1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,int,IS[],int); 10dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 11dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 12dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode); 13dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 14dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 15dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 16dfbe8321SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 31dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 32dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 33dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 34dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 35dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 104a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 107a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 110a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 112a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 118a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 120a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 136b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 177a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 180a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 183a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 186a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 188a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 194a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 196a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 212b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 234dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 238dfbe8321SBarry Smith int i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 258dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 262dfbe8321SBarry Smith int i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay 2794a2ae208SSatish Balay #undef __FUNCT__ 2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 281dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 282a30f8f8cSSatish Balay { 283a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 284dfbe8321SBarry Smith PetscErrorCode ierr; 285dfbe8321SBarry Smith int i,N = m*n; 286a30f8f8cSSatish Balay MatScalar *vsingle; 287a30f8f8cSSatish Balay 288a30f8f8cSSatish Balay PetscFunctionBegin; 28929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 2904d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay 2934a2ae208SSatish Balay #undef __FUNCT__ 2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 295dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 296a30f8f8cSSatish Balay { 297a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 298dfbe8321SBarry Smith PetscErrorCode ierr; 299dfbe8321SBarry Smith int i,N = m*n*b->bs2; 300a30f8f8cSSatish Balay MatScalar *vsingle; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay PetscFunctionBegin; 30329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3044d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay #endif 307a30f8f8cSSatish Balay 308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 309a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 310a30f8f8cSSatish Balay */ 3114a2ae208SSatish Balay #undef __FUNCT__ 312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 313dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 314a30f8f8cSSatish Balay { 315a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 316a30f8f8cSSatish Balay MatScalar value; 317b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 318dfbe8321SBarry Smith PetscErrorCode ierr; 319dfbe8321SBarry Smith int i,j,row,col; 320b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 321a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 322a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 323a30f8f8cSSatish Balay 324a30f8f8cSSatish Balay /* Some Variables required in the macro */ 325a30f8f8cSSatish Balay Mat A = baij->A; 326a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 327a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 328a30f8f8cSSatish Balay MatScalar *aa=a->a; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay Mat B = baij->B; 331a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 332a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 333a30f8f8cSSatish Balay MatScalar *ba=b->a; 334a30f8f8cSSatish Balay 335a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 336a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 337a30f8f8cSSatish Balay MatScalar *ap,*bap; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay /* for stash */ 340f65c83cfSHong Zhang int n_loc, *in_loc=0; 341f65c83cfSHong Zhang MatScalar *v_loc=0; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay PetscFunctionBegin; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay if(!baij->donotstash){ 34682502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 34782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 348a30f8f8cSSatish Balay } 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay for (i=0; i<m; i++) { 351a30f8f8cSSatish Balay if (im[i] < 0) continue; 352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 353590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 354a30f8f8cSSatish Balay #endif 355a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 356a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 357a30f8f8cSSatish Balay for (j=0; j<n; j++) { 358f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 359a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 360a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 361a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 362a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 368590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 369a30f8f8cSSatish Balay #endif 370a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 371a30f8f8cSSatish Balay if (mat->was_assembled) { 372a30f8f8cSSatish Balay if (!baij->colmap) { 373653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 374a30f8f8cSSatish Balay } 375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 376a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37771730473SSatish Balay col = col - 1; 378a30f8f8cSSatish Balay #else 37971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 380a30f8f8cSSatish Balay #endif 381a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 382a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 383a30f8f8cSSatish Balay col = in[j]; 384a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 385a30f8f8cSSatish Balay B = baij->B; 386a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 387a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 388a30f8f8cSSatish Balay ba=b->a; 38971730473SSatish Balay } else col += in[j]%bs; 390a30f8f8cSSatish Balay } else col = in[j]; 391a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 392a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 393a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } else { /* off processor entry */ 397a30f8f8cSSatish Balay if (!baij->donotstash) { 398a30f8f8cSSatish Balay n_loc = 0; 399a30f8f8cSSatish Balay for (j=0; j<n; j++){ 400f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 401a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 402a30f8f8cSSatish Balay if (roworiented) { 403a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 404a30f8f8cSSatish Balay } else { 405a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay n_loc++; 408a30f8f8cSSatish Balay } 409a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 410a30f8f8cSSatish Balay } 411a30f8f8cSSatish Balay } 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay if(!baij->donotstash){ 415a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 423dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 424a30f8f8cSSatish Balay { 4250880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 426f15d580aSBarry Smith const MatScalar *value; 427f15d580aSBarry Smith MatScalar *barray=baij->barray; 4280880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 429dfbe8321SBarry Smith PetscErrorCode ierr; 430dfbe8321SBarry Smith int i,j,ii,jj,row,col,rstart=baij->rstart; 4310880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4320880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4330880e062SHong Zhang 434a30f8f8cSSatish Balay PetscFunctionBegin; 4350880e062SHong Zhang if(!barray) { 4360880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4370880e062SHong Zhang baij->barray = barray; 4380880e062SHong Zhang } 4390880e062SHong Zhang 4400880e062SHong Zhang if (roworiented) { 4410880e062SHong Zhang stepval = (n-1)*bs; 4420880e062SHong Zhang } else { 4430880e062SHong Zhang stepval = (m-1)*bs; 4440880e062SHong Zhang } 4450880e062SHong Zhang for (i=0; i<m; i++) { 4460880e062SHong Zhang if (im[i] < 0) continue; 4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 448590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4490880e062SHong Zhang #endif 4500880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4510880e062SHong Zhang row = im[i] - rstart; 4520880e062SHong Zhang for (j=0; j<n; j++) { 4530880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4540880e062SHong Zhang if ((roworiented) && (n == 1)) { 455f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4560880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 457f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4580880e062SHong Zhang } else { /* Here a copy is required */ 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4650880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4660880e062SHong Zhang *barray++ = *value++; 4670880e062SHong Zhang } 4680880e062SHong Zhang } 4690880e062SHong Zhang barray -=bs2; 4700880e062SHong Zhang } 4710880e062SHong Zhang 4720880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4730880e062SHong Zhang col = in[j] - cstart; 4740880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4750880e062SHong Zhang } 4760880e062SHong Zhang else if (in[j] < 0) continue; 4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 478590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4790880e062SHong Zhang #endif 4800880e062SHong Zhang else { 4810880e062SHong Zhang if (mat->was_assembled) { 4820880e062SHong Zhang if (!baij->colmap) { 483653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4840880e062SHong Zhang } 4850880e062SHong Zhang 4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4880880e062SHong Zhang { int data; 4890880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4900880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4910880e062SHong Zhang } 4920880e062SHong Zhang #else 4930880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4940880e062SHong Zhang #endif 4950880e062SHong Zhang #endif 4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4970880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4980880e062SHong Zhang col = (col - 1)/bs; 4990880e062SHong Zhang #else 5000880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5010880e062SHong Zhang #endif 5020880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5030880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5040880e062SHong Zhang col = in[j]; 5050880e062SHong Zhang } 5060880e062SHong Zhang } 5070880e062SHong Zhang else col = in[j]; 508e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5090880e062SHong Zhang } 5100880e062SHong Zhang } 5110880e062SHong Zhang } else { 5120880e062SHong Zhang if (!baij->donotstash) { 5130880e062SHong Zhang if (roworiented) { 5140880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5150880e062SHong Zhang } else { 5160880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5170880e062SHong Zhang } 5180880e062SHong Zhang } 5190880e062SHong Zhang } 5200880e062SHong Zhang } 5210880e062SHong Zhang PetscFunctionReturn(0); 522a30f8f8cSSatish Balay } 523a30f8f8cSSatish Balay 524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 525a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 526a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 527a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5284a2ae208SSatish Balay #undef __FUNCT__ 5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 530dfbe8321SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 531a30f8f8cSSatish Balay { 532a30f8f8cSSatish Balay PetscFunctionBegin; 53329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 53496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay 5374a2ae208SSatish Balay #undef __FUNCT__ 5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 539dfbe8321SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 540a30f8f8cSSatish Balay { 541a30f8f8cSSatish Balay PetscFunctionBegin; 54229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 54396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 548dfbe8321SBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 551*6849ba73SBarry Smith PetscErrorCode ierr; 552*6849ba73SBarry Smith int bs=baij->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 553a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 558590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 563590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data --; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay } else { 58529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay PetscFunctionReturn(0); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay 5914a2ae208SSatish Balay #undef __FUNCT__ 5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 594a30f8f8cSSatish Balay { 595a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 596bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 597bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 598dfbe8321SBarry Smith PetscErrorCode ierr; 599a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 600a30f8f8cSSatish Balay 601a30f8f8cSSatish Balay PetscFunctionBegin; 602a30f8f8cSSatish Balay if (baij->size == 1) { 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 604a30f8f8cSSatish Balay } else { 605a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 606f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 607a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 608a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 609a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 610a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 611a30f8f8cSSatish Balay /* 61256faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 61356faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 614a30f8f8cSSatish Balay */ 615d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 616a30f8f8cSSatish Balay /* 61756faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 61856faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 619a30f8f8cSSatish Balay 620a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 621a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 622a30f8f8cSSatish Balay } else { 62329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 624a30f8f8cSSatish Balay } 625a30f8f8cSSatish Balay } 626a30f8f8cSSatish Balay PetscFunctionReturn(0); 627a30f8f8cSSatish Balay } 628a30f8f8cSSatish Balay 629a30f8f8cSSatish Balay /* 630a30f8f8cSSatish Balay Creates the hash table, and sets the table 631a30f8f8cSSatish Balay This table is created only once. 632a30f8f8cSSatish Balay If new entried need to be added to the matrix 633a30f8f8cSSatish Balay then the hash table has to be destroyed and 634a30f8f8cSSatish Balay recreated. 635a30f8f8cSSatish Balay */ 6364a2ae208SSatish Balay #undef __FUNCT__ 6374a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 638dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 639a30f8f8cSSatish Balay { 640a30f8f8cSSatish Balay PetscFunctionBegin; 64129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 64296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 643a30f8f8cSSatish Balay } 644a30f8f8cSSatish Balay 6454a2ae208SSatish Balay #undef __FUNCT__ 6464a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 647dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 648a30f8f8cSSatish Balay { 649a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 650dfbe8321SBarry Smith PetscErrorCode ierr; 651dfbe8321SBarry Smith int nstash,reallocs; 652a30f8f8cSSatish Balay InsertMode addv; 653a30f8f8cSSatish Balay 654a30f8f8cSSatish Balay PetscFunctionBegin; 655a30f8f8cSSatish Balay if (baij->donotstash) { 656a30f8f8cSSatish Balay PetscFunctionReturn(0); 657a30f8f8cSSatish Balay } 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 660a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 661a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 66229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 663a30f8f8cSSatish Balay } 664a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 665a30f8f8cSSatish Balay 666a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 667a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 668a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 669b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 670a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 671b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 672a30f8f8cSSatish Balay PetscFunctionReturn(0); 673a30f8f8cSSatish Balay } 674a30f8f8cSSatish Balay 6754a2ae208SSatish Balay #undef __FUNCT__ 6764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 677dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 678a30f8f8cSSatish Balay { 679a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 680a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 681a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 682*6849ba73SBarry Smith PetscErrorCode ierr; 683*6849ba73SBarry Smith int i,j,rstart,ncols,n,flg,bs2=baij->bs2; 684a30f8f8cSSatish Balay int *row,*col,other_disassembled; 685a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 686a30f8f8cSSatish Balay MatScalar *val; 687a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 688a30f8f8cSSatish Balay 689a30f8f8cSSatish Balay PetscFunctionBegin; 690a30f8f8cSSatish Balay 691a30f8f8cSSatish Balay if (!baij->donotstash) { 692a30f8f8cSSatish Balay while (1) { 693a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 694a30f8f8cSSatish Balay /* 69556faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 69656faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 697a30f8f8cSSatish Balay */ 698a30f8f8cSSatish Balay if (!flg) break; 699a30f8f8cSSatish Balay 700a30f8f8cSSatish Balay for (i=0; i<n;) { 701a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 702a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 703a30f8f8cSSatish Balay if (j < n) ncols = j-i; 704a30f8f8cSSatish Balay else ncols = n-i; 705a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 706a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 707a30f8f8cSSatish Balay i = j; 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 711a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 712a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 713a30f8f8cSSatish Balay restore the original flags */ 714a30f8f8cSSatish Balay r1 = baij->roworiented; 715a30f8f8cSSatish Balay r2 = a->roworiented; 716a30f8f8cSSatish Balay r3 = b->roworiented; 717a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 718a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 719a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 720a30f8f8cSSatish Balay while (1) { 721a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 722a30f8f8cSSatish Balay if (!flg) break; 723a30f8f8cSSatish Balay 724a30f8f8cSSatish Balay for (i=0; i<n;) { 725a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 726a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 727a30f8f8cSSatish Balay if (j < n) ncols = j-i; 728a30f8f8cSSatish Balay else ncols = n-i; 729a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 730a30f8f8cSSatish Balay i = j; 731a30f8f8cSSatish Balay } 732a30f8f8cSSatish Balay } 733a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 734a30f8f8cSSatish Balay baij->roworiented = r1; 735a30f8f8cSSatish Balay a->roworiented = r2; 736a30f8f8cSSatish Balay b->roworiented = r3; 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay 739a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 740a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 741a30f8f8cSSatish Balay 742a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 743a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 744a30f8f8cSSatish Balay /* 745a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 746a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 747a30f8f8cSSatish Balay */ 748a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 749a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 750a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 751c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 75640781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 759a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 760a30f8f8cSSatish Balay 761a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 762a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 763f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 764a30f8f8cSSatish Balay baij->ht_total_ct = 0; 765a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay #endif 768a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 769c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 770a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 771a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay 774a30f8f8cSSatish Balay if (baij->rowvalues) { 775a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 776a30f8f8cSSatish Balay baij->rowvalues = 0; 777a30f8f8cSSatish Balay } 7785222a1afSHong Zhang 779a30f8f8cSSatish Balay PetscFunctionReturn(0); 780a30f8f8cSSatish Balay } 781a30f8f8cSSatish Balay 7824a2ae208SSatish Balay #undef __FUNCT__ 7834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 784*6849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 785a30f8f8cSSatish Balay { 786a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 787dfbe8321SBarry Smith PetscErrorCode ierr; 788dfbe8321SBarry Smith int bs = baij->bs,size = baij->size,rank = baij->rank; 78932077d6dSBarry Smith PetscTruth iascii,isdraw; 790b0a32e0cSBarry Smith PetscViewer sviewer; 791f3ef73ceSBarry Smith PetscViewerFormat format; 792a30f8f8cSSatish Balay 793a30f8f8cSSatish Balay PetscFunctionBegin; 79432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 795fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 79632077d6dSBarry Smith if (iascii) { 797b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 798456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 799a30f8f8cSSatish Balay MatInfo info; 800a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 801a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 802b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 803b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 804a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 805a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 806b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 807a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 808b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 809b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 810a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 811a30f8f8cSSatish Balay PetscFunctionReturn(0); 812fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 813b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 814a30f8f8cSSatish Balay PetscFunctionReturn(0); 815a30f8f8cSSatish Balay } 816a30f8f8cSSatish Balay } 817a30f8f8cSSatish Balay 818a30f8f8cSSatish Balay if (isdraw) { 819b0a32e0cSBarry Smith PetscDraw draw; 820a30f8f8cSSatish Balay PetscTruth isnull; 821b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 822b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 823a30f8f8cSSatish Balay } 824a30f8f8cSSatish Balay 825a30f8f8cSSatish Balay if (size == 1) { 826e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 827a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 828a30f8f8cSSatish Balay } else { 829a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 830a30f8f8cSSatish Balay Mat A; 83165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 83265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 833b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 834a30f8f8cSSatish Balay MatScalar *a; 835a30f8f8cSSatish Balay 836f204ca49SKris Buschelman /* Should this be the same type as mat? */ 837a30f8f8cSSatish Balay if (!rank) { 838f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 839a30f8f8cSSatish Balay } else { 840f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 841a30f8f8cSSatish Balay } 842f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 843f204ca49SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 844b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 845a30f8f8cSSatish Balay 846a30f8f8cSSatish Balay /* copy over the A part */ 84765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 848a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 84982502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 850a30f8f8cSSatish Balay 851a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 852a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 853a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 854a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 855a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 856a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 857a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 858a30f8f8cSSatish Balay col++; a += bs; 859a30f8f8cSSatish Balay } 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay /* copy over the B part */ 86365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 86465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 865a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 866a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 867a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 868a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 869a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 870a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 871a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 872a30f8f8cSSatish Balay col++; a += bs; 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay } 875a30f8f8cSSatish Balay } 876a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 877a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 878a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 879a30f8f8cSSatish Balay /* 