xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 6de40e93f7fa937d4b68504bc6a00c1ee0f50569)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
104a2ae208SSatish Balay #undef __FUNCT__
114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
13a30f8f8cSSatish Balay {
14f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
15dfbe8321SBarry Smith   PetscErrorCode ierr;
16a30f8f8cSSatish Balay 
17a30f8f8cSSatish Balay   PetscFunctionBegin;
18a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
19a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
20a30f8f8cSSatish Balay   PetscFunctionReturn(0);
21a30f8f8cSSatish Balay }
22a30f8f8cSSatish Balay 
234a2ae208SSatish Balay #undef __FUNCT__
244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
257087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
26a30f8f8cSSatish Balay {
27f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
28dfbe8321SBarry Smith   PetscErrorCode ierr;
29a30f8f8cSSatish Balay 
30a30f8f8cSSatish Balay   PetscFunctionBegin;
31a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
32a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   PetscFunctionReturn(0);
34a30f8f8cSSatish Balay }
35a30f8f8cSSatish Balay 
36d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
37a30f8f8cSSatish Balay   { \
38a30f8f8cSSatish Balay  \
39a30f8f8cSSatish Balay     brow = row/bs;  \
40a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
41a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
42a30f8f8cSSatish Balay     bcol = col/bs; \
43a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
44a30f8f8cSSatish Balay     low  = 0; high = nrow; \
45a30f8f8cSSatish Balay     while (high-low > 3) { \
46a30f8f8cSSatish Balay       t = (low+high)/2; \
47a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
48a30f8f8cSSatish Balay       else              low  = t; \
49a30f8f8cSSatish Balay     } \
50a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
51a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
52a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
53a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
54a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
55a30f8f8cSSatish Balay         else                    *bap  = value;  \
56a30f8f8cSSatish Balay         goto a_noinsert; \
57a30f8f8cSSatish Balay       } \
58a30f8f8cSSatish Balay     } \
59a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
60d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
61fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
62a30f8f8cSSatish Balay     N = nrow++ - 1;  \
63a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
64a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
65a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
66a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
67a30f8f8cSSatish Balay     } \
68a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
69a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
70a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
71e56f5c9eSBarry Smith     A->nonzerostate++;\
72a30f8f8cSSatish Balay a_noinsert:; \
73a30f8f8cSSatish Balay     ailen[brow] = nrow; \
74a30f8f8cSSatish Balay   }
75e5e170daSBarry Smith 
76d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
77a30f8f8cSSatish Balay   { \
78a30f8f8cSSatish Balay     brow = row/bs;  \
79a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
80a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
81a30f8f8cSSatish Balay     bcol = col/bs; \
82a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
83a30f8f8cSSatish Balay     low  = 0; high = nrow; \
84a30f8f8cSSatish Balay     while (high-low > 3) { \
85a30f8f8cSSatish Balay       t = (low+high)/2; \
86a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
87a30f8f8cSSatish Balay       else              low  = t; \
88a30f8f8cSSatish Balay     } \
89a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
90a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
91a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
92a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
93a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
94a30f8f8cSSatish Balay         else                    *bap  = value;  \
95a30f8f8cSSatish Balay         goto b_noinsert; \
96a30f8f8cSSatish Balay       } \
97a30f8f8cSSatish Balay     } \
98a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
99d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
100fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
101a30f8f8cSSatish Balay     N = nrow++ - 1;  \
102a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
103a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
104a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
105a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
106a30f8f8cSSatish Balay     } \
107a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
108a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
109a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
110e56f5c9eSBarry Smith     B->nonzerostate++;\
111a30f8f8cSSatish Balay b_noinsert:; \
112a30f8f8cSSatish Balay     bilen[brow] = nrow; \
113a30f8f8cSSatish Balay   }
114a30f8f8cSSatish Balay 
115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
116a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
117a30f8f8cSSatish Balay */
1184a2ae208SSatish Balay #undef __FUNCT__
119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
121a30f8f8cSSatish Balay {
122a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
123a30f8f8cSSatish Balay   MatScalar      value;
124ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
125dfbe8321SBarry Smith   PetscErrorCode ierr;
1261302d50aSBarry Smith   PetscInt       i,j,row,col;
127d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
128d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
129d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   /* Some Variables required in the macro */
132a30f8f8cSSatish Balay   Mat          A     = baij->A;
133a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1341302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
135a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
136a30f8f8cSSatish Balay 
137a30f8f8cSSatish Balay   Mat         B     = baij->B;
138a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1391302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
140a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
141a30f8f8cSSatish Balay 
1421302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1431302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
144a30f8f8cSSatish Balay   MatScalar *ap,*bap;
145a30f8f8cSSatish Balay 
146a30f8f8cSSatish Balay   /* for stash */
1470298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1480298fd71SBarry Smith   MatScalar *v_loc = NULL;
149a30f8f8cSSatish Balay 
150a30f8f8cSSatish Balay   PetscFunctionBegin;
151a30f8f8cSSatish Balay   if (!baij->donotstash) {
15259ffdab8SBarry Smith     if (n > baij->n_loc) {
15359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
15459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
155785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
156785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15726fbe8dcSKarl Rupp 
15859ffdab8SBarry Smith       baij->n_loc = n;
15959ffdab8SBarry Smith     }
16059ffdab8SBarry Smith     in_loc = baij->in_loc;
16159ffdab8SBarry Smith     v_loc  = baij->v_loc;
162a30f8f8cSSatish Balay   }
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
165a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
167e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
168a30f8f8cSSatish Balay #endif
169a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
170a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
171a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
17201b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
17301b2bd88SHong Zhang           if (a->ignore_ltriangular) {
17401b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
17526fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17601b2bd88SHong Zhang         }
177a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
178a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
179a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
180a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
181db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
182db4deed7SKarl Rupp           else             value = v[i+j*m];
183d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
184a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
185a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
187cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
188a30f8f8cSSatish Balay #endif
189a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
190a30f8f8cSSatish Balay           if (mat->was_assembled) {
191a30f8f8cSSatish Balay             if (!baij->colmap) {
192ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
193a30f8f8cSSatish Balay             }
194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
195a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19671730473SSatish Balay             col  = col - 1;
197a30f8f8cSSatish Balay #else
19871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
199a30f8f8cSSatish Balay #endif
200a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
201ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
202a30f8f8cSSatish Balay               col  =  in[j];
203a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
204a30f8f8cSSatish Balay               B    = baij->B;
205a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
206a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
207a30f8f8cSSatish Balay               ba   = b->a;
20871730473SSatish Balay             } else col += in[j]%bs;
209a30f8f8cSSatish Balay           } else col = in[j];
210db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
211db4deed7SKarl Rupp           else             value = v[i+j*m];
212d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
213a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
214a30f8f8cSSatish Balay         }
215a30f8f8cSSatish Balay       }
216a30f8f8cSSatish Balay     } else {  /* off processor entry */
2174cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
218a30f8f8cSSatish Balay       if (!baij->donotstash) {
2195080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
220a30f8f8cSSatish Balay         n_loc          = 0;
221a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
222f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
223a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
224a30f8f8cSSatish Balay           if (roworiented) {
225a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
226a30f8f8cSSatish Balay           } else {
227a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
228a30f8f8cSSatish Balay           }
229a30f8f8cSSatish Balay           n_loc++;
230a30f8f8cSSatish Balay         }
231b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     }
234a30f8f8cSSatish Balay   }
235a30f8f8cSSatish Balay   PetscFunctionReturn(0);
