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 154099cafbc1SBarry Smith 0, 154199cafbc1SBarry Smith 0, 1542d519adbfSMatthew Knepley /*99*/ 0, 154399cafbc1SBarry Smith 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 154699cafbc1SBarry Smith 0, 1547d519adbfSMatthew Knepley /*104*/0, 154899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1549d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1550d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 155195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 155295936485SShri Abhyankar /*109*/0, 155395936485SShri Abhyankar 0, 155495936485SShri Abhyankar 0, 155595936485SShri Abhyankar 0, 155695936485SShri Abhyankar 0, 155795936485SShri Abhyankar /*114*/0, 155895936485SShri Abhyankar 0, 155995936485SShri Abhyankar 0, 156095936485SShri Abhyankar 0, 156195936485SShri Abhyankar 0, 156295936485SShri Abhyankar /*119*/0, 156395936485SShri Abhyankar 0, 156495936485SShri Abhyankar 0, 15655bba2384SShri Abhyankar 0 156699cafbc1SBarry Smith }; 1567a30f8f8cSSatish Balay 1568a30f8f8cSSatish Balay 1569a30f8f8cSSatish Balay EXTERN_C_BEGIN 15704a2ae208SSatish Balay #undef __FUNCT__ 15714a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 157211bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1573a30f8f8cSSatish Balay { 1574a30f8f8cSSatish Balay PetscFunctionBegin; 1575a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1576a30f8f8cSSatish Balay PetscFunctionReturn(0); 1577a30f8f8cSSatish Balay } 1578a30f8f8cSSatish Balay EXTERN_C_END 1579a30f8f8cSSatish Balay 1580273d9f13SBarry Smith EXTERN_C_BEGIN 15814a2ae208SSatish Balay #undef __FUNCT__ 1582a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 15837087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1584a23d5eceSKris Buschelman { 1585a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1586dfbe8321SBarry Smith PetscErrorCode ierr; 1587db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1588a23d5eceSKris Buschelman 1589a23d5eceSKris Buschelman PetscFunctionBegin; 1590db4efbfdSBarry Smith if (bs < 0){ 15917adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1592db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15938c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1594db4efbfdSBarry Smith bs = PetscAbs(bs); 1595db4efbfdSBarry Smith } 1596e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1597db4efbfdSBarry Smith bs = newbs; 1598a23d5eceSKris Buschelman 1599a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1600a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1601e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1602e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1603899cda47SBarry Smith 1604d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 160526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 160626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1607899cda47SBarry Smith 1608a23d5eceSKris Buschelman if (d_nnz) { 1609d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1610e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1611a23d5eceSKris Buschelman } 1612a23d5eceSKris Buschelman } 1613a23d5eceSKris Buschelman if (o_nnz) { 1614d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1615e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1616a23d5eceSKris Buschelman } 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman 1619a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1620d0f46423SBarry Smith mbs = B->rmap->n/bs; 1621d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1622c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1623a23d5eceSKris Buschelman 1624d0f46423SBarry Smith B->rmap->bs = bs; 1625a23d5eceSKris Buschelman b->bs2 = bs*bs; 1626a23d5eceSKris Buschelman b->mbs = mbs; 1627a23d5eceSKris Buschelman b->nbs = mbs; 1628a23d5eceSKris Buschelman b->Mbs = Mbs; 1629a23d5eceSKris Buschelman b->Nbs = Mbs; 1630a23d5eceSKris Buschelman 1631a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1632d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1633a23d5eceSKris Buschelman } 1634d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1635d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1636a23d5eceSKris Buschelman 1637d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1638d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1639a23d5eceSKris Buschelman 1640526dfc15SBarry Smith if (!B->preallocated) { 1641f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1642d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16439c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 164452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1645f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1646d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16474aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 164852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 164915bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1650526dfc15SBarry Smith } 1651a23d5eceSKris Buschelman 1652526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1653526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1654526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1655a23d5eceSKris Buschelman PetscFunctionReturn(0); 1656a23d5eceSKris Buschelman } 1657a23d5eceSKris Buschelman EXTERN_C_END 1658a23d5eceSKris Buschelman 16595c9eb25fSBarry Smith EXTERN_C_BEGIN 1660dfb205c3SBarry Smith #undef __FUNCT__ 1661dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1662dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1663dfb205c3SBarry Smith { 1664dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1665dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1666dfb205c3SBarry Smith const PetscInt *JJ=0; 1667dfb205c3SBarry Smith PetscScalar *values=0; 1668dfb205c3SBarry Smith PetscErrorCode ierr; 1669dfb205c3SBarry Smith 1670dfb205c3SBarry Smith PetscFunctionBegin; 1671dfb205c3SBarry Smith 1672dfb205c3SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1673dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1674dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1675dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1676dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1677dfb205c3SBarry Smith m = B->rmap->n/bs; 1678dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1679dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1680dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1681dfb205c3SBarry Smith 1682dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1683dfb205c3SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 1684dfb205c3SBarry Smith for (i=0; i<m; i++) { 1685dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1686dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1687dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1688dfb205c3SBarry Smith JJ = jj + ii[i]; 1689dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1690dfb205c3SBarry Smith if (*JJ >= cstart) break; 1691dfb205c3SBarry Smith JJ++; 1692dfb205c3SBarry Smith } 1693dfb205c3SBarry Smith d = 0; 1694dfb205c3SBarry Smith for (; j<nz; j++) { 1695dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1696dfb205c3SBarry Smith d++; 1697dfb205c3SBarry Smith } 1698dfb205c3SBarry Smith d_nnz[i] = d; 1699dfb205c3SBarry Smith o_nnz[i] = nz - d; 1700dfb205c3SBarry Smith } 1701dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1702dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1703dfb205c3SBarry Smith 1704dfb205c3SBarry Smith values = (PetscScalar*)V; 1705dfb205c3SBarry Smith if (!values) { 1706dfb205c3SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 1707dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1708dfb205c3SBarry Smith } 1709dfb205c3SBarry Smith for (i=0; i<m; i++) { 1710dfb205c3SBarry Smith PetscInt row = i + rstart; 