xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 6849ba73f22fecb8f92ef896a42e4e8bd4cd6965)
1a30f8f8cSSatish Balay 
2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
3a30f8f8cSSatish Balay #include "mpisbaij.h"
4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
5a30f8f8cSSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,int,IS[],int);
10dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []);
11dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int[],PetscScalar []);
12dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode);
13dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode);
14dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode);
15dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
16dfbe8321SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
31dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
32dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
33dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
34dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
35dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101a45adfd6SMatthew Knepley       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \
102a30f8f8cSSatish Balay       if (nrow >= rmax) { \
103a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
104a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
105a30f8f8cSSatish Balay         MatScalar *new_a; \
106a30f8f8cSSatish Balay  \
107a45adfd6SMatthew Knepley         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \
108a30f8f8cSSatish Balay  \
109a30f8f8cSSatish Balay         /* malloc new storage space */ \
110a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
11182502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
112a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
113a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
114a30f8f8cSSatish Balay  \
115a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
116a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
117a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
118a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
120a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
121a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12287828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
124a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
125a30f8f8cSSatish Balay         /* free up old matrix storage */ \
126a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
127a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
128a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
129a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
130a30f8f8cSSatish Balay         } \
131a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
132a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
133a30f8f8cSSatish Balay  \
134a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
135a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
136b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
1376c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE; \
138a30f8f8cSSatish Balay         a->reallocs++; \
1396c6c5352SBarry Smith         a->nz++; \
140a30f8f8cSSatish Balay       } \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       a_noinsert:; \
151a30f8f8cSSatish Balay     ailen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
154a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
155a30f8f8cSSatish Balay { \
156a30f8f8cSSatish Balay     brow = row/bs;  \
157a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
158a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
159a30f8f8cSSatish Balay       bcol = col/bs; \
160a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
161a30f8f8cSSatish Balay       low = 0; high = nrow; \
162a30f8f8cSSatish Balay       while (high-low > 3) { \
163a30f8f8cSSatish Balay         t = (low+high)/2; \
164a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
165a30f8f8cSSatish Balay         else              low  = t; \
166a30f8f8cSSatish Balay       } \
167a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
168a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
169a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
170a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
171a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
172a30f8f8cSSatish Balay           else                    *bap  = value;  \
173a30f8f8cSSatish Balay           goto b_noinsert; \
174a30f8f8cSSatish Balay         } \
175a30f8f8cSSatish Balay       } \
176a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
177a45adfd6SMatthew Knepley       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \
178a30f8f8cSSatish Balay       if (nrow >= rmax) { \
179a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
180a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
181a30f8f8cSSatish Balay         MatScalar *new_a; \
182a30f8f8cSSatish Balay  \
183a45adfd6SMatthew Knepley         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \
184a30f8f8cSSatish Balay  \
185a30f8f8cSSatish Balay         /* malloc new storage space */ \
186a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
18782502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
188a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
189a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
190a30f8f8cSSatish Balay  \
191a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
192a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
193a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
194a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
195a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
196a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
197a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
198a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
199a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
200a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
201a30f8f8cSSatish Balay         /* free up old matrix storage */ \
202a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
203a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
204a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
205a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
206a30f8f8cSSatish Balay         } \
207a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
208a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
209a30f8f8cSSatish Balay  \
210a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
211a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
212b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
213a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
214a30f8f8cSSatish Balay         b->reallocs++; \
215a30f8f8cSSatish Balay         b->nz++; \
216a30f8f8cSSatish Balay       } \
217a30f8f8cSSatish Balay       N = nrow++ - 1;  \
218a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
219a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
220a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
221a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
222a30f8f8cSSatish Balay       } \
223a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
224a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
225a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
226a30f8f8cSSatish Balay       b_noinsert:; \
227a30f8f8cSSatish Balay     bilen[brow] = nrow; \
228a30f8f8cSSatish Balay }
229a30f8f8cSSatish Balay #endif
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2324a2ae208SSatish Balay #undef __FUNCT__
2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
234dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
235a30f8f8cSSatish Balay {
236a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
237dfbe8321SBarry Smith   PetscErrorCode ierr;
238dfbe8321SBarry Smith   int i,N = m*n;
239a30f8f8cSSatish Balay   MatScalar    *vsingle;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   PetscFunctionBegin;
242a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
243a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
24482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
245a30f8f8cSSatish Balay     b->setvalueslen  = N;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
248a30f8f8cSSatish Balay 
249a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
250a30f8f8cSSatish Balay     vsingle[i] = v[i];
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
254a30f8f8cSSatish Balay }
255a30f8f8cSSatish Balay 
2564a2ae208SSatish Balay #undef __FUNCT__
2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
258dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
259a30f8f8cSSatish Balay {
260a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
261dfbe8321SBarry Smith   PetscErrorCode ierr;
262dfbe8321SBarry Smith   int i,N = m*n*b->bs2;
263a30f8f8cSSatish Balay   MatScalar   *vsingle;
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   PetscFunctionBegin;
266a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
267a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
26882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
269a30f8f8cSSatish Balay     b->setvalueslen  = N;
270a30f8f8cSSatish Balay   }
271a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
272a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
273a30f8f8cSSatish Balay     vsingle[i] = v[i];
274a30f8f8cSSatish Balay   }
275a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
277a30f8f8cSSatish Balay }
278a30f8f8cSSatish Balay 
2794a2ae208SSatish Balay #undef __FUNCT__
2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
281dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
282a30f8f8cSSatish Balay {
283a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
284dfbe8321SBarry Smith   PetscErrorCode ierr;
285dfbe8321SBarry Smith   int i,N = m*n;
286a30f8f8cSSatish Balay   MatScalar   *vsingle;
287a30f8f8cSSatish Balay 
288a30f8f8cSSatish Balay   PetscFunctionBegin;
28929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
2904d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
291a30f8f8cSSatish Balay }
292a30f8f8cSSatish Balay 
2934a2ae208SSatish Balay #undef __FUNCT__
2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
295dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
296a30f8f8cSSatish Balay {
297a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
298dfbe8321SBarry Smith   PetscErrorCode ierr;
299dfbe8321SBarry Smith   int i,N = m*n*b->bs2;
300a30f8f8cSSatish Balay   MatScalar   *vsingle;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   PetscFunctionBegin;
30329bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3044d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
305a30f8f8cSSatish Balay }
306a30f8f8cSSatish Balay #endif
307a30f8f8cSSatish Balay 
308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
309a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
310a30f8f8cSSatish Balay */
3114a2ae208SSatish Balay #undef __FUNCT__
312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
313dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
314a30f8f8cSSatish Balay {
315a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
316a30f8f8cSSatish Balay   MatScalar    value;
317b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
318dfbe8321SBarry Smith   PetscErrorCode ierr;
319dfbe8321SBarry Smith   int i,j,row,col;
320b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
321a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
322a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
323a30f8f8cSSatish Balay 
324a30f8f8cSSatish Balay   /* Some Variables required in the macro */
325a30f8f8cSSatish Balay   Mat          A = baij->A;
326a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
327a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
328a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
329a30f8f8cSSatish Balay 
330a30f8f8cSSatish Balay   Mat          B = baij->B;
331a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
332a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
333a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
334a30f8f8cSSatish Balay 
335a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
336a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
337a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
338a30f8f8cSSatish Balay 
339a30f8f8cSSatish Balay   /* for stash */
340f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
341f65c83cfSHong Zhang   MatScalar    *v_loc=0;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   PetscFunctionBegin;
344a30f8f8cSSatish Balay 
345a30f8f8cSSatish Balay   if(!baij->donotstash){
34682502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
34782502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
348a30f8f8cSSatish Balay   }
349a30f8f8cSSatish Balay 
350a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
351a30f8f8cSSatish Balay     if (im[i] < 0) continue;
352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
353590ac198SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1);
354a30f8f8cSSatish Balay #endif
355a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
356a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
357a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
358f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
359a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
360a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
361a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
362a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
363a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
364a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
365a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
366a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
368590ac198SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);}
369a30f8f8cSSatish Balay #endif
370a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
371a30f8f8cSSatish Balay           if (mat->was_assembled) {
372a30f8f8cSSatish Balay             if (!baij->colmap) {
373653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
374a30f8f8cSSatish Balay             }
375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
376a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
37771730473SSatish Balay             col  = col - 1;
378a30f8f8cSSatish Balay #else
37971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
380a30f8f8cSSatish Balay #endif
381a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
382a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
383a30f8f8cSSatish Balay               col =  in[j];
384a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
385a30f8f8cSSatish Balay               B = baij->B;
386a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
387a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
388a30f8f8cSSatish Balay               ba=b->a;