236a30f8f8cSSatish Balay }
237a30f8f8cSSatish Balay 
2384a2ae208SSatish Balay #undef __FUNCT__
23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined"
24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
24136bd2089SBarry Smith {
24236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
24336bd2089SBarry Smith   PetscErrorCode    ierr;
24436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
24536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
24636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
24736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
24836bd2089SBarry Smith   const PetscScalar *value     = v;
24936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
25036bd2089SBarry Smith 
25136bd2089SBarry Smith   PetscFunctionBegin;
25236bd2089SBarry Smith   if (col < row) {
25336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
25436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
25536bd2089SBarry Smith   }
25636bd2089SBarry Smith   rp   = aj + ai[row];
25736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
25836bd2089SBarry Smith   rmax = imax[row];
25936bd2089SBarry Smith   nrow = ailen[row];
26036bd2089SBarry Smith   value = v;
26136bd2089SBarry Smith   low   = 0;
26236bd2089SBarry Smith   high  = nrow;
26336bd2089SBarry Smith 
26436bd2089SBarry Smith   while (high-low > 7) {
26536bd2089SBarry Smith     t = (low+high)/2;
26636bd2089SBarry Smith     if (rp[t] > col) high = t;
26736bd2089SBarry Smith     else             low  = t;
26836bd2089SBarry Smith   }
26936bd2089SBarry Smith   for (i=low; i<high; i++) {
27036bd2089SBarry Smith     if (rp[i] > col) break;
27136bd2089SBarry Smith     if (rp[i] == col) {
27236bd2089SBarry Smith       bap = ap +  bs2*i;
27336bd2089SBarry Smith       if (roworiented) {
27436bd2089SBarry Smith         if (is == ADD_VALUES) {
27536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
27636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
27736bd2089SBarry Smith               bap[jj] += *value++;
27836bd2089SBarry Smith             }
27936bd2089SBarry Smith           }
28036bd2089SBarry Smith         } else {
28136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
28336bd2089SBarry Smith               bap[jj] = *value++;
28436bd2089SBarry Smith             }
28536bd2089SBarry Smith           }
28636bd2089SBarry Smith         }
28736bd2089SBarry Smith       } else {
28836bd2089SBarry Smith         if (is == ADD_VALUES) {
28936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29136bd2089SBarry Smith               *bap++ += *value++;
29236bd2089SBarry Smith             }
29336bd2089SBarry Smith           }
29436bd2089SBarry Smith         } else {
29536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
29636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
29736bd2089SBarry Smith               *bap++  = *value++;
29836bd2089SBarry Smith             }
29936bd2089SBarry Smith           }
30036bd2089SBarry Smith         }
30136bd2089SBarry Smith       }
30236bd2089SBarry Smith       goto noinsert2;
30336bd2089SBarry Smith     }
30436bd2089SBarry Smith   }
30536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
30636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
30736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
30836bd2089SBarry Smith   N = nrow++ - 1; high++;
30936bd2089SBarry Smith   /* shift up all the later entries in this row */
31036bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
31136bd2089SBarry Smith     rp[ii+1] = rp[ii];
31236bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
31336bd2089SBarry Smith   }
31436bd2089SBarry Smith   if (N >= i) {
31536bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
31636bd2089SBarry Smith   }
31736bd2089SBarry Smith   rp[i] = col;
31836bd2089SBarry Smith   bap   = ap +  bs2*i;
31936bd2089SBarry Smith   if (roworiented) {
32036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32136bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
32236bd2089SBarry Smith         bap[jj] = *value++;
32336bd2089SBarry Smith       }
32436bd2089SBarry Smith     }
32536bd2089SBarry Smith   } else {
32636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
32736bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
32836bd2089SBarry Smith         *bap++ = *value++;
32936bd2089SBarry Smith       }
33036bd2089SBarry Smith     }
33136bd2089SBarry Smith   }
33236bd2089SBarry Smith   noinsert2:;
33336bd2089SBarry Smith   ailen[row] = nrow;
33436bd2089SBarry Smith   PetscFunctionReturn(0);
33536bd2089SBarry Smith }
33636bd2089SBarry Smith 
33736bd2089SBarry Smith #undef __FUNCT__
33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
33936bd2089SBarry Smith /*
34036bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
34136bd2089SBarry Smith */
34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34336bd2089SBarry Smith {
34436bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
34536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34636bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
34736bd2089SBarry Smith   PetscErrorCode    ierr;
34836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
35036bd2089SBarry Smith   const PetscScalar *value     = v;
35136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35236bd2089SBarry Smith 
35336bd2089SBarry Smith   PetscFunctionBegin;
35436bd2089SBarry Smith   rp   = aj + ai[row];
35536bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35636bd2089SBarry Smith   rmax = imax[row];
35736bd2089SBarry Smith   nrow = ailen[row];
35836bd2089SBarry Smith   low  = 0;