1711dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1712dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1713dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1714dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1715dfb205c3SBarry Smith } 1716dfb205c3SBarry Smith 1717dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1718dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1719dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17207827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1721dfb205c3SBarry Smith PetscFunctionReturn(0); 1722dfb205c3SBarry Smith } 1723dfb205c3SBarry Smith EXTERN_C_END 1724dfb205c3SBarry Smith 1725dfb205c3SBarry Smith EXTERN_C_BEGIN 1726611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 17277087cfbeSBarry Smith extern PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1728611f576cSBarry Smith #endif 1729611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 17307087cfbeSBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1731611f576cSBarry Smith #endif 1732b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1733b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1734b5e56a35SBarry Smith #endif 17355c9eb25fSBarry Smith EXTERN_C_END 17365c9eb25fSBarry Smith 17370bad9183SKris Buschelman /*MC 1738fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1739828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1740828413b8SBarry Smith the matrix is stored. 1741828413b8SBarry Smith 1742828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1743828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17440bad9183SKris Buschelman 17450bad9183SKris Buschelman Options Database Keys: 17460bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17470bad9183SKris Buschelman 17480bad9183SKris Buschelman Level: beginner 17490bad9183SKris Buschelman 17500bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17510bad9183SKris Buschelman M*/ 17520bad9183SKris Buschelman 1753a23d5eceSKris Buschelman EXTERN_C_BEGIN 1754aa5a9175SDahai Guo extern PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,const MatType,MatReuse,Mat*); 1755aa5a9175SDahai Guo EXTERN_C_END 1756aa5a9175SDahai Guo 1757aa5a9175SDahai Guo EXTERN_C_BEGIN 1758a23d5eceSKris Buschelman #undef __FUNCT__ 17594a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17607087cfbeSBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1761b5df2d14SHong Zhang { 1762b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1763dfbe8321SBarry Smith PetscErrorCode ierr; 1764ace3abfcSBarry Smith PetscBool flg; 1765b5df2d14SHong Zhang 1766b5df2d14SHong Zhang PetscFunctionBegin; 1767b5df2d14SHong Zhang 176838f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1769b0a32e0cSBarry Smith B->data = (void*)b; 1770b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1773b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1774b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1775b5df2d14SHong Zhang 1776b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 17777adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17787adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1779b5df2d14SHong Zhang 1780b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1781899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang /* build cache for off array entries formed */ 17847adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1785b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1786b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1787b5df2d14SHong Zhang b->garray = PETSC_NULL; 1788b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1789b5df2d14SHong Zhang 1790b5df2d14SHong Zhang /* stuff used in block assembly */ 1791b5df2d14SHong Zhang b->barray = 0; 1792b5df2d14SHong Zhang 1793b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1794b5df2d14SHong Zhang b->lvec = 0; 1795b5df2d14SHong Zhang b->Mvctx = 0; 179640781036SHong Zhang b->slvec0 = 0; 179740781036SHong Zhang b->slvec0b = 0; 179840781036SHong Zhang b->slvec1 = 0; 179940781036SHong Zhang b->slvec1a = 0; 180040781036SHong Zhang b->slvec1b = 0; 180140781036SHong Zhang b->sMvctx = 0; 1802b5df2d14SHong Zhang 1803b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1804b5df2d14SHong Zhang b->rowindices = 0; 1805b5df2d14SHong Zhang b->rowvalues = 0; 1806b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1807b5df2d14SHong Zhang 1808b5df2d14SHong Zhang /* hash table stuff */ 1809b5df2d14SHong Zhang b->ht = 0; 1810b5df2d14SHong Zhang b->hd = 0; 1811b5df2d14SHong Zhang b->ht_size = 0; 1812b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1813b5df2d14SHong Zhang b->ht_fact = 0; 1814b5df2d14SHong Zhang b->ht_total_ct = 0; 1815b5df2d14SHong Zhang b->ht_insert_ct = 0; 1816b5df2d14SHong Zhang 18177a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18187a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18197a868f3eSHong Zhang 182059ffdab8SBarry Smith b->in_loc = 0; 182159ffdab8SBarry Smith b->v_loc = 0; 182259ffdab8SBarry Smith b->n_loc = 0; 18237adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 1824acfcf0e5SJed Brown ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1825b5df2d14SHong Zhang if (flg) { 1826f6275e2eSBarry Smith PetscReal fact = 1.39; 18274e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 18288c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1829b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1830b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 18311e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1832b5df2d14SHong Zhang } 18338c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 18348c07d4e3SBarry Smith 1835b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1836ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1837b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1838b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1839b5e56a35SBarry Smith #endif 1840611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1841ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 1842bccb9932SShri Abhyankar "MatGetFactor_sbaij_mumps", 1843bccb9932SShri Abhyankar MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1844611f576cSBarry Smith #endif 1845611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1846ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 18475c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 18485c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1849611f576cSBarry Smith #endif 1850b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1851b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1852b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1853b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1854b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1855b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1856b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1857b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1858b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1859a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1860a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1861a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1862dfb205c3SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C", 1863dfb205c3SBarry Smith "MatMPISBAIJSetPreallocationCSR_MPISBAIJ", 1864dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1865aa5a9175SDahai Guo ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C", 1866aa5a9175SDahai Guo "MatConvert_MPISBAIJ_MPISBSTRM", 1867aa5a9175SDahai Guo MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1868aa5a9175SDahai Guo 186923ce1328SBarry Smith B->symmetric = PETSC_TRUE; 187023ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 187123ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 187223ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 187317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1874b5df2d14SHong Zhang PetscFunctionReturn(0); 1875b5df2d14SHong Zhang } 1876273d9f13SBarry Smith EXTERN_C_END 1877b5df2d14SHong Zhang 1878209238afSKris Buschelman /*MC 1879002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1880209238afSKris Buschelman 1881209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1882209238afSKris Buschelman and MATMPISBAIJ otherwise. 