1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 239dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 240dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 241a30f8f8cSSatish Balay { 2420880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 243f15d580aSBarry Smith const MatScalar *value; 244f15d580aSBarry Smith MatScalar *barray =baij->barray; 245ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 246dfbe8321SBarry Smith PetscErrorCode ierr; 247899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 248899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 249d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2500880e062SHong Zhang 251a30f8f8cSSatish Balay PetscFunctionBegin; 2520880e062SHong Zhang if (!barray) { 253785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2540880e062SHong Zhang baij->barray = barray; 2550880e062SHong Zhang } 2560880e062SHong Zhang 2570880e062SHong Zhang if (roworiented) { 2580880e062SHong Zhang stepval = (n-1)*bs; 2590880e062SHong Zhang } else { 2600880e062SHong Zhang stepval = (m-1)*bs; 2610880e062SHong Zhang } 2620880e062SHong Zhang for (i=0; i<m; i++) { 2630880e062SHong Zhang if (im[i] < 0) continue; 2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 265e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2660880e062SHong Zhang #endif 2670880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2680880e062SHong Zhang row = im[i] - rstart; 2690880e062SHong Zhang for (j=0; j<n; j++) { 270f3f98c53SJed Brown if (im[i] > in[j]) { 271f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 272e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 273f3f98c53SJed Brown } 2740880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2750880e062SHong Zhang if ((roworiented) && (n == 1)) { 276f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2770880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 278f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2790880e062SHong Zhang } else { /* Here a copy is required */ 2800880e062SHong Zhang if (roworiented) { 2810880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2820880e062SHong Zhang } else { 2830880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2840880e062SHong Zhang } 2850880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2860880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2870880e062SHong Zhang *barray++ = *value++; 2880880e062SHong Zhang } 2890880e062SHong Zhang } 2900880e062SHong Zhang barray -=bs2; 2910880e062SHong Zhang } 2920880e062SHong Zhang 2930880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 2940880e062SHong Zhang col = in[j] - cstart; 2950880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 29626fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 2972515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 298cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 2990880e062SHong Zhang #endif 3000880e062SHong Zhang else { 3010880e062SHong Zhang if (mat->was_assembled) { 3020880e062SHong Zhang if (!baij->colmap) { 303ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3040880e062SHong Zhang } 3050880e062SHong Zhang 3062515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3070880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3081302d50aSBarry Smith { PetscInt data; 3090880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 310e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3110880e062SHong Zhang } 3120880e062SHong Zhang #else 313e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3140880e062SHong Zhang #endif 3150880e062SHong Zhang #endif 3160880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3170880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3180880e062SHong Zhang col = (col - 1)/bs; 3190880e062SHong Zhang #else 3200880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3210880e062SHong Zhang #endif 3220880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 323ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3240880e062SHong Zhang col = in[j]; 3250880e062SHong Zhang } 32626fbe8dcSKarl Rupp } else col = in[j]; 327e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3280880e062SHong Zhang } 3290880e062SHong Zhang } 3300880e062SHong Zhang } else { 3314cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3320880e062SHong Zhang if (!baij->donotstash) { 3330880e062SHong Zhang if (roworiented) { 3340880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3350880e062SHong Zhang } else { 3360880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3370880e062SHong Zhang } 3380880e062SHong Zhang } 3390880e062SHong Zhang } 3400880e062SHong Zhang } 3410880e062SHong Zhang PetscFunctionReturn(0); 342a30f8f8cSSatish Balay } 343a30f8f8cSSatish Balay 3444a2ae208SSatish Balay #undef __FUNCT__ 3454a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3461302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 347a30f8f8cSSatish Balay { 348f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3496849ba73SBarry Smith PetscErrorCode ierr; 350d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 351d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay PetscFunctionBegin; 354a30f8f8cSSatish Balay for (i=0; i<m; i++) { 355e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 356e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 357a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 358a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 359a30f8f8cSSatish Balay for (j=0; j<n; j++) { 360e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 361e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 362a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 363a30f8f8cSSatish Balay col = idxn[j] - bscstart; 364c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 365a30f8f8cSSatish Balay } else { 366a30f8f8cSSatish Balay if (!baij->colmap) { 367ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 368a30f8f8cSSatish Balay } 369a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 370a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 371a30f8f8cSSatish Balay data--; 372a30f8f8cSSatish Balay #else 373a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 374a30f8f8cSSatish Balay #endif 375a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 376a30f8f8cSSatish Balay else { 377a30f8f8cSSatish Balay col = data + idxn[j]%bs; 378e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay } 382f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 383a30f8f8cSSatish Balay } 384a30f8f8cSSatish Balay PetscFunctionReturn(0); 385a30f8f8cSSatish Balay } 386a30f8f8cSSatish Balay 3874a2ae208SSatish Balay #undef __FUNCT__ 3884a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 389dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 390a30f8f8cSSatish Balay { 391a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 392dfbe8321SBarry Smith PetscErrorCode ierr; 393a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 394a30f8f8cSSatish Balay 395a30f8f8cSSatish Balay PetscFunctionBegin; 396a30f8f8cSSatish Balay if (baij->size == 1) { 397a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 398a30f8f8cSSatish Balay } else { 399a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 400785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 401a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 402a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 403a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 404a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 405ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4068f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 407a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4080b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4090b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4100b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4110b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 412899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 413d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4140b8dc8d2SHong Zhang MatScalar *v; 4150b8dc8d2SHong Zhang 416dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 417d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4180b8dc8d2SHong Zhang /* Amat */ 4190b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4200b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4210b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4220b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4230b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4240b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4250b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4260b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4270b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4280b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4290b8dc8d2SHong Zhang /* non-diagonal block */ 4300b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4310b8dc8d2SHong Zhang } 4320b8dc8d2SHong Zhang } 4330b8dc8d2SHong Zhang } 4340b8dc8d2SHong Zhang } 4350b8dc8d2SHong Zhang /* Bmat */ 4360b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4370b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4380b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4390b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4400b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4410b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4420b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4430b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4440b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4450b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4460b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 451ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4520b8dc8d2SHong Zhang *norm = 0.0; 453d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4540b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4550b8dc8d2SHong Zhang } 45674ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 457f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay PetscFunctionReturn(0); 460a30f8f8cSSatish Balay } 461a30f8f8cSSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 4634a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 464dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 465a30f8f8cSSatish Balay { 466a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 467dfbe8321SBarry Smith PetscErrorCode ierr; 4681302d50aSBarry Smith PetscInt nstash,reallocs; 469a30f8f8cSSatish Balay InsertMode addv; 470a30f8f8cSSatish Balay 471a30f8f8cSSatish Balay PetscFunctionBegin; 47226fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 473a30f8f8cSSatish Balay 474a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 475ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 476ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 477a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 478a30f8f8cSSatish Balay 479d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4801e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 481a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4821e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 483a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4841e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 485a30f8f8cSSatish Balay PetscFunctionReturn(0); 486a30f8f8cSSatish Balay } 487a30f8f8cSSatish Balay 4884a2ae208SSatish Balay #undef __FUNCT__ 4894a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 490dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 491a30f8f8cSSatish Balay { 492a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 493a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 4946849ba73SBarry Smith PetscErrorCode ierr; 49513f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 496e44c0bd4SBarry Smith PetscInt *row,*col; 497ace3abfcSBarry Smith PetscBool other_disassembled; 49813f74950SBarry Smith PetscMPIInt n; 499ace3abfcSBarry Smith PetscBool r1,r2,r3; 500a30f8f8cSSatish Balay MatScalar *val; 501a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 502a30f8f8cSSatish Balay 50391c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 504a30f8f8cSSatish Balay PetscFunctionBegin; 5054cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 506a30f8f8cSSatish Balay while (1) { 507a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 508a30f8f8cSSatish Balay if (!flg) break; 509a30f8f8cSSatish Balay 510a30f8f8cSSatish Balay for (i=0; i<n;) { 511a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 51226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 51326fbe8dcSKarl Rupp if (row[j] != rstart) break; 51426fbe8dcSKarl Rupp } 515a30f8f8cSSatish Balay if (j < n) ncols = j-i; 516a30f8f8cSSatish Balay else ncols = n-i; 517a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 518dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 519a30f8f8cSSatish Balay i = j; 520a30f8f8cSSatish Balay } 521a30f8f8cSSatish Balay } 522a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 523a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 524a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 525a30f8f8cSSatish Balay restore the original flags */ 526a30f8f8cSSatish Balay r1 = baij->roworiented; 527a30f8f8cSSatish Balay r2 = a->roworiented; 52891c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 52926fbe8dcSKarl Rupp 530a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 531a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 53226fbe8dcSKarl Rupp 53391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 534a30f8f8cSSatish Balay while (1) { 535a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 536a30f8f8cSSatish Balay if (!flg) break; 537a30f8f8cSSatish Balay 538a30f8f8cSSatish Balay for (i=0; i<n;) { 539a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 54026fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 54126fbe8dcSKarl Rupp if (row[j] != rstart) break; 54226fbe8dcSKarl Rupp } 543a30f8f8cSSatish Balay if (j < n) ncols = j-i; 544a30f8f8cSSatish Balay else ncols = n-i; 545dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 546a30f8f8cSSatish Balay i = j; 547a30f8f8cSSatish Balay } 548a30f8f8cSSatish Balay } 549a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 55026fbe8dcSKarl Rupp 551a30f8f8cSSatish Balay baij->roworiented = r1; 552a30f8f8cSSatish Balay a->roworiented = r2; 55326fbe8dcSKarl Rupp 55491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 555a30f8f8cSSatish Balay } 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 558a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 561a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 562a30f8f8cSSatish Balay /* 563a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 564a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 565a30f8f8cSSatish Balay */ 566a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 567ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 568a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 569ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 57440781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 578a30f8f8cSSatish Balay 57974ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 58026fbe8dcSKarl Rupp 581a30f8f8cSSatish Balay baij->rowvalues = 0; 5824f9cfa9eSBarry Smith 5834f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 5844f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 585e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 58609e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 587e56f5c9eSBarry Smith } 588a30f8f8cSSatish Balay PetscFunctionReturn(0); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay 5917da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 592dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 5939804daf3SBarry Smith #include <petscdraw.h> 