38971730473SSatish Balay             } else col += in[j]%bs;
390a30f8f8cSSatish Balay           } else col = in[j];
391a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
392a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
393a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
394a30f8f8cSSatish Balay         }
395a30f8f8cSSatish Balay       }
396a30f8f8cSSatish Balay     } else {  /* off processor entry */
397a30f8f8cSSatish Balay       if (!baij->donotstash) {
398a30f8f8cSSatish Balay         n_loc = 0;
399a30f8f8cSSatish Balay         for (j=0; j<n; j++){
400f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
401a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
402a30f8f8cSSatish Balay           if (roworiented) {
403a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
404a30f8f8cSSatish Balay           } else {
405a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
406a30f8f8cSSatish Balay           }
407a30f8f8cSSatish Balay           n_loc++;
408a30f8f8cSSatish Balay         }
409a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
410a30f8f8cSSatish Balay       }
411a30f8f8cSSatish Balay     }
412a30f8f8cSSatish Balay   }
413a30f8f8cSSatish Balay 
414a30f8f8cSSatish Balay   if(!baij->donotstash){
415a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
416a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
417a30f8f8cSSatish Balay   }
418a30f8f8cSSatish Balay   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
423dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
424a30f8f8cSSatish Balay {
4250880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
426f15d580aSBarry Smith   const MatScalar *value;
427f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4280880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
429dfbe8321SBarry Smith   PetscErrorCode ierr;
430dfbe8321SBarry Smith   int i,j,ii,jj,row,col,rstart=baij->rstart;
4310880e062SHong Zhang   int             rend=baij->rend,cstart=baij->cstart,stepval;
4320880e062SHong Zhang   int             cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
4330880e062SHong Zhang 
434a30f8f8cSSatish Balay   PetscFunctionBegin;
4350880e062SHong Zhang   if(!barray) {
4360880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4370880e062SHong Zhang     baij->barray = barray;
4380880e062SHong Zhang   }
4390880e062SHong Zhang 
4400880e062SHong Zhang   if (roworiented) {
4410880e062SHong Zhang     stepval = (n-1)*bs;
4420880e062SHong Zhang   } else {
4430880e062SHong Zhang     stepval = (m-1)*bs;
4440880e062SHong Zhang   }
4450880e062SHong Zhang   for (i=0; i<m; i++) {
4460880e062SHong Zhang     if (im[i] < 0) continue;
4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
448590ac198SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1);
4490880e062SHong Zhang #endif
4500880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4510880e062SHong Zhang       row = im[i] - rstart;
4520880e062SHong Zhang       for (j=0; j<n; j++) {
4530880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4540880e062SHong Zhang         if ((roworiented) && (n == 1)) {
455f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4560880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
457f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4580880e062SHong Zhang         } else { /* Here a copy is required */
4590880e062SHong Zhang           if (roworiented) {
4600880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4610880e062SHong Zhang           } else {
4620880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4630880e062SHong Zhang           }
4640880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4650880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4660880e062SHong Zhang               *barray++  = *value++;
4670880e062SHong Zhang             }
4680880e062SHong Zhang           }
4690880e062SHong Zhang           barray -=bs2;
4700880e062SHong Zhang         }
4710880e062SHong Zhang 
4720880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4730880e062SHong Zhang           col  = in[j] - cstart;
4740880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4750880e062SHong Zhang         }
4760880e062SHong Zhang         else if (in[j] < 0) continue;
4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
478590ac198SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);}
4790880e062SHong Zhang #endif
4800880e062SHong Zhang         else {
4810880e062SHong Zhang           if (mat->was_assembled) {
4820880e062SHong Zhang             if (!baij->colmap) {
483653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4840880e062SHong Zhang             }
4850880e062SHong Zhang 
4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4880880e062SHong Zhang             { int data;
4890880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4900880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4910880e062SHong Zhang             }
4920880e062SHong Zhang #else
4930880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4940880e062SHong Zhang #endif
4950880e062SHong Zhang #endif
4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4970880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4980880e062SHong Zhang             col  = (col - 1)/bs;
4990880e062SHong Zhang #else
5000880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5010880e062SHong Zhang #endif
5020880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5030880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5040880e062SHong Zhang               col =  in[j];
5050880e062SHong Zhang             }
5060880e062SHong Zhang           }
5070880e062SHong Zhang           else col = in[j];
508e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5090880e062SHong Zhang         }
5100880e062SHong Zhang       }
5110880e062SHong Zhang     } else {
5120880e062SHong Zhang       if (!baij->donotstash) {
5130880e062SHong Zhang         if (roworiented) {
5140880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5150880e062SHong Zhang         } else {
5160880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5170880e062SHong Zhang         }
5180880e062SHong Zhang       }
5190880e062SHong Zhang     }
5200880e062SHong Zhang   }
5210880e062SHong Zhang   PetscFunctionReturn(0);
522a30f8f8cSSatish Balay }
523a30f8f8cSSatish Balay 
524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
525a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
526a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
527a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5284a2ae208SSatish Balay #undef __FUNCT__
5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
530dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
531a30f8f8cSSatish Balay {
532a30f8f8cSSatish Balay   PetscFunctionBegin;
53329bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
53496e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
535a30f8f8cSSatish Balay }
536a30f8f8cSSatish Balay 
5374a2ae208SSatish Balay #undef __FUNCT__
5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
539dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
540a30f8f8cSSatish Balay {
541a30f8f8cSSatish Balay   PetscFunctionBegin;
54229bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54396e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
548dfbe8321SBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
551*6849ba73SBarry Smith   PetscErrorCode ierr;
552*6849ba73SBarry Smith   int          bs=baij->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
553a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557590ac198SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]);
558590ac198SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562590ac198SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]);
563590ac198SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
565a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data --;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584a30f8f8cSSatish Balay     } else {
58529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay  PetscFunctionReturn(0);
589a30f8f8cSSatish Balay }
590a30f8f8cSSatish Balay 
5914a2ae208SSatish Balay #undef __FUNCT__
5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
594a30f8f8cSSatish Balay {
595a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
596bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
597bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
598dfbe8321SBarry Smith   PetscErrorCode ierr;
599a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
600a30f8f8cSSatish Balay 
601a30f8f8cSSatish Balay   PetscFunctionBegin;
602a30f8f8cSSatish Balay   if (baij->size == 1) {
603a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
604a30f8f8cSSatish Balay   } else {
605a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
606f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
607a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
608a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
609a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
610a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
611a30f8f8cSSatish Balay       /*
61256faa61eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
61356faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
614a30f8f8cSSatish Balay       */
615d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
616a30f8f8cSSatish Balay       /*
61756faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
61856faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm); */
619a30f8f8cSSatish Balay 
620a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
621a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
622a30f8f8cSSatish Balay     } else {
62329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
624a30f8f8cSSatish Balay     }
625a30f8f8cSSatish Balay   }
626a30f8f8cSSatish Balay   PetscFunctionReturn(0);
627a30f8f8cSSatish Balay }
628a30f8f8cSSatish Balay 
629a30f8f8cSSatish Balay /*
630a30f8f8cSSatish Balay   Creates the hash table, and sets the table
631a30f8f8cSSatish Balay   This table is created only once.
632a30f8f8cSSatish Balay   If new entried need to be added to the matrix
633a30f8f8cSSatish Balay   then the hash table has to be destroyed and
634a30f8f8cSSatish Balay   recreated.
635a30f8f8cSSatish Balay */
6364a2ae208SSatish Balay #undef __FUNCT__
6374a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
638dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
639a30f8f8cSSatish Balay {
640a30f8f8cSSatish Balay   PetscFunctionBegin;
64129bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
64296e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
643a30f8f8cSSatish Balay }
644a30f8f8cSSatish Balay 
6454a2ae208SSatish Balay #undef __FUNCT__
6464a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
647dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
648a30f8f8cSSatish Balay {
649a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
650dfbe8321SBarry Smith   PetscErrorCode ierr;
651dfbe8321SBarry Smith   int nstash,reallocs;
652a30f8f8cSSatish Balay   InsertMode  addv;
653a30f8f8cSSatish Balay 
654a30f8f8cSSatish Balay   PetscFunctionBegin;
655a30f8f8cSSatish Balay   if (baij->donotstash) {
656a30f8f8cSSatish Balay     PetscFunctionReturn(0);
657a30f8f8cSSatish Balay   }
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
660a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
661a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
66229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
663a30f8f8cSSatish Balay   }
664a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
665a30f8f8cSSatish Balay 
666a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
667a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
668a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
669b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
670a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
671b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
672a30f8f8cSSatish Balay   PetscFunctionReturn(0);
673a30f8f8cSSatish Balay }
674a30f8f8cSSatish Balay 
6754a2ae208SSatish Balay #undef __FUNCT__
6764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
677dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
678a30f8f8cSSatish Balay {
679a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
680a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
681a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
682*6849ba73SBarry Smith   PetscErrorCode ierr;
683*6849ba73SBarry Smith   int         i,j,rstart,ncols,n,flg,bs2=baij->bs2;
684a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
685a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
686a30f8f8cSSatish Balay   MatScalar   *val;
687a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
688a30f8f8cSSatish Balay 
689a30f8f8cSSatish Balay   PetscFunctionBegin;
690a30f8f8cSSatish Balay 
691a30f8f8cSSatish Balay   if (!baij->donotstash) {
692a30f8f8cSSatish Balay     while (1) {
693a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
694a30f8f8cSSatish Balay       /*
69556faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
69656faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm);
697a30f8f8cSSatish Balay       */
698a30f8f8cSSatish Balay       if (!flg) break;
699a30f8f8cSSatish Balay 
700a30f8f8cSSatish Balay       for (i=0; i<n;) {
701a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
702a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
703a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
704a30f8f8cSSatish Balay         else       ncols = n-i;
705a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
706a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
707a30f8f8cSSatish Balay         i = j;
708a30f8f8cSSatish Balay       }
709a30f8f8cSSatish Balay     }
710a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
711a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
712a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
713a30f8f8cSSatish Balay        restore the original flags */
714a30f8f8cSSatish Balay     r1 = baij->roworiented;
715a30f8f8cSSatish Balay     r2 = a->roworiented;
716a30f8f8cSSatish Balay     r3 = b->roworiented;
717a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
718a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
719a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
720a30f8f8cSSatish Balay     while (1) {
721a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
722a30f8f8cSSatish Balay       if (!flg) break;
723a30f8f8cSSatish Balay 
724a30f8f8cSSatish Balay       for (i=0; i<n;) {
725a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
726a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
727a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
728a30f8f8cSSatish Balay         else       ncols = n-i;
729a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
730a30f8f8cSSatish Balay         i = j;
731a30f8f8cSSatish Balay       }
732a30f8f8cSSatish Balay     }