1883209238afSKris Buschelman 1884209238afSKris Buschelman Options Database Keys: 1885209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1886209238afSKris Buschelman 1887209238afSKris Buschelman Level: beginner 1888209238afSKris Buschelman 1889209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1890209238afSKris Buschelman M*/ 1891209238afSKris Buschelman 18924a2ae208SSatish Balay #undef __FUNCT__ 18934a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1894b5df2d14SHong Zhang /*@C 1895b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1896b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1897b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1898b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang Collective on Mat 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang Input Parameters: 1903b5df2d14SHong Zhang + A - the matrix 1904b5df2d14SHong Zhang . bs - size of blockk 1905b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1906b5df2d14SHong Zhang submatrix (same for all local rows) 1907b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19086d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 190995742e49SBarry Smith (possibly different for each block row) or PETSC_NULL. If you plan to factor the matrix you must leave room 191095742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1911b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1912b5df2d14SHong Zhang submatrix (same for all local rows). 1913b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1914c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 1915c2fc9fa9SBarry Smith (possibly different for each block row) or PETSC_NULL. 1916b5df2d14SHong Zhang 1917b5df2d14SHong Zhang 1918b5df2d14SHong Zhang Options Database Keys: 1919b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1920b5df2d14SHong Zhang block calculations (much slower) 1921b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1922b5df2d14SHong Zhang 1923b5df2d14SHong Zhang Notes: 1924b5df2d14SHong Zhang 1925b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1926b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1927b5df2d14SHong Zhang 192849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 192949a6f317SBarry Smith 1930b5df2d14SHong Zhang Storage Information: 1931b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1932b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1933b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1934b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1935b5df2d14SHong Zhang 1936b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1937b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1938b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1939b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1940b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1941b5df2d14SHong Zhang 1942aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1943aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1944aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1945aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1946aa95bbe8SBarry Smith 1947b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1948b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1949b5df2d14SHong Zhang 1950b5df2d14SHong Zhang .vb 1951b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1952b5df2d14SHong Zhang ------------------- 1953c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 1954c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 1955c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 1956b5df2d14SHong Zhang ------------------- 1957b5df2d14SHong Zhang .ve 1958b5df2d14SHong Zhang 1959b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1960b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19616d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19626d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1963b5df2d14SHong Zhang 19646d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19656d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1966c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1967c2fc9fa9SBarry Smith 1968b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1969b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1970b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1971b5df2d14SHong Zhang matrices. 1972b5df2d14SHong Zhang 1973b5df2d14SHong Zhang Level: intermediate 1974b5df2d14SHong Zhang 1975b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1976b5df2d14SHong Zhang 197769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 1978b5df2d14SHong Zhang @*/ 19797087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1980b5df2d14SHong Zhang { 19814ac538c5SBarry Smith PetscErrorCode ierr; 1982b5df2d14SHong Zhang 1983b5df2d14SHong Zhang PetscFunctionBegin; 19846ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19856ba663aaSJed Brown PetscValidType(B,1); 19866ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19874ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1988b5df2d14SHong Zhang PetscFunctionReturn(0); 1989b5df2d14SHong Zhang } 1990b5df2d14SHong Zhang 19914a2ae208SSatish Balay #undef __FUNCT__ 199269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1993a30f8f8cSSatish Balay /*@C 199469b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1995a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1996a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1997a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1998a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay Collective on MPI_Comm 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Input Parameters: 2003a30f8f8cSSatish Balay + comm - MPI communicator 2004a30f8f8cSSatish Balay . bs - size of blockk 2005a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2006a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2007a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2008a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2009a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2010a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2011a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2012a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2013a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2014a30f8f8cSSatish Balay submatrix (same for all local rows) 2015a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20166d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20176d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 201895742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 201995742e49SBarry Smith set its value even if it is zero. 2020a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2021a30f8f8cSSatish Balay submatrix (same for all local rows). 2022a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2023a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 2024a30f8f8cSSatish Balay each block row) or PETSC_NULL. 2025a30f8f8cSSatish Balay 2026a30f8f8cSSatish Balay Output Parameter: 2027a30f8f8cSSatish Balay . A - the matrix 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay Options Database Keys: 2030a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2031a30f8f8cSSatish Balay block calculations (much slower) 2032a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2033a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2034a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2035a30f8f8cSSatish Balay 2036175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2037ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2038175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2039175b88e8SBarry Smith 2040a30f8f8cSSatish Balay Notes: 2041d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20426d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2043d1be2dadSMatthew Knepley 2044a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2045a30f8f8cSSatish Balay (possibly both). 