5944a2ae208SSatish Balay #undef __FUNCT__ 5954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 5966849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 597a30f8f8cSSatish Balay { 598a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 599dfbe8321SBarry Smith PetscErrorCode ierr; 600d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6017da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 602ace3abfcSBarry Smith PetscBool iascii,isdraw; 603b0a32e0cSBarry Smith PetscViewer sviewer; 604f3ef73ceSBarry Smith PetscViewerFormat format; 605a30f8f8cSSatish Balay 606a30f8f8cSSatish Balay PetscFunctionBegin; 607251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 608251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 60932077d6dSBarry Smith if (iascii) { 610b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 611456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 612a30f8f8cSSatish Balay MatInfo info; 613ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 614a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6157b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6167b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 617a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 618e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 619a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 620e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 621b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6227b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 62307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 624a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 625a30f8f8cSSatish Balay PetscFunctionReturn(0); 626fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 62777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 628a30f8f8cSSatish Balay PetscFunctionReturn(0); 629c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 630c1490034SHong Zhang PetscFunctionReturn(0); 631a30f8f8cSSatish Balay } 632a30f8f8cSSatish Balay } 633a30f8f8cSSatish Balay 634a30f8f8cSSatish Balay if (isdraw) { 635b0a32e0cSBarry Smith PetscDraw draw; 636ace3abfcSBarry Smith PetscBool isnull; 637b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 638b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay 6417da1fb6eSBarry Smith { 642a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 643a30f8f8cSSatish Balay Mat A; 64465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 64565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 646d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 647a30f8f8cSSatish Balay MatScalar *a; 6483e219373SBarry Smith const char *matname; 649a30f8f8cSSatish Balay 650f204ca49SKris Buschelman /* Should this be the same type as mat? */ 651ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 652a30f8f8cSSatish Balay if (!rank) { 653f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 654a30f8f8cSSatish Balay } else { 655f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 656a30f8f8cSSatish Balay } 657f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6580298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6592b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 661a30f8f8cSSatish Balay 662a30f8f8cSSatish Balay /* copy over the A part */ 66365d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 664a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 665785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 666a30f8f8cSSatish Balay 667a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 668e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 66926fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 670a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 671e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 672a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 673dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 67426fbe8dcSKarl Rupp col++; 67526fbe8dcSKarl Rupp a += bs; 676a30f8f8cSSatish Balay } 677a30f8f8cSSatish Balay } 678a30f8f8cSSatish Balay } 679a30f8f8cSSatish Balay /* copy over the B part */ 68065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 682a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 683e9f7bc9eSHong Zhang 684e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68526fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 686a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 687a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 688a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 689799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 69026fbe8dcSKarl Rupp col++; 69126fbe8dcSKarl Rupp a += bs; 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 697a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 698a30f8f8cSSatish Balay /* 699a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 700b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 701a30f8f8cSSatish Balay */ 702b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 703ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 7043e219373SBarry Smith if (!rank) { 705ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 7067da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 707a30f8f8cSSatish Balay } 708b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7096bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay PetscFunctionReturn(0); 712a30f8f8cSSatish Balay } 713a30f8f8cSSatish Balay 7144a2ae208SSatish Balay #undef __FUNCT__ 7154a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 716dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 717a30f8f8cSSatish Balay { 718dfbe8321SBarry Smith PetscErrorCode ierr; 719ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 720a30f8f8cSSatish Balay 721a30f8f8cSSatish Balay PetscFunctionBegin; 722251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 723251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 724251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 725251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 72632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 727a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay PetscFunctionReturn(0); 730a30f8f8cSSatish Balay } 731a30f8f8cSSatish Balay 7324a2ae208SSatish Balay #undef __FUNCT__ 7334a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 734dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 735a30f8f8cSSatish Balay { 736a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 737dfbe8321SBarry Smith PetscErrorCode ierr; 738a30f8f8cSSatish Balay 739a30f8f8cSSatish Balay PetscFunctionBegin; 740a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 741d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 742a30f8f8cSSatish Balay #endif 743a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 744a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7456bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7466bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 747a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7486bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 749a30f8f8cSSatish Balay #else 75005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 751a30f8f8cSSatish Balay #endif 75205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7536bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7546bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7556bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7566bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7576bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7586bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7596bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7606bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7615755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 76205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 76305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7646bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7656bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 767ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 76805b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 769a30f8f8cSSatish Balay #endif 77059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 77159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 772899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 773bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 774901853e0SKris Buschelman 775dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 776bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 777bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 778bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 779bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 780bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 7816214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 7826214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 7836214f412SHong Zhang #endif 784a30f8f8cSSatish Balay PetscFunctionReturn(0); 785a30f8f8cSSatish Balay } 786a30f8f8cSSatish Balay 7874a2ae208SSatish Balay #undef __FUNCT__ 788547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 789547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 790547795f9SHong Zhang { 791547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 792547795f9SHong Zhang PetscErrorCode ierr; 793547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 794547795f9SHong Zhang PetscScalar *x,*from; 795547795f9SHong Zhang 796547795f9SHong Zhang PetscFunctionBegin; 797547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 798e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 799547795f9SHong Zhang 800547795f9SHong Zhang /* diagonal part */ 801547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 802547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 803547795f9SHong Zhang 804547795f9SHong Zhang /* subdiagonal part */ 805547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 806547795f9SHong Zhang 807547795f9SHong Zhang /* copy x into the vec slvec0 */ 808547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 809547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 810547795f9SHong Zhang 811547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 812547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 813547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 814547795f9SHong Zhang 815547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 816547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 817547795f9SHong Zhang /* supperdiagonal part */ 818547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 819547795f9SHong Zhang PetscFunctionReturn(0); 820547795f9SHong Zhang } 821547795f9SHong Zhang 822547795f9SHong Zhang #undef __FUNCT__ 823a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 824dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 825a9d4b620SHong Zhang { 826a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 827dfbe8321SBarry Smith PetscErrorCode ierr; 828d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 829d9ca1df4SBarry Smith PetscScalar *from; 830d9ca1df4SBarry Smith const PetscScalar *x; 831a9d4b620SHong Zhang 832a9d4b620SHong Zhang PetscFunctionBegin; 833a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 834e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 835a9d4b620SHong Zhang 836a9d4b620SHong Zhang /* diagonal part */ 837a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 838fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 839a9d4b620SHong Zhang 840a9d4b620SHong Zhang /* subdiagonal part */ 841a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 842fc165ae2SBarry Smith 843a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8441ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 845d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 846a9d4b620SHong Zhang 847fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 848fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 849d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 850fc165ae2SBarry Smith 851fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 852ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 853a9d4b620SHong Zhang /* supperdiagonal part */ 854a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 855a9d4b620SHong Zhang PetscFunctionReturn(0); 856a9d4b620SHong Zhang } 857a9d4b620SHong Zhang 858a9d4b620SHong Zhang #undef __FUNCT__ 85940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 860dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 861a30f8f8cSSatish Balay { 862a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 863dfbe8321SBarry Smith PetscErrorCode ierr; 8641302d50aSBarry Smith PetscInt nt; 865a30f8f8cSSatish Balay 866a30f8f8cSSatish Balay PetscFunctionBegin; 867a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 868e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 869e7e72b3dSBarry Smith 870a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 871e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 87265d70643SHong Zhang 873ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 874b941877fSHong Zhang /* do diagonal part */ 875b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 876b941877fSHong Zhang /* do supperdiagonal part */ 877ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 878b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 879b941877fSHong Zhang /* do subdiagonal part */ 880b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 881ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 882ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 883a30f8f8cSSatish Balay PetscFunctionReturn(0); 884a30f8f8cSSatish Balay } 885a30f8f8cSSatish Balay 8864a2ae208SSatish Balay #undef __FUNCT__ 8874a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 888dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 889a30f8f8cSSatish Balay { 890de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 891dfbe8321SBarry Smith PetscErrorCode ierr; 892d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 893d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 894d9ca1df4SBarry Smith const PetscScalar *x; 895a9d4b620SHong Zhang 896a9d4b620SHong Zhang PetscFunctionBegin; 897a9d4b620SHong Zhang /* 898ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 8990ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 900a9d4b620SHong Zhang */ 901a9d4b620SHong Zhang /* diagonal part */ 902a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9032dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang /* subdiagonal part */ 906a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 907a9d4b620SHong Zhang 908a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9091ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 910d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 911a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9121ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 913a9d4b620SHong Zhang 914ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 915d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 916ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 917a9d4b620SHong Zhang 918a9d4b620SHong Zhang /* supperdiagonal part */ 919a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 920a9d4b620SHong Zhang PetscFunctionReturn(0); 921a9d4b620SHong Zhang } 922a9d4b620SHong Zhang 923a9d4b620SHong Zhang #undef __FUNCT__ 924a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 925dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 926a9d4b620SHong Zhang { 927a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 928dfbe8321SBarry Smith PetscErrorCode ierr; 929a30f8f8cSSatish Balay 930a30f8f8cSSatish Balay PetscFunctionBegin; 931ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 932b941877fSHong Zhang /* do diagonal part */ 933b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 