733a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
734a30f8f8cSSatish Balay     baij->roworiented = r1;
735a30f8f8cSSatish Balay     a->roworiented    = r2;
736a30f8f8cSSatish Balay     b->roworiented    = r3;
737a30f8f8cSSatish Balay   }
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
740a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
741a30f8f8cSSatish Balay 
742a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
743a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
744a30f8f8cSSatish Balay   /*
745a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
746a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
747a30f8f8cSSatish Balay   */
748a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
749a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
750a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
751c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
752a30f8f8cSSatish Balay     }
753a30f8f8cSSatish Balay   }
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
75640781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
757a30f8f8cSSatish Balay   }
758a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
759a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
760a30f8f8cSSatish Balay 
761a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
762a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
763f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
764a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
765a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
766a30f8f8cSSatish Balay   }
767a30f8f8cSSatish Balay #endif
768a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
769c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
770a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
771a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
772a30f8f8cSSatish Balay   }
773a30f8f8cSSatish Balay 
774a30f8f8cSSatish Balay   if (baij->rowvalues) {
775a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
776a30f8f8cSSatish Balay     baij->rowvalues = 0;
777a30f8f8cSSatish Balay   }
7785222a1afSHong Zhang 
779a30f8f8cSSatish Balay   PetscFunctionReturn(0);
780a30f8f8cSSatish Balay }
781a30f8f8cSSatish Balay 
7824a2ae208SSatish Balay #undef __FUNCT__
7834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
784*6849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
785a30f8f8cSSatish Balay {
786a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
787dfbe8321SBarry Smith   PetscErrorCode ierr;
788dfbe8321SBarry Smith   int bs = baij->bs,size = baij->size,rank = baij->rank;
78932077d6dSBarry Smith   PetscTruth        iascii,isdraw;
790b0a32e0cSBarry Smith   PetscViewer       sviewer;
791f3ef73ceSBarry Smith   PetscViewerFormat format;
792a30f8f8cSSatish Balay 
793a30f8f8cSSatish Balay   PetscFunctionBegin;
79432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
795fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
79632077d6dSBarry Smith   if (iascii) {
797b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
798456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
799a30f8f8cSSatish Balay       MatInfo info;
800a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
801a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
802b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
803b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
804a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
805a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
806b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
807a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
808b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
809b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
810a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
811a30f8f8cSSatish Balay       PetscFunctionReturn(0);
812fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
813b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       PetscFunctionReturn(0);
815a30f8f8cSSatish Balay     }
816a30f8f8cSSatish Balay   }
817a30f8f8cSSatish Balay 
818a30f8f8cSSatish Balay   if (isdraw) {
819b0a32e0cSBarry Smith     PetscDraw       draw;
820a30f8f8cSSatish Balay     PetscTruth isnull;
821b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
822b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
823a30f8f8cSSatish Balay   }
824a30f8f8cSSatish Balay 
825a30f8f8cSSatish Balay   if (size == 1) {
826e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
827a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
828a30f8f8cSSatish Balay   } else {
829a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
830a30f8f8cSSatish Balay     Mat         A;
83165d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
83265d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
833b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
834a30f8f8cSSatish Balay     MatScalar   *a;
835a30f8f8cSSatish Balay 
836f204ca49SKris Buschelman     /* Should this be the same type as mat? */
837a30f8f8cSSatish Balay     if (!rank) {
838f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
839a30f8f8cSSatish Balay     } else {
840f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
841a30f8f8cSSatish Balay     }
842f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
843f204ca49SKris Buschelman     ierr = MatMPISBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
844b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
845a30f8f8cSSatish Balay 
846a30f8f8cSSatish Balay     /* copy over the A part */
84765d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
848a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
84982502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
850a30f8f8cSSatish Balay 
851a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
852a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
853a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
854a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
855a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
856a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
857a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
858a30f8f8cSSatish Balay           col++; a += bs;
859a30f8f8cSSatish Balay         }
860a30f8f8cSSatish Balay       }
861a30f8f8cSSatish Balay     }
862a30f8f8cSSatish Balay     /* copy over the B part */
86365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
86465d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
865a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
866a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
867a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
868a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
869a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
870a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
871a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
872a30f8f8cSSatish Balay           col++; a += bs;
873a30f8f8cSSatish Balay         }
874a30f8f8cSSatish Balay       }
875a30f8f8cSSatish Balay     }
876a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
877a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
878a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
879a30f8f8cSSatish Balay     /*
880a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
881b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
882a30f8f8cSSatish Balay     */
883b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
88465d70643SHong Zhang     if (!rank) {
885e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
886a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
887a30f8f8cSSatish Balay     }
888b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
889a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
890a30f8f8cSSatish Balay   }
891a30f8f8cSSatish Balay   PetscFunctionReturn(0);
892a30f8f8cSSatish Balay }
893a30f8f8cSSatish Balay 
8944a2ae208SSatish Balay #undef __FUNCT__
8954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
896dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
897a30f8f8cSSatish Balay {
898dfbe8321SBarry Smith   PetscErrorCode ierr;
89932077d6dSBarry Smith   PetscTruth iascii,isdraw,issocket,isbinary;
900a30f8f8cSSatish Balay 
901a30f8f8cSSatish Balay   PetscFunctionBegin;
90232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
903fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
904b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
905fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
90632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
907a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
908a30f8f8cSSatish Balay   } else {
90929bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
910a30f8f8cSSatish Balay   }
911a30f8f8cSSatish Balay   PetscFunctionReturn(0);
912a30f8f8cSSatish Balay }
913a30f8f8cSSatish Balay 
9144a2ae208SSatish Balay #undef __FUNCT__
9154a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
916dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
917a30f8f8cSSatish Balay {
918a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
919dfbe8321SBarry Smith   PetscErrorCode ierr;
920a30f8f8cSSatish Balay 
921a30f8f8cSSatish Balay   PetscFunctionBegin;
922a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
923b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
924a30f8f8cSSatish Balay #endif
925a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
926a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
927a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
928a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
929a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
930a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
931a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
932a30f8f8cSSatish Balay #else
933a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
934a30f8f8cSSatish Balay #endif
935a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
936a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
937a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
93840781036SHong Zhang   if (baij->slvec0) {
93940781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
94040781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
94140781036SHong Zhang   }
94240781036SHong Zhang   if (baij->slvec1) {
94340781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
94440781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
94540781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
94640781036SHong Zhang   }
94740781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
948a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
949a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
950a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
951a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
952a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
953a30f8f8cSSatish Balay #endif
954a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
955a30f8f8cSSatish Balay   PetscFunctionReturn(0);
956a30f8f8cSSatish Balay }
957a30f8f8cSSatish Balay 
9584a2ae208SSatish Balay #undef __FUNCT__
959a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
960dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
961a9d4b620SHong Zhang {
962a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
963dfbe8321SBarry Smith   PetscErrorCode ierr;
964dfbe8321SBarry Smith   int nt,mbs=a->mbs,bs=a->bs;
965a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
966a9d4b620SHong Zhang 
967a9d4b620SHong Zhang   PetscFunctionBegin;
968a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
969a9d4b620SHong Zhang   if (nt != A->n) {
970a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
971a9d4b620SHong Zhang   }
972a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
973a9d4b620SHong Zhang   if (nt != A->m) {
974a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
975a9d4b620SHong Zhang   }
976a9d4b620SHong Zhang 
977a9d4b620SHong Zhang   /* diagonal part */
978a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
979a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
980a9d4b620SHong Zhang 
981a9d4b620SHong Zhang   /* subdiagonal part */
982a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
983a9d4b620SHong Zhang 
984a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9851ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9861ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
987a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9881ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
989a9d4b620SHong Zhang 
990a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9911ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
992a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
993a9d4b620SHong Zhang 
994a9d4b620SHong Zhang   /* supperdiagonal part */
995a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
996a9d4b620SHong Zhang 
997a9d4b620SHong Zhang   PetscFunctionReturn(0);
998a9d4b620SHong Zhang }
999a9d4b620SHong Zhang 
1000a9d4b620SHong Zhang #undef __FUNCT__
100140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1002dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1003a30f8f8cSSatish Balay {
1004a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1005dfbe8321SBarry Smith   PetscErrorCode ierr;
1006dfbe8321SBarry Smith   int nt;
1007a30f8f8cSSatish Balay 
1008a30f8f8cSSatish Balay   PetscFunctionBegin;
1009a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1010b5df2d14SHong Zhang   if (nt != A->n) {
101129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1012a30f8f8cSSatish Balay   }
1013a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1014b5df2d14SHong Zhang   if (nt != A->m) {
101529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1016a30f8f8cSSatish Balay   }
101765d70643SHong Zhang 
1018b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1019b941877fSHong Zhang   /* do diagonal part */
1020b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1021b941877fSHong Zhang   /* do supperdiagonal part */
1022b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1023b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1024b941877fSHong Zhang   /* do subdiagonal part */
1025b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1026b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1027b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
102865d70643SHong Zhang 
1029a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1030a30f8f8cSSatish Balay }
1031a30f8f8cSSatish Balay 
10324a2ae208SSatish Balay #undef __FUNCT__
10334a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1034dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1035a30f8f8cSSatish Balay {
1036de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1037dfbe8321SBarry Smith   PetscErrorCode ierr;
1038dfbe8321SBarry Smith   int mbs=a->mbs,bs=a->bs;
1039a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
1040a9d4b620SHong Zhang 
