xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 68906dc2109f83832d799fd5dadb9926a752555a)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
239dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
240dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
241a30f8f8cSSatish Balay {
2420880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
243f15d580aSBarry Smith   const MatScalar *value;
244f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
245ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
246dfbe8321SBarry Smith   PetscErrorCode  ierr;
247899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
248899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
249d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2500880e062SHong Zhang 
251a30f8f8cSSatish Balay   PetscFunctionBegin;
2520880e062SHong Zhang   if (!barray) {
253785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2540880e062SHong Zhang     baij->barray = barray;
2550880e062SHong Zhang   }
2560880e062SHong Zhang 
2570880e062SHong Zhang   if (roworiented) {
2580880e062SHong Zhang     stepval = (n-1)*bs;
2590880e062SHong Zhang   } else {
2600880e062SHong Zhang     stepval = (m-1)*bs;
2610880e062SHong Zhang   }
2620880e062SHong Zhang   for (i=0; i<m; i++) {
2630880e062SHong Zhang     if (im[i] < 0) continue;
2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
265e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2660880e062SHong Zhang #endif
2670880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2680880e062SHong Zhang       row = im[i] - rstart;
2690880e062SHong Zhang       for (j=0; j<n; j++) {
270f3f98c53SJed Brown         if (im[i] > in[j]) {
271f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
272e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
273f3f98c53SJed Brown         }
2740880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2750880e062SHong Zhang         if ((roworiented) && (n == 1)) {
276f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2770880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
278f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2790880e062SHong Zhang         } else { /* Here a copy is required */
2800880e062SHong Zhang           if (roworiented) {
2810880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2820880e062SHong Zhang           } else {
2830880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2840880e062SHong Zhang           }
2850880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2860880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2870880e062SHong Zhang               *barray++ = *value++;
2880880e062SHong Zhang             }
2890880e062SHong Zhang           }
2900880e062SHong Zhang           barray -=bs2;
2910880e062SHong Zhang         }
2920880e062SHong Zhang 
2930880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
2940880e062SHong Zhang           col  = in[j] - cstart;
2950880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
29626fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
2972515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
298cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
2990880e062SHong Zhang #endif
3000880e062SHong Zhang         else {
3010880e062SHong Zhang           if (mat->was_assembled) {
3020880e062SHong Zhang             if (!baij->colmap) {
303ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3040880e062SHong Zhang             }
3050880e062SHong Zhang 
3062515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3070880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3081302d50aSBarry Smith             { PetscInt data;
3090880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
310e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3110880e062SHong Zhang             }
3120880e062SHong Zhang #else
313e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3140880e062SHong Zhang #endif
3150880e062SHong Zhang #endif
3160880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3170880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3180880e062SHong Zhang             col  = (col - 1)/bs;
3190880e062SHong Zhang #else
3200880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3210880e062SHong Zhang #endif
3220880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
323ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3240880e062SHong Zhang               col  = in[j];
3250880e062SHong Zhang             }
32626fbe8dcSKarl Rupp           } else col = in[j];
327e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3280880e062SHong Zhang         }
3290880e062SHong Zhang       }
3300880e062SHong Zhang     } else {
3314cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3320880e062SHong Zhang       if (!baij->donotstash) {
3330880e062SHong Zhang         if (roworiented) {
3340880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3350880e062SHong Zhang         } else {
3360880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3370880e062SHong Zhang         }
3380880e062SHong Zhang       }
3390880e062SHong Zhang     }
3400880e062SHong Zhang   }
3410880e062SHong Zhang   PetscFunctionReturn(0);
342a30f8f8cSSatish Balay }
343a30f8f8cSSatish Balay 
3444a2ae208SSatish Balay #undef __FUNCT__
3454a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3461302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
347a30f8f8cSSatish Balay {
348f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3496849ba73SBarry Smith   PetscErrorCode ierr;
350d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
351d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
352a30f8f8cSSatish Balay 
353a30f8f8cSSatish Balay   PetscFunctionBegin;
354a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
355e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
356e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
357a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
358a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
359a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
360e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
361e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
362a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
363a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
364c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
365a30f8f8cSSatish Balay         } else {
366a30f8f8cSSatish Balay           if (!baij->colmap) {
367ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
368a30f8f8cSSatish Balay           }
369a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
370a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
371a30f8f8cSSatish Balay           data--;
372a30f8f8cSSatish Balay #else
373a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
374a30f8f8cSSatish Balay #endif
375a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
376a30f8f8cSSatish Balay           else {
377a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
378e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
379a30f8f8cSSatish Balay           }
380a30f8f8cSSatish Balay         }
381a30f8f8cSSatish Balay       }
382f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
383a30f8f8cSSatish Balay   }
384a30f8f8cSSatish Balay   PetscFunctionReturn(0);
385a30f8f8cSSatish Balay }
386a30f8f8cSSatish Balay 
3874a2ae208SSatish Balay #undef __FUNCT__
3884a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
389dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
390a30f8f8cSSatish Balay {
391a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
392dfbe8321SBarry Smith   PetscErrorCode ierr;
393a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
394a30f8f8cSSatish Balay 
395a30f8f8cSSatish Balay   PetscFunctionBegin;
396a30f8f8cSSatish Balay   if (baij->size == 1) {
397a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
398a30f8f8cSSatish Balay   } else {
399a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
400785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
401a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
402a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
403a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
404a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
405ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4068f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
407a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4080b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4090b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4100b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4110b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
412899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
413d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4140b8dc8d2SHong Zhang       MatScalar    *v;
4150b8dc8d2SHong Zhang 
416dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
417d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4180b8dc8d2SHong Zhang       /* Amat */
4190b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4200b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4210b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4220b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4230b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4240b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4250b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4260b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4270b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4280b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4290b8dc8d2SHong Zhang               /* non-diagonal block */
4300b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4310b8dc8d2SHong Zhang             }
4320b8dc8d2SHong Zhang           }
4330b8dc8d2SHong Zhang         }
4340b8dc8d2SHong Zhang       }
4350b8dc8d2SHong Zhang       /* Bmat */
4360b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4370b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4380b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4390b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4400b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4410b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4420b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4430b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4440b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4450b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4460b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
451ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4520b8dc8d2SHong Zhang       *norm = 0.0;
453d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4540b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4550b8dc8d2SHong Zhang       }
45674ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
457f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
458a30f8f8cSSatish Balay   }
459a30f8f8cSSatish Balay   PetscFunctionReturn(0);
460a30f8f8cSSatish Balay }
461a30f8f8cSSatish Balay 
4624a2ae208SSatish Balay #undef __FUNCT__
4634a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
464dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
465a30f8f8cSSatish Balay {
466a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
467dfbe8321SBarry Smith   PetscErrorCode ierr;
4681302d50aSBarry Smith   PetscInt       nstash,reallocs;
469a30f8f8cSSatish Balay   InsertMode     addv;
470a30f8f8cSSatish Balay 
471a30f8f8cSSatish Balay   PetscFunctionBegin;
47226fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
473a30f8f8cSSatish Balay 
474a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
475ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
476ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
477a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
478a30f8f8cSSatish Balay 
479d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4801e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
481a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4821e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
483a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4841e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
485a30f8f8cSSatish Balay   PetscFunctionReturn(0);
486a30f8f8cSSatish Balay }
487a30f8f8cSSatish Balay 
4884a2ae208SSatish Balay #undef __FUNCT__
4894a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
490dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
491a30f8f8cSSatish Balay {
492a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
493a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
4946849ba73SBarry Smith   PetscErrorCode ierr;
49513f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
496e44c0bd4SBarry Smith   PetscInt       *row,*col;
497ace3abfcSBarry Smith   PetscBool      other_disassembled;
49813f74950SBarry Smith   PetscMPIInt    n;
499ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
500a30f8f8cSSatish Balay   MatScalar      *val;
501a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
502a30f8f8cSSatish Balay 
50391c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
504a30f8f8cSSatish Balay   PetscFunctionBegin;
5054cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
506a30f8f8cSSatish Balay     while (1) {
507a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
508a30f8f8cSSatish Balay       if (!flg) break;
509a30f8f8cSSatish Balay 
510a30f8f8cSSatish Balay       for (i=0; i<n;) {
511a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
51226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
51326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
51426fbe8dcSKarl Rupp         }
515a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
516a30f8f8cSSatish Balay         else       ncols = n-i;
517a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
518dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
519a30f8f8cSSatish Balay         i    = j;
520a30f8f8cSSatish Balay       }
521a30f8f8cSSatish Balay     }
522a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
523a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
524a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
525a30f8f8cSSatish Balay        restore the original flags */
526a30f8f8cSSatish Balay     r1 = baij->roworiented;
527a30f8f8cSSatish Balay     r2 = a->roworiented;
52891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
52926fbe8dcSKarl Rupp 
530a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
531a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
53226fbe8dcSKarl Rupp 
53391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
534a30f8f8cSSatish Balay     while (1) {
535a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
536a30f8f8cSSatish Balay       if (!flg) break;
537a30f8f8cSSatish Balay 
538a30f8f8cSSatish Balay       for (i=0; i<n;) {
539a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
54026fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
54126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
54226fbe8dcSKarl Rupp         }
543a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
544a30f8f8cSSatish Balay         else       ncols = n-i;
545dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
546a30f8f8cSSatish Balay         i    = j;
547a30f8f8cSSatish Balay       }
548a30f8f8cSSatish Balay     }
549a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
55026fbe8dcSKarl Rupp 
551a30f8f8cSSatish Balay     baij->roworiented = r1;
552a30f8f8cSSatish Balay     a->roworiented    = r2;
55326fbe8dcSKarl Rupp 
55491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
555a30f8f8cSSatish Balay   }
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
558a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
561a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
562a30f8f8cSSatish Balay   /*
563a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
564a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
565a30f8f8cSSatish Balay   */
566a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
567ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
568a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
569ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay     }
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
57440781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
575a30f8f8cSSatish Balay   }
576a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
577a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
578a30f8f8cSSatish Balay 
57974ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
58026fbe8dcSKarl Rupp 
581a30f8f8cSSatish Balay   baij->rowvalues = 0;
5824f9cfa9eSBarry Smith 
5834f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
5844f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
585e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
58609e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
587e56f5c9eSBarry Smith   }
588a30f8f8cSSatish Balay   PetscFunctionReturn(0);
589a30f8f8cSSatish Balay }
590a30f8f8cSSatish Balay 
5917da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
592dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