35936bd2089SBarry Smith   high = nrow;
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   while (high-low > 7) {
36236bd2089SBarry Smith     t = (low+high)/2;
36336bd2089SBarry Smith     if (rp[t] > col) high = t;
36436bd2089SBarry Smith     else             low  = t;
36536bd2089SBarry Smith   }
36636bd2089SBarry Smith   for (i=low; i<high; i++) {
36736bd2089SBarry Smith     if (rp[i] > col) break;
36836bd2089SBarry Smith     if (rp[i] == col) {
36936bd2089SBarry Smith       bap = ap +  bs2*i;
37036bd2089SBarry Smith       if (roworiented) {
37136bd2089SBarry Smith         if (is == ADD_VALUES) {
37236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37436bd2089SBarry Smith               bap[jj] += *value++;
37536bd2089SBarry Smith             }
37636bd2089SBarry Smith           }
37736bd2089SBarry Smith         } else {
37836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38036bd2089SBarry Smith               bap[jj] = *value++;
38136bd2089SBarry Smith             }
38236bd2089SBarry Smith           }
38336bd2089SBarry Smith         }
38436bd2089SBarry Smith       } else {
38536bd2089SBarry Smith         if (is == ADD_VALUES) {
38636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
38736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38836bd2089SBarry Smith               bap[jj] += value[jj];
38936bd2089SBarry Smith             }
39036bd2089SBarry Smith             bap += bs;
39136bd2089SBarry Smith           }
39236bd2089SBarry Smith         } else {
39336bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
39436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39536bd2089SBarry Smith               bap[jj]  = value[jj];
39636bd2089SBarry Smith             }
39736bd2089SBarry Smith             bap += bs;
39836bd2089SBarry Smith           }
39936bd2089SBarry Smith         }
40036bd2089SBarry Smith       }
40136bd2089SBarry Smith       goto noinsert2;
40236bd2089SBarry Smith     }
40336bd2089SBarry Smith   }
40436bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40536bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
40636bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40736bd2089SBarry Smith   N = nrow++ - 1; high++;
40836bd2089SBarry Smith   /* shift up all the later entries in this row */
40936bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
41036bd2089SBarry Smith     rp[ii+1] = rp[ii];
41136bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
41236bd2089SBarry Smith   }
41336bd2089SBarry Smith   if (N >= i) {
41436bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
41536bd2089SBarry Smith   }
41636bd2089SBarry Smith   rp[i] = col;
41736bd2089SBarry Smith   bap   = ap +  bs2*i;
41836bd2089SBarry Smith   if (roworiented) {
41936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
42136bd2089SBarry Smith         bap[jj] = *value++;
42236bd2089SBarry Smith       }
42336bd2089SBarry Smith     }
42436bd2089SBarry Smith   } else {
42536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42736bd2089SBarry Smith         *bap++ = *value++;
42836bd2089SBarry Smith       }
42936bd2089SBarry Smith     }
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   noinsert2:;
43236bd2089SBarry Smith   ailen[row] = nrow;
43336bd2089SBarry Smith   PetscFunctionReturn(0);
43436bd2089SBarry Smith }
43536bd2089SBarry Smith 
43636bd2089SBarry Smith #undef __FUNCT__
437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
43836bd2089SBarry Smith /*
43936bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
44036bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
44136bd2089SBarry Smith */
442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
443a30f8f8cSSatish Balay {
4440880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
445f15d580aSBarry Smith   const MatScalar *value;
446f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
447ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
448dfbe8321SBarry Smith   PetscErrorCode  ierr;
449899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
450899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
451d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4520880e062SHong Zhang 
453a30f8f8cSSatish Balay   PetscFunctionBegin;
4540880e062SHong Zhang   if (!barray) {
455785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4560880e062SHong Zhang     baij->barray = barray;
4570880e062SHong Zhang   }
4580880e062SHong Zhang 
4590880e062SHong Zhang   if (roworiented) {
4600880e062SHong Zhang     stepval = (n-1)*bs;
4610880e062SHong Zhang   } else {
4620880e062SHong Zhang     stepval = (m-1)*bs;
4630880e062SHong Zhang   }
4640880e062SHong Zhang   for (i=0; i<m; i++) {
4650880e062SHong Zhang     if (im[i] < 0) continue;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4680880e062SHong Zhang #endif
4690880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4700880e062SHong Zhang       row = im[i] - rstart;
4710880e062SHong Zhang       for (j=0; j<n; j++) {
472f3f98c53SJed Brown         if (im[i] > in[j]) {
473f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
474e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
475f3f98c53SJed Brown         }
4760880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4770880e062SHong Zhang         if ((roworiented) && (n == 1)) {
478f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4790880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
480f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4810880e062SHong Zhang         } else { /* Here a copy is required */
4820880e062SHong Zhang           if (roworiented) {