1041a9d4b620SHong Zhang   PetscFunctionBegin;
1042a9d4b620SHong Zhang   /*
104356faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
104456faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1045a9d4b620SHong Zhang   */
1046a9d4b620SHong Zhang   /* diagonal part */
1047a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1048a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1049a9d4b620SHong Zhang 
1050a9d4b620SHong Zhang   /* subdiagonal part */
1051a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1052a9d4b620SHong Zhang 
1053a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10541ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10551ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1056a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
10571ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1058a9d4b620SHong Zhang 
1059a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
10601ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1061a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1062a9d4b620SHong Zhang 
1063a9d4b620SHong Zhang   /* supperdiagonal part */
1064a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1065a9d4b620SHong Zhang 
1066a9d4b620SHong Zhang   PetscFunctionReturn(0);
1067a9d4b620SHong Zhang }
1068a9d4b620SHong Zhang 
1069a9d4b620SHong Zhang #undef __FUNCT__
1070a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1071dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1072a9d4b620SHong Zhang {
1073a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1074dfbe8321SBarry Smith   PetscErrorCode ierr;
1075a30f8f8cSSatish Balay 
1076a30f8f8cSSatish Balay   PetscFunctionBegin;
1077b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1078b941877fSHong Zhang   /* do diagonal part */
1079b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1080b941877fSHong Zhang   /* do supperdiagonal part */
1081b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1082de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1083de8b6608SHong Zhang 
1084b941877fSHong Zhang   /* do subdiagonal part */
1085a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1086a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1087a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1088aa482183SHong Zhang 
1089a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1090a30f8f8cSSatish Balay }
1091a30f8f8cSSatish Balay 
10924a2ae208SSatish Balay #undef __FUNCT__
10934a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1094dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1095a30f8f8cSSatish Balay {
1096dfbe8321SBarry Smith   PetscErrorCode ierr;
10975a7c0312SHong Zhang 
1098a30f8f8cSSatish Balay   PetscFunctionBegin;
10995a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
11005a7c0312SHong Zhang   PetscFunctionReturn(0);
1101a30f8f8cSSatish Balay }
1102a30f8f8cSSatish Balay 
11034a2ae208SSatish Balay #undef __FUNCT__
11044a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1105dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1106a30f8f8cSSatish Balay {
1107dfbe8321SBarry Smith   PetscErrorCode ierr;
11085a7c0312SHong Zhang 
1109a30f8f8cSSatish Balay   PetscFunctionBegin;
11105a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
11115a7c0312SHong Zhang   PetscFunctionReturn(0);
1112a30f8f8cSSatish Balay }
1113a30f8f8cSSatish Balay 
1114a30f8f8cSSatish Balay /*
1115a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1116a30f8f8cSSatish Balay    diagonal block
1117a30f8f8cSSatish Balay */
11184a2ae208SSatish Balay #undef __FUNCT__
11194a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1120dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1121a30f8f8cSSatish Balay {
1122a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1123dfbe8321SBarry Smith   PetscErrorCode ierr;
1124a30f8f8cSSatish Balay 
1125a30f8f8cSSatish Balay   PetscFunctionBegin;
112629bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1127a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1128a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1129a30f8f8cSSatish Balay }
1130a30f8f8cSSatish Balay 
11314a2ae208SSatish Balay #undef __FUNCT__
11324a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1133dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1134a30f8f8cSSatish Balay {
1135a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1136dfbe8321SBarry Smith   PetscErrorCode ierr;
1137a30f8f8cSSatish Balay 
1138a30f8f8cSSatish Balay   PetscFunctionBegin;
1139a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1140a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1141a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1142a30f8f8cSSatish Balay }
1143a30f8f8cSSatish Balay 
11444a2ae208SSatish Balay #undef __FUNCT__
11454a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
1146dfbe8321SBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1147a30f8f8cSSatish Balay {
1148a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
114987828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1150*6849ba73SBarry Smith   PetscErrorCode ierr;
1151*6849ba73SBarry Smith   int            bs = mat->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1152a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1153a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1154a30f8f8cSSatish Balay 
1155a30f8f8cSSatish Balay   PetscFunctionBegin;
115629bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1157a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1158a30f8f8cSSatish Balay 
1159a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1160a30f8f8cSSatish Balay     /*
1161a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1162a30f8f8cSSatish Balay     */
1163a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1164a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1165a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1166a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1167a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1168a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1169a30f8f8cSSatish Balay     }
117087828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1171a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1172a30f8f8cSSatish Balay   }
1173a30f8f8cSSatish Balay 
117429bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1175a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1176a30f8f8cSSatish Balay 
1177a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1178a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1179a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1180a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1181a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1182a30f8f8cSSatish Balay   nztot = nzA + nzB;
1183a30f8f8cSSatish Balay 
1184a30f8f8cSSatish Balay   cmap  = mat->garray;
1185a30f8f8cSSatish Balay   if (v  || idx) {
1186a30f8f8cSSatish Balay     if (nztot) {
1187a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1188a30f8f8cSSatish Balay       int imark = -1;
1189a30f8f8cSSatish Balay       if (v) {
1190a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1191a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1192a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1193a30f8f8cSSatish Balay           else break;
1194a30f8f8cSSatish Balay         }
1195a30f8f8cSSatish Balay         imark = i;
1196a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1197a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1198a30f8f8cSSatish Balay       }
1199a30f8f8cSSatish Balay       if (idx) {
1200a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1201a30f8f8cSSatish Balay         if (imark > -1) {
1202a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1203a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1204a30f8f8cSSatish Balay           }
1205a30f8f8cSSatish Balay         } else {
1206a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1207a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1208a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1209a30f8f8cSSatish Balay             else break;
1210a30f8f8cSSatish Balay           }
1211a30f8f8cSSatish Balay           imark = i;
1212a30f8f8cSSatish Balay         }
1213a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1214a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1215a30f8f8cSSatish Balay       }
1216a30f8f8cSSatish Balay     } else {
1217a30f8f8cSSatish Balay       if (idx) *idx = 0;
1218a30f8f8cSSatish Balay       if (v)   *v   = 0;
1219a30f8f8cSSatish Balay     }
1220a30f8f8cSSatish Balay   }
1221a30f8f8cSSatish Balay   *nz = nztot;
1222a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1223a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1224a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1225a30f8f8cSSatish Balay }
1226a30f8f8cSSatish Balay 
12274a2ae208SSatish Balay #undef __FUNCT__
12284a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
1229dfbe8321SBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1230a30f8f8cSSatish Balay {
1231a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1232a30f8f8cSSatish Balay 
1233a30f8f8cSSatish Balay   PetscFunctionBegin;
1234a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
123529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1236a30f8f8cSSatish Balay   }
1237a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1238a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1239a30f8f8cSSatish Balay }
1240a30f8f8cSSatish Balay 
12414a2ae208SSatish Balay #undef __FUNCT__
12424a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1243dfbe8321SBarry Smith PetscErrorCode MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1244a30f8f8cSSatish Balay {
1245a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1246a30f8f8cSSatish Balay 
1247a30f8f8cSSatish Balay   PetscFunctionBegin;
1248a30f8f8cSSatish Balay   *bs = baij->bs;
1249a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1250a30f8f8cSSatish Balay }
1251a30f8f8cSSatish Balay 
12524a2ae208SSatish Balay #undef __FUNCT__
12534a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1254dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1255a30f8f8cSSatish Balay {
1256a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1257dfbe8321SBarry Smith   PetscErrorCode ierr;
1258a30f8f8cSSatish Balay 
1259a30f8f8cSSatish Balay   PetscFunctionBegin;
1260a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1261a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1262a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1263a30f8f8cSSatish Balay }
1264a30f8f8cSSatish Balay 
12654a2ae208SSatish Balay #undef __FUNCT__
12664a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1267dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1268a30f8f8cSSatish Balay {
1269a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1270a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1271dfbe8321SBarry Smith   PetscErrorCode ierr;
1272a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1273a30f8f8cSSatish Balay 
1274a30f8f8cSSatish Balay   PetscFunctionBegin;
1275f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1276a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1277a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1278a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1279a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1280a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1281a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1282a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1283a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1284a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1285a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1286a30f8f8cSSatish Balay     info->memory       = isend[3];
1287a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1288a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1289d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1290a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1291a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1292a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1293a30f8f8cSSatish Balay     info->memory       = irecv[3];
1294a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1295a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1296d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1297a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1298a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1299a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1300a30f8f8cSSatish Balay     info->memory       = irecv[3];
1301a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1302a30f8f8cSSatish Balay   } else {
130329bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1304a30f8f8cSSatish Balay   }
1305f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1306f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1307f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1308f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1309a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1310a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1311a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1312a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1313a30f8f8cSSatish Balay }
1314a30f8f8cSSatish Balay 
13154a2ae208SSatish Balay #undef __FUNCT__
13164a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1317dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1318a30f8f8cSSatish Balay {
1319a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1320dfbe8321SBarry Smith   PetscErrorCode ierr;
1321a30f8f8cSSatish Balay 
1322a30f8f8cSSatish Balay   PetscFunctionBegin;
1323e98b92d7SKris Buschelman   switch (op) {
1324e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1325e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1326e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1327e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1328e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1329e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1330e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1331a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1332a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1333e98b92d7SKris Buschelman     break;
1334e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1335a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1336a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1337a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1338e98b92d7SKris Buschelman     break;
1339e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1340e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1341e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1342b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1343e98b92d7SKris Buschelman     break;