5939804daf3SBarry Smith #include <petscdraw.h>
5944a2ae208SSatish Balay #undef __FUNCT__
5954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
5966849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
597a30f8f8cSSatish Balay {
598a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
599dfbe8321SBarry Smith   PetscErrorCode    ierr;
600d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6017da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
602ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
603b0a32e0cSBarry Smith   PetscViewer       sviewer;
604f3ef73ceSBarry Smith   PetscViewerFormat format;
605a30f8f8cSSatish Balay 
606a30f8f8cSSatish Balay   PetscFunctionBegin;
607251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
608251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
60932077d6dSBarry Smith   if (iascii) {
610b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
611456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
612a30f8f8cSSatish Balay       MatInfo info;
613ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
614a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6157b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6167b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
617a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
618e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
619a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
620e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
621b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6227b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
62307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
624a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       PetscFunctionReturn(0);
626fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
62777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       PetscFunctionReturn(0);
629c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
630c1490034SHong Zhang       PetscFunctionReturn(0);
631a30f8f8cSSatish Balay     }
632a30f8f8cSSatish Balay   }
633a30f8f8cSSatish Balay 
634a30f8f8cSSatish Balay   if (isdraw) {
635b0a32e0cSBarry Smith     PetscDraw draw;
636ace3abfcSBarry Smith     PetscBool isnull;
637b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
638b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
639a30f8f8cSSatish Balay   }
640a30f8f8cSSatish Balay 
6417da1fb6eSBarry Smith   {
642a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
643a30f8f8cSSatish Balay     Mat          A;
64465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
64565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
646d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
647a30f8f8cSSatish Balay     MatScalar    *a;
6483e219373SBarry Smith     const char   *matname;
649a30f8f8cSSatish Balay 
650f204ca49SKris Buschelman     /* Should this be the same type as mat? */
651ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
652a30f8f8cSSatish Balay     if (!rank) {
653f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
654a30f8f8cSSatish Balay     } else {
655f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
656a30f8f8cSSatish Balay     }
657f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6580298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6592b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6603bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
661a30f8f8cSSatish Balay 
662a30f8f8cSSatish Balay     /* copy over the A part */
66365d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
664a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
665785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
666a30f8f8cSSatish Balay 
667a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
668e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
66926fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
670a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
671e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
672a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
673dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
67426fbe8dcSKarl Rupp           col++;
67526fbe8dcSKarl Rupp           a += bs;
676a30f8f8cSSatish Balay         }
677a30f8f8cSSatish Balay       }
678a30f8f8cSSatish Balay     }
679a30f8f8cSSatish Balay     /* copy over the B part */
68065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68165d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
682a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
683e9f7bc9eSHong Zhang 
684e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
686a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
687a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
688a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
689799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
69026fbe8dcSKarl Rupp           col++;
69126fbe8dcSKarl Rupp           a += bs;
692a30f8f8cSSatish Balay         }
693a30f8f8cSSatish Balay       }
694a30f8f8cSSatish Balay     }
695a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
696a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
697a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
698a30f8f8cSSatish Balay     /*
699a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
700b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
701a30f8f8cSSatish Balay     */
702b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
703ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
7043e219373SBarry Smith     if (!rank) {
705ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
7067da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     }
708b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7096bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay   PetscFunctionReturn(0);
712a30f8f8cSSatish Balay }
713a30f8f8cSSatish Balay 
7144a2ae208SSatish Balay #undef __FUNCT__
7154a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
716dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
717a30f8f8cSSatish Balay {
718dfbe8321SBarry Smith   PetscErrorCode ierr;
719ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
720a30f8f8cSSatish Balay 
721a30f8f8cSSatish Balay   PetscFunctionBegin;
722251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
723251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
724251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
725251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
72632077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
727a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
728a30f8f8cSSatish Balay   }
729a30f8f8cSSatish Balay   PetscFunctionReturn(0);
730a30f8f8cSSatish Balay }
731a30f8f8cSSatish Balay 
7324a2ae208SSatish Balay #undef __FUNCT__
7334a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
734dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
735a30f8f8cSSatish Balay {
736a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
737dfbe8321SBarry Smith   PetscErrorCode ierr;
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay   PetscFunctionBegin;
740a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
741d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
742a30f8f8cSSatish Balay #endif
743a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
744a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7456bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7466bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
747a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7486bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
749a30f8f8cSSatish Balay #else
75005b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
751a30f8f8cSSatish Balay #endif
75205b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7536bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7546bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7556bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7566bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7576bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7586bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7596bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7606bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7615755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
76205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
76305b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7646bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7656bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
767ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
76805b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
769a30f8f8cSSatish Balay #endif
77059ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
77159ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
772899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
773bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
774901853e0SKris Buschelman 
775dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
776bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
777bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
778bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
779bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
780bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
7816214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
7826214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
7836214f412SHong Zhang #endif
784a30f8f8cSSatish Balay   PetscFunctionReturn(0);
785a30f8f8cSSatish Balay }
786a30f8f8cSSatish Balay 
7874a2ae208SSatish Balay #undef __FUNCT__
788547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
789547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
790547795f9SHong Zhang {
791547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
792547795f9SHong Zhang   PetscErrorCode ierr;
793547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
794547795f9SHong Zhang   PetscScalar    *x,*from;
795547795f9SHong Zhang 
796547795f9SHong Zhang   PetscFunctionBegin;
797547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
798e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
799547795f9SHong Zhang 
800547795f9SHong Zhang   /* diagonal part */
801547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
802547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
803547795f9SHong Zhang 
804547795f9SHong Zhang   /* subdiagonal part */
805547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
806547795f9SHong Zhang 
807547795f9SHong Zhang   /* copy x into the vec slvec0 */
808547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
809547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
810547795f9SHong Zhang 
811547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
812547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
813547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
814547795f9SHong Zhang 
815547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
816547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
817547795f9SHong Zhang   /* supperdiagonal part */
818547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
819547795f9SHong Zhang   PetscFunctionReturn(0);
820547795f9SHong Zhang }
821547795f9SHong Zhang 
822547795f9SHong Zhang #undef __FUNCT__
823a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
824dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
825a9d4b620SHong Zhang {
826a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
827dfbe8321SBarry Smith   PetscErrorCode    ierr;
828d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
829d9ca1df4SBarry Smith   PetscScalar       *from;
830d9ca1df4SBarry Smith   const PetscScalar *x;
831a9d4b620SHong Zhang 
832a9d4b620SHong Zhang   PetscFunctionBegin;
833a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
834e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
835a9d4b620SHong Zhang 
836a9d4b620SHong Zhang   /* diagonal part */
837a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
838fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
839a9d4b620SHong Zhang 
840a9d4b620SHong Zhang   /* subdiagonal part */
841a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
842fc165ae2SBarry Smith 
843a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8441ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
845d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
846a9d4b620SHong Zhang 
847fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
848fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
849d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
850fc165ae2SBarry Smith 
851fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
852ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
853a9d4b620SHong Zhang   /* supperdiagonal part */
854a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
855a9d4b620SHong Zhang   PetscFunctionReturn(0);
856a9d4b620SHong Zhang }
857a9d4b620SHong Zhang 
858a9d4b620SHong Zhang #undef __FUNCT__
85940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
860dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
861a30f8f8cSSatish Balay {
862a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
863dfbe8321SBarry Smith   PetscErrorCode ierr;
8641302d50aSBarry Smith   PetscInt       nt;
865a30f8f8cSSatish Balay 
866a30f8f8cSSatish Balay   PetscFunctionBegin;
867a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
868e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
869e7e72b3dSBarry Smith 
870a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
871e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
87265d70643SHong Zhang 
873ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
874b941877fSHong Zhang   /* do diagonal part */
875b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
876b941877fSHong Zhang   /* do supperdiagonal part */
877ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
878b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
879b941877fSHong Zhang   /* do subdiagonal part */
880b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
881ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
882ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
883a30f8f8cSSatish Balay   PetscFunctionReturn(0);
884a30f8f8cSSatish Balay }
885a30f8f8cSSatish Balay 
8864a2ae208SSatish Balay #undef __FUNCT__
8874a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
888dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
889a30f8f8cSSatish Balay {
890de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
891dfbe8321SBarry Smith   PetscErrorCode    ierr;
892d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
893d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
894d9ca1df4SBarry Smith   const PetscScalar *x;
895a9d4b620SHong Zhang 
896a9d4b620SHong Zhang   PetscFunctionBegin;
897a9d4b620SHong Zhang   /*
898ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
8990ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
900a9d4b620SHong Zhang   */
901a9d4b620SHong Zhang   /* diagonal part */
902a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9032dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
904a9d4b620SHong Zhang 
905a9d4b620SHong Zhang   /* subdiagonal part */
906a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
907a9d4b620SHong Zhang 
908a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9091ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
910d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
911a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9121ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
915d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
916ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
917a9d4b620SHong Zhang 
918a9d4b620SHong Zhang   /* supperdiagonal part */
919a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
920a9d4b620SHong Zhang   PetscFunctionReturn(0);
921a9d4b620SHong Zhang }
922a9d4b620SHong Zhang 
923a9d4b620SHong Zhang #undef __FUNCT__
924a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
925dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
926a9d4b620SHong Zhang {
927a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
928dfbe8321SBarry Smith   PetscErrorCode ierr;
929a30f8f8cSSatish Balay 
930a30f8f8cSSatish Balay   PetscFunctionBegin;
931ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
932b941877fSHong Zhang   /* do diagonal part */
933b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
934b941877fSHong Zhang   /* do supperdiagonal part */
935ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
936de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
937de8b6608SHong Zhang 
938b941877fSHong Zhang   /* do subdiagonal part */
939a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
940ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
941ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
942a30f8f8cSSatish Balay   PetscFunctionReturn(0);
943a30f8f8cSSatish Balay }
944a30f8f8cSSatish Balay 
945a30f8f8cSSatish Balay /*
946a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
947a30f8f8cSSatish Balay    diagonal block
948a30f8f8cSSatish Balay */