2046a30f8f8cSSatish Balay 2047a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2048a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2049a30f8f8cSSatish Balay 205049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 205149a6f317SBarry Smith 2052a30f8f8cSSatish Balay Storage Information: 2053a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2054a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2055a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2056a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2059a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 2060a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2061a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2062a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2063a30f8f8cSSatish Balay 2064a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2065a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2066a30f8f8cSSatish Balay 2067a30f8f8cSSatish Balay .vb 2068a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2069a30f8f8cSSatish Balay ------------------- 2070c2fc9fa9SBarry Smith row 3 | . . . d d d o o o o o o 2071c2fc9fa9SBarry Smith row 4 | . . . d d d o o o o o o 2072c2fc9fa9SBarry Smith row 5 | . . . d d d o o o o o o 2073a30f8f8cSSatish Balay ------------------- 2074a30f8f8cSSatish Balay .ve 2075a30f8f8cSSatish Balay 2076a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2077a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20786d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20796d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2080a30f8f8cSSatish Balay 20816d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20826d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2083a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2084a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2085a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2086a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2087a30f8f8cSSatish Balay matrices. 2088a30f8f8cSSatish Balay 2089a30f8f8cSSatish Balay Level: intermediate 2090a30f8f8cSSatish Balay 2091a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2092a30f8f8cSSatish Balay 209369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2094a30f8f8cSSatish Balay @*/ 2095a30f8f8cSSatish Balay 209669b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2097a30f8f8cSSatish Balay { 20986849ba73SBarry Smith PetscErrorCode ierr; 20991302d50aSBarry Smith PetscMPIInt size; 2100a30f8f8cSSatish Balay 2101a30f8f8cSSatish Balay PetscFunctionBegin; 2102f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2103f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2104273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2105273d9f13SBarry Smith if (size > 1) { 2106b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2107b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2108273d9f13SBarry Smith } else { 2109273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2110273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2111273d9f13SBarry Smith } 2112a30f8f8cSSatish Balay PetscFunctionReturn(0); 2113a30f8f8cSSatish Balay } 2114a30f8f8cSSatish Balay 2115a30f8f8cSSatish Balay 21164a2ae208SSatish Balay #undef __FUNCT__ 21174a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2119a30f8f8cSSatish Balay { 2120a30f8f8cSSatish Balay Mat mat; 2121a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2122dfbe8321SBarry Smith PetscErrorCode ierr; 2123d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2124387bc808SHong Zhang PetscScalar *array; 2125a30f8f8cSSatish Balay 2126a30f8f8cSSatish Balay PetscFunctionBegin; 2127a30f8f8cSSatish Balay *newmat = 0; 21287adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2129d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21307adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21311d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 21321e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21331e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2134e1b6402fSHong Zhang 2135d5f3da31SBarry Smith mat->factortype = matin->factortype; 2136273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 213782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21387fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21397fff6886SHong Zhang 2140b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2141a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2142a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2143a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2144a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2145a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2146a30f8f8cSSatish Balay 2147899cda47SBarry Smith 2148a30f8f8cSSatish Balay a->size = oldmat->size; 2149a30f8f8cSSatish Balay a->rank = oldmat->rank; 2150a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2151a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2152a30f8f8cSSatish Balay a->rowindices = 0; 2153a30f8f8cSSatish Balay a->rowvalues = 0; 2154a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2155a30f8f8cSSatish Balay a->barray = 0; 2156899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2157899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2158899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2159899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2160a30f8f8cSSatish Balay 2161a30f8f8cSSatish Balay /* hash table stuff */ 2162a30f8f8cSSatish Balay a->ht = 0; 2163a30f8f8cSSatish Balay a->hd = 0; 2164a30f8f8cSSatish Balay a->ht_size = 0; 2165a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2166a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2167a30f8f8cSSatish Balay a->ht_total_ct = 0; 2168a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2169a30f8f8cSSatish Balay 2170899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2171a30f8f8cSSatish Balay if (oldmat->colmap) { 2172a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2173a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay #else 21751302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 217652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21771302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2178a30f8f8cSSatish Balay #endif 2179a30f8f8cSSatish Balay } else a->colmap = 0; 2180387bc808SHong Zhang 2181a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21821302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 218352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21841302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2185a30f8f8cSSatish Balay } else a->garray = 0; 2186a30f8f8cSSatish Balay 2187533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 218952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 219152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 219282327fa8SHong Zhang 219382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 219452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 219582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 219652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2197387bc808SHong Zhang 2198387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21991ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2200387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2201387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22021ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22031ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2204387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22051ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 