1344e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1345a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1346a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1347a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1348e98b92d7SKris Buschelman     break;
1349e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1350a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1351e98b92d7SKris Buschelman     break;
1352e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
135329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1354e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1355a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1356e98b92d7SKris Buschelman     break;
13579a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
13589a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
13599a4540c5SBarry Smith   case MAT_HERMITIAN:
13609a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
136177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
136277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13639a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
13649a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
13659a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
136677e54ba9SKris Buschelman     break;
1367e98b92d7SKris Buschelman   default:
136829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1369a30f8f8cSSatish Balay   }
1370a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1371a30f8f8cSSatish Balay }
1372a30f8f8cSSatish Balay 
13734a2ae208SSatish Balay #undef __FUNCT__
13748115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1375dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1376a30f8f8cSSatish Balay {
1377dfbe8321SBarry Smith   PetscErrorCode ierr;
1378a30f8f8cSSatish Balay   PetscFunctionBegin;
1379999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13808115998fSBarry Smith   PetscFunctionReturn(0);
1381a30f8f8cSSatish Balay }
1382a30f8f8cSSatish Balay 
13834a2ae208SSatish Balay #undef __FUNCT__
13844a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1385dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1386a30f8f8cSSatish Balay {
1387a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1388a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1389dfbe8321SBarry Smith   PetscErrorCode ierr;
1390dfbe8321SBarry Smith   int s1,s2,s3;
1391a30f8f8cSSatish Balay 
1392a30f8f8cSSatish Balay   PetscFunctionBegin;
1393a30f8f8cSSatish Balay   if (ll != rr) {
139429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1395a30f8f8cSSatish Balay   }
1396a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1397a30f8f8cSSatish Balay   if (rr) {
1398a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
139929bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1400a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1401a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1402a30f8f8cSSatish Balay     /*} if (ll) { */
1403a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
140429bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1405a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1406a30f8f8cSSatish Balay     /* } */
1407a30f8f8cSSatish Balay   /* scale  the diagonal block */
1408a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1409a30f8f8cSSatish Balay 
1410a30f8f8cSSatish Balay   /* if (rr) { */
1411a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1412a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1413a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1414a30f8f8cSSatish Balay   }
1415a30f8f8cSSatish Balay 
1416a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1417a30f8f8cSSatish Balay }
1418a30f8f8cSSatish Balay 
14194a2ae208SSatish Balay #undef __FUNCT__
14204a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
1421dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag)
1422a30f8f8cSSatish Balay {
1423a30f8f8cSSatish Balay   PetscFunctionBegin;
1424c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1425a30f8f8cSSatish Balay }
1426a30f8f8cSSatish Balay 
14274a2ae208SSatish Balay #undef __FUNCT__
14284a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1429dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1430a30f8f8cSSatish Balay {
1431a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1432a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1433a30f8f8cSSatish Balay   static int  called = 0;
1434dfbe8321SBarry Smith   PetscErrorCode ierr;
1435a30f8f8cSSatish Balay 
1436a30f8f8cSSatish Balay   PetscFunctionBegin;
1437a30f8f8cSSatish Balay   if (!a->rank) {
1438a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1439a30f8f8cSSatish Balay   }
1440a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1441a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1442a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1443a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1444a30f8f8cSSatish Balay }
1445a30f8f8cSSatish Balay 
14464a2ae208SSatish Balay #undef __FUNCT__
14474a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1448dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1449a30f8f8cSSatish Balay {
1450f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1451dfbe8321SBarry Smith   PetscErrorCode ierr;
1452a30f8f8cSSatish Balay 
1453a30f8f8cSSatish Balay   PetscFunctionBegin;
1454a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1455a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1456a30f8f8cSSatish Balay }
1457a30f8f8cSSatish Balay 
1458*6849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1459a30f8f8cSSatish Balay 
14604a2ae208SSatish Balay #undef __FUNCT__
14614a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1462dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1463a30f8f8cSSatish Balay {
1464a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1465a30f8f8cSSatish Balay   Mat         a,b,c,d;
1466a30f8f8cSSatish Balay   PetscTruth  flg;
1467dfbe8321SBarry Smith   PetscErrorCode ierr;
1468a30f8f8cSSatish Balay 
1469a30f8f8cSSatish Balay   PetscFunctionBegin;
1470a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1471a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1472a30f8f8cSSatish Balay 
1473a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1474a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1475a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1476a30f8f8cSSatish Balay   }
1477a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1478a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1479a30f8f8cSSatish Balay }
1480a30f8f8cSSatish Balay 
14814a2ae208SSatish Balay #undef __FUNCT__
14824a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1483dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1484273d9f13SBarry Smith {
1485dfbe8321SBarry Smith   PetscErrorCode ierr;
1486273d9f13SBarry Smith 
1487273d9f13SBarry Smith   PetscFunctionBegin;
1488273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1489273d9f13SBarry Smith   PetscFunctionReturn(0);
1490273d9f13SBarry Smith }
1491a5e6ed63SBarry Smith 
1492a5e6ed63SBarry Smith #undef __FUNCT__
1493a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
1494dfbe8321SBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,int n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1495a5e6ed63SBarry Smith {
1496*6849ba73SBarry Smith   PetscErrorCode ierr;
1497*6849ba73SBarry Smith   int        i;
1498a5e6ed63SBarry Smith   PetscTruth flg;
1499a5e6ed63SBarry Smith 
1500*6849ba73SBarry Smith   PetscFunctionBegin;
1501a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1502a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1503a5e6ed63SBarry Smith     if (!flg) {
1504a5e6ed63SBarry Smith       SETERRQ(1,"Can only get symmetric submatrix for MPISBAIJ matrices");
1505a5e6ed63SBarry Smith     }
1506a5e6ed63SBarry Smith   }
1507a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1508a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1509a5e6ed63SBarry Smith }
1510a5e6ed63SBarry Smith 
1511a5e6ed63SBarry Smith 
1512a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1513a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1514a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1515a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1516a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1517a9d4b620SHong Zhang        MatMult_MPISBAIJ,
151897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1519a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1520a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1521a30f8f8cSSatish Balay        0,
1522a30f8f8cSSatish Balay        0,
1523a30f8f8cSSatish Balay        0,
152497304618SKris Buschelman /*10*/ 0,
1525a30f8f8cSSatish Balay        0,
1526a30f8f8cSSatish Balay        0,
15272798e883SHong Zhang        MatRelax_MPISBAIJ,
1528a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
152997304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1530a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1531a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1532a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1533a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
153497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1535a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1536a30f8f8cSSatish Balay        0,
1537a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1538a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
153997304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ,
1540a30f8f8cSSatish Balay        0,
1541a30f8f8cSSatish Balay        0,
1542a30f8f8cSSatish Balay        0,
1543a30f8f8cSSatish Balay        0,
154497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1545b5df2d14SHong Zhang        0,
1546a30f8f8cSSatish Balay        0,
1547a30f8f8cSSatish Balay        0,
1548a30f8f8cSSatish Balay        0,
154997304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1550a30f8f8cSSatish Balay        0,
1551a30f8f8cSSatish Balay        0,
1552a30f8f8cSSatish Balay        0,
1553a30f8f8cSSatish Balay        0,
155497304618SKris Buschelman /*40*/ 0,
1555a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1556d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1557a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1558a30f8f8cSSatish Balay        0,
155997304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1560a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1561a30f8f8cSSatish Balay        0,
1562a30f8f8cSSatish Balay        0,
1563a30f8f8cSSatish Balay        0,
156497304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ,
1565a30f8f8cSSatish Balay        0,
1566a30f8f8cSSatish Balay        0,
1567a30f8f8cSSatish Balay        0,
1568a30f8f8cSSatish Balay        0,
156997304618SKris Buschelman /*55*/ 0,
1570a30f8f8cSSatish Balay        0,
1571a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1572a30f8f8cSSatish Balay        0,
1573a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
157497304618SKris Buschelman /*60*/ 0,
1575a30f8f8cSSatish Balay        0,
1576a30f8f8cSSatish Balay        0,
15778a124369SBarry Smith        MatGetPetscMaps_Petsc,
157824d5174aSHong Zhang        0,
157997304618SKris Buschelman /*65*/ 0,
158024d5174aSHong Zhang        0,
158124d5174aSHong Zhang        0,
158224d5174aSHong Zhang        0,
158324d5174aSHong Zhang        0,
158497304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
158524d5174aSHong Zhang        0,
158697304618SKris Buschelman        0,
158797304618SKris Buschelman        0,
158897304618SKris Buschelman        0,
158997304618SKris Buschelman /*75*/ 0,
159097304618SKris Buschelman        0,
159197304618SKris Buschelman        0,
159297304618SKris Buschelman        0,
159397304618SKris Buschelman        0,
159497304618SKris Buschelman /*80*/ 0,
159597304618SKris Buschelman        0,
159697304618SKris Buschelman        0,
159797304618SKris Buschelman        0,
159897304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ
159997304618SKris Buschelman };
1600a30f8f8cSSatish Balay 
1601a30f8f8cSSatish Balay 
1602a30f8f8cSSatish Balay EXTERN_C_BEGIN
16034a2ae208SSatish Balay #undef __FUNCT__
16044a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1605dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1606a30f8f8cSSatish Balay {
1607a30f8f8cSSatish Balay   PetscFunctionBegin;
1608a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1609a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1610a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1611a30f8f8cSSatish Balay }
1612a30f8f8cSSatish Balay EXTERN_C_END
1613a30f8f8cSSatish Balay 
1614273d9f13SBarry Smith EXTERN_C_BEGIN
16154a2ae208SSatish Balay #undef __FUNCT__
1616a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1617dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1618a23d5eceSKris Buschelman {
1619a23d5eceSKris Buschelman   Mat_MPISBAIJ *b;
1620dfbe8321SBarry Smith   PetscErrorCode ierr;
1621dfbe8321SBarry Smith   int i,mbs,Mbs;
1622a23d5eceSKris Buschelman 
1623a23d5eceSKris Buschelman   PetscFunctionBegin;
1624a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1625a23d5eceSKris Buschelman 
1626a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1627a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1628a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1629a23d5eceSKris Buschelman   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1630a23d5eceSKris Buschelman   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1631a23d5eceSKris Buschelman   if (d_nnz) {
1632a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1633a23d5eceSKris Buschelman       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1634a23d5eceSKris Buschelman     }
1635a23d5eceSKris Buschelman   }
1636a23d5eceSKris Buschelman   if (o_nnz) {
1637a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1638a23d5eceSKris Buschelman       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1639a23d5eceSKris Buschelman     }
1640a23d5eceSKris Buschelman   }
1641a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1642a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1643a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1644a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1645a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1646a23d5eceSKris Buschelman 
1647a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1648a23d5eceSKris Buschelman   mbs = B->m/bs;
1649a23d5eceSKris Buschelman   Mbs = B->M/bs;
1650a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
1651a23d5eceSKris Buschelman     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1652a23d5eceSKris Buschelman   }
1653a23d5eceSKris Buschelman 
1654a23d5eceSKris Buschelman   b->bs  = bs;
1655a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1656a23d5eceSKris Buschelman   b->mbs = mbs;
1657a23d5eceSKris Buschelman   b->nbs = mbs;
1658a23d5eceSKris Buschelman   b->Mbs = Mbs;
1659a23d5eceSKris Buschelman   b->Nbs = Mbs;
1660a23d5eceSKris Buschelman 