880a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 881b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 882a30f8f8cSSatish Balay */ 883b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 88465d70643SHong Zhang if (!rank) { 885e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 886a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 887a30f8f8cSSatish Balay } 888b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 889a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay PetscFunctionReturn(0); 892a30f8f8cSSatish Balay } 893a30f8f8cSSatish Balay 8944a2ae208SSatish Balay #undef __FUNCT__ 8954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 896dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 897a30f8f8cSSatish Balay { 898dfbe8321SBarry Smith PetscErrorCode ierr; 89932077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 900a30f8f8cSSatish Balay 901a30f8f8cSSatish Balay PetscFunctionBegin; 90232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 903fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 904b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 905fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 90632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 907a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 908a30f8f8cSSatish Balay } else { 90929bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 910a30f8f8cSSatish Balay } 911a30f8f8cSSatish Balay PetscFunctionReturn(0); 912a30f8f8cSSatish Balay } 913a30f8f8cSSatish Balay 9144a2ae208SSatish Balay #undef __FUNCT__ 9154a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 916dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 917a30f8f8cSSatish Balay { 918a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 919dfbe8321SBarry Smith PetscErrorCode ierr; 920a30f8f8cSSatish Balay 921a30f8f8cSSatish Balay PetscFunctionBegin; 922a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 923b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 924a30f8f8cSSatish Balay #endif 925a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 926a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 927a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 928a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 929a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 930a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 931a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 932a30f8f8cSSatish Balay #else 933a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 934a30f8f8cSSatish Balay #endif 935a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 937a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 93840781036SHong Zhang if (baij->slvec0) { 93940781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 94040781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 94140781036SHong Zhang } 94240781036SHong Zhang if (baij->slvec1) { 94340781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 94440781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 94540781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 94640781036SHong Zhang } 94740781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 948a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 949a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 950a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 951a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 952a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 953a30f8f8cSSatish Balay #endif 954a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 955a30f8f8cSSatish Balay PetscFunctionReturn(0); 956a30f8f8cSSatish Balay } 957a30f8f8cSSatish Balay 9584a2ae208SSatish Balay #undef __FUNCT__ 959a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 960dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 961a9d4b620SHong Zhang { 962a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 963dfbe8321SBarry Smith PetscErrorCode ierr; 964dfbe8321SBarry Smith int nt,mbs=a->mbs,bs=a->bs; 965a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 966a9d4b620SHong Zhang 967a9d4b620SHong Zhang PetscFunctionBegin; 968a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 969a9d4b620SHong Zhang if (nt != A->n) { 970a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 971a9d4b620SHong Zhang } 972a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 973a9d4b620SHong Zhang if (nt != A->m) { 974a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 975a9d4b620SHong Zhang } 976a9d4b620SHong Zhang 977a9d4b620SHong Zhang /* diagonal part */ 978a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 979a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 980a9d4b620SHong Zhang 981a9d4b620SHong Zhang /* subdiagonal part */ 982a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 983a9d4b620SHong Zhang 984a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9851ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9861ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 987a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9881ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 989a9d4b620SHong Zhang 990a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9911ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 992a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 993a9d4b620SHong Zhang 994a9d4b620SHong Zhang /* supperdiagonal part */ 995a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 996a9d4b620SHong Zhang 997a9d4b620SHong Zhang PetscFunctionReturn(0); 998a9d4b620SHong Zhang } 999a9d4b620SHong Zhang 1000a9d4b620SHong Zhang #undef __FUNCT__ 100140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1002dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1003a30f8f8cSSatish Balay { 1004a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1005dfbe8321SBarry Smith PetscErrorCode ierr; 1006dfbe8321SBarry Smith int nt; 1007a30f8f8cSSatish Balay 1008a30f8f8cSSatish Balay PetscFunctionBegin; 1009a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1010b5df2d14SHong Zhang if (nt != A->n) { 101129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1012a30f8f8cSSatish Balay } 1013a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1014b5df2d14SHong Zhang if (nt != A->m) { 101529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1016a30f8f8cSSatish Balay } 101765d70643SHong Zhang 1018b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1019b941877fSHong Zhang /* do diagonal part */ 1020b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1021b941877fSHong Zhang /* do supperdiagonal part */ 1022b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1023b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1024b941877fSHong Zhang /* do subdiagonal part */ 1025b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1026b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1027b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 102865d70643SHong Zhang 1029a30f8f8cSSatish Balay PetscFunctionReturn(0); 1030a30f8f8cSSatish Balay } 1031a30f8f8cSSatish Balay 10324a2ae208SSatish Balay #undef __FUNCT__ 10334a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1034dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1035a30f8f8cSSatish Balay { 1036de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1037dfbe8321SBarry Smith PetscErrorCode ierr; 1038dfbe8321SBarry Smith int mbs=a->mbs,bs=a->bs; 1039a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1040a9d4b620SHong Zhang 1041a9d4b620SHong Zhang PetscFunctionBegin; 1042a9d4b620SHong Zhang /* 104356faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 104456faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1045a9d4b620SHong Zhang */ 1046a9d4b620SHong Zhang /* diagonal part */ 1047a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1048a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1049a9d4b620SHong Zhang 1050a9d4b620SHong Zhang /* subdiagonal part */ 1051a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1052a9d4b620SHong Zhang 1053a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10541ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10551ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1056a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10571ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1058a9d4b620SHong Zhang 1059a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10601ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1061a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1062a9d4b620SHong Zhang 1063a9d4b620SHong Zhang /* supperdiagonal part */ 1064a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1065a9d4b620SHong Zhang 1066a9d4b620SHong Zhang PetscFunctionReturn(0); 1067a9d4b620SHong Zhang } 1068a9d4b620SHong Zhang 1069a9d4b620SHong Zhang #undef __FUNCT__ 1070a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1071dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1072a9d4b620SHong Zhang { 1073a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1074dfbe8321SBarry Smith PetscErrorCode ierr; 1075a30f8f8cSSatish Balay 1076a30f8f8cSSatish Balay PetscFunctionBegin; 1077b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1078b941877fSHong Zhang /* do diagonal part */ 1079b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1080b941877fSHong Zhang /* do supperdiagonal part */ 1081b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1082de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1083de8b6608SHong Zhang 1084b941877fSHong Zhang /* do subdiagonal part */ 1085a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1086a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1087a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1088aa482183SHong Zhang 1089a30f8f8cSSatish Balay PetscFunctionReturn(0); 1090a30f8f8cSSatish Balay } 1091a30f8f8cSSatish Balay 10924a2ae208SSatish Balay #undef __FUNCT__ 10934a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1094dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1095a30f8f8cSSatish Balay { 1096dfbe8321SBarry Smith PetscErrorCode ierr; 10975a7c0312SHong Zhang 1098a30f8f8cSSatish Balay PetscFunctionBegin; 10995a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 11005a7c0312SHong Zhang PetscFunctionReturn(0); 1101a30f8f8cSSatish Balay } 1102a30f8f8cSSatish Balay 11034a2ae208SSatish Balay #undef __FUNCT__ 11044a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1105dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1106a30f8f8cSSatish Balay { 1107dfbe8321SBarry Smith PetscErrorCode ierr; 11085a7c0312SHong Zhang 1109a30f8f8cSSatish Balay PetscFunctionBegin; 11105a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 11115a7c0312SHong Zhang PetscFunctionReturn(0); 1112a30f8f8cSSatish Balay } 1113a30f8f8cSSatish Balay 1114a30f8f8cSSatish Balay /* 1115a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1116a30f8f8cSSatish Balay diagonal block 1117a30f8f8cSSatish Balay */ 11184a2ae208SSatish Balay #undef __FUNCT__ 11194a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1120dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1121a30f8f8cSSatish Balay { 1122a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1123dfbe8321SBarry Smith PetscErrorCode ierr; 1124a30f8f8cSSatish Balay 1125a30f8f8cSSatish Balay PetscFunctionBegin; 112629bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1127a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1128a30f8f8cSSatish Balay PetscFunctionReturn(0); 1129a30f8f8cSSatish Balay } 1130a30f8f8cSSatish Balay 11314a2ae208SSatish Balay #undef __FUNCT__ 11324a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1133dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1134a30f8f8cSSatish Balay { 1135a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1136dfbe8321SBarry Smith PetscErrorCode ierr; 1137a30f8f8cSSatish Balay 1138a30f8f8cSSatish Balay PetscFunctionBegin; 1139a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1140a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1141a30f8f8cSSatish Balay PetscFunctionReturn(0); 1142a30f8f8cSSatish Balay } 1143a30f8f8cSSatish Balay 11444a2ae208SSatish Balay #undef __FUNCT__ 11454a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 1146dfbe8321SBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1147a30f8f8cSSatish Balay { 1148a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 114987828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1150*6849ba73SBarry Smith PetscErrorCode ierr; 1151*6849ba73SBarry Smith int bs = mat->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1152a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1153a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1154a30f8f8cSSatish Balay 1155a30f8f8cSSatish Balay PetscFunctionBegin; 115629bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1157a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1158a30f8f8cSSatish Balay 1159a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1160a30f8f8cSSatish Balay /* 1161a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1162a30f8f8cSSatish Balay */ 1163a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1164a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1165a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1166a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1167a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1168a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1169a30f8f8cSSatish