934b941877fSHong Zhang /* do supperdiagonal part */ 935ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 936de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 937de8b6608SHong Zhang 938b941877fSHong Zhang /* do subdiagonal part */ 939a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 940ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 941ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 942a30f8f8cSSatish Balay PetscFunctionReturn(0); 943a30f8f8cSSatish Balay } 944a30f8f8cSSatish Balay 945a30f8f8cSSatish Balay /* 946a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 947a30f8f8cSSatish Balay diagonal block 948a30f8f8cSSatish Balay */ 9494a2ae208SSatish Balay #undef __FUNCT__ 9504a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 951dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 952a30f8f8cSSatish Balay { 953a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 954dfbe8321SBarry Smith PetscErrorCode ierr; 955a30f8f8cSSatish Balay 956a30f8f8cSSatish Balay PetscFunctionBegin; 957e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 958a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 959a30f8f8cSSatish Balay PetscFunctionReturn(0); 960a30f8f8cSSatish Balay } 961a30f8f8cSSatish Balay 9624a2ae208SSatish Balay #undef __FUNCT__ 9634a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 964f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 965a30f8f8cSSatish Balay { 966a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 967dfbe8321SBarry Smith PetscErrorCode ierr; 968a30f8f8cSSatish Balay 969a30f8f8cSSatish Balay PetscFunctionBegin; 970f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 971f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 972a30f8f8cSSatish Balay PetscFunctionReturn(0); 973a30f8f8cSSatish Balay } 974a30f8f8cSSatish Balay 9754a2ae208SSatish Balay #undef __FUNCT__ 9764a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9771302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 978a30f8f8cSSatish Balay { 979d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 980d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 981d0d4cfc2SHong Zhang PetscErrorCode ierr; 982d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 983d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 984899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 985d0d4cfc2SHong Zhang 986a30f8f8cSSatish Balay PetscFunctionBegin; 987e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 988d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 989d0d4cfc2SHong Zhang 990d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 991d0d4cfc2SHong Zhang /* 992d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 993d0d4cfc2SHong Zhang */ 994d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 995d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 996d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 997d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 998d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 99926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1000d0d4cfc2SHong Zhang } 1001dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1002d0d4cfc2SHong Zhang } 1003d0d4cfc2SHong Zhang 1004e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1005d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1006d0d4cfc2SHong Zhang 1007d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1008d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1009d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1010d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1011d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1012d0d4cfc2SHong Zhang nztot = nzA + nzB; 1013d0d4cfc2SHong Zhang 1014d0d4cfc2SHong Zhang cmap = mat->garray; 1015d0d4cfc2SHong Zhang if (v || idx) { 1016d0d4cfc2SHong Zhang if (nztot) { 1017d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1018d0d4cfc2SHong Zhang PetscInt imark = -1; 1019d0d4cfc2SHong Zhang if (v) { 1020d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1021d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1022d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1023d0d4cfc2SHong Zhang else break; 1024d0d4cfc2SHong Zhang } 1025d0d4cfc2SHong Zhang imark = i; 1026d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1027d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1028d0d4cfc2SHong Zhang } 1029d0d4cfc2SHong Zhang if (idx) { 1030d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1031d0d4cfc2SHong Zhang if (imark > -1) { 1032d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1033d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1034d0d4cfc2SHong Zhang } 1035d0d4cfc2SHong Zhang } else { 1036d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 103726fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1038d0d4cfc2SHong Zhang else break; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang imark = i; 1041d0d4cfc2SHong Zhang } 1042d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1043d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1044d0d4cfc2SHong Zhang } 1045d0d4cfc2SHong Zhang } else { 1046d0d4cfc2SHong Zhang if (idx) *idx = 0; 1047d0d4cfc2SHong Zhang if (v) *v = 0; 1048d0d4cfc2SHong Zhang } 1049d0d4cfc2SHong Zhang } 1050d0d4cfc2SHong Zhang *nz = nztot; 1051d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1052d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1053a30f8f8cSSatish Balay PetscFunctionReturn(0); 1054a30f8f8cSSatish Balay } 1055a30f8f8cSSatish Balay 10564a2ae208SSatish Balay #undef __FUNCT__ 10574a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10581302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1059a30f8f8cSSatish Balay { 1060a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1061a30f8f8cSSatish Balay 1062a30f8f8cSSatish Balay PetscFunctionBegin; 1063e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1064a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1065a30f8f8cSSatish Balay PetscFunctionReturn(0); 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 1069d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1070d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1071d0d4cfc2SHong Zhang { 1072d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1073d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1074d0d4cfc2SHong Zhang 1075d0d4cfc2SHong Zhang PetscFunctionBegin; 1076d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1077d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1078d0d4cfc2SHong Zhang } 1079d0d4cfc2SHong Zhang #undef __FUNCT__ 1080d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1081d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1082d0d4cfc2SHong Zhang { 1083d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1084d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1085d0d4cfc2SHong Zhang 1086d0d4cfc2SHong Zhang PetscFunctionBegin; 1087d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1088d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1089d0d4cfc2SHong Zhang } 1090d0d4cfc2SHong Zhang 1091d0d4cfc2SHong Zhang #undef __FUNCT__ 109299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 109399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 109499cafbc1SBarry Smith { 109599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 109699cafbc1SBarry Smith PetscErrorCode ierr; 109799cafbc1SBarry Smith 109899cafbc1SBarry Smith PetscFunctionBegin; 109999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 110099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 110199cafbc1SBarry Smith PetscFunctionReturn(0); 110299cafbc1SBarry Smith } 110399cafbc1SBarry Smith 110499cafbc1SBarry Smith #undef __FUNCT__ 110599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 110699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 110799cafbc1SBarry Smith { 110899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110999cafbc1SBarry Smith PetscErrorCode ierr; 111099cafbc1SBarry Smith 111199cafbc1SBarry Smith PetscFunctionBegin; 111299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 111399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 111499cafbc1SBarry Smith PetscFunctionReturn(0); 111599cafbc1SBarry Smith } 111699cafbc1SBarry Smith 111736032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 111836032a97SHong Zhang Input: isrow - distributed(parallel), 111936032a97SHong Zhang iscol_local - locally owned (seq) 112036032a97SHong Zhang */ 112199cafbc1SBarry Smith #undef __FUNCT__ 112236032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 112336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 11248f46ffcaSHong Zhang { 11258f46ffcaSHong Zhang PetscErrorCode ierr; 11268f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 11278f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 112836032a97SHong Zhang 112936032a97SHong Zhang PetscFunctionBegin; 11308f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 11318f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 11321098a8e8SHong Zhang if (sz1 > sz2) { 11331098a8e8SHong Zhang *flg = PETSC_FALSE; 11341098a8e8SHong Zhang PetscFunctionReturn(0); 11351098a8e8SHong Zhang } 11368f46ffcaSHong Zhang 11378f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 11388f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 11398f46ffcaSHong Zhang 11408f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 11418f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 11428f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 11438f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 11448f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 11458f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 11468f46ffcaSHong Zhang 11478f46ffcaSHong Zhang nmatch=0; 11488f46ffcaSHong Zhang k = 0; 11498f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 11508f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 11518f46ffcaSHong Zhang if (a1[i] == a2[j]) { 11528f46ffcaSHong Zhang k = j; nmatch++; 11538f46ffcaSHong Zhang break; 11548f46ffcaSHong Zhang } 11558f46ffcaSHong Zhang } 11568f46ffcaSHong Zhang } 11578f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 11588f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 11598f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 11608f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 11611098a8e8SHong Zhang if (nmatch < sz1) { 11621098a8e8SHong Zhang *flg = PETSC_FALSE; 11631098a8e8SHong Zhang } else { 11641098a8e8SHong Zhang *flg = PETSC_TRUE; 11651098a8e8SHong Zhang } 116636032a97SHong Zhang PetscFunctionReturn(0); 11678f46ffcaSHong Zhang } 116836032a97SHong Zhang 116936032a97SHong Zhang #undef __FUNCT__ 117036032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 117136032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 117236032a97SHong Zhang { 117336032a97SHong Zhang PetscErrorCode ierr; 117436032a97SHong Zhang IS iscol_local; 117536032a97SHong Zhang PetscInt csize; 117636032a97SHong Zhang PetscBool isequal; 117736032a97SHong Zhang 117836032a97SHong Zhang PetscFunctionBegin; 117936032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 118036032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 118136032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 118236032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 118336032a97SHong Zhang } else { 118436032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 118536032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 118636032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 11878f46ffcaSHong Zhang } 11888f46ffcaSHong Zhang 11898f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 119036032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 11918f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 11928f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 11938f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 11948f46ffcaSHong Zhang } 11958f46ffcaSHong Zhang PetscFunctionReturn(0); 11968f46ffcaSHong Zhang } 11978f46ffcaSHong Zhang 11988f46ffcaSHong Zhang #undef __FUNCT__ 11994a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1200dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1201a30f8f8cSSatish Balay { 1202a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1203dfbe8321SBarry Smith PetscErrorCode ierr; 1204a30f8f8cSSatish Balay 1205a30f8f8cSSatish Balay PetscFunctionBegin; 1206a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1207a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1208a30f8f8cSSatish Balay PetscFunctionReturn(0); 1209a30f8f8cSSatish Balay } 1210a30f8f8cSSatish Balay 12114a2ae208SSatish Balay #undef __FUNCT__ 12124a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1213dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1214a30f8f8cSSatish Balay { 1215a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1216a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1217dfbe8321SBarry Smith PetscErrorCode ierr; 1218a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1219a30f8f8cSSatish Balay 1220a30f8f8cSSatish Balay PetscFunctionBegin; 1221d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 122226fbe8dcSKarl Rupp 1223a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 122426fbe8dcSKarl Rupp 1225a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1226a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 122726fbe8dcSKarl Rupp 1228a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 122926fbe8dcSKarl Rupp 1230a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1231a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1232a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1233a30f8f8cSSatish Balay info->nz_used = isend[0]; 1234a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1235a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1236a30f8f8cSSatish Balay info->memory = isend[3]; 1237a30f8f8cSSatish Balay info->mallocs = isend[4]; 1238a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1239ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 124026fbe8dcSKarl Rupp 1241a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1242a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1243a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1244a30f8f8cSSatish Balay info->memory = irecv[3]; 1245a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1246a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1247ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 124826fbe8dcSKarl Rupp 1249a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1250a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1251a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1252a30f8f8cSSatish Balay info->memory = irecv[3]; 1253a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1254f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1255a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1256a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1257a30f8f8cSSatish Balay info->factor_mallocs = 0; 1258a30f8f8cSSatish Balay PetscFunctionReturn(0); 1259a30f8f8cSSatish Balay } 1260a30f8f8cSSatish Balay 12614a2ae208SSatish Balay #undef __FUNCT__ 12624a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1263ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1264a30f8f8cSSatish Balay { 1265a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1266d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1267dfbe8321SBarry Smith PetscErrorCode ierr; 1268a30f8f8cSSatish Balay 1269a30f8f8cSSatish Balay PetscFunctionBegin; 1270e98b92d7SKris Buschelman switch (op) { 1271512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1272e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 127328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1274a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1275e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12764e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12774e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1278e98b92d7SKris