9494a2ae208SSatish Balay #undef __FUNCT__
9504a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
951dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
952a30f8f8cSSatish Balay {
953a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
954dfbe8321SBarry Smith   PetscErrorCode ierr;
955a30f8f8cSSatish Balay 
956a30f8f8cSSatish Balay   PetscFunctionBegin;
957e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
958a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
959a30f8f8cSSatish Balay   PetscFunctionReturn(0);
960a30f8f8cSSatish Balay }
961a30f8f8cSSatish Balay 
9624a2ae208SSatish Balay #undef __FUNCT__
9634a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
964f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
965a30f8f8cSSatish Balay {
966a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
967dfbe8321SBarry Smith   PetscErrorCode ierr;
968a30f8f8cSSatish Balay 
969a30f8f8cSSatish Balay   PetscFunctionBegin;
970f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
971f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
972a30f8f8cSSatish Balay   PetscFunctionReturn(0);
973a30f8f8cSSatish Balay }
974a30f8f8cSSatish Balay 
9754a2ae208SSatish Balay #undef __FUNCT__
9764a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9771302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
978a30f8f8cSSatish Balay {
979d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
980d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
981d0d4cfc2SHong Zhang   PetscErrorCode ierr;
982d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
983d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
984899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
985d0d4cfc2SHong Zhang 
986a30f8f8cSSatish Balay   PetscFunctionBegin;
987e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
988d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
989d0d4cfc2SHong Zhang 
990d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
991d0d4cfc2SHong Zhang     /*
992d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
993d0d4cfc2SHong Zhang     */
994d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
995d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
996d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
997d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
998d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
99926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1000d0d4cfc2SHong Zhang     }
1001dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1002d0d4cfc2SHong Zhang   }
1003d0d4cfc2SHong Zhang 
1004e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1005d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1006d0d4cfc2SHong Zhang 
1007d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1008d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1009d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1010d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1011d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1012d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1013d0d4cfc2SHong Zhang 
1014d0d4cfc2SHong Zhang   cmap = mat->garray;
1015d0d4cfc2SHong Zhang   if (v  || idx) {
1016d0d4cfc2SHong Zhang     if (nztot) {
1017d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1018d0d4cfc2SHong Zhang       PetscInt imark = -1;
1019d0d4cfc2SHong Zhang       if (v) {
1020d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1021d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1022d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1023d0d4cfc2SHong Zhang           else break;
1024d0d4cfc2SHong Zhang         }
1025d0d4cfc2SHong Zhang         imark = i;
1026d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1027d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1028d0d4cfc2SHong Zhang       }
1029d0d4cfc2SHong Zhang       if (idx) {
1030d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1031d0d4cfc2SHong Zhang         if (imark > -1) {
1032d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1033d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1034d0d4cfc2SHong Zhang           }
1035d0d4cfc2SHong Zhang         } else {
1036d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
103726fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1038d0d4cfc2SHong Zhang             else break;
1039d0d4cfc2SHong Zhang           }
1040d0d4cfc2SHong Zhang           imark = i;
1041d0d4cfc2SHong Zhang         }
1042d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1043d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1044d0d4cfc2SHong Zhang       }
1045d0d4cfc2SHong Zhang     } else {
1046d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1047d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1048d0d4cfc2SHong Zhang     }
1049d0d4cfc2SHong Zhang   }
1050d0d4cfc2SHong Zhang   *nz  = nztot;
1051d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1052d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1053a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1054a30f8f8cSSatish Balay }
1055a30f8f8cSSatish Balay 
10564a2ae208SSatish Balay #undef __FUNCT__
10574a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10581302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1059a30f8f8cSSatish Balay {
1060a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1061a30f8f8cSSatish Balay 
1062a30f8f8cSSatish Balay   PetscFunctionBegin;
1063e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1064a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1065a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1066a30f8f8cSSatish Balay }
1067a30f8f8cSSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
1069d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1070d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1071d0d4cfc2SHong Zhang {
1072d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1073d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1074d0d4cfc2SHong Zhang 
1075d0d4cfc2SHong Zhang   PetscFunctionBegin;
1076d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1077d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1078d0d4cfc2SHong Zhang }
1079d0d4cfc2SHong Zhang #undef __FUNCT__
1080d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1081d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1082d0d4cfc2SHong Zhang {
1083d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1084d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1085d0d4cfc2SHong Zhang 
1086d0d4cfc2SHong Zhang   PetscFunctionBegin;
1087d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1088d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1089d0d4cfc2SHong Zhang }
1090d0d4cfc2SHong Zhang 
1091d0d4cfc2SHong Zhang #undef __FUNCT__
109299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
109399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
109499cafbc1SBarry Smith {
109599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
109699cafbc1SBarry Smith   PetscErrorCode ierr;
109799cafbc1SBarry Smith 
109899cafbc1SBarry Smith   PetscFunctionBegin;
109999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
110099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
110199cafbc1SBarry Smith   PetscFunctionReturn(0);
110299cafbc1SBarry Smith }
110399cafbc1SBarry Smith 
110499cafbc1SBarry Smith #undef __FUNCT__
110599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
110699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
110799cafbc1SBarry Smith {
110899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110999cafbc1SBarry Smith   PetscErrorCode ierr;
111099cafbc1SBarry Smith 
111199cafbc1SBarry Smith   PetscFunctionBegin;
111299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
111399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
111499cafbc1SBarry Smith   PetscFunctionReturn(0);
111599cafbc1SBarry Smith }
111699cafbc1SBarry Smith 
111736032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
111836032a97SHong Zhang    Input: isrow       - distributed(parallel),
111936032a97SHong Zhang           iscol_local - locally owned (seq)
112036032a97SHong Zhang */
112199cafbc1SBarry Smith #undef __FUNCT__
112236032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
112336032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
11248f46ffcaSHong Zhang {
11258f46ffcaSHong Zhang   PetscErrorCode ierr;
11268f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
11278f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
112836032a97SHong Zhang 
112936032a97SHong Zhang   PetscFunctionBegin;
11308f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
11318f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
11321098a8e8SHong Zhang   if (sz1 > sz2) {
11331098a8e8SHong Zhang     *flg = PETSC_FALSE;
11341098a8e8SHong Zhang     PetscFunctionReturn(0);
11351098a8e8SHong Zhang   }
11368f46ffcaSHong Zhang 
11378f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
11388f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
11398f46ffcaSHong Zhang 
11408f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
11418f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
11428f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
11438f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
11448f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
11458f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
11468f46ffcaSHong Zhang 
11478f46ffcaSHong Zhang   nmatch=0;
11488f46ffcaSHong Zhang   k     = 0;
11498f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
11508f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
11518f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
11528f46ffcaSHong Zhang         k = j; nmatch++;
11538f46ffcaSHong Zhang         break;
11548f46ffcaSHong Zhang       }
11558f46ffcaSHong Zhang     }
11568f46ffcaSHong Zhang   }
11578f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
11588f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
11598f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
11608f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
11611098a8e8SHong Zhang   if (nmatch < sz1) {
11621098a8e8SHong Zhang     *flg = PETSC_FALSE;
11631098a8e8SHong Zhang   } else {
11641098a8e8SHong Zhang     *flg = PETSC_TRUE;
11651098a8e8SHong Zhang   }
116636032a97SHong Zhang   PetscFunctionReturn(0);
11678f46ffcaSHong Zhang }
116836032a97SHong Zhang 
116936032a97SHong Zhang #undef __FUNCT__
117036032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
117136032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
117236032a97SHong Zhang {
117336032a97SHong Zhang   PetscErrorCode ierr;
117436032a97SHong Zhang   IS             iscol_local;
117536032a97SHong Zhang   PetscInt       csize;
117636032a97SHong Zhang   PetscBool      isequal;
117736032a97SHong Zhang 
117836032a97SHong Zhang   PetscFunctionBegin;
117936032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
118036032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
118136032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
118236032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
118336032a97SHong Zhang   } else {
118436032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
118536032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
118636032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
11878f46ffcaSHong Zhang   }
11888f46ffcaSHong Zhang 
11898f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
119036032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
11918f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
11928f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
11938f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
11948f46ffcaSHong Zhang   }
11958f46ffcaSHong Zhang   PetscFunctionReturn(0);
11968f46ffcaSHong Zhang }
11978f46ffcaSHong Zhang 
11988f46ffcaSHong Zhang #undef __FUNCT__
11994a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1200dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1201a30f8f8cSSatish Balay {
1202a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1203dfbe8321SBarry Smith   PetscErrorCode ierr;
1204a30f8f8cSSatish Balay 
1205a30f8f8cSSatish Balay   PetscFunctionBegin;
1206a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1207a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1208a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1209a30f8f8cSSatish Balay }
1210a30f8f8cSSatish Balay 
12114a2ae208SSatish Balay #undef __FUNCT__
12124a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1213dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1214a30f8f8cSSatish Balay {
1215a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1216a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1217dfbe8321SBarry Smith   PetscErrorCode ierr;
1218a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1219a30f8f8cSSatish Balay 
1220a30f8f8cSSatish Balay   PetscFunctionBegin;
1221d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
122226fbe8dcSKarl Rupp 
1223a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
122426fbe8dcSKarl Rupp 
1225a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1226a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
122726fbe8dcSKarl Rupp 
1228a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
122926fbe8dcSKarl Rupp 
1230a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1231a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1232a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1233a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1234a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1235a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1236a30f8f8cSSatish Balay     info->memory       = isend[3];
1237a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1238a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1239ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
124026fbe8dcSKarl Rupp 
1241a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1242a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1243a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1244a30f8f8cSSatish Balay     info->memory       = irecv[3];
1245a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1246a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1247ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
124826fbe8dcSKarl Rupp 
1249a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1250a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1251a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1252a30f8f8cSSatish Balay     info->memory       = irecv[3];
1253a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1254f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1255a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1256a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1257a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1258a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1259a30f8f8cSSatish Balay }
1260a30f8f8cSSatish Balay 
12614a2ae208SSatish Balay #undef __FUNCT__
12624a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1263ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1264a30f8f8cSSatish Balay {
1265a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1266d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1267dfbe8321SBarry Smith   PetscErrorCode ierr;
1268a30f8f8cSSatish Balay 
1269a30f8f8cSSatish Balay   PetscFunctionBegin;
1270e98b92d7SKris Buschelman   switch (op) {
1271512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1272e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
127328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1274a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1275e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12764e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12774e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1278e98b92d7SKris Buschelman     break;
1279e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12804e0d8c25SBarry Smith     a->roworiented = flg;
128126fbe8dcSKarl Rupp 
12824e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12834e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1284e98b92d7SKris Buschelman     break;
12854e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1286290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1287e98b92d7SKris Buschelman     break;
1288e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12894e0d8c25SBarry Smith     a->donotstash = flg;
1290e98b92d7SKris Buschelman     break;
1291e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12924e0d8c25SBarry Smith     a->ht_flag = flg;
1293e98b92d7SKris Buschelman     break;
12949a4540c5SBarry Smith   case MAT_HERMITIAN:
1295e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1296eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
129726fbe8dcSKarl Rupp 
1298547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1299eeffb40dSHong Zhang     break;
1300ffa07934SHong Zhang   case MAT_SPD:
1301ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1302ffa07934SHong Zhang     A->spd     = flg;
1303ffa07934SHong Zhang     if (flg) {