220652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 220752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 220852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 220952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 221052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2211387bc808SHong Zhang 2212387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2213387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2214387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 221552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 221682327fa8SHong Zhang 2217a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 221852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 222052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 22217adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay *newmat = mat; 2223a30f8f8cSSatish Balay PetscFunctionReturn(0); 2224a30f8f8cSSatish Balay } 2225a30f8f8cSSatish Balay 22264a2ae208SSatish Balay #undef __FUNCT__ 22275bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2228112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 222995936485SShri Abhyankar { 223095936485SShri Abhyankar PetscErrorCode ierr; 223195936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 223295936485SShri Abhyankar PetscScalar *vals,*buf; 223395936485SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 223495936485SShri Abhyankar MPI_Status status; 223595936485SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 223695936485SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 223795936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 223895936485SShri Abhyankar PetscInt bs=1,Mbs,mbs,extra_rows; 223995936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 224095936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 224195936485SShri Abhyankar int fd; 224295936485SShri Abhyankar 224395936485SShri Abhyankar PetscFunctionBegin; 224495936485SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 224595936485SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 224695936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 224795936485SShri Abhyankar 224895936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 224995936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 225095936485SShri Abhyankar if (!rank) { 225195936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 225295936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 225395936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 225495936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 225595936485SShri Abhyankar } 225695936485SShri Abhyankar 225795936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 225895936485SShri Abhyankar 225995936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 226095936485SShri Abhyankar M = header[1]; N = header[2]; 226195936485SShri Abhyankar 226295936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 226395936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 226495936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 226595936485SShri Abhyankar 226695936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 226795936485SShri Abhyankar if (sizesset) { 226895936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 226995936485SShri Abhyankar } 2270abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2271abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 227295936485SShri Abhyankar 227395936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 227495936485SShri Abhyankar 227595936485SShri Abhyankar /* 227695936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 227795936485SShri Abhyankar divisible by the blocksize 227895936485SShri Abhyankar */ 227995936485SShri Abhyankar Mbs = M/bs; 228095936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 228195936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 228295936485SShri Abhyankar else Mbs++; 228395936485SShri Abhyankar if (extra_rows &&!rank) { 228495936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 228595936485SShri Abhyankar } 228695936485SShri Abhyankar 228795936485SShri Abhyankar /* determine ownership of all rows */ 228895936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 228995936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 229095936485SShri Abhyankar m = mbs*bs; 229195936485SShri Abhyankar } else { /* User Set */ 229295936485SShri Abhyankar m = newmat->rmap->n; 229395936485SShri Abhyankar mbs = m/bs; 229495936485SShri Abhyankar } 229595936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 229695936485SShri Abhyankar mmbs = PetscMPIIntCast(mbs); 229795936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 229895936485SShri Abhyankar rowners[0] = 0; 229995936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 230095936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 230195936485SShri Abhyankar rstart = rowners[rank]; 230295936485SShri Abhyankar rend = rowners[rank+1]; 230395936485SShri Abhyankar 230495936485SShri Abhyankar /* distribute row lengths to all processors */ 230595936485SShri Abhyankar ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 230695936485SShri Abhyankar if (!rank) { 230795936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 230895936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 230995936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 231095936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 231195936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 231295936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 231395936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 231495936485SShri Abhyankar } else { 231595936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 231695936485SShri Abhyankar } 231795936485SShri Abhyankar 231895936485SShri Abhyankar if (!rank) { /* procs[0] */ 231995936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 232095936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 232195936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 232295936485SShri Abhyankar for (i=0; i<size; i++) { 232395936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 232495936485SShri Abhyankar procsnz[i] += rowlengths[j]; 232595936485SShri Abhyankar } 232695936485SShri Abhyankar } 232795936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 232895936485SShri Abhyankar 232995936485SShri Abhyankar /* determine max buffer needed and allocate it */ 233095936485SShri Abhyankar maxnz = 0; 233195936485SShri Abhyankar for (i=0; i<size; i++) { 233295936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 233395936485SShri Abhyankar } 233495936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 233595936485SShri Abhyankar 233695936485SShri Abhyankar /* read in my part of the matrix column indices */ 233795936485SShri Abhyankar nz = procsnz[0]; 233895936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 233995936485SShri Abhyankar mycols = ibuf; 234095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 234195936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 234295936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 234395936485SShri Abhyankar 234495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 234595936485SShri Abhyankar for (i=1; i<size-1; i++) { 234695936485SShri Abhyankar nz = procsnz[i]; 234795936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 234895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 234995936485SShri Abhyankar } 235095936485SShri Abhyankar /* read in the stuff for the last proc */ 235195936485SShri Abhyankar if (size != 1) { 235295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 235395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 