Buschelman break; 1279e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12804e0d8c25SBarry Smith a->roworiented = flg; 128126fbe8dcSKarl Rupp 12824e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12834e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1284e98b92d7SKris Buschelman break; 12854e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1286290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1287e98b92d7SKris Buschelman break; 1288e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12894e0d8c25SBarry Smith a->donotstash = flg; 1290e98b92d7SKris Buschelman break; 1291e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12924e0d8c25SBarry Smith a->ht_flag = flg; 1293e98b92d7SKris Buschelman break; 12949a4540c5SBarry Smith case MAT_HERMITIAN: 1295e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1296eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 129726fbe8dcSKarl Rupp 1298547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1299eeffb40dSHong Zhang break; 1300ffa07934SHong Zhang case MAT_SPD: 1301ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1302ffa07934SHong Zhang A->spd = flg; 1303ffa07934SHong Zhang if (flg) { 1304ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1305ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1306ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1307ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1308ffa07934SHong Zhang } 1309ffa07934SHong Zhang break; 131077e54ba9SKris Buschelman case MAT_SYMMETRIC: 1311eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1312eeffb40dSHong Zhang break; 131377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1314eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1315eeffb40dSHong Zhang break; 13169a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1317e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1318290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 131977e54ba9SKris Buschelman break; 1320d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 13214e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1322d0d4cfc2SHong Zhang break; 1323d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 13244e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1325d0d4cfc2SHong Zhang break; 1326d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 13274e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1328d0d4cfc2SHong Zhang break; 1329e98b92d7SKris Buschelman default: 1330e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1331a30f8f8cSSatish Balay } 1332a30f8f8cSSatish Balay PetscFunctionReturn(0); 1333a30f8f8cSSatish Balay } 1334a30f8f8cSSatish Balay 13354a2ae208SSatish Balay #undef __FUNCT__ 13368115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1337fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1338a30f8f8cSSatish Balay { 1339dfbe8321SBarry Smith PetscErrorCode ierr; 13406e111a19SKarl Rupp 1341a30f8f8cSSatish Balay PetscFunctionBegin; 1342815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1343999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1344fc4dec0aSBarry Smith } 13458115998fSBarry Smith PetscFunctionReturn(0); 1346a30f8f8cSSatish Balay } 1347a30f8f8cSSatish Balay 13484a2ae208SSatish Balay #undef __FUNCT__ 13494a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1350dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1351a30f8f8cSSatish Balay { 1352a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1353a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1354dfbe8321SBarry Smith PetscErrorCode ierr; 13555e90f9d9SHong Zhang PetscInt nv,m,n; 1356ace3abfcSBarry Smith PetscBool flg; 1357a30f8f8cSSatish Balay 1358a30f8f8cSSatish Balay PetscFunctionBegin; 1359a30f8f8cSSatish Balay if (ll != rr) { 1360b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1361e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1362a30f8f8cSSatish Balay } 1363b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1364b3bf805bSHong Zhang 13655e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1366e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1367b3bf805bSHong Zhang 13685e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1369e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13705e90f9d9SHong Zhang 1371ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13725e90f9d9SHong Zhang 13735e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 13740298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 13755e90f9d9SHong Zhang 13765e90f9d9SHong Zhang /* scale the diagonal part */ 1377a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1378a30f8f8cSSatish Balay 13795e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1380ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13810298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1382a30f8f8cSSatish Balay PetscFunctionReturn(0); 1383a30f8f8cSSatish Balay } 1384a30f8f8cSSatish Balay 13854a2ae208SSatish Balay #undef __FUNCT__ 13864a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1387dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1388a30f8f8cSSatish Balay { 1389f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1390dfbe8321SBarry Smith PetscErrorCode ierr; 1391a30f8f8cSSatish Balay 1392a30f8f8cSSatish Balay PetscFunctionBegin; 1393a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay PetscFunctionReturn(0); 1395a30f8f8cSSatish Balay } 1396a30f8f8cSSatish Balay 13976849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1398a30f8f8cSSatish Balay 13994a2ae208SSatish Balay #undef __FUNCT__ 14004a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1401ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1402a30f8f8cSSatish Balay { 1403a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1404a30f8f8cSSatish Balay Mat a,b,c,d; 1405ace3abfcSBarry Smith PetscBool flg; 1406dfbe8321SBarry Smith PetscErrorCode ierr; 1407a30f8f8cSSatish Balay 1408a30f8f8cSSatish Balay PetscFunctionBegin; 1409a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1410a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1411a30f8f8cSSatish Balay 1412a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1413abc0a331SBarry Smith if (flg) { 1414a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1415a30f8f8cSSatish Balay } 1416ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1417a30f8f8cSSatish Balay PetscFunctionReturn(0); 1418a30f8f8cSSatish Balay } 1419a30f8f8cSSatish Balay 14204a2ae208SSatish Balay #undef __FUNCT__ 14213c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14223c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14233c896bc6SHong Zhang { 14243c896bc6SHong Zhang PetscErrorCode ierr; 14253c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14263c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 14273c896bc6SHong Zhang 14283c896bc6SHong Zhang PetscFunctionBegin; 14293c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14303c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1431d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14323c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1433d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14343c896bc6SHong Zhang } else { 14353c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14363c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14373c896bc6SHong Zhang } 14383c896bc6SHong Zhang PetscFunctionReturn(0); 14393c896bc6SHong Zhang } 14403c896bc6SHong Zhang 14413c896bc6SHong Zhang #undef __FUNCT__ 14424994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 14434994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1444273d9f13SBarry Smith { 1445dfbe8321SBarry Smith PetscErrorCode ierr; 1446273d9f13SBarry Smith 1447273d9f13SBarry Smith PetscFunctionBegin; 1448535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1449273d9f13SBarry Smith PetscFunctionReturn(0); 1450273d9f13SBarry Smith } 1451a5e6ed63SBarry Smith 14524fe895cdSHong Zhang #undef __FUNCT__ 14534fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14544fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14554fe895cdSHong Zhang { 14564fe895cdSHong Zhang PetscErrorCode ierr; 14574fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 14584fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14594fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14604fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14614fe895cdSHong Zhang 14624fe895cdSHong Zhang PetscFunctionBegin; 14634fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14644fe895cdSHong Zhang PetscScalar alpha = a; 14654fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 14664fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1467c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 14688b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 14694fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 14704fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1471c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 14728b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1473a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1474ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1475ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1476ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1477ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 14784fe895cdSHong Zhang } else { 14794de5dceeSHong Zhang Mat B; 14804de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 14814de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1482d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14834de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 14844de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 14854de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 14864de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 14874de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 14884de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 14894de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 14904de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 14914de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 14924de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 14934de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 14944de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 14954de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 14964de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 14974de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1498d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14994de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 15004fe895cdSHong Zhang } 15014fe895cdSHong Zhang PetscFunctionReturn(0); 15024fe895cdSHong Zhang } 15034fe895cdSHong Zhang 1504a5e6ed63SBarry Smith #undef __FUNCT__ 1505a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 15061302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1507a5e6ed63SBarry Smith { 15086849ba73SBarry Smith PetscErrorCode ierr; 15091302d50aSBarry Smith PetscInt i; 1510*68906dc2SToby Isaac PetscBool flg,sorted; 1511a5e6ed63SBarry Smith 15126849ba73SBarry Smith PetscFunctionBegin; 1513*68906dc2SToby Isaac for (i = 0; i < n; i++) { 1514*68906dc2SToby Isaac ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr); 1515*68906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i); 1516*68906dc2SToby Isaac ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr); 1517*68906dc2SToby Isaac if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i); 1518*68906dc2SToby Isaac } 15194dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1520a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1521a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 15224dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 15234dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1524a5e6ed63SBarry Smith } 15254dcd73b1SHong Zhang } 1526a5e6ed63SBarry Smith PetscFunctionReturn(0); 1527a5e6ed63SBarry Smith } 1528a5e6ed63SBarry Smith 1529a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 15303964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1531a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1532a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1533a9d4b620SHong Zhang MatMult_MPISBAIJ, 153497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1535431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1536431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1537a30f8f8cSSatish Balay 0, 1538a30f8f8cSSatish Balay 0, 1539a30f8f8cSSatish Balay 0, 154097304618SKris Buschelman /* 10*/ 0, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 154341f059aeSBarry Smith MatSOR_MPISBAIJ, 1544a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 154597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1546a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1547a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1548a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1549a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 155097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1551a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1552a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1553a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1554d519adbfSMatthew Knepley /* 24*/ 0, 1555a30f8f8cSSatish Balay 0, 1556a30f8f8cSSatish Balay 0, 1557a30f8f8cSSatish Balay 0, 1558a30f8f8cSSatish Balay 0, 15594994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1560b5df2d14SHong Zhang 0, 1561a30f8f8cSSatish Balay 0, 1562a30f8f8cSSatish Balay 0, 1563a30f8f8cSSatish Balay 0, 1564d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay 0, 1567a30f8f8cSSatish Balay 0, 1568a30f8f8cSSatish Balay 0, 1569d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1570a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1571d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1572a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15733c896bc6SHong Zhang MatCopy_MPISBAIJ, 1574d519adbfSMatthew Knepley /* 44*/ 0, 1575a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1576a30f8f8cSSatish Balay 0, 1577a30f8f8cSSatish Balay 0, 1578a30f8f8cSSatish Balay 0, 1579f73d5cc4SBarry Smith /* 49*/ 0, 1580a30f8f8cSSatish Balay 0, 1581a30f8f8cSSatish Balay 0, 1582a30f8f8cSSatish Balay 0, 1583a30f8f8cSSatish Balay 0, 1584d519adbfSMatthew Knepley /* 54*/ 0, 1585a30f8f8cSSatish Balay 0, 1586a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1587a30f8f8cSSatish Balay 0, 1588a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 15898f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1590a30f8f8cSSatish Balay 0, 1591a30f8f8cSSatish Balay 0, 1592357abbc8SBarry Smith 0, 159324d5174aSHong Zhang 0, 1594d519adbfSMatthew Knepley /* 64*/ 0, 159524d5174aSHong Zhang 0, 159624d5174aSHong Zhang 0, 159724d5174aSHong Zhang 0, 159824d5174aSHong Zhang 0, 1599d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 160024d5174aSHong Zhang 0, 160197304618SKris Buschelman 0, 160297304618SKris Buschelman 0, 160397304618SKris Buschelman 0, 1604d519adbfSMatthew Knepley /* 74*/ 0, 160597304618SKris Buschelman 0, 160697304618SKris Buschelman 0, 160797304618SKris Buschelman 0, 160897304618SKris Buschelman 0, 1609d519adbfSMatthew Knepley /* 79*/ 0, 161097304618SKris Buschelman 0, 161197304618SKris Buschelman 0, 161297304618SKris Buschelman 0, 16135bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1614d519adbfSMatthew Knepley /* 84*/ 0, 1615865e5f61SKris Buschelman 0, 1616865e5f61SKris Buschelman 0, 1617865e5f61SKris Buschelman 0, 1618865e5f61SKris Buschelman 0, 1619d519adbfSMatthew Knepley /* 89*/ 0, 1620865e5f61SKris Buschelman 0, 1621865e5f61SKris Buschelman 0, 1622865e5f61SKris Buschelman 0, 1623865e5f61SKris