1304ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1305ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1306ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1307ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1308ffa07934SHong Zhang     }
1309ffa07934SHong Zhang     break;
131077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1311eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1312eeffb40dSHong Zhang     break;
131377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1314eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1315eeffb40dSHong Zhang     break;
13169a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1317e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1318290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
131977e54ba9SKris Buschelman     break;
1320d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
13214e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1322d0d4cfc2SHong Zhang     break;
1323d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
13244e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1325d0d4cfc2SHong Zhang     break;
1326d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
13274e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1328d0d4cfc2SHong Zhang     break;
1329e98b92d7SKris Buschelman   default:
1330e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1331a30f8f8cSSatish Balay   }
1332a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1333a30f8f8cSSatish Balay }
1334a30f8f8cSSatish Balay 
13354a2ae208SSatish Balay #undef __FUNCT__
13368115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1337fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1338a30f8f8cSSatish Balay {
1339dfbe8321SBarry Smith   PetscErrorCode ierr;
13406e111a19SKarl Rupp 
1341a30f8f8cSSatish Balay   PetscFunctionBegin;
1342815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1343999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1344fc4dec0aSBarry Smith   }
13458115998fSBarry Smith   PetscFunctionReturn(0);
1346a30f8f8cSSatish Balay }
1347a30f8f8cSSatish Balay 
13484a2ae208SSatish Balay #undef __FUNCT__
13494a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1350dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1351a30f8f8cSSatish Balay {
1352a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1353a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1354dfbe8321SBarry Smith   PetscErrorCode ierr;
13555e90f9d9SHong Zhang   PetscInt       nv,m,n;
1356ace3abfcSBarry Smith   PetscBool      flg;
1357a30f8f8cSSatish Balay 
1358a30f8f8cSSatish Balay   PetscFunctionBegin;
1359a30f8f8cSSatish Balay   if (ll != rr) {
1360b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1361e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1362a30f8f8cSSatish Balay   }
1363b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1364b3bf805bSHong Zhang 
13655e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1366e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1367b3bf805bSHong Zhang 
13685e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1369e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13705e90f9d9SHong Zhang 
1371ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13725e90f9d9SHong Zhang 
13735e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
13740298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
13755e90f9d9SHong Zhang 
13765e90f9d9SHong Zhang   /* scale the diagonal part */
1377a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1378a30f8f8cSSatish Balay 
13795e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1380ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13810298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1382a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1383a30f8f8cSSatish Balay }
1384a30f8f8cSSatish Balay 
13854a2ae208SSatish Balay #undef __FUNCT__
13864a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1387dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1388a30f8f8cSSatish Balay {
1389f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1390dfbe8321SBarry Smith   PetscErrorCode ierr;
1391a30f8f8cSSatish Balay 
1392a30f8f8cSSatish Balay   PetscFunctionBegin;
1393a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1394a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1395a30f8f8cSSatish Balay }
1396a30f8f8cSSatish Balay 
13976849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1398a30f8f8cSSatish Balay 
13994a2ae208SSatish Balay #undef __FUNCT__
14004a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1401ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1402a30f8f8cSSatish Balay {
1403a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1404a30f8f8cSSatish Balay   Mat            a,b,c,d;
1405ace3abfcSBarry Smith   PetscBool      flg;
1406dfbe8321SBarry Smith   PetscErrorCode ierr;
1407a30f8f8cSSatish Balay 
1408a30f8f8cSSatish Balay   PetscFunctionBegin;
1409a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1410a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1411a30f8f8cSSatish Balay 
1412a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1413abc0a331SBarry Smith   if (flg) {
1414a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1415a30f8f8cSSatish Balay   }
1416ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1417a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1418a30f8f8cSSatish Balay }
1419a30f8f8cSSatish Balay 
14204a2ae208SSatish Balay #undef __FUNCT__
14213c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
14223c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
14233c896bc6SHong Zhang {
14243c896bc6SHong Zhang   PetscErrorCode ierr;
14253c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14263c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
14273c896bc6SHong Zhang 
14283c896bc6SHong Zhang   PetscFunctionBegin;
14293c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
14303c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1431d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
14323c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1433d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14343c896bc6SHong Zhang   } else {
14353c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14363c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14373c896bc6SHong Zhang   }
14383c896bc6SHong Zhang   PetscFunctionReturn(0);
14393c896bc6SHong Zhang }
14403c896bc6SHong Zhang 
14413c896bc6SHong Zhang #undef __FUNCT__
14424994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
14434994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1444273d9f13SBarry Smith {
1445dfbe8321SBarry Smith   PetscErrorCode ierr;
1446273d9f13SBarry Smith 
1447273d9f13SBarry Smith   PetscFunctionBegin;
1448535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1449273d9f13SBarry Smith   PetscFunctionReturn(0);
1450273d9f13SBarry Smith }
1451a5e6ed63SBarry Smith 
14524fe895cdSHong Zhang #undef __FUNCT__
14534fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14544fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14554fe895cdSHong Zhang {
14564fe895cdSHong Zhang   PetscErrorCode ierr;
14574fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
14584fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14594fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14604fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14614fe895cdSHong Zhang 
14624fe895cdSHong Zhang   PetscFunctionBegin;
14634fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14644fe895cdSHong Zhang     PetscScalar alpha = a;
14654fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
14664fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1467c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
14688b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
14694fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
14704fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1471c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
14728b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1473a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1474ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1475ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1476ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1477ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
14784fe895cdSHong Zhang   } else {
14794de5dceeSHong Zhang     Mat      B;
14804de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
14814de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1482d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14834de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
14844de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
14854de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
14864de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
14874de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
14884de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
14894de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
14904de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
14914de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
14924de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
14934de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
14944de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
14954de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
14964de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
14974de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1498d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14994de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
15004fe895cdSHong Zhang   }
15014fe895cdSHong Zhang   PetscFunctionReturn(0);
15024fe895cdSHong Zhang }
15034fe895cdSHong Zhang 
1504a5e6ed63SBarry Smith #undef __FUNCT__
1505a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
15061302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1507a5e6ed63SBarry Smith {
15086849ba73SBarry Smith   PetscErrorCode ierr;
15091302d50aSBarry Smith   PetscInt       i;
1510*68906dc2SToby Isaac   PetscBool      flg,sorted;
1511a5e6ed63SBarry Smith 
15126849ba73SBarry Smith   PetscFunctionBegin;
1513*68906dc2SToby Isaac   for (i = 0; i < n; i++) {
1514*68906dc2SToby Isaac     ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr);
1515*68906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i);
1516*68906dc2SToby Isaac     ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr);
1517*68906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i);
1518*68906dc2SToby Isaac   }
15194dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1520a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1521a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
15224dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
15234dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1524a5e6ed63SBarry Smith     }
15254dcd73b1SHong Zhang   }
1526a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1527a5e6ed63SBarry Smith }
1528a5e6ed63SBarry Smith 
1529a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
15303964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1531a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1532a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1533a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
153497304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1535431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1536431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1537a30f8f8cSSatish Balay                                        0,
1538a30f8f8cSSatish Balay                                        0,
1539a30f8f8cSSatish Balay                                        0,
154097304618SKris Buschelman                                /* 10*/ 0,
1541a30f8f8cSSatish Balay                                        0,
1542a30f8f8cSSatish Balay                                        0,
154341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1544a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
154597304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1546a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1547a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1548a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1549a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
155097304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1551a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1552a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1553a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1554d519adbfSMatthew Knepley                                /* 24*/ 0,
1555a30f8f8cSSatish Balay                                        0,
1556a30f8f8cSSatish Balay                                        0,
1557a30f8f8cSSatish Balay                                        0,
1558a30f8f8cSSatish Balay                                        0,
15594994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1560b5df2d14SHong Zhang                                        0,
1561a30f8f8cSSatish Balay                                        0,
1562a30f8f8cSSatish Balay                                        0,
1563a30f8f8cSSatish Balay                                        0,
1564d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1565a30f8f8cSSatish Balay                                        0,
1566a30f8f8cSSatish Balay                                        0,
1567a30f8f8cSSatish Balay                                        0,
1568a30f8f8cSSatish Balay                                        0,
1569d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1570a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1571d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1572a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
15733c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1574d519adbfSMatthew Knepley                                /* 44*/ 0,
1575a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1576a30f8f8cSSatish Balay                                        0,
1577a30f8f8cSSatish Balay                                        0,
1578a30f8f8cSSatish Balay                                        0,
1579f73d5cc4SBarry Smith                                /* 49*/ 0,
1580a30f8f8cSSatish Balay                                        0,
1581a30f8f8cSSatish Balay                                        0,
1582a30f8f8cSSatish Balay                                        0,
1583a30f8f8cSSatish Balay                                        0,
1584d519adbfSMatthew Knepley                                /* 54*/ 0,
1585a30f8f8cSSatish Balay                                        0,
1586a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1587a30f8f8cSSatish Balay                                        0,
1588a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
15898f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1590a30f8f8cSSatish Balay                                        0,
1591a30f8f8cSSatish Balay                                        0,
1592357abbc8SBarry Smith                                        0,
159324d5174aSHong Zhang                                        0,
1594d519adbfSMatthew Knepley                                /* 64*/ 0,
159524d5174aSHong Zhang                                        0,
159624d5174aSHong Zhang                                        0,
159724d5174aSHong Zhang                                        0,
159824d5174aSHong Zhang                                        0,
1599d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
160024d5174aSHong Zhang                                        0,
160197304618SKris Buschelman                                        0,
160297304618SKris Buschelman                                        0,
160397304618SKris Buschelman                                        0,
1604d519adbfSMatthew Knepley                                /* 74*/ 0,
160597304618SKris Buschelman                                        0,
160697304618SKris Buschelman                                        0,
160797304618SKris Buschelman                                        0,
160897304618SKris Buschelman                                        0,
1609d519adbfSMatthew Knepley                                /* 79*/ 0,
161097304618SKris Buschelman                                        0,
161197304618SKris Buschelman                                        0,
161297304618SKris Buschelman                                        0,
16135bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1614d519adbfSMatthew Knepley                                /* 84*/ 0,
1615865e5f61SKris Buschelman                                        0,
1616865e5f61SKris Buschelman                                        0,
1617865e5f61SKris Buschelman                                        0,
1618865e5f61SKris Buschelman                                        0,
1619d519adbfSMatthew Knepley                                /* 89*/ 0,
1620865e5f61SKris Buschelman                                        0,
1621865e5f61SKris Buschelman                                        0,