1661a23d5eceSKris Buschelman   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1662a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1663a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1664a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1665a23d5eceSKris Buschelman   }
1666a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1667a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1668a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1669a23d5eceSKris Buschelman   b->cend      = b->rend;
1670a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1671a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1672a23d5eceSKris Buschelman   }
1673a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1674a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1675a23d5eceSKris Buschelman 
1676a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1677a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1678a23d5eceSKris Buschelman 
16799c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
16809c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1681c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
16829c097c71SKris Buschelman   PetscLogObjectParent(B,b->A);
16839c097c71SKris Buschelman 
16849c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
16854aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1686589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
16879c097c71SKris Buschelman   PetscLogObjectParent(B,b->B);
1688a23d5eceSKris Buschelman 
1689a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1690a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1691a23d5eceSKris Buschelman 
1692a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1693a23d5eceSKris Buschelman }
1694a23d5eceSKris Buschelman EXTERN_C_END
1695a23d5eceSKris Buschelman 
16960bad9183SKris Buschelman /*MC
1697fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16980bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16990bad9183SKris Buschelman 
17000bad9183SKris Buschelman    Options Database Keys:
17010bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17020bad9183SKris Buschelman 
17030bad9183SKris Buschelman   Level: beginner
17040bad9183SKris Buschelman 
17050bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17060bad9183SKris Buschelman M*/
17070bad9183SKris Buschelman 
1708a23d5eceSKris Buschelman EXTERN_C_BEGIN
1709a23d5eceSKris Buschelman #undef __FUNCT__
17104a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1711dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1712b5df2d14SHong Zhang {
1713b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1714dfbe8321SBarry Smith   PetscErrorCode ierr;
1715b5df2d14SHong Zhang   PetscTruth   flg;
1716b5df2d14SHong Zhang 
1717b5df2d14SHong Zhang   PetscFunctionBegin;
1718b5df2d14SHong Zhang 
1719b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1720b0a32e0cSBarry Smith   B->data = (void*)b;
1721b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1722b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1723b5df2d14SHong Zhang 
1724b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1725b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1726b5df2d14SHong Zhang   B->mapping    = 0;
1727b5df2d14SHong Zhang   B->factor     = 0;
1728b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1729b5df2d14SHong Zhang 
1730b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1731b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1732b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1733b5df2d14SHong Zhang 
1734b5df2d14SHong Zhang   /* build local table of row and column ownerships */
173582502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1736273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1737273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1738b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1739b5df2d14SHong Zhang 
1740b5df2d14SHong Zhang   /* build cache for off array entries formed */
1741b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1742b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1743b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1744b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1745b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1746b5df2d14SHong Zhang 
1747f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1748b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
174964a35ccbSBarry Smith   b->setvalueslen     = 0;
1750b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1751b5df2d14SHong Zhang #endif
1752b5df2d14SHong Zhang 
1753b5df2d14SHong Zhang   /* stuff used in block assembly */
1754b5df2d14SHong Zhang   b->barray       = 0;
1755b5df2d14SHong Zhang 
1756b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1757b5df2d14SHong Zhang   b->lvec         = 0;
1758b5df2d14SHong Zhang   b->Mvctx        = 0;
175940781036SHong Zhang   b->slvec0       = 0;
176040781036SHong Zhang   b->slvec0b      = 0;
176140781036SHong Zhang   b->slvec1       = 0;
176240781036SHong Zhang   b->slvec1a      = 0;
176340781036SHong Zhang   b->slvec1b      = 0;
176440781036SHong Zhang   b->sMvctx       = 0;
1765b5df2d14SHong Zhang 
1766b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1767b5df2d14SHong Zhang   b->rowindices   = 0;
1768b5df2d14SHong Zhang   b->rowvalues    = 0;
1769b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1770b5df2d14SHong Zhang 
1771b5df2d14SHong Zhang   /* hash table stuff */
1772b5df2d14SHong Zhang   b->ht           = 0;
1773b5df2d14SHong Zhang   b->hd           = 0;
1774b5df2d14SHong Zhang   b->ht_size      = 0;
1775b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1776b5df2d14SHong Zhang   b->ht_fact      = 0;
1777b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1778b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1779b5df2d14SHong Zhang 
1780e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1781b5df2d14SHong Zhang   if (flg) {
1782f6275e2eSBarry Smith     PetscReal fact = 1.39;
1783b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1784e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1785b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1786b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1787b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1788b5df2d14SHong Zhang   }
1789b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1790b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1791b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1792b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1793b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1794b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1795b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1796b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1797b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1798a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1799a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1800a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
180123ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
180223ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
180323ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
180423ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1805b5df2d14SHong Zhang   PetscFunctionReturn(0);
1806b5df2d14SHong Zhang }
1807273d9f13SBarry Smith EXTERN_C_END
1808b5df2d14SHong Zhang 
1809209238afSKris Buschelman /*MC
1810002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1811209238afSKris Buschelman 
1812209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1813209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1814209238afSKris Buschelman 
1815209238afSKris Buschelman    Options Database Keys:
1816209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1817209238afSKris Buschelman 
1818209238afSKris Buschelman   Level: beginner
1819209238afSKris Buschelman 
1820209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1821209238afSKris Buschelman M*/
1822209238afSKris Buschelman 
1823209238afSKris Buschelman EXTERN_C_BEGIN
1824209238afSKris Buschelman #undef __FUNCT__
1825209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1826dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A)
1827dfbe8321SBarry Smith {
1828*6849ba73SBarry Smith   PetscErrorCode ierr;
1829*6849ba73SBarry Smith   int size;
1830209238afSKris Buschelman 
1831209238afSKris Buschelman   PetscFunctionBegin;
1832209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1833209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1834209238afSKris Buschelman   if (size == 1) {
1835209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1836209238afSKris Buschelman   } else {
1837209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1838209238afSKris Buschelman   }
1839209238afSKris Buschelman   PetscFunctionReturn(0);
1840209238afSKris Buschelman }
1841209238afSKris Buschelman EXTERN_C_END
1842209238afSKris Buschelman 
18434a2ae208SSatish Balay #undef __FUNCT__
18444a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1845b5df2d14SHong Zhang /*@C
1846b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1847b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1848b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1849b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1850b5df2d14SHong Zhang 
1851b5df2d14SHong Zhang    Collective on Mat
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    Input Parameters:
1854b5df2d14SHong Zhang +  A - the matrix
1855b5df2d14SHong Zhang .  bs   - size of blockk
1856b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1857b5df2d14SHong Zhang            submatrix  (same for all local rows)
1858b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18596d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18606d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18616d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1862b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1863b5df2d14SHong Zhang            submatrix (same for all local rows).
1864b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1865b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1866b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1867b5df2d14SHong Zhang 
1868b5df2d14SHong Zhang 
1869b5df2d14SHong Zhang    Options Database Keys:
1870b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1871b5df2d14SHong Zhang                      block calculations (much slower)
1872b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1873b5df2d14SHong Zhang 
1874b5df2d14SHong Zhang    Notes:
1875b5df2d14SHong Zhang 
1876b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1877b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1878b5df2d14SHong Zhang 
1879b5df2d14SHong Zhang    Storage Information:
1880b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1881b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1882b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1883b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1884b5df2d14SHong Zhang 
1885b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1886b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1887b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1888b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1889b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1890b5df2d14SHong Zhang 
1891b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1892b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1893b5df2d14SHong Zhang 
1894b5df2d14SHong Zhang .vb
1895b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1896b5df2d14SHong Zhang           -------------------
1897b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1898b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1899b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1900b5df2d14SHong Zhang           -------------------
1901b5df2d14SHong Zhang .ve
1902b5df2d14SHong Zhang 
1903b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1904b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19056d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19066d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1907b5df2d14SHong Zhang 
19086d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19096d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1910b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1911b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1912b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1913b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1914b5df2d14SHong Zhang    matrices.
1915b5df2d14SHong Zhang 
1916b5df2d14SHong Zhang    Level: intermediate
1917b5df2d14SHong Zhang 
1918b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1919b5df2d14SHong Zhang 
1920b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1921b5df2d14SHong Zhang @*/
1922dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[])
1923b5df2d14SHong Zhang {
1924dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,int,int,const int[],int,const int[]);
1925b5df2d14SHong Zhang 
1926b5df2d14SHong Zhang   PetscFunctionBegin;
1927a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1928a23d5eceSKris Buschelman   if (f) {
1929a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1930b5df2d14SHong Zhang   }
1931b5df2d14SHong Zhang   PetscFunctionReturn(0);
1932b5df2d14SHong Zhang }
1933b5df2d14SHong Zhang 
19344a2ae208SSatish Balay #undef __FUNCT__
19354a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1936a30f8f8cSSatish Balay /*@C
1937a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1938a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1939a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1940a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1941a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1942a30f8f8cSSatish Balay 
1943a30f8f8cSSatish Balay    Collective on MPI_Comm
1944a30f8f8cSSatish Balay 
1945a30f8f8cSSatish Balay    Input Parameters:
1946a30f8f8cSSatish Balay +  comm - MPI communicator
1947a30f8f8cSSatish Balay .  bs   - size of blockk
1948a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1949a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1950a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1951a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1952a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1953a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1954a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1955a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1956a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1957a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1958a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19596d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19606d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19616d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1962a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1963a30f8f8cSSatish Balay            submatrix (same for all local rows).