Buschelman 0, 1624d519adbfSMatthew Knepley /* 94*/ 0, 1625865e5f61SKris Buschelman 0, 1626865e5f61SKris Buschelman 0, 162799cafbc1SBarry Smith 0, 162899cafbc1SBarry Smith 0, 1629d519adbfSMatthew Knepley /* 99*/ 0, 163099cafbc1SBarry Smith 0, 163199cafbc1SBarry Smith 0, 163299cafbc1SBarry Smith 0, 163399cafbc1SBarry Smith 0, 1634d519adbfSMatthew Knepley /*104*/ 0, 163599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1636d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1637d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 163895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 163995936485SShri Abhyankar /*109*/ 0, 164095936485SShri Abhyankar 0, 164195936485SShri Abhyankar 0, 164295936485SShri Abhyankar 0, 164395936485SShri Abhyankar 0, 164495936485SShri Abhyankar /*114*/ 0, 164595936485SShri Abhyankar 0, 164695936485SShri Abhyankar 0, 164795936485SShri Abhyankar 0, 164895936485SShri Abhyankar 0, 164995936485SShri Abhyankar /*119*/ 0, 165095936485SShri Abhyankar 0, 165195936485SShri Abhyankar 0, 16523964eb88SJed Brown 0, 16533964eb88SJed Brown 0, 16543964eb88SJed Brown /*124*/ 0, 16553964eb88SJed Brown 0, 16563964eb88SJed Brown 0, 16573964eb88SJed Brown 0, 16583964eb88SJed Brown 0, 16593964eb88SJed Brown /*129*/ 0, 16603964eb88SJed Brown 0, 16613964eb88SJed Brown 0, 16623964eb88SJed Brown 0, 16633964eb88SJed Brown 0, 16643964eb88SJed Brown /*134*/ 0, 16653964eb88SJed Brown 0, 16663964eb88SJed Brown 0, 16673964eb88SJed Brown 0, 16683964eb88SJed Brown 0, 16693964eb88SJed Brown /*139*/ 0, 1670f9426fe0SMark Adams 0, 167159f5e6ceSHong Zhang 0, 167259f5e6ceSHong Zhang 0, 167359f5e6ceSHong Zhang 0, 167459f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 167599cafbc1SBarry Smith }; 1676a30f8f8cSSatish Balay 16774a2ae208SSatish Balay #undef __FUNCT__ 16784a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 167911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1680a30f8f8cSSatish Balay { 1681a30f8f8cSSatish Balay PetscFunctionBegin; 1682a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1683a30f8f8cSSatish Balay PetscFunctionReturn(0); 1684a30f8f8cSSatish Balay } 1685a30f8f8cSSatish Balay 16864a2ae208SSatish Balay #undef __FUNCT__ 1687a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1688b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1689a23d5eceSKris Buschelman { 1690a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1691dfbe8321SBarry Smith PetscErrorCode ierr; 1692535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1693a23d5eceSKris Buschelman 1694a23d5eceSKris Buschelman PetscFunctionBegin; 169533d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 169626283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 169726283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1698e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1699899cda47SBarry Smith 1700a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1701d0f46423SBarry Smith mbs = B->rmap->n/bs; 1702d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1703c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1704a23d5eceSKris Buschelman 1705d0f46423SBarry Smith B->rmap->bs = bs; 1706a23d5eceSKris Buschelman b->bs2 = bs*bs; 1707a23d5eceSKris Buschelman b->mbs = mbs; 1708a23d5eceSKris Buschelman b->Mbs = Mbs; 1709de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1710de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1711a23d5eceSKris Buschelman 1712a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1713d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1714a23d5eceSKris Buschelman } 1715d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1716d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1717a23d5eceSKris Buschelman 1718d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1719d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1720a23d5eceSKris Buschelman 1721526dfc15SBarry Smith if (!B->preallocated) { 1722f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1723d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 17249c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 17253bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1726f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1727d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 17284aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 17293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1730ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1731526dfc15SBarry Smith } 1732a23d5eceSKris Buschelman 1733526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1734526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 173526fbe8dcSKarl Rupp 1736526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1737a23d5eceSKris Buschelman PetscFunctionReturn(0); 1738a23d5eceSKris Buschelman } 1739a23d5eceSKris Buschelman 1740dfb205c3SBarry Smith #undef __FUNCT__ 1741dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1742dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1743dfb205c3SBarry Smith { 1744dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1745dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1746dfb205c3SBarry Smith const PetscInt *JJ =0; 1747dfb205c3SBarry Smith PetscScalar *values=0; 1748dfb205c3SBarry Smith PetscErrorCode ierr; 1749dfb205c3SBarry Smith 1750dfb205c3SBarry Smith PetscFunctionBegin; 1751ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1752dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1753dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1754dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1755dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1756e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1757dfb205c3SBarry Smith m = B->rmap->n/bs; 1758dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1759dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1760dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1761dfb205c3SBarry Smith 1762dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1763dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1764dfb205c3SBarry Smith for (i=0; i<m; i++) { 1765dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1766dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1767dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1768dfb205c3SBarry Smith JJ = jj + ii[i]; 1769dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1770dfb205c3SBarry Smith if (*JJ >= cstart) break; 1771dfb205c3SBarry Smith JJ++; 1772dfb205c3SBarry Smith } 1773dfb205c3SBarry Smith d = 0; 1774dfb205c3SBarry Smith for (; j<nz; j++) { 1775dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1776dfb205c3SBarry Smith d++; 1777dfb205c3SBarry Smith } 1778dfb205c3SBarry Smith d_nnz[i] = d; 1779dfb205c3SBarry Smith o_nnz[i] = nz - d; 1780dfb205c3SBarry Smith } 1781dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1782dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1783dfb205c3SBarry Smith 1784dfb205c3SBarry Smith values = (PetscScalar*)V; 1785dfb205c3SBarry Smith if (!values) { 1786785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1787dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1788dfb205c3SBarry Smith } 1789dfb205c3SBarry Smith for (i=0; i<m; i++) { 1790dfb205c3SBarry Smith PetscInt row = i + rstart; 1791dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1792dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1793dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1794dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1795dfb205c3SBarry Smith } 1796dfb205c3SBarry Smith 1797dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1798dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1799dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18007827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1801dfb205c3SBarry Smith PetscFunctionReturn(0); 1802dfb205c3SBarry Smith } 1803dfb205c3SBarry Smith 18040bad9183SKris Buschelman /*MC 1805fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1806828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1807828413b8SBarry Smith the matrix is stored. 1808828413b8SBarry Smith 1809828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1810828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 18110bad9183SKris Buschelman 18120bad9183SKris Buschelman Options Database Keys: 18130bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 18140bad9183SKris Buschelman 18150bad9183SKris Buschelman Level: beginner 18160bad9183SKris Buschelman 18170bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 18180bad9183SKris Buschelman M*/ 18190bad9183SKris Buschelman 18208cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1821aa5a9175SDahai Guo 1822a23d5eceSKris Buschelman #undef __FUNCT__ 18234a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 18248cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1825b5df2d14SHong Zhang { 1826b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1827dfbe8321SBarry Smith PetscErrorCode ierr; 182894ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang PetscFunctionBegin; 1831b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1832b0a32e0cSBarry Smith B->data = (void*)b; 1833b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1834b5df2d14SHong Zhang 1835b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1836b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1837b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1838b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 183926fbe8dcSKarl Rupp 1840ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1841ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1842b5df2d14SHong Zhang 1843b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1844854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 1845b5df2d14SHong Zhang 1846b5df2d14SHong Zhang /* build cache for off array entries formed */ 1847ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 184826fbe8dcSKarl Rupp 1849b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 18500298fd71SBarry Smith b->colmap = NULL; 18510298fd71SBarry Smith b->garray = NULL; 1852b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1853b5df2d14SHong Zhang 1854b5df2d14SHong Zhang /* stuff used in block assembly */ 1855b5df2d14SHong Zhang b->barray = 0; 1856b5df2d14SHong Zhang 1857b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1858b5df2d14SHong Zhang b->lvec = 0; 1859b5df2d14SHong Zhang b->Mvctx = 0; 186040781036SHong Zhang b->slvec0 = 0; 186140781036SHong Zhang b->slvec0b = 0; 186240781036SHong Zhang b->slvec1 = 0; 186340781036SHong Zhang b->slvec1a = 0; 186440781036SHong Zhang b->slvec1b = 0; 186540781036SHong Zhang b->sMvctx = 0; 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1868b5df2d14SHong Zhang b->rowindices = 0; 1869b5df2d14SHong Zhang b->rowvalues = 0; 1870b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1871b5df2d14SHong Zhang 1872b5df2d14SHong Zhang /* hash table stuff */ 1873b5df2d14SHong Zhang b->ht = 0; 1874b5df2d14SHong Zhang b->hd = 0; 1875b5df2d14SHong Zhang b->ht_size = 0; 1876b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1877b5df2d14SHong Zhang b->ht_fact = 0; 1878b5df2d14SHong Zhang b->ht_total_ct = 0; 1879b5df2d14SHong Zhang b->ht_insert_ct = 0; 1880b5df2d14SHong Zhang 18817a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18827a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18837a868f3eSHong Zhang 188459ffdab8SBarry Smith b->in_loc = 0; 188559ffdab8SBarry Smith b->v_loc = 0; 188659ffdab8SBarry Smith b->n_loc = 0; 188794ae4db5SBarry Smith 1888bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1889bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1890bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1891bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1892bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1893bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 18946214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18956214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 18966214f412SHong Zhang #endif 1897aa5a9175SDahai Guo 189823ce1328SBarry Smith B->symmetric = PETSC_TRUE; 189923ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 190023ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 190123ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 190226fbe8dcSKarl Rupp 190317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 190494ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 190594ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 190694ae4db5SBarry Smith if (flg) { 190794ae4db5SBarry Smith PetscReal fact = 1.39; 190894ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 190994ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 191094ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 191194ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 191294ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 191394ae4db5SBarry Smith } 191494ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1915b5df2d14SHong Zhang PetscFunctionReturn(0); 1916b5df2d14SHong Zhang } 1917b5df2d14SHong Zhang 1918209238afSKris Buschelman /*MC 1919002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1920209238afSKris Buschelman 1921209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1922209238afSKris Buschelman and MATMPISBAIJ otherwise. 1923209238afSKris Buschelman 1924209238afSKris Buschelman Options Database Keys: 1925209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1926209238afSKris Buschelman 1927209238afSKris Buschelman Level: beginner 1928209238afSKris Buschelman 1929209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1930209238afSKris Buschelman M*/ 1931209238afSKris Buschelman 19324a2ae208SSatish Balay #undef __FUNCT__ 19334a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1934b5df2d14SHong Zhang /*@C 1935b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1936b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1937b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1938b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1939b5df2d14SHong Zhang 1940b5df2d14SHong Zhang Collective on Mat 1941b5df2d14SHong Zhang 1942b5df2d14SHong Zhang Input Parameters: 19431c4f3114SJed Brown + B - the matrix 1944bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1945bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1946b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1947b5df2d14SHong Zhang submatrix (same for all local rows) 1948b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19496d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 19500298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 195195742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1952b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1953b5df2d14SHong Zhang submatrix (same for all local rows). 