1622865e5f61SKris Buschelman                                        0,
1623865e5f61SKris Buschelman                                        0,
1624d519adbfSMatthew Knepley                                /* 94*/ 0,
1625865e5f61SKris Buschelman                                        0,
1626865e5f61SKris Buschelman                                        0,
162799cafbc1SBarry Smith                                        0,
162899cafbc1SBarry Smith                                        0,
1629d519adbfSMatthew Knepley                                /* 99*/ 0,
163099cafbc1SBarry Smith                                        0,
163199cafbc1SBarry Smith                                        0,
163299cafbc1SBarry Smith                                        0,
163399cafbc1SBarry Smith                                        0,
1634d519adbfSMatthew Knepley                                /*104*/ 0,
163599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1636d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1637d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
163895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
163995936485SShri Abhyankar                                /*109*/ 0,
164095936485SShri Abhyankar                                        0,
164195936485SShri Abhyankar                                        0,
164295936485SShri Abhyankar                                        0,
164395936485SShri Abhyankar                                        0,
164495936485SShri Abhyankar                                /*114*/ 0,
164595936485SShri Abhyankar                                        0,
164695936485SShri Abhyankar                                        0,
164795936485SShri Abhyankar                                        0,
164895936485SShri Abhyankar                                        0,
164995936485SShri Abhyankar                                /*119*/ 0,
165095936485SShri Abhyankar                                        0,
165195936485SShri Abhyankar                                        0,
16523964eb88SJed Brown                                        0,
16533964eb88SJed Brown                                        0,
16543964eb88SJed Brown                                /*124*/ 0,
16553964eb88SJed Brown                                        0,
16563964eb88SJed Brown                                        0,
16573964eb88SJed Brown                                        0,
16583964eb88SJed Brown                                        0,
16593964eb88SJed Brown                                /*129*/ 0,
16603964eb88SJed Brown                                        0,
16613964eb88SJed Brown                                        0,
16623964eb88SJed Brown                                        0,
16633964eb88SJed Brown                                        0,
16643964eb88SJed Brown                                /*134*/ 0,
16653964eb88SJed Brown                                        0,
16663964eb88SJed Brown                                        0,
16673964eb88SJed Brown                                        0,
16683964eb88SJed Brown                                        0,
16693964eb88SJed Brown                                /*139*/ 0,
1670f9426fe0SMark Adams                                        0,
167159f5e6ceSHong Zhang                                        0,
167259f5e6ceSHong Zhang                                        0,
167359f5e6ceSHong Zhang                                        0,
167459f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
167599cafbc1SBarry Smith };
1676a30f8f8cSSatish Balay 
16774a2ae208SSatish Balay #undef __FUNCT__
16784a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
167911bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1680a30f8f8cSSatish Balay {
1681a30f8f8cSSatish Balay   PetscFunctionBegin;
1682a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1683a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1684a30f8f8cSSatish Balay }
1685a30f8f8cSSatish Balay 
16864a2ae208SSatish Balay #undef __FUNCT__
1687a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1688b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1689a23d5eceSKris Buschelman {
1690a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1691dfbe8321SBarry Smith   PetscErrorCode ierr;
1692535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1693a23d5eceSKris Buschelman 
1694a23d5eceSKris Buschelman   PetscFunctionBegin;
169533d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
169626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
169726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1698e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1699899cda47SBarry Smith 
1700a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1701d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1702d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1703c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1704a23d5eceSKris Buschelman 
1705d0f46423SBarry Smith   B->rmap->bs = bs;
1706a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1707a23d5eceSKris Buschelman   b->mbs      = mbs;
1708a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1709de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1710de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1711a23d5eceSKris Buschelman 
1712a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1713d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1714a23d5eceSKris Buschelman   }
1715d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1716d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1717a23d5eceSKris Buschelman 
1718d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1719d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1720a23d5eceSKris Buschelman 
1721526dfc15SBarry Smith   if (!B->preallocated) {
1722f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1723d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
17249c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
17253bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1726f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1727d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
17284aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
17293bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1730ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1731526dfc15SBarry Smith   }
1732a23d5eceSKris Buschelman 
1733526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1734526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
173526fbe8dcSKarl Rupp 
1736526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1737a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1738a23d5eceSKris Buschelman }
1739a23d5eceSKris Buschelman 
1740dfb205c3SBarry Smith #undef __FUNCT__
1741dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1742dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1743dfb205c3SBarry Smith {
1744dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1745dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1746dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1747dfb205c3SBarry Smith   PetscScalar    *values=0;
1748dfb205c3SBarry Smith   PetscErrorCode ierr;
1749dfb205c3SBarry Smith 
1750dfb205c3SBarry Smith   PetscFunctionBegin;
1751ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1752dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1753dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1754dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1755dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1756e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1757dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1758dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1759dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1760dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1761dfb205c3SBarry Smith 
1762dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1763dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1764dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1765dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1766dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1767dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1768dfb205c3SBarry Smith     JJ     = jj + ii[i];
1769dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1770dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1771dfb205c3SBarry Smith       JJ++;
1772dfb205c3SBarry Smith     }
1773dfb205c3SBarry Smith     d = 0;
1774dfb205c3SBarry Smith     for (; j<nz; j++) {
1775dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1776dfb205c3SBarry Smith       d++;
1777dfb205c3SBarry Smith     }
1778dfb205c3SBarry Smith     d_nnz[i] = d;
1779dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1780dfb205c3SBarry Smith   }
1781dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1782dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1783dfb205c3SBarry Smith 
1784dfb205c3SBarry Smith   values = (PetscScalar*)V;
1785dfb205c3SBarry Smith   if (!values) {
1786785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1787dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1788dfb205c3SBarry Smith   }
1789dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1790dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1791dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1792dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1793dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1794dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1795dfb205c3SBarry Smith   }
1796dfb205c3SBarry Smith 
1797dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1798dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1799dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18007827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1801dfb205c3SBarry Smith   PetscFunctionReturn(0);
1802dfb205c3SBarry Smith }
1803dfb205c3SBarry Smith 
18040bad9183SKris Buschelman /*MC
1805fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1806828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1807828413b8SBarry Smith    the matrix is stored.
1808828413b8SBarry Smith 
1809828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1810828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
18110bad9183SKris Buschelman 
18120bad9183SKris Buschelman    Options Database Keys:
18130bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
18140bad9183SKris Buschelman 
18150bad9183SKris Buschelman   Level: beginner
18160bad9183SKris Buschelman 
18170bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
18180bad9183SKris Buschelman M*/
18190bad9183SKris Buschelman 
18208cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1821aa5a9175SDahai Guo 
1822a23d5eceSKris Buschelman #undef __FUNCT__
18234a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
18248cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1825b5df2d14SHong Zhang {
1826b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1827dfbe8321SBarry Smith   PetscErrorCode ierr;
182894ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang   PetscFunctionBegin;
1831b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1832b0a32e0cSBarry Smith   B->data = (void*)b;
1833b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1834b5df2d14SHong Zhang 
1835b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1836b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1837b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1838b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
183926fbe8dcSKarl Rupp 
1840ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1841ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1842b5df2d14SHong Zhang 
1843b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1844854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
1845b5df2d14SHong Zhang 
1846b5df2d14SHong Zhang   /* build cache for off array entries formed */
1847ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
184826fbe8dcSKarl Rupp 
1849b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
18500298fd71SBarry Smith   b->colmap      = NULL;
18510298fd71SBarry Smith   b->garray      = NULL;
1852b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1853b5df2d14SHong Zhang 
1854b5df2d14SHong Zhang   /* stuff used in block assembly */
1855b5df2d14SHong Zhang   b->barray = 0;
1856b5df2d14SHong Zhang 
1857b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1858b5df2d14SHong Zhang   b->lvec    = 0;
1859b5df2d14SHong Zhang   b->Mvctx   = 0;
186040781036SHong Zhang   b->slvec0  = 0;
186140781036SHong Zhang   b->slvec0b = 0;
186240781036SHong Zhang   b->slvec1  = 0;
186340781036SHong Zhang   b->slvec1a = 0;
186440781036SHong Zhang   b->slvec1b = 0;
186540781036SHong Zhang   b->sMvctx  = 0;
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1868b5df2d14SHong Zhang   b->rowindices   = 0;
1869b5df2d14SHong Zhang   b->rowvalues    = 0;
1870b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1871b5df2d14SHong Zhang 
1872b5df2d14SHong Zhang   /* hash table stuff */
1873b5df2d14SHong Zhang   b->ht           = 0;
1874b5df2d14SHong Zhang   b->hd           = 0;
1875b5df2d14SHong Zhang   b->ht_size      = 0;
1876b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1877b5df2d14SHong Zhang   b->ht_fact      = 0;
1878b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1879b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1880b5df2d14SHong Zhang 
18817a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18827a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
18837a868f3eSHong Zhang 
188459ffdab8SBarry Smith   b->in_loc = 0;
188559ffdab8SBarry Smith   b->v_loc  = 0;
188659ffdab8SBarry Smith   b->n_loc  = 0;
188794ae4db5SBarry Smith 
1888bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1889bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1890bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1891bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1892bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1893bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
18946214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
18956214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
18966214f412SHong Zhang #endif
1897aa5a9175SDahai Guo 
189823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
189923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
190023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
190123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
190226fbe8dcSKarl Rupp 
190317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
190494ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
190594ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
190694ae4db5SBarry Smith   if (flg) {
190794ae4db5SBarry Smith     PetscReal fact = 1.39;
190894ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
190994ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
191094ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
191194ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
191294ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
191394ae4db5SBarry Smith   }
191494ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1915b5df2d14SHong Zhang   PetscFunctionReturn(0);
1916b5df2d14SHong Zhang }
1917b5df2d14SHong Zhang 
1918209238afSKris Buschelman /*MC
1919002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1920209238afSKris Buschelman 
1921209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1922209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1923209238afSKris Buschelman 
1924209238afSKris Buschelman    Options Database Keys:
1925209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1926209238afSKris Buschelman 
1927209238afSKris Buschelman   Level: beginner
1928209238afSKris Buschelman 
1929209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1930209238afSKris Buschelman M*/
1931209238afSKris Buschelman 
19324a2ae208SSatish Balay #undef __FUNCT__
19334a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1934b5df2d14SHong Zhang /*@C
1935b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1936b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1937b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1938b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1939b5df2d14SHong Zhang 
1940b5df2d14SHong Zhang    Collective on Mat
1941b5df2d14SHong Zhang 
1942b5df2d14SHong Zhang    Input Parameters:
19431c4f3114SJed Brown +  B - the matrix
1944bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1945bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1946b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1947b5df2d14SHong Zhang            submatrix  (same for all local rows)
1948b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19496d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
19500298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
195195742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1952b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1953b5df2d14SHong Zhang            submatrix (same for all local rows).