Balay } 117087828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1171a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1172a30f8f8cSSatish Balay } 1173a30f8f8cSSatish Balay 117429bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1175a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1176a30f8f8cSSatish Balay 1177a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1178a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1179a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1180a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1181a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1182a30f8f8cSSatish Balay nztot = nzA + nzB; 1183a30f8f8cSSatish Balay 1184a30f8f8cSSatish Balay cmap = mat->garray; 1185a30f8f8cSSatish Balay if (v || idx) { 1186a30f8f8cSSatish Balay if (nztot) { 1187a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1188a30f8f8cSSatish Balay int imark = -1; 1189a30f8f8cSSatish Balay if (v) { 1190a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1191a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1192a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1193a30f8f8cSSatish Balay else break; 1194a30f8f8cSSatish Balay } 1195a30f8f8cSSatish Balay imark = i; 1196a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1197a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1198a30f8f8cSSatish Balay } 1199a30f8f8cSSatish Balay if (idx) { 1200a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1201a30f8f8cSSatish Balay if (imark > -1) { 1202a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1203a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1204a30f8f8cSSatish Balay } 1205a30f8f8cSSatish Balay } else { 1206a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1207a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1208a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1209a30f8f8cSSatish Balay else break; 1210a30f8f8cSSatish Balay } 1211a30f8f8cSSatish Balay imark = i; 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1214a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1215a30f8f8cSSatish Balay } 1216a30f8f8cSSatish Balay } else { 1217a30f8f8cSSatish Balay if (idx) *idx = 0; 1218a30f8f8cSSatish Balay if (v) *v = 0; 1219a30f8f8cSSatish Balay } 1220a30f8f8cSSatish Balay } 1221a30f8f8cSSatish Balay *nz = nztot; 1222a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1223a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1224a30f8f8cSSatish Balay PetscFunctionReturn(0); 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay 12274a2ae208SSatish Balay #undef __FUNCT__ 12284a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 1229dfbe8321SBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1230a30f8f8cSSatish Balay { 1231a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1232a30f8f8cSSatish Balay 1233a30f8f8cSSatish Balay PetscFunctionBegin; 1234a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 123529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1236a30f8f8cSSatish Balay } 1237a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1238a30f8f8cSSatish Balay PetscFunctionReturn(0); 1239a30f8f8cSSatish Balay } 1240a30f8f8cSSatish Balay 12414a2ae208SSatish Balay #undef __FUNCT__ 12424a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1243dfbe8321SBarry Smith PetscErrorCode MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1244a30f8f8cSSatish Balay { 1245a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1246a30f8f8cSSatish Balay 1247a30f8f8cSSatish Balay PetscFunctionBegin; 1248a30f8f8cSSatish Balay *bs = baij->bs; 1249a30f8f8cSSatish Balay PetscFunctionReturn(0); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay 12524a2ae208SSatish Balay #undef __FUNCT__ 12534a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1254dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1255a30f8f8cSSatish Balay { 1256a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1257dfbe8321SBarry Smith PetscErrorCode ierr; 1258a30f8f8cSSatish Balay 1259a30f8f8cSSatish Balay PetscFunctionBegin; 1260a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1262a30f8f8cSSatish Balay PetscFunctionReturn(0); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 12654a2ae208SSatish Balay #undef __FUNCT__ 12664a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1267dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1268a30f8f8cSSatish Balay { 1269a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1270a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1271dfbe8321SBarry Smith PetscErrorCode ierr; 1272a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1273a30f8f8cSSatish Balay 1274a30f8f8cSSatish Balay PetscFunctionBegin; 1275f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1276a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1277a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1278a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1279a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1280a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1281a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1282a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1283a30f8f8cSSatish Balay info->nz_used = isend[0]; 1284a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1285a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1286a30f8f8cSSatish Balay info->memory = isend[3]; 1287a30f8f8cSSatish Balay info->mallocs = isend[4]; 1288a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1289d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1291a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1292a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1293a30f8f8cSSatish Balay info->memory = irecv[3]; 1294a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1295a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1296d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1297a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1298a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1299a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1300a30f8f8cSSatish Balay info->memory = irecv[3]; 1301a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1302a30f8f8cSSatish Balay } else { 130329bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1304a30f8f8cSSatish Balay } 1305f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1306f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1307f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1308f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1309a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1310a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1311a30f8f8cSSatish Balay info->factor_mallocs = 0; 1312a30f8f8cSSatish Balay PetscFunctionReturn(0); 1313a30f8f8cSSatish Balay } 1314a30f8f8cSSatish Balay 13154a2ae208SSatish Balay #undef __FUNCT__ 13164a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1317dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1318a30f8f8cSSatish Balay { 1319a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1320dfbe8321SBarry Smith PetscErrorCode ierr; 1321a30f8f8cSSatish Balay 1322a30f8f8cSSatish Balay PetscFunctionBegin; 1323e98b92d7SKris Buschelman switch (op) { 1324e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1325e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1326e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1327e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1328e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1329e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1330e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1331a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1332a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1333e98b92d7SKris Buschelman break; 1334e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1335a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1336a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1337a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1338e98b92d7SKris Buschelman break; 1339e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1340e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1341e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1342b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1343e98b92d7SKris Buschelman break; 1344e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1345a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1346a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1347a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1348e98b92d7SKris Buschelman break; 1349e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1350a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1351e98b92d7SKris Buschelman break; 1352e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 135329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1354e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1355a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1356e98b92d7SKris Buschelman break; 13579a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13589a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13599a4540c5SBarry Smith case MAT_HERMITIAN: 13609a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 136177e54ba9SKris Buschelman case MAT_SYMMETRIC: 136277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13639a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13649a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13659a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 136677e54ba9SKris Buschelman break; 1367e98b92d7SKris Buschelman default: 136829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1369a30f8f8cSSatish Balay } 1370a30f8f8cSSatish Balay PetscFunctionReturn(0); 1371a30f8f8cSSatish Balay } 1372a30f8f8cSSatish Balay 13734a2ae208SSatish Balay #undef __FUNCT__ 13748115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1375dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1376a30f8f8cSSatish Balay { 1377dfbe8321SBarry Smith PetscErrorCode ierr; 1378a30f8f8cSSatish Balay PetscFunctionBegin; 1379999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13808115998fSBarry Smith PetscFunctionReturn(0); 1381a30f8f8cSSatish Balay } 1382a30f8f8cSSatish Balay 13834a2ae208SSatish Balay #undef __FUNCT__ 13844a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1385dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1386a30f8f8cSSatish Balay { 1387a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1388a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1389dfbe8321SBarry Smith PetscErrorCode ierr; 1390dfbe8321SBarry Smith int s1,s2,s3; 1391a30f8f8cSSatish Balay 1392a30f8f8cSSatish Balay PetscFunctionBegin; 1393a30f8f8cSSatish Balay if (ll != rr) { 139429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1395a30f8f8cSSatish Balay } 1396a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1397a30f8f8cSSatish Balay if (rr) { 1398a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 139929bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1400a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1401a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1402a30f8f8cSSatish Balay /*} if (ll) { */ 1403a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 140429bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1405a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1406a30f8f8cSSatish Balay /* } */ 1407a30f8f8cSSatish Balay /* scale the diagonal block */ 1408a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1409a30f8f8cSSatish Balay 1410a30f8f8cSSatish Balay /* if (rr) { */ 1411a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1412a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1413a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1414a30f8f8cSSatish Balay } 1415a30f8f8cSSatish Balay 1416a30f8f8cSSatish Balay PetscFunctionReturn(0); 1417a30f8f8cSSatish Balay } 1418a30f8f8cSSatish Balay 14194a2ae208SSatish Balay #undef __FUNCT__ 14204a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1421dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1422a30f8f8cSSatish Balay { 1423a30f8f8cSSatish Balay PetscFunctionBegin; 1424c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1425a30f8f8cSSatish Balay } 1426a30f8f8cSSatish Balay 14274a2ae208SSatish Balay #undef __FUNCT__ 14284a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1429dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1430a30f8f8cSSatish Balay { 1431a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1432a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1433a30f8f8cSSatish Balay static int called = 0; 1434dfbe8321SBarry Smith PetscErrorCode ierr; 1435a30f8f8cSSatish Balay 1436a30f8f8cSSatish Balay PetscFunctionBegin; 1437a30f8f8cSSatish Balay if (!a->rank) { 1438a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1439a30f8f8cSSatish Balay } 1440a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1441a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1442a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1443a30f8f8cSSatish Balay PetscFunctionReturn(0); 1444a30f8f8cSSatish Balay } 1445a30f8f8cSSatish Balay 14464a2ae208SSatish Balay #undef __FUNCT__ 14474a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1448dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1449a30f8f8cSSatish