1954b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1955c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 19560298fd71SBarry Smith (possibly different for each block row) or NULL. 1957b5df2d14SHong Zhang 1958b5df2d14SHong Zhang 1959b5df2d14SHong Zhang Options Database Keys: 1960b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1961b5df2d14SHong Zhang block calculations (much slower) 1962b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1963b5df2d14SHong Zhang 1964b5df2d14SHong Zhang Notes: 1965b5df2d14SHong Zhang 1966b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1967b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1968b5df2d14SHong Zhang 196949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197049a6f317SBarry Smith 1971b5df2d14SHong Zhang Storage Information: 1972b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1973b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1974b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1975b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1976b5df2d14SHong Zhang 1977b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1978b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 19790298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1980b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1981b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1982b5df2d14SHong Zhang 1983aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1984aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1985aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1986aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1987aa95bbe8SBarry Smith 1988b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1989b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1990b5df2d14SHong Zhang 1991b5df2d14SHong Zhang .vb 1992b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1993a4b1a0f6SJed Brown -------------------------- 1994c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1995c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1996c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1997a4b1a0f6SJed Brown -------------------------- 1998b5df2d14SHong Zhang .ve 1999b5df2d14SHong Zhang 2000b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2001b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 20026d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20036d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2004b5df2d14SHong Zhang 20056d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20066d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2007c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2008c2fc9fa9SBarry Smith 2009b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2010b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2011b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2012b5df2d14SHong Zhang matrices. 2013b5df2d14SHong Zhang 2014b5df2d14SHong Zhang Level: intermediate 2015b5df2d14SHong Zhang 2016b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2017b5df2d14SHong Zhang 2018ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2019b5df2d14SHong Zhang @*/ 20207087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2021b5df2d14SHong Zhang { 20224ac538c5SBarry Smith PetscErrorCode ierr; 2023b5df2d14SHong Zhang 2024b5df2d14SHong Zhang PetscFunctionBegin; 20256ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20266ba663aaSJed Brown PetscValidType(B,1); 20276ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 20284ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2029b5df2d14SHong Zhang PetscFunctionReturn(0); 2030b5df2d14SHong Zhang } 2031b5df2d14SHong Zhang 20324a2ae208SSatish Balay #undef __FUNCT__ 203369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2034a30f8f8cSSatish Balay /*@C 203569b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2036a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2037a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2038a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2039a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay Collective on MPI_Comm 2042a30f8f8cSSatish Balay 2043a30f8f8cSSatish Balay Input Parameters: 2044a30f8f8cSSatish Balay + comm - MPI communicator 2045bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2046bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2047a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2048a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2049a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2050a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2051a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2052a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2053a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2054a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2055a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2056a30f8f8cSSatish Balay submatrix (same for all local rows) 2057a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20586d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20590298fd71SBarry Smith (possibly different for each block block row) or NULL. 206095742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 206195742e49SBarry Smith set its value even if it is zero. 2062a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2063a30f8f8cSSatish Balay submatrix (same for all local rows). 2064a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2065a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 20660298fd71SBarry Smith each block row) or NULL. 2067a30f8f8cSSatish Balay 2068a30f8f8cSSatish Balay Output Parameter: 2069a30f8f8cSSatish Balay . A - the matrix 2070a30f8f8cSSatish Balay 2071a30f8f8cSSatish Balay Options Database Keys: 2072a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2073a30f8f8cSSatish Balay block calculations (much slower) 2074a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2075a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2076a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2077a30f8f8cSSatish Balay 2078175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2079ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2080175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2081175b88e8SBarry Smith 2082a30f8f8cSSatish Balay Notes: 2083d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20846d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2085d1be2dadSMatthew Knepley 2086a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2087a30f8f8cSSatish Balay (possibly both). 2088a30f8f8cSSatish Balay 2089a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2090a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2091a30f8f8cSSatish Balay 209249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 209349a6f317SBarry Smith 2094a30f8f8cSSatish Balay Storage Information: 2095a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2096a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2097a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2098a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2099a30f8f8cSSatish Balay 2100a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2101a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 21020298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2103a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2104a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2105a30f8f8cSSatish Balay 2106a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2107a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2108a30f8f8cSSatish Balay 2109a30f8f8cSSatish Balay .vb 2110a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2111a4b1a0f6SJed Brown -------------------------- 2112c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2113c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2114c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2115a4b1a0f6SJed Brown -------------------------- 2116a30f8f8cSSatish Balay .ve 2117a30f8f8cSSatish Balay 2118a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2119a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 21206d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 21216d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2122a30f8f8cSSatish Balay 21236d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 21246d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2125a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2126a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2127a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2128a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2129a30f8f8cSSatish Balay matrices. 2130a30f8f8cSSatish Balay 2131a30f8f8cSSatish Balay Level: intermediate 2132a30f8f8cSSatish Balay 2133a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2134a30f8f8cSSatish Balay 213569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2136a30f8f8cSSatish Balay @*/ 2137a30f8f8cSSatish Balay 213869b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2139a30f8f8cSSatish Balay { 21406849ba73SBarry Smith PetscErrorCode ierr; 21411302d50aSBarry Smith PetscMPIInt size; 2142a30f8f8cSSatish Balay 2143a30f8f8cSSatish Balay PetscFunctionBegin; 2144f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2145f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2146273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2147273d9f13SBarry Smith if (size > 1) { 2148b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2149b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2150273d9f13SBarry Smith } else { 2151273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2152273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2153273d9f13SBarry Smith } 2154a30f8f8cSSatish Balay PetscFunctionReturn(0); 2155a30f8f8cSSatish Balay } 2156a30f8f8cSSatish Balay 2157a30f8f8cSSatish Balay 21584a2ae208SSatish Balay #undef __FUNCT__ 21594a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2161a30f8f8cSSatish Balay { 2162a30f8f8cSSatish Balay Mat mat; 2163a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2164dfbe8321SBarry Smith PetscErrorCode ierr; 2165d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2166387bc808SHong Zhang PetscScalar *array; 2167a30f8f8cSSatish Balay 2168a30f8f8cSSatish Balay PetscFunctionBegin; 2169a30f8f8cSSatish Balay *newmat = 0; 217026fbe8dcSKarl Rupp 2171ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2172d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21737adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21741d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 21751e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21761e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2177e1b6402fSHong Zhang 2178d5f3da31SBarry Smith mat->factortype = matin->factortype; 2179273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 218082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21817fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21827fff6886SHong Zhang 2183b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2184a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2185a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2186a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2187a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2188a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2189a30f8f8cSSatish Balay 2190899cda47SBarry Smith 2191a30f8f8cSSatish Balay a->size = oldmat->size; 2192a30f8f8cSSatish Balay a->rank = oldmat->rank; 2193a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2194a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2195a30f8f8cSSatish Balay a->rowindices = 0; 2196a30f8f8cSSatish Balay a->rowvalues = 0; 2197a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2198a30f8f8cSSatish Balay a->barray = 0; 2199899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2200899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2201899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2202899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2203a30f8f8cSSatish Balay 2204a30f8f8cSSatish Balay /* hash table stuff */ 2205a30f8f8cSSatish Balay a->ht = 0; 2206a30f8f8cSSatish Balay a->hd = 0; 2207a30f8f8cSSatish Balay a->ht_size = 0; 2208a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2209a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2210a30f8f8cSSatish Balay a->ht_total_ct = 0; 2211a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2212a30f8f8cSSatish Balay 2213899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2214a30f8f8cSSatish Balay if (oldmat->colmap) { 2215a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2216a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2217a30f8f8cSSatish Balay #else 2218854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 22193bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 22201302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2221a30f8f8cSSatish Balay #endif 2222a30f8f8cSSatish Balay } else a->colmap = 0; 2223387bc808SHong Zhang 2224a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2225785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 22263bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 22271302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2228a30f8f8cSSatish Balay } else a->garray = 0; 2229a30f8f8cSSatish Balay 2230ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 22343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 223582327fa8SHong Zhang 223682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 22373bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 223882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 22393bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2240387bc808SHong Zhang 2241387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 22421ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2243778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2244778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22451ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22461ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2247778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22481ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 22493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 22503bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 22513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 22523bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 22533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2254387bc808SHong Zhang 2255387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2256387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2257387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 22583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 225982327fa8SHong Zhang 2260a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2262a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2264140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay *newmat = mat; 2266a30f8f8cSSatish Balay PetscFunctionReturn(0); 2267a30f8f8cSSatish Balay } 2268a30f8f8cSSatish Balay 22694a2ae208SSatish Balay #undef __FUNCT__ 22705bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2271112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 227295936485SShri Abhyankar { 227395936485SShri Abhyankar PetscErrorCode ierr; 227495936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 227595936485SShri Abhyankar PetscScalar *vals,*buf; 2276ce94432eSBarry Smith MPI_Comm comm; 227795936485SShri Abhyankar MPI_Status status; 2278adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2279adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 228095936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 22813059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 228295936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 228395936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 228495936485SShri Abhyankar int fd; 228595936485SShri Abhyankar 228695936485SShri Abhyankar PetscFunctionBegin; 2287c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2288c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2289ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22900298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 22910298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 229295936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 22933059b6faSBarry Smith if (bs < 0) bs = 1; 229495936485SShri Abhyankar 229595936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 229695936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 229795936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 22985872f025SBarry Smith if (!rank) { 229995936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 230095936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 230195936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 