1954b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1955c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
19560298fd71SBarry Smith            (possibly different for each block row) or NULL.
1957b5df2d14SHong Zhang 
1958b5df2d14SHong Zhang 
1959b5df2d14SHong Zhang    Options Database Keys:
1960b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1961b5df2d14SHong Zhang                      block calculations (much slower)
1962b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1963b5df2d14SHong Zhang 
1964b5df2d14SHong Zhang    Notes:
1965b5df2d14SHong Zhang 
1966b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1967b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1968b5df2d14SHong Zhang 
196949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197049a6f317SBarry Smith 
1971b5df2d14SHong Zhang    Storage Information:
1972b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1973b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1974b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1975b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1976b5df2d14SHong Zhang 
1977b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1978b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
19790298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1980b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1981b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1982b5df2d14SHong Zhang 
1983aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1984aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1985aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1986aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1987aa95bbe8SBarry Smith 
1988b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1989b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1990b5df2d14SHong Zhang 
1991b5df2d14SHong Zhang .vb
1992b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1993a4b1a0f6SJed Brown           --------------------------
1994c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1995c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1996c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
1997a4b1a0f6SJed Brown           --------------------------
1998b5df2d14SHong Zhang .ve
1999b5df2d14SHong Zhang 
2000b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2001b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
20026d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20036d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2004b5df2d14SHong Zhang 
20056d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20066d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2007c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2008c2fc9fa9SBarry Smith 
2009b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2010b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2011b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2012b5df2d14SHong Zhang    matrices.
2013b5df2d14SHong Zhang 
2014b5df2d14SHong Zhang    Level: intermediate
2015b5df2d14SHong Zhang 
2016b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2017b5df2d14SHong Zhang 
2018ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2019b5df2d14SHong Zhang @*/
20207087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2021b5df2d14SHong Zhang {
20224ac538c5SBarry Smith   PetscErrorCode ierr;
2023b5df2d14SHong Zhang 
2024b5df2d14SHong Zhang   PetscFunctionBegin;
20256ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
20266ba663aaSJed Brown   PetscValidType(B,1);
20276ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
20284ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2029b5df2d14SHong Zhang   PetscFunctionReturn(0);
2030b5df2d14SHong Zhang }
2031b5df2d14SHong Zhang 
20324a2ae208SSatish Balay #undef __FUNCT__
203369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2034a30f8f8cSSatish Balay /*@C
203569b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2036a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2037a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2038a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2039a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2040a30f8f8cSSatish Balay 
2041a30f8f8cSSatish Balay    Collective on MPI_Comm
2042a30f8f8cSSatish Balay 
2043a30f8f8cSSatish Balay    Input Parameters:
2044a30f8f8cSSatish Balay +  comm - MPI communicator
2045bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2046bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2047a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2048a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2049a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2050a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2051a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2052a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2053a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2054a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2055a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2056a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2057a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20586d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20590298fd71SBarry Smith            (possibly different for each block block row) or NULL.
206095742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
206195742e49SBarry Smith            set its value even if it is zero.
2062a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2063a30f8f8cSSatish Balay            submatrix (same for all local rows).
2064a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2065a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
20660298fd71SBarry Smith            each block row) or NULL.
2067a30f8f8cSSatish Balay 
2068a30f8f8cSSatish Balay    Output Parameter:
2069a30f8f8cSSatish Balay .  A - the matrix
2070a30f8f8cSSatish Balay 
2071a30f8f8cSSatish Balay    Options Database Keys:
2072a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2073a30f8f8cSSatish Balay                      block calculations (much slower)
2074a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2075a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2076a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2077a30f8f8cSSatish Balay 
2078175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2079ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2080175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2081175b88e8SBarry Smith 
2082a30f8f8cSSatish Balay    Notes:
2083d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20846d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2085d1be2dadSMatthew Knepley 
2086a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2087a30f8f8cSSatish Balay    (possibly both).
2088a30f8f8cSSatish Balay 
2089a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2090a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2091a30f8f8cSSatish Balay 
209249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
209349a6f317SBarry Smith 
2094a30f8f8cSSatish Balay    Storage Information:
2095a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2096a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2097a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2098a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2099a30f8f8cSSatish Balay 
2100a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2101a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
21020298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2103a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2104a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2105a30f8f8cSSatish Balay 
2106a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2107a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2108a30f8f8cSSatish Balay 
2109a30f8f8cSSatish Balay .vb
2110a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2111a4b1a0f6SJed Brown           --------------------------
2112c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2113c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2114c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2115a4b1a0f6SJed Brown           --------------------------
2116a30f8f8cSSatish Balay .ve
2117a30f8f8cSSatish Balay 
2118a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2119a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
21206d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
21216d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2122a30f8f8cSSatish Balay 
21236d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
21246d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2125a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2126a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2127a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2128a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2129a30f8f8cSSatish Balay    matrices.
2130a30f8f8cSSatish Balay 
2131a30f8f8cSSatish Balay    Level: intermediate
2132a30f8f8cSSatish Balay 
2133a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2134a30f8f8cSSatish Balay 
213569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2136a30f8f8cSSatish Balay @*/
2137a30f8f8cSSatish Balay 
213869b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2139a30f8f8cSSatish Balay {
21406849ba73SBarry Smith   PetscErrorCode ierr;
21411302d50aSBarry Smith   PetscMPIInt    size;
2142a30f8f8cSSatish Balay 
2143a30f8f8cSSatish Balay   PetscFunctionBegin;
2144f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2145f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2146273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2147273d9f13SBarry Smith   if (size > 1) {
2148b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2149b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2150273d9f13SBarry Smith   } else {
2151273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2152273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2153273d9f13SBarry Smith   }
2154a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2155a30f8f8cSSatish Balay }
2156a30f8f8cSSatish Balay 
2157a30f8f8cSSatish Balay 
21584a2ae208SSatish Balay #undef __FUNCT__
21594a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2161a30f8f8cSSatish Balay {
2162a30f8f8cSSatish Balay   Mat            mat;
2163a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2164dfbe8321SBarry Smith   PetscErrorCode ierr;
2165d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2166387bc808SHong Zhang   PetscScalar    *array;
2167a30f8f8cSSatish Balay 
2168a30f8f8cSSatish Balay   PetscFunctionBegin;
2169a30f8f8cSSatish Balay   *newmat = 0;
217026fbe8dcSKarl Rupp 
2171ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2172d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21737adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21741d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21751e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21761e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2177e1b6402fSHong Zhang 
2178d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2179273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
218082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21817fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21827fff6886SHong Zhang 
2183b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2184a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2185a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2186a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2187a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2188a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2189a30f8f8cSSatish Balay 
2190899cda47SBarry Smith 
2191a30f8f8cSSatish Balay   a->size         = oldmat->size;
2192a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2193a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2194a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2195a30f8f8cSSatish Balay   a->rowindices   = 0;
2196a30f8f8cSSatish Balay   a->rowvalues    = 0;
2197a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2198a30f8f8cSSatish Balay   a->barray       = 0;
2199899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2200899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2201899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2202899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2203a30f8f8cSSatish Balay 
2204a30f8f8cSSatish Balay   /* hash table stuff */
2205a30f8f8cSSatish Balay   a->ht           = 0;
2206a30f8f8cSSatish Balay   a->hd           = 0;
2207a30f8f8cSSatish Balay   a->ht_size      = 0;
2208a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2209a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2210a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2211a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2212a30f8f8cSSatish Balay 
2213899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2214a30f8f8cSSatish Balay   if (oldmat->colmap) {
2215a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2216a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2217a30f8f8cSSatish Balay #else
2218854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
22193bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
22201302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2221a30f8f8cSSatish Balay #endif
2222a30f8f8cSSatish Balay   } else a->colmap = 0;
2223387bc808SHong Zhang 
2224a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2225785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
22263bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
22271302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   } else a->garray = 0;
2229a30f8f8cSSatish Balay 
2230ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
22323bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2233a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
22343bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
223582327fa8SHong Zhang 
223682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
22373bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
223882327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
22393bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2240387bc808SHong Zhang 
2241387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
22421ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2243778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2244778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22451ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22461ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2247778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22481ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
22493bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
22503bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
22513bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
22523bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
22533bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2254387bc808SHong Zhang 
2255387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2256387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2257387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
22583bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
225982327fa8SHong Zhang 
2260a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
22613bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2262a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
22633bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2264140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay   *newmat = mat;
2266a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2267a30f8f8cSSatish Balay }
2268a30f8f8cSSatish Balay 
22694a2ae208SSatish Balay #undef __FUNCT__
22705bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2271112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
227295936485SShri Abhyankar {
227395936485SShri Abhyankar   PetscErrorCode ierr;
227495936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
227595936485SShri Abhyankar   PetscScalar    *vals,*buf;
2276ce94432eSBarry Smith   MPI_Comm       comm;
227795936485SShri Abhyankar   MPI_Status     status;
2278adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2279adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
228095936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
22813059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
228295936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
228395936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
228495936485SShri Abhyankar   int            fd;
228595936485SShri Abhyankar 
228695936485SShri Abhyankar   PetscFunctionBegin;