Balay { 1450f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1451dfbe8321SBarry Smith PetscErrorCode ierr; 1452a30f8f8cSSatish Balay 1453a30f8f8cSSatish Balay PetscFunctionBegin; 1454a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1455a30f8f8cSSatish Balay PetscFunctionReturn(0); 1456a30f8f8cSSatish Balay } 1457a30f8f8cSSatish Balay 1458*6849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1459a30f8f8cSSatish Balay 14604a2ae208SSatish Balay #undef __FUNCT__ 14614a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1462dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1463a30f8f8cSSatish Balay { 1464a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1465a30f8f8cSSatish Balay Mat a,b,c,d; 1466a30f8f8cSSatish Balay PetscTruth flg; 1467dfbe8321SBarry Smith PetscErrorCode ierr; 1468a30f8f8cSSatish Balay 1469a30f8f8cSSatish Balay PetscFunctionBegin; 1470a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1471a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1472a30f8f8cSSatish Balay 1473a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1474a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1475a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1476a30f8f8cSSatish Balay } 1477a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1478a30f8f8cSSatish Balay PetscFunctionReturn(0); 1479a30f8f8cSSatish Balay } 1480a30f8f8cSSatish Balay 14814a2ae208SSatish Balay #undef __FUNCT__ 14824a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1483dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1484273d9f13SBarry Smith { 1485dfbe8321SBarry Smith PetscErrorCode ierr; 1486273d9f13SBarry Smith 1487273d9f13SBarry Smith PetscFunctionBegin; 1488273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1489273d9f13SBarry Smith PetscFunctionReturn(0); 1490273d9f13SBarry Smith } 1491a5e6ed63SBarry Smith 1492a5e6ed63SBarry Smith #undef __FUNCT__ 1493a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 1494dfbe8321SBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,int n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1495a5e6ed63SBarry Smith { 1496*6849ba73SBarry Smith PetscErrorCode ierr; 1497*6849ba73SBarry Smith int i; 1498a5e6ed63SBarry Smith PetscTruth flg; 1499a5e6ed63SBarry Smith 1500*6849ba73SBarry Smith PetscFunctionBegin; 1501a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1502a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1503a5e6ed63SBarry Smith if (!flg) { 1504a5e6ed63SBarry Smith SETERRQ(1,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1505a5e6ed63SBarry Smith } 1506a5e6ed63SBarry Smith } 1507a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1508a5e6ed63SBarry Smith PetscFunctionReturn(0); 1509a5e6ed63SBarry Smith } 1510a5e6ed63SBarry Smith 1511a5e6ed63SBarry Smith 1512a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1513a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1514a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1515a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1516a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1517a9d4b620SHong Zhang MatMult_MPISBAIJ, 151897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1519a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1520a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 152497304618SKris Buschelman /*10*/ 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 15272798e883SHong Zhang MatRelax_MPISBAIJ, 1528a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 152997304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1530a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1531a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1532a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1533a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 153497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1535a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1538a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 153997304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 154497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1545b5df2d14SHong Zhang 0, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay 0, 1548a30f8f8cSSatish Balay 0, 154997304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 1553a30f8f8cSSatish Balay 0, 155497304618SKris Buschelman /*40*/ 0, 1555a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1556d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1557a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1558a30f8f8cSSatish Balay 0, 155997304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1560a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1561a30f8f8cSSatish Balay 0, 1562a30f8f8cSSatish Balay 0, 1563a30f8f8cSSatish Balay 0, 156497304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay 0, 1567a30f8f8cSSatish Balay 0, 1568a30f8f8cSSatish Balay 0, 156997304618SKris Buschelman /*55*/ 0, 1570a30f8f8cSSatish Balay 0, 1571a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1572a30f8f8cSSatish Balay 0, 1573a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 157497304618SKris Buschelman /*60*/ 0, 1575a30f8f8cSSatish Balay 0, 1576a30f8f8cSSatish Balay 0, 15778a124369SBarry Smith MatGetPetscMaps_Petsc, 157824d5174aSHong Zhang 0, 157997304618SKris Buschelman /*65*/ 0, 158024d5174aSHong Zhang 0, 158124d5174aSHong Zhang 0, 158224d5174aSHong Zhang 0, 158324d5174aSHong Zhang 0, 158497304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 158524d5174aSHong Zhang 0, 158697304618SKris Buschelman 0, 158797304618SKris Buschelman 0, 158897304618SKris Buschelman 0, 158997304618SKris Buschelman /*75*/ 0, 159097304618SKris Buschelman 0, 159197304618SKris Buschelman 0, 159297304618SKris Buschelman 0, 159397304618SKris Buschelman 0, 159497304618SKris Buschelman /*80*/ 0, 159597304618SKris Buschelman 0, 159697304618SKris Buschelman 0, 159797304618SKris Buschelman 0, 159897304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ 159997304618SKris Buschelman }; 1600a30f8f8cSSatish Balay 1601a30f8f8cSSatish Balay 1602a30f8f8cSSatish Balay EXTERN_C_BEGIN 16034a2ae208SSatish Balay #undef __FUNCT__ 16044a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1605dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1606a30f8f8cSSatish Balay { 1607a30f8f8cSSatish Balay PetscFunctionBegin; 1608a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1609a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1610a30f8f8cSSatish Balay PetscFunctionReturn(0); 1611a30f8f8cSSatish Balay } 1612a30f8f8cSSatish Balay EXTERN_C_END 1613a30f8f8cSSatish Balay 1614273d9f13SBarry Smith EXTERN_C_BEGIN 16154a2ae208SSatish Balay #undef __FUNCT__ 1616a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1617dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1618a23d5eceSKris Buschelman { 1619a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1620dfbe8321SBarry Smith PetscErrorCode ierr; 1621dfbe8321SBarry Smith int i,mbs,Mbs; 1622a23d5eceSKris Buschelman 1623a23d5eceSKris Buschelman PetscFunctionBegin; 1624a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1625a23d5eceSKris Buschelman 1626a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1627a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1628a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1629a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1630a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1631a23d5eceSKris Buschelman if (d_nnz) { 1632a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1633a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1634a23d5eceSKris Buschelman } 1635a23d5eceSKris Buschelman } 1636a23d5eceSKris Buschelman if (o_nnz) { 1637a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1638a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1639a23d5eceSKris Buschelman } 1640a23d5eceSKris Buschelman } 1641a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1642a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1643a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1644a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1645a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1646a23d5eceSKris Buschelman 1647a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1648a23d5eceSKris Buschelman mbs = B->m/bs; 1649a23d5eceSKris Buschelman Mbs = B->M/bs; 1650a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1651a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1652a23d5eceSKris Buschelman } 1653a23d5eceSKris Buschelman 1654a23d5eceSKris Buschelman b->bs = bs; 1655a23d5eceSKris Buschelman b->bs2 = bs*bs; 1656a23d5eceSKris Buschelman b->mbs = mbs; 1657a23d5eceSKris Buschelman b->nbs = mbs; 1658a23d5eceSKris Buschelman b->Mbs = Mbs; 1659a23d5eceSKris Buschelman b->Nbs = Mbs; 1660a23d5eceSKris Buschelman 1661a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1662a23d5eceSKris Buschelman b->rowners[0] = 0; 1663a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1664a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1665a23d5eceSKris Buschelman } 1666a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1667a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1668a23d5eceSKris Buschelman b->cstart = b->rstart; 1669a23d5eceSKris Buschelman b->cend = b->rend; 1670a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1671a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1672a23d5eceSKris Buschelman } 1673a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1674a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1675a23d5eceSKris Buschelman 1676a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1677a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1678a23d5eceSKris Buschelman 16799c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16809c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1681c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16829c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 16839c097c71SKris Buschelman 16849c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 16854aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1686589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 16879c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1688a23d5eceSKris Buschelman 1689a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1690a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1691a23d5eceSKris Buschelman 1692a23d5eceSKris Buschelman PetscFunctionReturn(0); 1693a23d5eceSKris Buschelman } 1694a23d5eceSKris Buschelman EXTERN_C_END 1695a23d5eceSKris Buschelman 16960bad9183SKris Buschelman /*MC 1697fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16980bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16990bad9183SKris Buschelman 17000bad9183SKris Buschelman Options Database Keys: 17010bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17020bad9183SKris Buschelman 17030bad9183SKris Buschelman Level: beginner 17040bad9183SKris Buschelman 17050bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17060bad9183SKris Buschelman M*/ 17070bad9183SKris Buschelman 1708a23d5eceSKris Buschelman EXTERN_C_BEGIN 1709a23d5eceSKris Buschelman #undef __FUNCT__ 17104a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1711dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1712b5df2d14SHong Zhang { 1713b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1714dfbe8321SBarry Smith PetscErrorCode ierr; 1715b5df2d14SHong Zhang PetscTruth flg; 1716b5df2d14SHong Zhang 1717b5df2d14SHong Zhang PetscFunctionBegin; 1718b5df2d14SHong Zhang 1719b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1720b0a32e0cSBarry Smith B->data = (void*)b; 1721b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1722b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1723b5df2d14SHong Zhang 1724b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1725b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1726b5df2d14SHong Zhang B->mapping = 0; 1727b5df2d14SHong Zhang B->factor = 0; 1728b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1731b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1732b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1733b5df2d14SHong Zhang 1734b5df2d14SHong Zhang /* build local table of row and column ownerships */ 173582502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1736273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1737273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1738b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1739b5df2d14SHong Zhang 1740b5df2d14SHong Zhang /* build cache for off array entries formed */ 1741b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1742b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1743b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1744b5df2d14SHong Zhang b->garray = PETSC_NULL; 1745b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1746b5df2d14SHong Zhang 1747f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1748b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 174964a35ccbSBarry Smith b->setvalueslen = 0; 1750b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1751b5df2d14SHong Zhang #endif 1752b5df2d14SHong Zhang 1753b5df2d14SHong Zhang /* stuff used in block assembly */ 1754b5df2d14SHong Zhang b->barray = 0; 1755b5df2d14SHong Zhang 1756b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1757b5df2d14SHong Zhang b->lvec = 0; 1758b5df2d14SHong Zhang b->Mvctx = 0; 175940781036SHong Zhang b->slvec0 = 0; 176040781036SHong Zhang b->slvec0b = 0; 176140781036SHong Zhang b->slvec1 = 0; 176240781036SHong Zhang b->slvec1a = 0; 176340781036SHong Zhang b->slvec1b = 0; 176440781036SHong Zhang b->sMvctx = 0; 1765b5df2d14SHong Zhang 1766b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1767b5df2d14SHong Zhang b->rowindices = 0; 1768b5df2d14SHong Zhang b->rowvalues = 0; 1769b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang /* hash table stuff */ 1772b5df2d14SHong Zhang b->ht = 0; 1773b5df2d14SHong Zhang b->hd = 0; 1774b5df2d14SHong Zhang b->ht_size = 0; 1775b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1776b5df2d14SHong Zhang b->ht_fact = 0; 1777b5df2d14SHong Zhang b->ht_total_ct = 0; 1778b5df2d14SHong Zhang b->ht_insert_ct = 0; 1779b5df2d14SHong Zhang 1780e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1781b5df2d14SHong Zhang if (flg) { 1782f6275e2eSBarry Smith PetscReal fact = 1.39; 1783b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1784e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1785b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1786b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1787b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1788b5df2d14SHong Zhang } 1789b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1790b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1791b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1792b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1793b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1794b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1795b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1796b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1797b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1798a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1799a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1800a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 180123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 180223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 180323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 180423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1805b5df2d14SHong Zhang PetscFunctionReturn(0); 1806b5df2d14SHong Zhang } 1807273d9f13SBarry Smith EXTERN_C_END 1808b5df2d14SHong Zhang 1809209238afSKris Buschelman /*MC 1810002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1811209238afSKris Buschelman 1812209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1813209238afSKris Buschelman and MATMPISBAIJ otherwise. 1814209238afSKris Buschelman 1815209238afSKris Buschelman Options Database Keys: 1816209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1817209238afSKris Buschelman 1818209238afSKris Buschelman Level: beginner 1819209238afSKris Buschelman 1820209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1821209238afSKris Buschelman M*/ 1822209238afSKris Buschelman 1823209238afSKris Buschelman EXTERN_C_BEGIN 1824209238afSKris Buschelman #undef __FUNCT__ 1825209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1826dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1827dfbe8321SBarry Smith { 1828*6849ba73SBarry Smith PetscErrorCode ierr; 1829*6849ba73SBarry Smith int size; 1830209238afSKris Buschelman 1831209238afSKris Buschelman PetscFunctionBegin; 1832209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1833209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1834209238afSKris Buschelman if (size == 1) { 1835209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1836209238afSKris Buschelman } else { 1837209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1838209238afSKris Buschelman } 1839209238afSKris Buschelman PetscFunctionReturn(0); 1840209238afSKris Buschelman } 1841209238afSKris Buschelman EXTERN_C_END 1842209238afSKris Buschelman 18434a2ae208SSatish Balay #undef __FUNCT__ 18444a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1845b5df2d14SHong Zhang /*@C 1846b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1847b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1848b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1849b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1850b5df2d14SHong Zhang 1851b5df2d14SHong Zhang Collective on Mat 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang Input Parameters: 1854b5df2d14SHong Zhang + A - the matrix 1855b5df2d14SHong Zhang . bs - size of blockk 1856b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1857b5df2d14SHong Zhang submatrix (same for all local rows) 1858b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18596d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18606d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18616d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1862b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1863b5df2d14SHong Zhang submatrix (same for all local rows). 1864b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1865b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1866b5df2d14SHong Zhang each block row) or PETSC_NULL. 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang 1869b5df2d14SHong Zhang Options Database Keys: 1870b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1871b5df2d14SHong Zhang block calculations (much slower) 1872b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang Notes: 1875b5df2d14SHong Zhang 1876b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1877b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1878b5df2d14SHong Zhang 1879b5df2d14SHong Zhang Storage Information: 1880b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1881b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1882b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1883b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1884b5df2d14SHong Zhang 1885b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1886b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1887b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1888b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1889b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1890b5df2d14SHong Zhang 1891b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1892b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1893b5df2d14SHong Zhang 1894b5df2d14SHong Zhang .vb 1895b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1896b5df2d14SHong Zhang ------------------- 1897b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1898b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1899b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1900b5df2d14SHong Zhang ------------------- 1901b5df2d14SHong Zhang .ve 1902b5df2d14SHong Zhang 1903b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1904b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19056d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19066d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1907b5df2d14SHong Zhang 19086d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19096d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1910b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1911b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1912b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1913b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1914b5df2d14SHong Zhang matrices. 1915b5df2d14SHong Zhang 1916b5df2d14SHong Zhang Level: intermediate 1917b5df2d14SHong Zhang 1918b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1919b5df2d14SHong Zhang 1920b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1921b5df2d14SHong Zhang @*/ 1922dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 1923b5df2d14SHong Zhang { 1924dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,int,int,const int[],int,const int[]); 1925b5df2d14SHong Zhang 1926b5df2d14SHong Zhang PetscFunctionBegin; 1927a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1928a23d5eceSKris Buschelman if (f) { 1929a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1930b5df2d14SHong Zhang } 1931b5df2d14SHong Zhang PetscFunctionReturn(0); 1932b5df2d14SHong Zhang } 1933b5df2d14SHong Zhang 19344a2ae208SSatish Balay #undef __FUNCT__ 19354a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1936a30f8f8cSSatish Balay /*@C 1937a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1938a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1939a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1940a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1941a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1942a30f8f8cSSatish Balay 1943a30f8f8cSSatish Balay Collective on MPI_Comm 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay Input Parameters: 1946a30f8f8cSSatish Balay + comm - MPI communicator 1947a30f8f8cSSatish Balay . bs - size of blockk 1948a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1949a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1950a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1951a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1952a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1953a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1954a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1955a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1956a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1957a30f8f8cSSatish Balay submatrix (same for all local rows) 1958a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19596d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19606d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19616d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1962a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1963a30f8f8cSSatish Balay submatrix (same for all local rows). 1964a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1965a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1966a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay Output Parameter: 1969a30f8f8cSSatish Balay . A - the matrix 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay Options Database Keys: 1972a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1973a30f8f8cSSatish Balay block calculations (much slower) 1974a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1975a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1976a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1977a30f8f8cSSatish Balay 1978a30f8f8cSSatish Balay Notes: 1979a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1980a30f8f8cSSatish Balay (possibly both). 1981a30f8f8cSSatish Balay 1982a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1983a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1984a30f8f8cSSatish Balay 1985a30f8f8cSSatish Balay Storage Information: 1986a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1987a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1988a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1989a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1990a30f8f8cSSatish Balay 1991a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1992a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1993a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1994a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1995a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1996a30f8f8cSSatish Balay 1997a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1998a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay .vb 2001a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2002a30f8f8cSSatish Balay ------------------- 2003a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2004a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2005a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2006a30f8f8cSSatish Balay ------------------- 2007a30f8f8cSSatish Balay .ve 2008a30f8f8cSSatish Balay 2009a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2010a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20116d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20126d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2013a30f8f8cSSatish Balay 20146d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20156d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2016a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2017a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2018a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2019a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2020a30f8f8cSSatish Balay matrices. 