1964a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1965a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1966a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1967a30f8f8cSSatish Balay 
1968a30f8f8cSSatish Balay    Output Parameter:
1969a30f8f8cSSatish Balay .  A - the matrix
1970a30f8f8cSSatish Balay 
1971a30f8f8cSSatish Balay    Options Database Keys:
1972a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1973a30f8f8cSSatish Balay                      block calculations (much slower)
1974a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1975a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1976a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1977a30f8f8cSSatish Balay 
1978a30f8f8cSSatish Balay    Notes:
1979a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1980a30f8f8cSSatish Balay    (possibly both).
1981a30f8f8cSSatish Balay 
1982a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1983a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1984a30f8f8cSSatish Balay 
1985a30f8f8cSSatish Balay    Storage Information:
1986a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1987a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1988a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1989a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1990a30f8f8cSSatish Balay 
1991a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1992a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1993a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1994a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1995a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1996a30f8f8cSSatish Balay 
1997a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1998a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay .vb
2001a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2002a30f8f8cSSatish Balay           -------------------
2003a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2004a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2005a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2006a30f8f8cSSatish Balay           -------------------
2007a30f8f8cSSatish Balay .ve
2008a30f8f8cSSatish Balay 
2009a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2010a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20116d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20126d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2013a30f8f8cSSatish Balay 
20146d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20156d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2016a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2017a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2018a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2019a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2020a30f8f8cSSatish Balay    matrices.
2021a30f8f8cSSatish Balay 
2022a30f8f8cSSatish Balay    Level: intermediate
2023a30f8f8cSSatish Balay 
2024a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2025a30f8f8cSSatish Balay 
2026a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2027a30f8f8cSSatish Balay @*/
2028a30f8f8cSSatish Balay 
2029dfbe8321SBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A)
2030a30f8f8cSSatish Balay {
2031*6849ba73SBarry Smith   PetscErrorCode ierr;
2032*6849ba73SBarry Smith   int size;
2033a30f8f8cSSatish Balay 
2034a30f8f8cSSatish Balay   PetscFunctionBegin;
2035b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2036273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2037273d9f13SBarry Smith   if (size > 1) {
2038b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2039b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2040273d9f13SBarry Smith   } else {
2041273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2042273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2043273d9f13SBarry Smith   }
2044a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2045a30f8f8cSSatish Balay }
2046a30f8f8cSSatish Balay 
2047a30f8f8cSSatish Balay 
20484a2ae208SSatish Balay #undef __FUNCT__
20494a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
2050*6849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2051a30f8f8cSSatish Balay {
2052a30f8f8cSSatish Balay   Mat          mat;
2053a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2054dfbe8321SBarry Smith   PetscErrorCode ierr;
2055dfbe8321SBarry Smith   int len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs;
2056387bc808SHong Zhang   PetscScalar  *array;
2057a30f8f8cSSatish Balay 
2058a30f8f8cSSatish Balay   PetscFunctionBegin;
2059a30f8f8cSSatish Balay   *newmat       = 0;
2060b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2061be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20621d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2063e1b6402fSHong Zhang 
206482327fa8SHong Zhang   mat->factor       = matin->factor;
2065273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20677fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20687fff6886SHong Zhang 
2069b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2070a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
2071a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2072a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2073a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2074a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2075a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2076a30f8f8cSSatish Balay 
2077a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2078a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2079a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2080a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2081a30f8f8cSSatish Balay   a->size         = oldmat->size;
2082a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2083a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2084a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2085a30f8f8cSSatish Balay   a->rowindices   = 0;
2086a30f8f8cSSatish Balay   a->rowvalues    = 0;
2087a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2088a30f8f8cSSatish Balay   a->barray       = 0;
2089a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2090a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2091a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2092a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2093a30f8f8cSSatish Balay 
2094a30f8f8cSSatish Balay   /* hash table stuff */
2095a30f8f8cSSatish Balay   a->ht           = 0;
2096a30f8f8cSSatish Balay   a->hd           = 0;
2097a30f8f8cSSatish Balay   a->ht_size      = 0;
2098a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2099a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2100a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2101a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2102a30f8f8cSSatish Balay 
2103a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
2104a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2105a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2106a30f8f8cSSatish Balay   if (oldmat->colmap) {
2107a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2108a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2109a30f8f8cSSatish Balay #else
211082502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2111b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2112a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2113a30f8f8cSSatish Balay #endif
2114a30f8f8cSSatish Balay   } else a->colmap = 0;
2115387bc808SHong Zhang 
2116a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
211782502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2118b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2119a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2120a30f8f8cSSatish Balay   } else a->garray = 0;
2121a30f8f8cSSatish Balay 
2122a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2123b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2124a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2125b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
212682327fa8SHong Zhang 
212782327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
2128387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
212982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
2130387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2131387bc808SHong Zhang 
2132387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21331ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2134387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2135387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21361ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21371ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2138387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21391ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
2140387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
2141387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2142387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0b);
2143387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1a);
2144387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1b);
2145387bc808SHong Zhang 
2146387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2147387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2148387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
2149387bc808SHong Zhang   PetscLogObjectParent(mat,a->sMvctx);
215082327fa8SHong Zhang 
2151a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2152b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2153a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2154b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2155b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2156a30f8f8cSSatish Balay   *newmat = mat;
2157a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2158a30f8f8cSSatish Balay }
2159a30f8f8cSSatish Balay 
2160a30f8f8cSSatish Balay #include "petscsys.h"
2161a30f8f8cSSatish Balay 
21624a2ae208SSatish Balay #undef __FUNCT__
21634a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2164dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
2165a30f8f8cSSatish Balay {
2166a30f8f8cSSatish Balay   Mat          A;
2167*6849ba73SBarry Smith   PetscErrorCode ierr;
2168*6849ba73SBarry Smith   int          i,nz,j,rstart,rend,fd;
216987828ca2SBarry Smith   PetscScalar  *vals,*buf;
2170a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2171a30f8f8cSSatish Balay   MPI_Status   status;
2172a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2173a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2174a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2175a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2176a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
2177a30f8f8cSSatish Balay 
2178a30f8f8cSSatish Balay   PetscFunctionBegin;
2179b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay 
2181a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2183a30f8f8cSSatish Balay   if (!rank) {
2184b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2185a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2186552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2187a30f8f8cSSatish Balay     if (header[3] < 0) {
218829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2189a30f8f8cSSatish Balay     }
2190a30f8f8cSSatish Balay   }
2191a30f8f8cSSatish Balay 
2192a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2193a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2194a30f8f8cSSatish Balay 
219529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2196a30f8f8cSSatish Balay 
2197a30f8f8cSSatish Balay   /*
2198a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2199a30f8f8cSSatish Balay      divisible by the blocksize
2200a30f8f8cSSatish Balay   */
2201a30f8f8cSSatish Balay   Mbs        = M/bs;
2202a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2203a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2204a30f8f8cSSatish Balay   else                  Mbs++;
2205a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2206b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2207a30f8f8cSSatish Balay   }
2208a30f8f8cSSatish Balay 
2209a30f8f8cSSatish Balay   /* determine ownership of all rows */
2210a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2211a30f8f8cSSatish Balay   m          = mbs*bs;
2212b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2214a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay   rowners[0] = 0;
2216a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2217a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2218a30f8f8cSSatish Balay   rstart = rowners[rank];
2219a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2220a30f8f8cSSatish Balay 
2221a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
222282502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay   if (!rank) {
2224b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
222782502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2229a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay   } else {
2232a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2233a30f8f8cSSatish Balay   }
2234a30f8f8cSSatish Balay 
22350222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2236a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
223782502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2238a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2239a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2240a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2241a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2242a30f8f8cSSatish Balay       }
2243a30f8f8cSSatish Balay     }
2244a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2245a30f8f8cSSatish Balay 
2246a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2247a30f8f8cSSatish Balay     maxnz = 0;
2248a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2249a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2250a30f8f8cSSatish Balay     }
225182502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay 
2253a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2254a30f8f8cSSatish Balay     nz     = procsnz[0];
225582502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     mycols = ibuf;
2257a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2258a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2259a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2260a30f8f8cSSatish Balay 
2261a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2262a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2263a30f8f8cSSatish Balay       nz   = procsnz[i];
2264a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay     }
2267a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2268a30f8f8cSSatish Balay     if (size != 1) {
2269a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2270a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2271a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2272a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2273a30f8f8cSSatish Balay     }
2274a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22750222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2276a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2277a30f8f8cSSatish Balay     nz = 0;
2278a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2279a30f8f8cSSatish Balay       nz += locrowlens[i];
2280a30f8f8cSSatish Balay     }
228182502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2282a30f8f8cSSatish Balay     mycols = ibuf;
2283a30f8f8cSSatish Balay     /* receive message of column indices*/
2284a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2285a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
228629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2287a30f8f8cSSatish Balay   }
2288a30f8f8cSSatish Balay 
2289a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
229082502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2291a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