2287c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2288c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2289ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22900298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22910298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
229295936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
22933059b6faSBarry Smith   if (bs < 0) bs = 1;
229495936485SShri Abhyankar 
229595936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
229695936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
229795936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
22985872f025SBarry Smith   if (!rank) {
229995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
230095936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
230195936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
230295936485SShri Abhyankar   }
230395936485SShri Abhyankar 
230495936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
230595936485SShri Abhyankar 
230695936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
230726fbe8dcSKarl Rupp   M    = header[1];
230826fbe8dcSKarl Rupp   N    = header[2];
230995936485SShri Abhyankar 
231095936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
231195936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
231295936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
231395936485SShri Abhyankar 
231495936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
231595936485SShri Abhyankar   if (sizesset) {
231695936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
231795936485SShri Abhyankar   }
2318abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2319abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
232095936485SShri Abhyankar 
232195936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
232295936485SShri Abhyankar 
232395936485SShri Abhyankar   /*
232495936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
232595936485SShri Abhyankar      divisible by the blocksize
232695936485SShri Abhyankar   */
232795936485SShri Abhyankar   Mbs        = M/bs;
232895936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
232995936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
233095936485SShri Abhyankar   else                  Mbs++;
233195936485SShri Abhyankar   if (extra_rows &&!rank) {
233295936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
233395936485SShri Abhyankar   }
233495936485SShri Abhyankar 
233595936485SShri Abhyankar   /* determine ownership of all rows */
233695936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
233795936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
233895936485SShri Abhyankar     m   = mbs*bs;
233995936485SShri Abhyankar   } else { /* User Set */
234095936485SShri Abhyankar     m   = newmat->rmap->n;
234195936485SShri Abhyankar     mbs = m/bs;
234295936485SShri Abhyankar   }
2343dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
23444dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
234595936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
234695936485SShri Abhyankar   rowners[0] = 0;
234795936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
234895936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
234995936485SShri Abhyankar   rstart = rowners[rank];
235095936485SShri Abhyankar   rend   = rowners[rank+1];
235195936485SShri Abhyankar 
235295936485SShri Abhyankar   /* distribute row lengths to all processors */
2353785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
235495936485SShri Abhyankar   if (!rank) {
2355854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
235695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
235795936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2358785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
235995936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
236095936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
236195936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
236295936485SShri Abhyankar   } else {
236395936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
236495936485SShri Abhyankar   }
236595936485SShri Abhyankar 
236695936485SShri Abhyankar   if (!rank) {   /* procs[0] */
236795936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2368785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
236995936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
237095936485SShri Abhyankar     for (i=0; i<size; i++) {
237195936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
237295936485SShri Abhyankar         procsnz[i] += rowlengths[j];
237395936485SShri Abhyankar       }
237495936485SShri Abhyankar     }
237595936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
237695936485SShri Abhyankar 
237795936485SShri Abhyankar     /* determine max buffer needed and allocate it */
237895936485SShri Abhyankar     maxnz = 0;
237995936485SShri Abhyankar     for (i=0; i<size; i++) {
238095936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
238195936485SShri Abhyankar     }
2382785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
238395936485SShri Abhyankar 
238495936485SShri Abhyankar     /* read in my part of the matrix column indices  */
238595936485SShri Abhyankar     nz     = procsnz[0];
2386785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
238795936485SShri Abhyankar     mycols = ibuf;
238895936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
238995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
239026fbe8dcSKarl Rupp     if (size == 1) {
239126fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
239226fbe8dcSKarl Rupp     }
239395936485SShri Abhyankar 
239495936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
239595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
239695936485SShri Abhyankar       nz   = procsnz[i];
239795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
239895936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
239995936485SShri Abhyankar     }
240095936485SShri Abhyankar     /* read in the stuff for the last proc */
240195936485SShri Abhyankar     if (size != 1) {
240295936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
240395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
240495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
240595936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
240695936485SShri Abhyankar     }
240795936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
240895936485SShri Abhyankar   } else {  /* procs[i], i>0 */
240995936485SShri Abhyankar     /* determine buffer space needed for message */
241095936485SShri Abhyankar     nz = 0;
241126fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2412785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
241395936485SShri Abhyankar     mycols = ibuf;
241495936485SShri Abhyankar     /* receive message of column indices*/
241595936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
241695936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
241795936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
241895936485SShri Abhyankar   }
241995936485SShri Abhyankar 
242095936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2421dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2422dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
242395936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
242495936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
242595936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
242695936485SShri Abhyankar   rowcount = 0;
242795936485SShri Abhyankar   nzcount  = 0;
242895936485SShri Abhyankar   for (i=0; i<mbs; i++) {
242995936485SShri Abhyankar     dcount  = 0;
243095936485SShri Abhyankar     odcount = 0;
243195936485SShri Abhyankar     for (j=0; j<bs; j++) {
243295936485SShri Abhyankar       kmax = locrowlens[rowcount];
243395936485SShri Abhyankar       for (k=0; k<kmax; k++) {
243495936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
243595936485SShri Abhyankar         if (!mask[tmp]) {
243695936485SShri Abhyankar           mask[tmp] = 1;
243795936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
243895936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
243995936485SShri Abhyankar         }
244095936485SShri Abhyankar       }
244195936485SShri Abhyankar       rowcount++;
244295936485SShri Abhyankar     }
244395936485SShri Abhyankar 
244495936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
244595936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
244695936485SShri Abhyankar 
244795936485SShri Abhyankar     /* zero out the mask elements we set */
244895936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
244995936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
245095936485SShri Abhyankar   }
245195936485SShri Abhyankar   if (!sizesset) {
245295936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
245395936485SShri Abhyankar   }
245495936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
24556816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
245695936485SShri Abhyankar 
245795936485SShri Abhyankar   if (!rank) {
2458785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
245995936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
246095936485SShri Abhyankar     nz     = procsnz[0];
246195936485SShri Abhyankar     vals   = buf;
246295936485SShri Abhyankar     mycols = ibuf;
246395936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
246495936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
246526fbe8dcSKarl Rupp     if (size == 1) {
246626fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
246726fbe8dcSKarl Rupp     }
246895936485SShri Abhyankar 
246995936485SShri Abhyankar     /* insert into matrix */
247095936485SShri Abhyankar     jj = rstart*bs;
247195936485SShri Abhyankar     for (i=0; i<m; i++) {
247295936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
247395936485SShri Abhyankar       mycols += locrowlens[i];
247495936485SShri Abhyankar       vals   += locrowlens[i];
247595936485SShri Abhyankar       jj++;
247695936485SShri Abhyankar     }
247795936485SShri Abhyankar 
247895936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
247995936485SShri Abhyankar     for (i=1; i<size-1; i++) {
248095936485SShri Abhyankar       nz   = procsnz[i];
248195936485SShri Abhyankar       vals = buf;
248295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
248395936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
248495936485SShri Abhyankar     }
248595936485SShri Abhyankar     /* the last proc */
248695936485SShri Abhyankar     if (size != 1) {
248795936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
248895936485SShri Abhyankar       vals = buf;
248995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
249095936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
249195936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
249295936485SShri Abhyankar     }
249395936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
249495936485SShri Abhyankar 
249595936485SShri Abhyankar   } else {
249695936485SShri Abhyankar     /* receive numeric values */
2497785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
249895936485SShri Abhyankar 
249995936485SShri Abhyankar     /* receive message of values*/
250095936485SShri Abhyankar     vals   = buf;
250195936485SShri Abhyankar     mycols = ibuf;
250295936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
250395936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
250495936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
250595936485SShri Abhyankar 
250695936485SShri Abhyankar     /* insert into matrix */
250795936485SShri Abhyankar     jj = rstart*bs;
250895936485SShri Abhyankar     for (i=0; i<m; i++) {
250995936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
251095936485SShri Abhyankar       mycols += locrowlens[i];
251195936485SShri Abhyankar       vals   += locrowlens[i];
251295936485SShri Abhyankar       jj++;
251395936485SShri Abhyankar     }
251495936485SShri Abhyankar   }
251595936485SShri Abhyankar 
251695936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
251795936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
251895936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
251995936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
252095936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
252195936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
252295936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
252395936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
252495936485SShri Abhyankar   PetscFunctionReturn(0);
252595936485SShri Abhyankar }
252695936485SShri Abhyankar 
252795936485SShri Abhyankar #undef __FUNCT__
25284a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2529dcf5cc72SBarry Smith /*XXXXX@
2530a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2531a30f8f8cSSatish Balay 
2532a30f8f8cSSatish Balay    Input Parameters:
2533a30f8f8cSSatish Balay .  mat  - the matrix
2534a30f8f8cSSatish Balay .  fact - factor
2535a30f8f8cSSatish Balay 
2536c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2537a30f8f8cSSatish Balay 
2538a30f8f8cSSatish Balay    Level: advanced
2539a30f8f8cSSatish Balay 
2540a30f8f8cSSatish Balay   Notes:
2541a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2542a30f8f8cSSatish Balay 
2543a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2544a30f8f8cSSatish Balay 
2545a30f8f8cSSatish Balay .seealso: MatSetOption()
2546dcf5cc72SBarry Smith @XXXXX*/
2547dcf5cc72SBarry Smith 
254824d5174aSHong Zhang 
25494a2ae208SSatish Balay #undef __FUNCT__
2550985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2551985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
255224d5174aSHong Zhang {
255324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2554f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2555ca54ac64SHong Zhang   PetscReal      atmp;
255687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2557dfbe8321SBarry Smith   PetscErrorCode ierr;
25581302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25591302d50aSBarry Smith   PetscMPIInt    rank,size;
25601302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
256187828ca2SBarry Smith   PetscScalar    *va;
25628a1c53f2SBarry Smith   MatScalar      *ba;
2563f4c0e9e4SHong Zhang   MPI_Status     stat;
256424d5174aSHong Zhang 
256524d5174aSHong Zhang   PetscFunctionBegin;
2566e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
25670298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
25681ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2569f4c0e9e4SHong Zhang 
2570ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2571ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2572f4c0e9e4SHong Zhang 
2573d0f46423SBarry Smith   bs  = A->rmap->bs;
2574f4c0e9e4SHong Zhang   mbs = a->mbs;
2575f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2576f4c0e9e4SHong Zhang   ba  = b->a;
2577f4c0e9e4SHong Zhang   bi  = b->i;
2578f4c0e9e4SHong Zhang   bj  = b->j;
2579f4c0e9e4SHong Zhang 
2580f4c0e9e4SHong Zhang   /* find ownerships */
2581d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2582f4c0e9e4SHong Zhang 
2583f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2584785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2585ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2586f4c0e9e4SHong Zhang 
2587f4c0e9e4SHong Zhang   /* row_max for B */
2588b8475685SHong Zhang   if (rank != size-1) {
2589f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2590f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2591f4c0e9e4SHong Zhang       brow  = bs*i;
2592f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2593f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2594f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2595ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
259604d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2597f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2598f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2599ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2600ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2601f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2602f4c0e9e4SHong Zhang           }
2603f4c0e9e4SHong Zhang         }
2604f4c0e9e4SHong Zhang         bj++;
2605f4c0e9e4SHong Zhang       }
2606f4c0e9e4SHong Zhang     }
2607f4c0e9e4SHong Zhang 
2608f4c0e9e4SHong Zhang     /* send values to its owners */
2609f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2610f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2611ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2612ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2613ca54ac64SHong Zhang     }
2614f4c0e9e4SHong Zhang   }
2615f4c0e9e4SHong Zhang 
2616f4c0e9e4SHong Zhang   /* receive values */