235495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 235595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 235695936485SShri Abhyankar } 235795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 235895936485SShri Abhyankar } else { /* procs[i], i>0 */ 235995936485SShri Abhyankar /* determine buffer space needed for message */ 236095936485SShri Abhyankar nz = 0; 236195936485SShri Abhyankar for (i=0; i<m; i++) { 236295936485SShri Abhyankar nz += locrowlens[i]; 236395936485SShri Abhyankar } 236495936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 236595936485SShri Abhyankar mycols = ibuf; 236695936485SShri Abhyankar /* receive message of column indices*/ 236795936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 236895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 236995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 237095936485SShri Abhyankar } 237195936485SShri Abhyankar 237295936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 237395936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 237495936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 237595936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 237695936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 237795936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 237895936485SShri Abhyankar rowcount = 0; 237995936485SShri Abhyankar nzcount = 0; 238095936485SShri Abhyankar for (i=0; i<mbs; i++) { 238195936485SShri Abhyankar dcount = 0; 238295936485SShri Abhyankar odcount = 0; 238395936485SShri Abhyankar for (j=0; j<bs; j++) { 238495936485SShri Abhyankar kmax = locrowlens[rowcount]; 238595936485SShri Abhyankar for (k=0; k<kmax; k++) { 238695936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 238795936485SShri Abhyankar if (!mask[tmp]) { 238895936485SShri Abhyankar mask[tmp] = 1; 238995936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 239095936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 239195936485SShri Abhyankar } 239295936485SShri Abhyankar } 239395936485SShri Abhyankar rowcount++; 239495936485SShri Abhyankar } 239595936485SShri Abhyankar 239695936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 239795936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 239895936485SShri Abhyankar 239995936485SShri Abhyankar /* zero out the mask elements we set */ 240095936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 240195936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 240295936485SShri Abhyankar } 240395936485SShri Abhyankar if (!sizesset) { 240495936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 240595936485SShri Abhyankar } 240695936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2407*6816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 240895936485SShri Abhyankar 240995936485SShri Abhyankar if (!rank) { 241095936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 241195936485SShri Abhyankar /* read in my part of the matrix numerical values */ 241295936485SShri Abhyankar nz = procsnz[0]; 241395936485SShri Abhyankar vals = buf; 241495936485SShri Abhyankar mycols = ibuf; 241595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 241695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 241795936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 241895936485SShri Abhyankar 241995936485SShri Abhyankar /* insert into matrix */ 242095936485SShri Abhyankar jj = rstart*bs; 242195936485SShri Abhyankar for (i=0; i<m; i++) { 242295936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 242395936485SShri Abhyankar mycols += locrowlens[i]; 242495936485SShri Abhyankar vals += locrowlens[i]; 242595936485SShri Abhyankar jj++; 242695936485SShri Abhyankar } 242795936485SShri Abhyankar 242895936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 242995936485SShri Abhyankar for (i=1; i<size-1; i++) { 243095936485SShri Abhyankar nz = procsnz[i]; 243195936485SShri Abhyankar vals = buf; 243295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 243395936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 243495936485SShri Abhyankar } 243595936485SShri Abhyankar /* the last proc */ 243695936485SShri Abhyankar if (size != 1){ 243795936485SShri Abhyankar nz = procsnz[i] - extra_rows; 243895936485SShri Abhyankar vals = buf; 243995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 244095936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 244195936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 244295936485SShri Abhyankar } 244395936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 244495936485SShri Abhyankar 244595936485SShri Abhyankar } else { 244695936485SShri Abhyankar /* receive numeric values */ 244795936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 244895936485SShri Abhyankar 244995936485SShri Abhyankar /* receive message of values*/ 245095936485SShri Abhyankar vals = buf; 245195936485SShri Abhyankar mycols = ibuf; 245295936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 245395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 245495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 245595936485SShri Abhyankar 245695936485SShri Abhyankar /* insert into matrix */ 245795936485SShri Abhyankar jj = rstart*bs; 245895936485SShri Abhyankar for (i=0; i<m; i++) { 245995936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 246095936485SShri Abhyankar mycols += locrowlens[i]; 246195936485SShri Abhyankar vals += locrowlens[i]; 246295936485SShri Abhyankar jj++; 246395936485SShri Abhyankar } 246495936485SShri Abhyankar } 246595936485SShri Abhyankar 246695936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 246795936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 246895936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 246995936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 247095936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 247195936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 247295936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247395936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 247495936485SShri Abhyankar PetscFunctionReturn(0); 247595936485SShri Abhyankar } 247695936485SShri Abhyankar 247795936485SShri Abhyankar #undef __FUNCT__ 24784a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2479dcf5cc72SBarry Smith /*XXXXX@ 2480a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2481a30f8f8cSSatish Balay 2482a30f8f8cSSatish Balay Input Parameters: 2483a30f8f8cSSatish Balay . mat - the matrix 2484a30f8f8cSSatish Balay . fact - factor 2485a30f8f8cSSatish Balay 2486c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2487a30f8f8cSSatish Balay 2488a30f8f8cSSatish Balay Level: advanced 2489a30f8f8cSSatish Balay 2490a30f8f8cSSatish Balay Notes: 2491a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2492a30f8f8cSSatish Balay 2493a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2494a30f8f8cSSatish Balay 2495a30f8f8cSSatish Balay .seealso: MatSetOption() 2496dcf5cc72SBarry Smith @XXXXX*/ 2497dcf5cc72SBarry Smith 249824d5174aSHong Zhang 24994a2ae208SSatish Balay #undef __FUNCT__ 2500985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2501985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 250224d5174aSHong Zhang { 250324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2504f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2505ca54ac64SHong Zhang PetscReal atmp; 250687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2507dfbe8321SBarry Smith PetscErrorCode ierr; 25081302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25091302d50aSBarry Smith PetscMPIInt rank,size; 25101302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 251187828ca2SBarry Smith PetscScalar *va; 25128a1c53f2SBarry Smith MatScalar *ba; 2513f4c0e9e4SHong Zhang MPI_Status stat; 251424d5174aSHong Zhang 251524d5174aSHong Zhang PetscFunctionBegin; 