2021a30f8f8cSSatish Balay 2022a30f8f8cSSatish Balay Level: intermediate 2023a30f8f8cSSatish Balay 2024a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2025a30f8f8cSSatish Balay 2026a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2027a30f8f8cSSatish Balay @*/ 2028a30f8f8cSSatish Balay 2029dfbe8321SBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 2030a30f8f8cSSatish Balay { 2031*6849ba73SBarry Smith PetscErrorCode ierr; 2032*6849ba73SBarry Smith int size; 2033a30f8f8cSSatish Balay 2034a30f8f8cSSatish Balay PetscFunctionBegin; 2035b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2036273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2037273d9f13SBarry Smith if (size > 1) { 2038b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2039b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2040273d9f13SBarry Smith } else { 2041273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2042273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2043273d9f13SBarry Smith } 2044a30f8f8cSSatish Balay PetscFunctionReturn(0); 2045a30f8f8cSSatish Balay } 2046a30f8f8cSSatish Balay 2047a30f8f8cSSatish Balay 20484a2ae208SSatish Balay #undef __FUNCT__ 20494a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 2050*6849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2051a30f8f8cSSatish Balay { 2052a30f8f8cSSatish Balay Mat mat; 2053a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2054dfbe8321SBarry Smith PetscErrorCode ierr; 2055dfbe8321SBarry Smith int len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs; 2056387bc808SHong Zhang PetscScalar *array; 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay PetscFunctionBegin; 2059a30f8f8cSSatish Balay *newmat = 0; 2060b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2061be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20621d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2063e1b6402fSHong Zhang 206482327fa8SHong Zhang mat->factor = matin->factor; 2065273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20677fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20687fff6886SHong Zhang 2069b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2070a30f8f8cSSatish Balay a->bs = oldmat->bs; 2071a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2072a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2073a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2074a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2075a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2076a30f8f8cSSatish Balay 2077a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2078a30f8f8cSSatish Balay a->rend = oldmat->rend; 2079a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2080a30f8f8cSSatish Balay a->cend = oldmat->cend; 2081a30f8f8cSSatish Balay a->size = oldmat->size; 2082a30f8f8cSSatish Balay a->rank = oldmat->rank; 2083a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2084a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2085a30f8f8cSSatish Balay a->rowindices = 0; 2086a30f8f8cSSatish Balay a->rowvalues = 0; 2087a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2088a30f8f8cSSatish Balay a->barray = 0; 2089a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2090a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2091a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2092a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2093a30f8f8cSSatish Balay 2094a30f8f8cSSatish Balay /* hash table stuff */ 2095a30f8f8cSSatish Balay a->ht = 0; 2096a30f8f8cSSatish Balay a->hd = 0; 2097a30f8f8cSSatish Balay a->ht_size = 0; 2098a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2099a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2100a30f8f8cSSatish Balay a->ht_total_ct = 0; 2101a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2102a30f8f8cSSatish Balay 2103a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2104a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2105a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay if (oldmat->colmap) { 2107a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2108a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2109a30f8f8cSSatish Balay #else 211082502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2111b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2112a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2113a30f8f8cSSatish Balay #endif 2114a30f8f8cSSatish Balay } else a->colmap = 0; 2115387bc808SHong Zhang 2116a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 211782502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2118b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2119a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2120a30f8f8cSSatish Balay } else a->garray = 0; 2121a30f8f8cSSatish Balay 2122a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2123b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2124a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2125b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 212682327fa8SHong Zhang 212782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2128387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 212982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2130387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2131387bc808SHong Zhang 2132387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21331ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2134387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2135387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21361ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21371ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2138387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21391ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 2140387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2141387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2142387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2143387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2144387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2145387bc808SHong Zhang 2146387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2147387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2148387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2149387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 215082327fa8SHong Zhang 2151a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2152b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2153a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2154b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2155b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay *newmat = mat; 2157a30f8f8cSSatish Balay PetscFunctionReturn(0); 2158a30f8f8cSSatish Balay } 2159a30f8f8cSSatish Balay 2160a30f8f8cSSatish Balay #include "petscsys.h" 2161a30f8f8cSSatish Balay 21624a2ae208SSatish Balay #undef __FUNCT__ 21634a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2164dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2165a30f8f8cSSatish Balay { 2166a30f8f8cSSatish Balay Mat A; 2167*6849ba73SBarry Smith PetscErrorCode ierr; 2168*6849ba73SBarry Smith int i,nz,j,rstart,rend,fd; 216987828ca2SBarry Smith PetscScalar *vals,*buf; 2170a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2171a30f8f8cSSatish Balay MPI_Status status; 2172a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2173a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2174a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2175a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2176a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay PetscFunctionBegin; 2179b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay 2181a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay if (!rank) { 2184b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2186552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2187a30f8f8cSSatish Balay if (header[3] < 0) { 218829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay } 2191a30f8f8cSSatish Balay 2192a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2194a30f8f8cSSatish Balay 219529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2196a30f8f8cSSatish Balay 2197a30f8f8cSSatish Balay /* 2198a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2199a30f8f8cSSatish Balay divisible by the blocksize 2200a30f8f8cSSatish Balay */ 2201a30f8f8cSSatish Balay Mbs = M/bs; 2202a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2203a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2204a30f8f8cSSatish Balay else Mbs++; 2205a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2206b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2207a30f8f8cSSatish Balay } 2208a30f8f8cSSatish Balay 2209a30f8f8cSSatish Balay /* determine ownership of all rows */ 2210a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2211a30f8f8cSSatish Balay m = mbs*bs; 2212b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay browners = rowners + size + 1; 2214a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay rowners[0] = 0; 2216a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2217a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2218a30f8f8cSSatish Balay rstart = rowners[rank]; 2219a30f8f8cSSatish Balay rend = rowners[rank+1]; 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 222282502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay if (!rank) { 2224b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 222782502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2229a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay } else { 2232a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay } 2234a30f8f8cSSatish Balay 22350222edb1SHong Zhang if (!rank) { /* procs[0] */ 2236a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 223782502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2238a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2239a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2240a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2241a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2242a30f8f8cSSatish Balay } 2243a30f8f8cSSatish Balay } 2244a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay 2246a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2247a30f8f8cSSatish Balay maxnz = 0; 2248a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2249a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2250a30f8f8cSSatish Balay } 225182502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2254a30f8f8cSSatish Balay nz = procsnz[0]; 225582502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay mycols = ibuf; 2257a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2258a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2259a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2260a30f8f8cSSatish Balay 2261a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2262a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2263a30f8f8cSSatish Balay nz = procsnz[i]; 2264a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay } 2267a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2268a30f8f8cSSatish Balay if (size != 1) { 2269a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2270a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2271a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2272a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2273a30f8f8cSSatish Balay } 2274a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22750222edb1SHong Zhang } else { /* procs[i], i>0 */ 2276a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2277a30f8f8cSSatish Balay nz = 0; 2278a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2279a30f8f8cSSatish Balay nz += locrowlens[i]; 2280a30f8f8cSSatish Balay } 228182502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2282a30f8f8cSSatish Balay mycols = ibuf; 2283a30f8f8cSSatish Balay /* receive message of column indices*/ 2284a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2285a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 228629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2287a30f8f8cSSatish Balay } 2288a30f8f8cSSatish Balay 2289a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 229082502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 229282502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2293a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2294a30f8f8cSSatish Balay masked1 = mask + Mbs; 2295a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2296a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2297a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2298a30f8f8cSSatish Balay dcount = 0; 2299a30f8f8cSSatish Balay odcount = 0; 2300a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2301a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2302a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23030222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2304a30f8f8cSSatish Balay if (!mask[tmp]) { 2305a30f8f8cSSatish Balay mask[tmp] = 1; 23060222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23070222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay } 2310a30f8f8cSSatish Balay rowcount++; 2311a30f8f8cSSatish Balay } 2312a30f8f8cSSatish Balay 23130222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23140222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2315a30f8f8cSSatish Balay 2316a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2317a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2318a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2319a30f8f8cSSatish Balay } 2320a30f8f8cSSatish Balay 2321a30f8f8cSSatish Balay /* create our matrix */ 232222191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 232322191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232422191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2325273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay if (!rank) { 232887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2329a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2330a30f8f8cSSatish Balay nz = procsnz[0]; 2331a30f8f8cSSatish Balay vals = buf; 2332a30f8f8cSSatish Balay mycols = ibuf; 