2617ca54ac64SHong Zhang   if (rank) {
2618f4c0e9e4SHong Zhang     rvalues = work;
2619ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2620f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2621ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2622f4c0e9e4SHong Zhang       /* process values */
2623f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2624ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2625f4c0e9e4SHong Zhang       }
2626f4c0e9e4SHong Zhang     }
2627ca54ac64SHong Zhang   }
2628f4c0e9e4SHong Zhang 
26291ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2630ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
263124d5174aSHong Zhang   PetscFunctionReturn(0);
263224d5174aSHong Zhang }
26332798e883SHong Zhang 
26342798e883SHong Zhang #undef __FUNCT__
263541f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
263641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26372798e883SHong Zhang {
26382798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2639dfbe8321SBarry Smith   PetscErrorCode    ierr;
2640d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26413649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2642ffe4fb16SHong Zhang   Vec               bb1;
26433649974fSBarry Smith   const PetscScalar *b;
2644ffe4fb16SHong Zhang 
2645ffe4fb16SHong Zhang   PetscFunctionBegin;
2646e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2647e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2648ffe4fb16SHong Zhang 
2649a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
265041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2651a2b30743SBarry Smith     PetscFunctionReturn(0);
2652a2b30743SBarry Smith   }
2653a2b30743SBarry Smith 
2654ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2655ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
265641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2657ffe4fb16SHong Zhang       its--;
2658ffe4fb16SHong Zhang     }
2659ffe4fb16SHong Zhang 
2660ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2661ffe4fb16SHong Zhang     while (its--) {
2662ffe4fb16SHong Zhang 
2663ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2664ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2665ffe4fb16SHong Zhang 
2666ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26671ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26681ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2669ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26701ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2671ffe4fb16SHong Zhang 
2672efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2673ffe4fb16SHong Zhang 
2674ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26751ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26763649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2677ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26781ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2679ffe4fb16SHong Zhang 
2680ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2681fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2682ffe4fb16SHong Zhang 
2683ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26841ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2685a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2686ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2687ffe4fb16SHong Zhang 
2688ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2689ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2690ffe4fb16SHong Zhang 
2691ffe4fb16SHong Zhang       /* local diagonal sweep */
269241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2693ffe4fb16SHong Zhang     }
26946bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2695fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
269641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2697fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
269841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2699fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2700fa22f6d0SBarry Smith     Vec               xx1;
2701ace3abfcSBarry Smith     PetscBool         hasop;
270220f1ed55SBarry Smith     const PetscScalar *diag;
2703887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
270420f1ed55SBarry Smith     PetscInt          i,n;
2705fa22f6d0SBarry Smith 
2706fa22f6d0SBarry Smith     if (!mat->xx1) {
2707fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2708fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2709fa22f6d0SBarry Smith     }
2710fa22f6d0SBarry Smith     xx1 = mat->xx1;
2711fa22f6d0SBarry Smith     bb1 = mat->bb1;
2712fa22f6d0SBarry Smith 
271341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2714fa22f6d0SBarry Smith 
2715fa22f6d0SBarry Smith     if (!mat->diag) {
2716effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27172a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2718fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2719fa22f6d0SBarry Smith     }
2720fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2721fa22f6d0SBarry Smith 
2722fa22f6d0SBarry Smith     if (hasop) {
2723fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2724887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
272520f1ed55SBarry Smith     } else {
272620f1ed55SBarry Smith       /*
272720f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
272820f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2729887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
273020f1ed55SBarry Smith       */
273120f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27323649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27333649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
273420f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
273520f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2736887ee2caSBarry Smith       if (omega == 1.0) {
273726fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
273820f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2739887ee2caSBarry Smith       } else {
274026fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2741887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2742887ee2caSBarry Smith       }
274320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27443649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27453649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
274620f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
274720f1ed55SBarry Smith     }
2748fa22f6d0SBarry Smith 
2749fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2750fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2751fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2752fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2753fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2754fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2755fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2756fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2757fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2758fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2759effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2760fa22f6d0SBarry Smith 
2761fa22f6d0SBarry Smith     /* local sweep */
276241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2763fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2764f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2765ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2766ffe4fb16SHong Zhang }
2767ffe4fb16SHong Zhang 
2768ffe4fb16SHong Zhang #undef __FUNCT__
276941f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
277041f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2771ffe4fb16SHong Zhang {
2772ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2773dfbe8321SBarry Smith   PetscErrorCode ierr;
27742798e883SHong Zhang   Vec            lvec1,bb1;
27752798e883SHong Zhang 
27762798e883SHong Zhang   PetscFunctionBegin;
2777e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2778e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27792798e883SHong Zhang 
2780c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
27812798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
278241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27832798e883SHong Zhang       its--;
27842798e883SHong Zhang     }
27852798e883SHong Zhang 
27862798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27872798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27882798e883SHong Zhang     while (its--) {
2789ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27902798e883SHong Zhang 
27912798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27922798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2793efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27942798e883SHong Zhang 
2795ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27962798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2797ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27982798e883SHong Zhang 
27992798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2800efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
28012798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
28022798e883SHong Zhang 
2803ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
28042798e883SHong Zhang 
2805c14dc6b6SHong Zhang       /* diagonal sweep */
280641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
28072798e883SHong Zhang     }
28086bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
28096bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
28106bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
28112798e883SHong Zhang   PetscFunctionReturn(0);
28122798e883SHong Zhang }
28132798e883SHong Zhang 
2814dfb205c3SBarry Smith #undef __FUNCT__
2815dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2816dfb205c3SBarry Smith /*@
2817dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2818dfb205c3SBarry Smith          CSR format the local rows.
2819dfb205c3SBarry Smith 
2820dfb205c3SBarry Smith    Collective on MPI_Comm
2821dfb205c3SBarry Smith 
2822dfb205c3SBarry Smith    Input Parameters:
2823dfb205c3SBarry Smith +  comm - MPI communicator
2824dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2825dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2826dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2827dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2828dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2829dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2830dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2831dfb205c3SBarry Smith .   i - row indices
2832dfb205c3SBarry Smith .   j - column indices
2833dfb205c3SBarry Smith -   a - matrix values
2834dfb205c3SBarry Smith 
2835dfb205c3SBarry Smith    Output Parameter:
2836dfb205c3SBarry Smith .   mat - the matrix
2837dfb205c3SBarry Smith 
2838dfb205c3SBarry Smith    Level: intermediate
2839dfb205c3SBarry Smith 
2840dfb205c3SBarry Smith    Notes:
2841dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2842dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2843dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2844dfb205c3SBarry Smith 
2845dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2846dfb205c3SBarry Smith 
2847dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2848dfb205c3SBarry Smith 
2849dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
285069b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2851dfb205c3SBarry Smith @*/
28527087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2853dfb205c3SBarry Smith {
2854dfb205c3SBarry Smith   PetscErrorCode ierr;
2855dfb205c3SBarry Smith 
2856dfb205c3SBarry Smith 
2857dfb205c3SBarry Smith   PetscFunctionBegin;
2858f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2859dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2860dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2861dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2862dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2863dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2864dfb205c3SBarry Smith   PetscFunctionReturn(0);
2865dfb205c3SBarry Smith }
2866dfb205c3SBarry Smith 
2867dfb205c3SBarry Smith 
2868dfb205c3SBarry Smith #undef __FUNCT__
2869dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2870dfb205c3SBarry Smith /*@C
2871dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2872dfb205c3SBarry Smith    (the default parallel PETSc format).
2873dfb205c3SBarry Smith 
2874dfb205c3SBarry Smith    Collective on MPI_Comm
2875dfb205c3SBarry Smith 
2876dfb205c3SBarry Smith    Input Parameters:
28771c4f3114SJed Brown +  B - the matrix
2878dfb205c3SBarry Smith .  bs - the block size
2879dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2880dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2881dfb205c3SBarry Smith -  v - optional values in the matrix
2882dfb205c3SBarry Smith 
2883dfb205c3SBarry Smith    Level: developer
2884dfb205c3SBarry Smith 
2885dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2886dfb205c3SBarry Smith 
288769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2888dfb205c3SBarry Smith @*/
28897087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2890dfb205c3SBarry Smith {
28914ac538c5SBarry Smith   PetscErrorCode ierr;
2892dfb205c3SBarry Smith 
2893dfb205c3SBarry Smith   PetscFunctionBegin;
28944ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2895dfb205c3SBarry Smith   PetscFunctionReturn(0);
2896dfb205c3SBarry Smith }
2897dfb205c3SBarry Smith 
2898de4b53ebSHong Zhang #undef __FUNCT__
289910c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
290010c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
29014dcd73b1SHong Zhang {
29024dcd73b1SHong Zhang   PetscErrorCode ierr;
290310c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
290410c56fdeSHong Zhang   PetscInt       *indx;
290510c56fdeSHong Zhang   PetscScalar    *values;
2906dfb205c3SBarry Smith 
29074dcd73b1SHong Zhang   PetscFunctionBegin;
29084dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
290910c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
291010c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
291110c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
291210c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
29134dcd73b1SHong Zhang 
291410c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
291510c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
291610c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
291710c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
291810c56fdeSHong Zhang     }
291910c56fdeSHong Zhang     /* Check sum(n) = Nbs */
292010c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
292110c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
292210c56fdeSHong Zhang 
292310c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
292410c56fdeSHong Zhang     rstart -= mbs;
29254dcd73b1SHong Zhang 
29264dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
292710c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
2928e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
292910c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
29304dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
29314dcd73b1SHong Zhang       nnz = nnz/bs;
29324dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
29334dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
29344dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
29354dcd73b1SHong Zhang     }
2936e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
29374dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
29384dcd73b1SHong Zhang 
29394dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
294010c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
29414dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
29424dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
29434dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
29444dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29454dcd73b1SHong Zhang   }
29464dcd73b1SHong Zhang 
294710c56fdeSHong Zhang   /* numeric phase */
29484dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
294910c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
29504dcd73b1SHong Zhang 
2951e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
29524dcd73b1SHong Zhang   for (i=0; i<m; i++) {
29534dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29544dcd73b1SHong Zhang     Ii   = i + rstart;
295510c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
29564dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29574dcd73b1SHong Zhang   }
2958e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
295910c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296010c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29614dcd73b1SHong Zhang   PetscFunctionReturn(0);
29624dcd73b1SHong Zhang }
2963