2516e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2517985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 25181ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2519f4c0e9e4SHong Zhang 25207adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 25217adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2522f4c0e9e4SHong Zhang 2523d0f46423SBarry Smith bs = A->rmap->bs; 2524f4c0e9e4SHong Zhang mbs = a->mbs; 2525f4c0e9e4SHong Zhang Mbs = a->Mbs; 2526f4c0e9e4SHong Zhang ba = b->a; 2527f4c0e9e4SHong Zhang bi = b->i; 2528f4c0e9e4SHong Zhang bj = b->j; 2529f4c0e9e4SHong Zhang 2530f4c0e9e4SHong Zhang /* find ownerships */ 2531d0f46423SBarry Smith rowners_bs = A->rmap->range; 2532f4c0e9e4SHong Zhang 2533f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 253482502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2535ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2536f4c0e9e4SHong Zhang 2537f4c0e9e4SHong Zhang /* row_max for B */ 2538b8475685SHong Zhang if (rank != size-1){ 2539f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2540f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2541f4c0e9e4SHong Zhang brow = bs*i; 2542f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2543f4c0e9e4SHong Zhang bcol = bs*(*bj); 2544f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2545ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 254604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2547f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2548f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2549ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2550ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2551f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2552f4c0e9e4SHong Zhang } 2553f4c0e9e4SHong Zhang } 2554f4c0e9e4SHong Zhang bj++; 2555f4c0e9e4SHong Zhang } 2556f4c0e9e4SHong Zhang } 2557f4c0e9e4SHong Zhang 2558f4c0e9e4SHong Zhang /* send values to its owners */ 2559f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2560f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2561ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 25627adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2563ca54ac64SHong Zhang } 2564f4c0e9e4SHong Zhang } 2565f4c0e9e4SHong Zhang 2566f4c0e9e4SHong Zhang /* receive values */ 2567ca54ac64SHong Zhang if (rank){ 2568f4c0e9e4SHong Zhang rvalues = work; 2569ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2570f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 25717adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2572f4c0e9e4SHong Zhang /* process values */ 2573f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2574ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2575f4c0e9e4SHong Zhang } 2576f4c0e9e4SHong Zhang } 2577ca54ac64SHong Zhang } 2578f4c0e9e4SHong Zhang 25791ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2580ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 258124d5174aSHong Zhang PetscFunctionReturn(0); 258224d5174aSHong Zhang } 25832798e883SHong Zhang 25842798e883SHong Zhang #undef __FUNCT__ 258541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 258641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25872798e883SHong Zhang { 25882798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2589dfbe8321SBarry Smith PetscErrorCode ierr; 2590d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25913649974fSBarry Smith PetscScalar *x,*ptr,*from; 2592ffe4fb16SHong Zhang Vec bb1; 25933649974fSBarry Smith const PetscScalar *b; 2594ffe4fb16SHong Zhang 2595ffe4fb16SHong Zhang PetscFunctionBegin; 2596e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2597e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2598ffe4fb16SHong Zhang 2599a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 260041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2601a2b30743SBarry Smith PetscFunctionReturn(0); 2602a2b30743SBarry Smith } 2603a2b30743SBarry Smith 2604ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2605ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 260641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2607ffe4fb16SHong Zhang its--; 2608ffe4fb16SHong Zhang } 2609ffe4fb16SHong Zhang 2610ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2611ffe4fb16SHong Zhang while (its--){ 2612ffe4fb16SHong Zhang 2613ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2614ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2615ffe4fb16SHong Zhang 2616ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26171ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26181ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2619ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26201ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2621ffe4fb16SHong Zhang 2622efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2623ffe4fb16SHong Zhang 2624ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26251ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26263649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2627ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26281ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2629ffe4fb16SHong Zhang 2630ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2631fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2632ffe4fb16SHong Zhang 2633ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26341ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2635a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2636ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2637ffe4fb16SHong Zhang 2638ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2639ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2640ffe4fb16SHong Zhang 2641ffe4fb16SHong Zhang /* local diagonal sweep */ 264241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2643ffe4fb16SHong Zhang } 26446bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2645fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 264641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2647fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 264841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2649fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2650fa22f6d0SBarry Smith Vec xx1; 2651ace3abfcSBarry Smith PetscBool hasop; 265220f1ed55SBarry Smith const PetscScalar *diag; 2653887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 265420f1ed55SBarry Smith PetscInt i,n; 2655fa22f6d0SBarry Smith 2656fa22f6d0SBarry Smith if (!mat->xx1) { 2657fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2658fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2659fa22f6d0SBarry Smith } 2660fa22f6d0SBarry Smith xx1 = mat->xx1; 2661fa22f6d0SBarry Smith bb1 = mat->bb1; 2662fa22f6d0SBarry Smith 266341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2664fa22f6d0SBarry Smith 2665fa22f6d0SBarry Smith if (!mat->diag) { 2666effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2667fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2668fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2669fa22f6d0SBarry Smith } 2670fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2671fa22f6d0SBarry Smith 2672fa22f6d0SBarry Smith if (hasop) { 2673fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2674887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 267520f1ed55SBarry Smith } else { 267620f1ed55SBarry Smith /* 267720f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 267820f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2679887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 268020f1ed55SBarry Smith */ 268120f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26823649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26833649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 268420f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 