229282502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2293a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2294a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2295a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2296a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2297a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2298a30f8f8cSSatish Balay     dcount  = 0;
2299a30f8f8cSSatish Balay     odcount = 0;
2300a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2301a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2302a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23030222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2304a30f8f8cSSatish Balay         if (!mask[tmp]) {
2305a30f8f8cSSatish Balay           mask[tmp] = 1;
23060222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23070222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2308a30f8f8cSSatish Balay         }
2309a30f8f8cSSatish Balay       }
2310a30f8f8cSSatish Balay       rowcount++;
2311a30f8f8cSSatish Balay     }
2312a30f8f8cSSatish Balay 
23130222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23140222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2315a30f8f8cSSatish Balay 
2316a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2317a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2318a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2319a30f8f8cSSatish Balay   }
2320a30f8f8cSSatish Balay 
2321a30f8f8cSSatish Balay   /* create our matrix */
232222191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
232322191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232422191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2325273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay   if (!rank) {
232887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2329a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2330a30f8f8cSSatish Balay     nz = procsnz[0];
2331a30f8f8cSSatish Balay     vals = buf;
2332a30f8f8cSSatish Balay     mycols = ibuf;
2333a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2334a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2336a30f8f8cSSatish Balay 
2337a30f8f8cSSatish Balay     /* insert into matrix */
2338a30f8f8cSSatish Balay     jj      = rstart*bs;
2339a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23407e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay       mycols += locrowlens[i];
2342a30f8f8cSSatish Balay       vals   += locrowlens[i];
2343a30f8f8cSSatish Balay       jj++;
2344a30f8f8cSSatish Balay     }
23457e06b45fSHong Zhang 
2346a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2347a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2348a30f8f8cSSatish Balay       nz   = procsnz[i];
2349a30f8f8cSSatish Balay       vals = buf;
2350a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2351a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2352a30f8f8cSSatish Balay     }
2353a30f8f8cSSatish Balay     /* the last proc */
2354a30f8f8cSSatish Balay     if (size != 1){
2355a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2356a30f8f8cSSatish Balay       vals = buf;
2357a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2359a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2360a30f8f8cSSatish Balay     }
2361a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23627e06b45fSHong Zhang 
2363a30f8f8cSSatish Balay   } else {
2364a30f8f8cSSatish Balay     /* receive numeric values */
236587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay 
2367a30f8f8cSSatish Balay     /* receive message of values*/
2368a30f8f8cSSatish Balay     vals   = buf;
2369a30f8f8cSSatish Balay     mycols = ibuf;
2370a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2373a30f8f8cSSatish Balay 
2374a30f8f8cSSatish Balay     /* insert into matrix */
2375a30f8f8cSSatish Balay     jj      = rstart*bs;
2376a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2377a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2378a30f8f8cSSatish Balay       mycols += locrowlens[i];
2379a30f8f8cSSatish Balay       vals   += locrowlens[i];
2380a30f8f8cSSatish Balay       jj++;
2381a30f8f8cSSatish Balay     }
2382a30f8f8cSSatish Balay   }
23837e06b45fSHong Zhang 
2384a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2385a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2387a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2389a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2390a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2391a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239222191285SKris Buschelman   *newmat = A;
2393a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2394a30f8f8cSSatish Balay }
2395a30f8f8cSSatish Balay 
23964a2ae208SSatish Balay #undef __FUNCT__
23974a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2398a30f8f8cSSatish Balay /*@
2399a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2400a30f8f8cSSatish Balay 
2401a30f8f8cSSatish Balay    Input Parameters:
2402a30f8f8cSSatish Balay .  mat  - the matrix
2403a30f8f8cSSatish Balay .  fact - factor
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay    Collective on Mat
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay    Level: advanced
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay   Notes:
2410a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2413a30f8f8cSSatish Balay 
2414a30f8f8cSSatish Balay .seealso: MatSetOption()
2415a30f8f8cSSatish Balay @*/
2416dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2417a30f8f8cSSatish Balay {
2418a30f8f8cSSatish Balay   PetscFunctionBegin;
241929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
242096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2421a30f8f8cSSatish Balay }
242224d5174aSHong Zhang 
24234a2ae208SSatish Balay #undef __FUNCT__
24244a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2425dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
242624d5174aSHong Zhang {
242724d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2428f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2429ca54ac64SHong Zhang   PetscReal    atmp;
243087828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2431dfbe8321SBarry Smith   PetscErrorCode ierr;
2432dfbe8321SBarry Smith   int i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2433154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
243487828ca2SBarry Smith   PetscScalar  *va;
24358a1c53f2SBarry Smith   MatScalar    *ba;
2436f4c0e9e4SHong Zhang   MPI_Status   stat;
243724d5174aSHong Zhang 
243824d5174aSHong Zhang   PetscFunctionBegin;
2439d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24401ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2441f4c0e9e4SHong Zhang 
244256faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
244356faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2444f4c0e9e4SHong Zhang 
2445f4c0e9e4SHong Zhang   bs   = a->bs;
2446f4c0e9e4SHong Zhang   mbs  = a->mbs;
2447f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2448f4c0e9e4SHong Zhang   ba   = b->a;
2449f4c0e9e4SHong Zhang   bi   = b->i;
2450f4c0e9e4SHong Zhang   bj   = b->j;
2451ca54ac64SHong Zhang   /*
245256faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
245356faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
2454ca54ac64SHong Zhang   */
2455f4c0e9e4SHong Zhang 
2456f4c0e9e4SHong Zhang   /* find ownerships */
2457f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2458f4c0e9e4SHong Zhang   /*
245904d41228SHong Zhang   if (!rank){
246004d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2461f4c0e9e4SHong Zhang   }
2462f4c0e9e4SHong Zhang   */
2463f4c0e9e4SHong Zhang 
2464f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
246582502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2466ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2467f4c0e9e4SHong Zhang 
2468f4c0e9e4SHong Zhang   /* row_max for B */
2469b8475685SHong Zhang   if (rank != size-1){
2470f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2471f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2472f4c0e9e4SHong Zhang       brow  = bs*i;
2473f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2474f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2475f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2476ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
247704d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2478ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2479f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2480f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2481ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2482f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2483ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2484f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2485f4c0e9e4SHong Zhang           }
2486f4c0e9e4SHong Zhang         }
2487f4c0e9e4SHong Zhang         bj++;
2488f4c0e9e4SHong Zhang       }
2489f4c0e9e4SHong Zhang     }
249004d41228SHong Zhang     /*
249104d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
249204d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
249304d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
249404d41228SHong Zhang       */
2495f4c0e9e4SHong Zhang 
2496f4c0e9e4SHong Zhang     /* send values to its owners */
2497f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2498f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2499ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
250056faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2501ca54ac64SHong Zhang       /*
250256faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
250356faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2504ca54ac64SHong Zhang       */
2505ca54ac64SHong Zhang     }
2506f4c0e9e4SHong Zhang   }
2507f4c0e9e4SHong Zhang 
2508f4c0e9e4SHong Zhang   /* receive values */
2509ca54ac64SHong Zhang   if (rank){
2510f4c0e9e4SHong Zhang     rvalues = work;
2511ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2512f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
251356faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2514f4c0e9e4SHong Zhang       /* process values */
2515f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2516ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2517f4c0e9e4SHong Zhang       }
2518ca54ac64SHong Zhang       /*
251956faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
252056faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2521ca54ac64SHong Zhang       */
2522f4c0e9e4SHong Zhang     }
2523ca54ac64SHong Zhang   }
2524f4c0e9e4SHong Zhang 
25251ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2526ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
252724d5174aSHong Zhang   PetscFunctionReturn(0);
252824d5174aSHong Zhang }
25292798e883SHong Zhang 
25302798e883SHong Zhang #undef __FUNCT__
25312798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2532dfbe8321SBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
25332798e883SHong Zhang {
25342798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2535dfbe8321SBarry Smith   PetscErrorCode ierr;
2536dfbe8321SBarry Smith   int mbs=mat->mbs,bs=mat->bs;
2537ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2538ffe4fb16SHong Zhang   Vec            bb1;
2539ffe4fb16SHong Zhang 
2540ffe4fb16SHong Zhang   PetscFunctionBegin;
2541ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2542ffe4fb16SHong Zhang   if (bs > 1)
2543ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2544ffe4fb16SHong Zhang 
2545ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2546ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2547ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2548ffe4fb16SHong Zhang       its--;
2549ffe4fb16SHong Zhang     }
2550ffe4fb16SHong Zhang 
2551ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2552ffe4fb16SHong Zhang     while (its--){
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2555ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang 
2557ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25581ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25591ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2560ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25611ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2562ffe4fb16SHong Zhang 
2563ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2564ffe4fb16SHong Zhang 
2565ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25661ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25671ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2568ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25691ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2570ffe4fb16SHong Zhang 
2571ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2572ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2573ffe4fb16SHong Zhang 
2574ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25751ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25761ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2577ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2578ffe4fb16SHong Zhang 
2579ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2580ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2581ffe4fb16SHong Zhang 
2582ffe4fb16SHong Zhang       /* local diagonal sweep */
2583ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2584ffe4fb16SHong Zhang     }
2585ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2586ffe4fb16SHong Zhang   } else {
2587ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2588ffe4fb16SHong Zhang   }
2589ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2590ffe4fb16SHong Zhang }
2591ffe4fb16SHong Zhang 
2592ffe4fb16SHong Zhang #undef __FUNCT__
2593ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2594dfbe8321SBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2595ffe4fb16SHong Zhang {
2596ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2597dfbe8321SBarry Smith   PetscErrorCode ierr;
2598d05c616dSSatish Balay   PetscScalar    mone=-1.0;
25992798e883SHong Zhang   Vec            lvec1,bb1;
26002798e883SHong Zhang 
26012798e883SHong Zhang   PetscFunctionBegin;
260291723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
26032798e883SHong Zhang   if (mat->bs > 1)
26042798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26052798e883SHong Zhang 
2606c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26072798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2608bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26092798e883SHong Zhang       its--;
26102798e883SHong Zhang     }
26112798e883SHong Zhang 
26122798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26132798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26142798e883SHong Zhang     while (its--){
26152798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
26162798e883SHong Zhang 
26172798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26182798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
26192798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
26202798e883SHong Zhang 
26212798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
26222798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
26232798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26242798e883SHong Zhang 
26252798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
26262798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
26272798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26282798e883SHong Zhang 
26292798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26302798e883SHong Zhang 
2631c14dc6b6SHong Zhang       /* diagonal sweep */
2632bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26332798e883SHong Zhang     }
26342798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26352798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2636c14dc6b6SHong Zhang   } else {
2637c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2638c14dc6b6SHong Zhang   }
26392798e883SHong Zhang   PetscFunctionReturn(0);
26402798e883SHong Zhang }
26412798e883SHong Zhang 
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