230295936485SShri Abhyankar } 230395936485SShri Abhyankar 230495936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 230595936485SShri Abhyankar 230695936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 230726fbe8dcSKarl Rupp M = header[1]; 230826fbe8dcSKarl Rupp N = header[2]; 230995936485SShri Abhyankar 231095936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 231195936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 231295936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 231395936485SShri Abhyankar 231495936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 231595936485SShri Abhyankar if (sizesset) { 231695936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 231795936485SShri Abhyankar } 2318abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2319abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 232095936485SShri Abhyankar 232195936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 232295936485SShri Abhyankar 232395936485SShri Abhyankar /* 232495936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 232595936485SShri Abhyankar divisible by the blocksize 232695936485SShri Abhyankar */ 232795936485SShri Abhyankar Mbs = M/bs; 232895936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 232995936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 233095936485SShri Abhyankar else Mbs++; 233195936485SShri Abhyankar if (extra_rows &&!rank) { 233295936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 233395936485SShri Abhyankar } 233495936485SShri Abhyankar 233595936485SShri Abhyankar /* determine ownership of all rows */ 233695936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 233795936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 233895936485SShri Abhyankar m = mbs*bs; 233995936485SShri Abhyankar } else { /* User Set */ 234095936485SShri Abhyankar m = newmat->rmap->n; 234195936485SShri Abhyankar mbs = m/bs; 234295936485SShri Abhyankar } 2343dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 23444dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 234595936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 234695936485SShri Abhyankar rowners[0] = 0; 234795936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 234895936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 234995936485SShri Abhyankar rstart = rowners[rank]; 235095936485SShri Abhyankar rend = rowners[rank+1]; 235195936485SShri Abhyankar 235295936485SShri Abhyankar /* distribute row lengths to all processors */ 2353785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 235495936485SShri Abhyankar if (!rank) { 2355854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 235695936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 235795936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2358785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 235995936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 236095936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 236195936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 236295936485SShri Abhyankar } else { 236395936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 236495936485SShri Abhyankar } 236595936485SShri Abhyankar 236695936485SShri Abhyankar if (!rank) { /* procs[0] */ 236795936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2368785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 236995936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 237095936485SShri Abhyankar for (i=0; i<size; i++) { 237195936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 237295936485SShri Abhyankar procsnz[i] += rowlengths[j]; 237395936485SShri Abhyankar } 237495936485SShri Abhyankar } 237595936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 237695936485SShri Abhyankar 237795936485SShri Abhyankar /* determine max buffer needed and allocate it */ 237895936485SShri Abhyankar maxnz = 0; 237995936485SShri Abhyankar for (i=0; i<size; i++) { 238095936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 238195936485SShri Abhyankar } 2382785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 238395936485SShri Abhyankar 238495936485SShri Abhyankar /* read in my part of the matrix column indices */ 238595936485SShri Abhyankar nz = procsnz[0]; 2386785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 238795936485SShri Abhyankar mycols = ibuf; 238895936485SShri Abhyankar if (size == 1) nz -= extra_rows; 238995936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 239026fbe8dcSKarl Rupp if (size == 1) { 239126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 239226fbe8dcSKarl Rupp } 239395936485SShri Abhyankar 239495936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 239595936485SShri Abhyankar for (i=1; i<size-1; i++) { 239695936485SShri Abhyankar nz = procsnz[i]; 239795936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 239895936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 239995936485SShri Abhyankar } 240095936485SShri Abhyankar /* read in the stuff for the last proc */ 240195936485SShri Abhyankar if (size != 1) { 240295936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 240395936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 240495936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 240595936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 240695936485SShri Abhyankar } 240795936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 240895936485SShri Abhyankar } else { /* procs[i], i>0 */ 240995936485SShri Abhyankar /* determine buffer space needed for message */ 241095936485SShri Abhyankar nz = 0; 241126fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2412785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 241395936485SShri Abhyankar mycols = ibuf; 241495936485SShri Abhyankar /* receive message of column indices*/ 241595936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 241695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 241795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 241895936485SShri Abhyankar } 241995936485SShri Abhyankar 242095936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2421dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2422dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 242395936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 242495936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 242595936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 242695936485SShri Abhyankar rowcount = 0; 242795936485SShri Abhyankar nzcount = 0; 242895936485SShri Abhyankar for (i=0; i<mbs; i++) { 242995936485SShri Abhyankar dcount = 0; 243095936485SShri Abhyankar odcount = 0; 243195936485SShri Abhyankar for (j=0; j<bs; j++) { 243295936485SShri Abhyankar kmax = locrowlens[rowcount]; 243395936485SShri Abhyankar for (k=0; k<kmax; k++) { 243495936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 243595936485SShri Abhyankar if (!mask[tmp]) { 243695936485SShri Abhyankar mask[tmp] = 1; 243795936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 243895936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 243995936485SShri Abhyankar } 244095936485SShri Abhyankar } 244195936485SShri Abhyankar rowcount++; 244295936485SShri Abhyankar } 244395936485SShri Abhyankar 244495936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 244595936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 244695936485SShri Abhyankar 244795936485SShri Abhyankar /* zero out the mask elements we set */ 244895936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 244995936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 245095936485SShri Abhyankar } 245195936485SShri Abhyankar if (!sizesset) { 245295936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 245395936485SShri Abhyankar } 245495936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 24556816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 245695936485SShri Abhyankar 245795936485SShri Abhyankar if (!rank) { 2458785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 245995936485SShri Abhyankar /* read in my part of the matrix numerical values */ 246095936485SShri Abhyankar nz = procsnz[0]; 246195936485SShri Abhyankar vals = buf; 246295936485SShri Abhyankar mycols = ibuf; 246395936485SShri Abhyankar if (size == 1) nz -= extra_rows; 246495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 246526fbe8dcSKarl Rupp if (size == 1) { 246626fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 246726fbe8dcSKarl Rupp } 246895936485SShri Abhyankar 246995936485SShri Abhyankar /* insert into matrix */ 247095936485SShri Abhyankar jj = rstart*bs; 247195936485SShri Abhyankar for (i=0; i<m; i++) { 247295936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 247395936485SShri Abhyankar mycols += locrowlens[i]; 247495936485SShri Abhyankar vals += locrowlens[i]; 247595936485SShri Abhyankar jj++; 247695936485SShri Abhyankar } 247795936485SShri Abhyankar 247895936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 247995936485SShri Abhyankar for (i=1; i<size-1; i++) { 248095936485SShri Abhyankar nz = procsnz[i]; 248195936485SShri Abhyankar vals = buf; 248295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 248395936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 248495936485SShri Abhyankar } 248595936485SShri Abhyankar /* the last proc */ 248695936485SShri Abhyankar if (size != 1) { 248795936485SShri Abhyankar nz = procsnz[i] - extra_rows; 248895936485SShri Abhyankar vals = buf; 248995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 249095936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 249195936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 249295936485SShri Abhyankar } 249395936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 249495936485SShri Abhyankar 249595936485SShri Abhyankar } else { 249695936485SShri Abhyankar /* receive numeric values */ 2497785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 249895936485SShri Abhyankar 249995936485SShri Abhyankar /* receive message of values*/ 250095936485SShri Abhyankar vals = buf; 250195936485SShri Abhyankar mycols = ibuf; 250295936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 250395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 250495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 250595936485SShri Abhyankar 250695936485SShri Abhyankar /* insert into matrix */ 250795936485SShri Abhyankar jj = rstart*bs; 250895936485SShri Abhyankar for (i=0; i<m; i++) { 250995936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 251095936485SShri Abhyankar mycols += locrowlens[i]; 251195936485SShri Abhyankar vals += locrowlens[i]; 251295936485SShri Abhyankar jj++; 251395936485SShri Abhyankar } 251495936485SShri Abhyankar } 251595936485SShri Abhyankar 251695936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 251795936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 251895936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 251995936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 252095936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 252195936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 252295936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 252395936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 252495936485SShri Abhyankar PetscFunctionReturn(0); 252595936485SShri Abhyankar } 252695936485SShri Abhyankar 252795936485SShri Abhyankar #undef __FUNCT__ 25284a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2529dcf5cc72SBarry Smith /*XXXXX@ 2530a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2531a30f8f8cSSatish Balay 2532a30f8f8cSSatish Balay Input Parameters: 2533a30f8f8cSSatish Balay . mat - the matrix 2534a30f8f8cSSatish Balay . fact - factor 2535a30f8f8cSSatish Balay 2536c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2537a30f8f8cSSatish Balay 2538a30f8f8cSSatish Balay Level: advanced 2539a30f8f8cSSatish Balay 2540a30f8f8cSSatish Balay Notes: 2541a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2542a30f8f8cSSatish Balay 2543a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2544a30f8f8cSSatish Balay 2545a30f8f8cSSatish Balay .seealso: MatSetOption() 2546dcf5cc72SBarry Smith @XXXXX*/ 2547dcf5cc72SBarry Smith 254824d5174aSHong Zhang 25494a2ae208SSatish Balay #undef __FUNCT__ 2550985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2551985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 255224d5174aSHong Zhang { 255324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2554f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2555ca54ac64SHong Zhang PetscReal atmp; 255687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2557dfbe8321SBarry Smith PetscErrorCode ierr; 25581302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25591302d50aSBarry Smith PetscMPIInt rank,size; 25601302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 256187828ca2SBarry Smith PetscScalar *va; 25628a1c53f2SBarry Smith MatScalar *ba; 2563f4c0e9e4SHong Zhang MPI_Status stat; 256424d5174aSHong Zhang 256524d5174aSHong Zhang PetscFunctionBegin; 2566e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 25670298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 25681ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2569f4c0e9e4SHong Zhang 2570ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2571ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2572f4c0e9e4SHong Zhang 2573d0f46423SBarry Smith bs = A->rmap->bs; 2574f4c0e9e4SHong Zhang mbs = a->mbs; 2575f4c0e9e4SHong Zhang Mbs = a->Mbs; 2576f4c0e9e4SHong Zhang ba = b->a; 2577f4c0e9e4SHong Zhang bi = b->i; 2578f4c0e9e4SHong Zhang bj = b->j; 2579f4c0e9e4SHong Zhang 2580f4c0e9e4SHong Zhang /* find ownerships */ 2581d0f46423SBarry Smith rowners_bs = A->rmap->range; 2582f4c0e9e4SHong Zhang 2583f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2584785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2585ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2586f4c0e9e4SHong Zhang 2587f4c0e9e4SHong Zhang /* row_max for B */ 2588b8475685SHong Zhang if (rank != size-1) { 2589f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2590f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2591f4c0e9e4SHong Zhang brow = bs*i; 2592f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2593f4c0e9e4SHong Zhang bcol = bs*(*bj); 2594f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2595ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 259604d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2597f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2598f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2599ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2600ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2601f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2602f4c0e9e4SHong Zhang } 2603f4c0e9e4SHong Zhang } 2604f4c0e9e4SHong Zhang bj++; 2605f4c0e9e4SHong Zhang } 2606f4c0e9e4SHong Zhang } 2607f4c0e9e4SHong Zhang 2608f4c0e9e4SHong Zhang /* send values to its owners */ 2609f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2610f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2611ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2612ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2613ca54ac64SHong Zhang } 2614f4c0e9e4SHong Zhang } 2615f4c0e9e4SHong Zhang 2616f4c0e9e4SHong Zhang /* receive values */ 2617ca54ac64SHong Zhang if (rank) { 2618f4c0e9e4SHong Zhang rvalues = work; 2619ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2620f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2621ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2622f4c0e9e4SHong Zhang /* process values */ 2623f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2624ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2625f4c0e9e4SHong Zhang } 2626f4c0e9e4SHong Zhang } 2627ca54ac64SHong Zhang } 2628f4c0e9e4SHong