268520f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2686887ee2caSBarry Smith if (omega == 1.0) { 268720f1ed55SBarry Smith for (i=0; i<n; i++) { 268820f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 268920f1ed55SBarry Smith } 269020f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2691887ee2caSBarry Smith } else { 2692887ee2caSBarry Smith for (i=0; i<n; i++) { 2693887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2694887ee2caSBarry Smith } 2695887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2696887ee2caSBarry Smith } 269720f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26983649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26993649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 270020f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 270120f1ed55SBarry Smith } 2702fa22f6d0SBarry Smith 2703fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2704fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2705fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2706fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2707fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2708fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2709fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2710fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2711fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2712fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2713effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2714fa22f6d0SBarry Smith 2715fa22f6d0SBarry Smith /* local sweep */ 271641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2717fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2718ffe4fb16SHong Zhang } else { 2719e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2720ffe4fb16SHong Zhang } 2721ffe4fb16SHong Zhang PetscFunctionReturn(0); 2722ffe4fb16SHong Zhang } 2723ffe4fb16SHong Zhang 2724ffe4fb16SHong Zhang #undef __FUNCT__ 272541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 272641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2727ffe4fb16SHong Zhang { 2728ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2729dfbe8321SBarry Smith PetscErrorCode ierr; 27302798e883SHong Zhang Vec lvec1,bb1; 27312798e883SHong Zhang 27322798e883SHong Zhang PetscFunctionBegin; 2733e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2734e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27352798e883SHong Zhang 2736c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 27372798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 273841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27392798e883SHong Zhang its--; 27402798e883SHong Zhang } 27412798e883SHong Zhang 27422798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27432798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27442798e883SHong Zhang while (its--){ 2745ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27462798e883SHong Zhang 27472798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27482798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2749efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27502798e883SHong Zhang 2751ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27522798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2753ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27542798e883SHong Zhang 27552798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2756efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27572798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27582798e883SHong Zhang 2759ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27602798e883SHong Zhang 2761c14dc6b6SHong Zhang /* diagonal sweep */ 276241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27632798e883SHong Zhang } 27646bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27656bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27666bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27672798e883SHong Zhang PetscFunctionReturn(0); 27682798e883SHong Zhang } 27692798e883SHong Zhang 2770dfb205c3SBarry Smith #undef __FUNCT__ 2771dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2772dfb205c3SBarry Smith /*@ 2773dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2774dfb205c3SBarry Smith CSR format the local rows. 2775dfb205c3SBarry Smith 2776dfb205c3SBarry Smith Collective on MPI_Comm 2777dfb205c3SBarry Smith 2778dfb205c3SBarry Smith Input Parameters: 2779dfb205c3SBarry Smith + comm - MPI communicator 2780dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2781dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2782dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2783dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2784dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2785dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2786dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2787dfb205c3SBarry Smith . i - row indices 2788dfb205c3SBarry Smith . j - column indices 2789dfb205c3SBarry Smith - a - matrix values 2790dfb205c3SBarry Smith 2791dfb205c3SBarry Smith Output Parameter: 2792dfb205c3SBarry Smith . mat - the matrix 2793dfb205c3SBarry Smith 2794dfb205c3SBarry Smith Level: intermediate 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith Notes: 2797dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2798dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2799dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2800dfb205c3SBarry Smith 2801dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2802dfb205c3SBarry Smith 2803dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2804dfb205c3SBarry Smith 2805dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 280669b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2807dfb205c3SBarry Smith @*/ 28087087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2809dfb205c3SBarry Smith { 2810dfb205c3SBarry Smith PetscErrorCode ierr; 2811dfb205c3SBarry Smith 2812dfb205c3SBarry Smith 2813dfb205c3SBarry Smith PetscFunctionBegin; 2814dfb205c3SBarry Smith if (i[0]) { 2815dfb205c3SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2816dfb205c3SBarry Smith } 2817dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2818dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2819dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2820dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2821dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2822dfb205c3SBarry Smith PetscFunctionReturn(0); 2823dfb205c3SBarry Smith } 2824dfb205c3SBarry Smith 2825dfb205c3SBarry Smith 2826dfb205c3SBarry Smith #undef __FUNCT__ 2827dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2828dfb205c3SBarry Smith /*@C 2829dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2830dfb205c3SBarry Smith (the default parallel PETSc format). 2831dfb205c3SBarry Smith 2832dfb205c3SBarry Smith Collective on MPI_Comm 2833dfb205c3SBarry Smith 2834dfb205c3SBarry Smith Input Parameters: 2835dfb205c3SBarry Smith + A - the matrix 2836dfb205c3SBarry Smith . bs - the block size 2837dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2838dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2839dfb205c3SBarry Smith - v - optional values in the matrix 2840dfb205c3SBarry Smith 2841dfb205c3SBarry Smith Level: developer 2842dfb205c3SBarry Smith 2843dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2844dfb205c3SBarry Smith 284569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2846dfb205c3SBarry Smith @*/ 28477087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2848dfb205c3SBarry Smith { 28494ac538c5SBarry Smith PetscErrorCode ierr; 2850dfb205c3SBarry Smith 2851dfb205c3SBarry Smith PetscFunctionBegin; 28524ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2853dfb205c3SBarry Smith PetscFunctionReturn(0); 2854dfb205c3SBarry Smith } 2855dfb205c3SBarry Smith 2856dfb205c3SBarry Smith 2857