2333a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2334a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2335a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2336a30f8f8cSSatish Balay 2337a30f8f8cSSatish Balay /* insert into matrix */ 2338a30f8f8cSSatish Balay jj = rstart*bs; 2339a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23407e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay mycols += locrowlens[i]; 2342a30f8f8cSSatish Balay vals += locrowlens[i]; 2343a30f8f8cSSatish Balay jj++; 2344a30f8f8cSSatish Balay } 23457e06b45fSHong Zhang 2346a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2347a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2348a30f8f8cSSatish Balay nz = procsnz[i]; 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2352a30f8f8cSSatish Balay } 2353a30f8f8cSSatish Balay /* the last proc */ 2354a30f8f8cSSatish Balay if (size != 1){ 2355a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2356a30f8f8cSSatish Balay vals = buf; 2357a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2359a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2360a30f8f8cSSatish Balay } 2361a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23627e06b45fSHong Zhang 2363a30f8f8cSSatish Balay } else { 2364a30f8f8cSSatish Balay /* receive numeric values */ 236587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay /* receive message of values*/ 2368a30f8f8cSSatish Balay vals = buf; 2369a30f8f8cSSatish Balay mycols = ibuf; 2370a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay /* insert into matrix */ 2375a30f8f8cSSatish Balay jj = rstart*bs; 2376a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2377a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay mycols += locrowlens[i]; 2379a30f8f8cSSatish Balay vals += locrowlens[i]; 2380a30f8f8cSSatish Balay jj++; 2381a30f8f8cSSatish Balay } 2382a30f8f8cSSatish Balay } 23837e06b45fSHong Zhang 2384a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2385a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2386a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2387a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2389a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2390a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2391a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239222191285SKris Buschelman *newmat = A; 2393a30f8f8cSSatish Balay PetscFunctionReturn(0); 2394a30f8f8cSSatish Balay } 2395a30f8f8cSSatish Balay 23964a2ae208SSatish Balay #undef __FUNCT__ 23974a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2398a30f8f8cSSatish Balay /*@ 2399a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2400a30f8f8cSSatish Balay 2401a30f8f8cSSatish Balay Input Parameters: 2402a30f8f8cSSatish Balay . mat - the matrix 2403a30f8f8cSSatish Balay . fact - factor 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay Collective on Mat 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay Level: advanced 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay Notes: 2410a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2413a30f8f8cSSatish Balay 2414a30f8f8cSSatish Balay .seealso: MatSetOption() 2415a30f8f8cSSatish Balay @*/ 2416dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2417a30f8f8cSSatish Balay { 2418a30f8f8cSSatish Balay PetscFunctionBegin; 241929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 242096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2421a30f8f8cSSatish Balay } 242224d5174aSHong Zhang 24234a2ae208SSatish Balay #undef __FUNCT__ 24244a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2425dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 242624d5174aSHong Zhang { 242724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2428f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2429ca54ac64SHong Zhang PetscReal atmp; 243087828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2431dfbe8321SBarry Smith PetscErrorCode ierr; 2432dfbe8321SBarry Smith int i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2433154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 243487828ca2SBarry Smith PetscScalar *va; 24358a1c53f2SBarry Smith MatScalar *ba; 2436f4c0e9e4SHong Zhang MPI_Status stat; 243724d5174aSHong Zhang 243824d5174aSHong Zhang PetscFunctionBegin; 2439d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24401ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2441f4c0e9e4SHong Zhang 244256faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 244356faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2444f4c0e9e4SHong Zhang 2445f4c0e9e4SHong Zhang bs = a->bs; 2446f4c0e9e4SHong Zhang mbs = a->mbs; 2447f4c0e9e4SHong Zhang Mbs = a->Mbs; 2448f4c0e9e4SHong Zhang ba = b->a; 2449f4c0e9e4SHong Zhang bi = b->i; 2450f4c0e9e4SHong Zhang bj = b->j; 2451ca54ac64SHong Zhang /* 245256faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 245356faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2454ca54ac64SHong Zhang */ 2455f4c0e9e4SHong Zhang 2456f4c0e9e4SHong Zhang /* find ownerships */ 2457f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2458f4c0e9e4SHong Zhang /* 245904d41228SHong Zhang if (!rank){ 246004d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2461f4c0e9e4SHong Zhang } 2462f4c0e9e4SHong Zhang */ 2463f4c0e9e4SHong Zhang 2464f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 246582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2466ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2467f4c0e9e4SHong Zhang 2468f4c0e9e4SHong Zhang /* row_max for B */ 2469b8475685SHong Zhang if (rank != size-1){ 2470f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2471f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2472f4c0e9e4SHong Zhang brow = bs*i; 2473f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2474f4c0e9e4SHong Zhang bcol = bs*(*bj); 2475f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2476ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 247704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2478ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2479f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2480f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2481ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2482f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2483ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2484f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2485f4c0e9e4SHong Zhang } 2486f4c0e9e4SHong Zhang } 2487f4c0e9e4SHong Zhang bj++; 2488f4c0e9e4SHong Zhang } 2489f4c0e9e4SHong Zhang } 249004d41228SHong Zhang /* 249104d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 249204d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 249304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 249404d41228SHong Zhang */ 2495f4c0e9e4SHong Zhang 2496f4c0e9e4SHong Zhang /* send values to its owners */ 2497f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2498f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2499ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 250056faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2501ca54ac64SHong Zhang /* 250256faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 250356faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2504ca54ac64SHong Zhang */ 2505ca54ac64SHong Zhang } 2506f4c0e9e4SHong Zhang } 2507f4c0e9e4SHong Zhang 2508f4c0e9e4SHong Zhang /* receive values */ 2509ca54ac64SHong Zhang if (rank){ 2510f4c0e9e4SHong Zhang rvalues = work; 2511ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2512f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 251356faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2514f4c0e9e4SHong Zhang /* process values */ 2515f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2516ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2517f4c0e9e4SHong Zhang } 2518ca54ac64SHong Zhang /* 251956faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 252056faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2521ca54ac64SHong Zhang */ 2522f4c0e9e4SHong Zhang } 2523ca54ac64SHong Zhang } 2524f4c0e9e4SHong Zhang 25251ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2526ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 252724d5174aSHong Zhang PetscFunctionReturn(0); 252824d5174aSHong Zhang } 25292798e883SHong Zhang 25302798e883SHong Zhang #undef __FUNCT__ 25312798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2532dfbe8321SBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 25332798e883SHong Zhang { 25342798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2535dfbe8321SBarry Smith PetscErrorCode ierr; 2536dfbe8321SBarry Smith int mbs=mat->mbs,bs=mat->bs; 2537ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2538ffe4fb16SHong Zhang Vec bb1; 2539ffe4fb16SHong Zhang 2540ffe4fb16SHong Zhang PetscFunctionBegin; 2541ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2542ffe4fb16SHong Zhang if (bs > 1) 2543ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2544ffe4fb16SHong Zhang 2545ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2546ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2547ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2548ffe4fb16SHong Zhang its--; 2549ffe4fb16SHong Zhang } 2550ffe4fb16SHong Zhang 2551ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2552ffe4fb16SHong Zhang while (its--){ 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2555ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25581ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25591ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2560ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25611ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2562ffe4fb16SHong Zhang 2563ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2564ffe4fb16SHong Zhang 2565ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25661ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25671ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2568ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25691ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2570ffe4fb16SHong Zhang 2571ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2572ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2573ffe4fb16SHong Zhang 2574ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25751ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25761ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2577ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2578ffe4fb16SHong Zhang 2579ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2580ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2581ffe4fb16SHong Zhang 2582ffe4fb16SHong Zhang /* local diagonal sweep */ 2583ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2584ffe4fb16SHong Zhang } 2585ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2586ffe4fb16SHong Zhang } else { 2587ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2588ffe4fb16SHong Zhang } 2589ffe4fb16SHong Zhang PetscFunctionReturn(0); 2590ffe4fb16SHong Zhang } 2591ffe4fb16SHong Zhang 2592ffe4fb16SHong Zhang #undef __FUNCT__ 2593ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2594dfbe8321SBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2595ffe4fb16SHong Zhang { 2596ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2597dfbe8321SBarry Smith PetscErrorCode ierr; 2598d05c616dSSatish Balay PetscScalar mone=-1.0; 25992798e883SHong Zhang Vec lvec1,bb1; 26002798e883SHong Zhang 26012798e883SHong Zhang PetscFunctionBegin; 260291723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 26032798e883SHong Zhang if (mat->bs > 1) 26042798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26052798e883SHong Zhang 2606c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26072798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2608bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26092798e883SHong Zhang its--; 26102798e883SHong Zhang } 26112798e883SHong Zhang 26122798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26132798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26142798e883SHong Zhang while (its--){ 26152798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 26162798e883SHong Zhang 26172798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26182798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 26192798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 26202798e883SHong Zhang 26212798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 26222798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 26232798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26242798e883SHong Zhang 26252798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 26262798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 26272798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26282798e883SHong Zhang 26292798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26302798e883SHong Zhang 2631c14dc6b6SHong Zhang /* diagonal sweep */ 2632bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26332798e883SHong Zhang } 26342798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26352798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2636c14dc6b6SHong Zhang } else { 2637c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2638c14dc6b6SHong Zhang } 26392798e883SHong Zhang PetscFunctionReturn(0); 26402798e883SHong Zhang } 26412798e883SHong Zhang 2642