Zhang 26291ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2630ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 263124d5174aSHong Zhang PetscFunctionReturn(0); 263224d5174aSHong Zhang } 26332798e883SHong Zhang 26342798e883SHong Zhang #undef __FUNCT__ 263541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 263641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26372798e883SHong Zhang { 26382798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2639dfbe8321SBarry Smith PetscErrorCode ierr; 2640d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26413649974fSBarry Smith PetscScalar *x,*ptr,*from; 2642ffe4fb16SHong Zhang Vec bb1; 26433649974fSBarry Smith const PetscScalar *b; 2644ffe4fb16SHong Zhang 2645ffe4fb16SHong Zhang PetscFunctionBegin; 2646e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2647e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2648ffe4fb16SHong Zhang 2649a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 265041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2651a2b30743SBarry Smith PetscFunctionReturn(0); 2652a2b30743SBarry Smith } 2653a2b30743SBarry Smith 2654ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2655ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 265641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2657ffe4fb16SHong Zhang its--; 2658ffe4fb16SHong Zhang } 2659ffe4fb16SHong Zhang 2660ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2661ffe4fb16SHong Zhang while (its--) { 2662ffe4fb16SHong Zhang 2663ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2664ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2665ffe4fb16SHong Zhang 2666ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26671ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26681ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2669ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26701ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2671ffe4fb16SHong Zhang 2672efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2673ffe4fb16SHong Zhang 2674ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26751ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26763649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2677ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26781ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2679ffe4fb16SHong Zhang 2680ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2681fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2682ffe4fb16SHong Zhang 2683ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26841ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2685a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2686ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2687ffe4fb16SHong Zhang 2688ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2689ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2690ffe4fb16SHong Zhang 2691ffe4fb16SHong Zhang /* local diagonal sweep */ 269241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2693ffe4fb16SHong Zhang } 26946bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2695fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 269641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2697fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 269841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2699fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2700fa22f6d0SBarry Smith Vec xx1; 2701ace3abfcSBarry Smith PetscBool hasop; 270220f1ed55SBarry Smith const PetscScalar *diag; 2703887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 270420f1ed55SBarry Smith PetscInt i,n; 2705fa22f6d0SBarry Smith 2706fa22f6d0SBarry Smith if (!mat->xx1) { 2707fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2708fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2709fa22f6d0SBarry Smith } 2710fa22f6d0SBarry Smith xx1 = mat->xx1; 2711fa22f6d0SBarry Smith bb1 = mat->bb1; 2712fa22f6d0SBarry Smith 271341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2714fa22f6d0SBarry Smith 2715fa22f6d0SBarry Smith if (!mat->diag) { 2716effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27172a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2718fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2719fa22f6d0SBarry Smith } 2720fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2721fa22f6d0SBarry Smith 2722fa22f6d0SBarry Smith if (hasop) { 2723fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2724887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 272520f1ed55SBarry Smith } else { 272620f1ed55SBarry Smith /* 272720f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 272820f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2729887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 273020f1ed55SBarry Smith */ 273120f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27323649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27333649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 273420f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 273520f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2736887ee2caSBarry Smith if (omega == 1.0) { 273726fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 273820f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2739887ee2caSBarry Smith } else { 274026fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2741887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2742887ee2caSBarry Smith } 274320f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27443649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27453649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 274620f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 274720f1ed55SBarry Smith } 2748fa22f6d0SBarry Smith 2749fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2750fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2751fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2752fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2753fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2754fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2755fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2756fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2757fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2758fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2759effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2760fa22f6d0SBarry Smith 2761fa22f6d0SBarry Smith /* local sweep */ 276241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2763fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2764f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2765ffe4fb16SHong Zhang PetscFunctionReturn(0); 2766ffe4fb16SHong Zhang } 2767ffe4fb16SHong Zhang 2768ffe4fb16SHong Zhang #undef __FUNCT__ 276941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 277041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2771ffe4fb16SHong Zhang { 2772ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2773dfbe8321SBarry Smith PetscErrorCode ierr; 27742798e883SHong Zhang Vec lvec1,bb1; 27752798e883SHong Zhang 27762798e883SHong Zhang PetscFunctionBegin; 2777e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2778e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27792798e883SHong Zhang 2780c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 27812798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 278241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27832798e883SHong Zhang its--; 27842798e883SHong Zhang } 27852798e883SHong Zhang 27862798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27872798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27882798e883SHong Zhang while (its--) { 2789ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27902798e883SHong Zhang 27912798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27922798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2793efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27942798e883SHong Zhang 2795ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27962798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2797ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27982798e883SHong Zhang 27992798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2800efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 28012798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 28022798e883SHong Zhang 2803ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 28042798e883SHong Zhang 2805c14dc6b6SHong Zhang /* diagonal sweep */ 280641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 28072798e883SHong Zhang } 28086bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 28096bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 28106bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 28112798e883SHong Zhang PetscFunctionReturn(0); 28122798e883SHong Zhang } 28132798e883SHong Zhang 2814dfb205c3SBarry Smith #undef __FUNCT__ 2815dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2816dfb205c3SBarry Smith /*@ 2817dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2818dfb205c3SBarry Smith CSR format the local rows. 2819dfb205c3SBarry Smith 2820dfb205c3SBarry Smith Collective on MPI_Comm 2821dfb205c3SBarry Smith 2822dfb205c3SBarry Smith Input Parameters: 2823dfb205c3SBarry Smith + comm - MPI communicator 2824dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2825dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2826dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2827dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2828dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2829dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2830dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2831dfb205c3SBarry Smith . i - row indices 2832dfb205c3SBarry Smith . j - column indices 2833dfb205c3SBarry Smith - a - matrix values 2834dfb205c3SBarry Smith 2835dfb205c3SBarry Smith Output Parameter: 2836dfb205c3SBarry Smith . mat - the matrix 2837dfb205c3SBarry Smith 2838dfb205c3SBarry Smith Level: intermediate 2839dfb205c3SBarry Smith 2840dfb205c3SBarry Smith Notes: 2841dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2842dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2843dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2844dfb205c3SBarry Smith 2845dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2846dfb205c3SBarry Smith 2847dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2848dfb205c3SBarry Smith 2849dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 285069b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2851dfb205c3SBarry Smith @*/ 28527087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2853dfb205c3SBarry Smith { 2854dfb205c3SBarry Smith PetscErrorCode ierr; 2855dfb205c3SBarry Smith 2856dfb205c3SBarry Smith 2857dfb205c3SBarry Smith PetscFunctionBegin; 2858f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2859dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2860dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2861dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2862dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2863dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2864dfb205c3SBarry Smith PetscFunctionReturn(0); 2865dfb205c3SBarry Smith } 2866dfb205c3SBarry Smith 2867dfb205c3SBarry Smith 2868dfb205c3SBarry Smith #undef __FUNCT__ 2869dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2870dfb205c3SBarry Smith /*@C 2871dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2872dfb205c3SBarry Smith (the default parallel PETSc format). 2873dfb205c3SBarry Smith 2874dfb205c3SBarry Smith Collective on MPI_Comm 2875dfb205c3SBarry Smith 2876dfb205c3SBarry Smith Input Parameters: 28771c4f3114SJed Brown + B - the matrix 2878dfb205c3SBarry Smith . bs - the block size 2879dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2880dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2881dfb205c3SBarry Smith - v - optional values in the matrix 2882dfb205c3SBarry Smith 2883dfb205c3SBarry Smith Level: developer 2884dfb205c3SBarry Smith 2885dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2886dfb205c3SBarry Smith 288769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2888dfb205c3SBarry Smith @*/ 28897087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2890dfb205c3SBarry Smith { 28914ac538c5SBarry Smith PetscErrorCode ierr; 2892dfb205c3SBarry Smith 2893dfb205c3SBarry Smith PetscFunctionBegin; 28944ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2895dfb205c3SBarry Smith PetscFunctionReturn(0); 2896dfb205c3SBarry Smith } 2897dfb205c3SBarry Smith 2898de4b53ebSHong Zhang #undef __FUNCT__ 289910c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 290010c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 29014dcd73b1SHong Zhang { 29024dcd73b1SHong Zhang PetscErrorCode ierr; 290310c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 290410c56fdeSHong Zhang PetscInt *indx; 290510c56fdeSHong Zhang PetscScalar *values; 2906dfb205c3SBarry Smith 29074dcd73b1SHong Zhang PetscFunctionBegin; 29084dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 290910c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 291010c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 291110c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 291210c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 29134dcd73b1SHong Zhang 291410c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 291510c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 291610c56fdeSHong Zhang if (n == PETSC_DECIDE) { 291710c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 291810c56fdeSHong Zhang } 291910c56fdeSHong Zhang /* Check sum(n) = Nbs */ 292010c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 292110c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 292210c56fdeSHong Zhang 292310c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 292410c56fdeSHong Zhang rstart -= mbs; 29254dcd73b1SHong Zhang 29264dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 292710c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 2928e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 292910c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29304dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29314dcd73b1SHong Zhang nnz = nnz/bs; 29324dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29334dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29344dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29354dcd73b1SHong Zhang } 2936e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29374dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29384dcd73b1SHong Zhang 29394dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 294010c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29414dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 29424dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 29434dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29444dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29454dcd73b1SHong Zhang } 29464dcd73b1SHong Zhang 294710c56fdeSHong Zhang /* numeric phase */ 29484dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 294910c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29504dcd73b1SHong Zhang 2951e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29524dcd73b1SHong Zhang for (i=0; i<m; i++) { 29534dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29544dcd73b1SHong Zhang Ii = i + rstart; 295510c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29564dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29574dcd73b1SHong Zhang } 2958e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 295910c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296010c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29614dcd73b1SHong Zhang PetscFunctionReturn(0); 29624dcd73b1SHong Zhang } 2963