4830880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4840880e062SHong Zhang           } else {
4850880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4860880e062SHong Zhang           }
4870880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4880880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4890880e062SHong Zhang               *barray++ = *value++;
4900880e062SHong Zhang             }
4910880e062SHong Zhang           }
4920880e062SHong Zhang           barray -=bs2;
4930880e062SHong Zhang         }
4940880e062SHong Zhang 
4950880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4960880e062SHong Zhang           col  = in[j] - cstart;
49736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
49826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
500bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5010880e062SHong Zhang #endif
5020880e062SHong Zhang         else {
5030880e062SHong Zhang           if (mat->was_assembled) {
5040880e062SHong Zhang             if (!baij->colmap) {
505ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5060880e062SHong Zhang             }
5070880e062SHong Zhang 
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5101302d50aSBarry Smith             { PetscInt data;
5110880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
512e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5130880e062SHong Zhang             }
5140880e062SHong Zhang #else
515e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5160880e062SHong Zhang #endif
5170880e062SHong Zhang #endif
5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5190880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5200880e062SHong Zhang             col  = (col - 1)/bs;
5210880e062SHong Zhang #else
5220880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5230880e062SHong Zhang #endif
5240880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
525ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5260880e062SHong Zhang               col  = in[j];
5270880e062SHong Zhang             }
52826fbe8dcSKarl Rupp           } else col = in[j];
52936bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5300880e062SHong Zhang         }
5310880e062SHong Zhang       }
5320880e062SHong Zhang     } else {
533bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5340880e062SHong Zhang       if (!baij->donotstash) {
5350880e062SHong Zhang         if (roworiented) {
5360880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5370880e062SHong Zhang         } else {
5380880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5390880e062SHong Zhang         }
5400880e062SHong Zhang       }
5410880e062SHong Zhang     }
5420880e062SHong Zhang   }
5430880e062SHong Zhang   PetscFunctionReturn(0);
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
552d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
553d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
558e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
563e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
565a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data--;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay   PetscFunctionReturn(0);
587a30f8f8cSSatish Balay }
588a30f8f8cSSatish Balay 
5894a2ae208SSatish Balay #undef __FUNCT__
5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
592a30f8f8cSSatish Balay {
593a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
594dfbe8321SBarry Smith   PetscErrorCode ierr;
595a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
596a30f8f8cSSatish Balay 
597a30f8f8cSSatish Balay   PetscFunctionBegin;
598a30f8f8cSSatish Balay   if (baij->size == 1) {
599a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
600a30f8f8cSSatish Balay   } else {
601a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
602785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
603a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
604a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
605a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
607ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6088f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
609a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6100b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6110b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6120b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6130b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
614899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
615d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6160b8dc8d2SHong Zhang       MatScalar    *v;
6170b8dc8d2SHong Zhang 
618dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
619d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6200b8dc8d2SHong Zhang       /* Amat */
6210b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6220b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6230b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6240b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6250b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6260b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6270b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6280b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6290b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6300b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6310b8dc8d2SHong Zhang               /* non-diagonal block */
6320b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6330b8dc8d2SHong Zhang             }
6340b8dc8d2SHong Zhang           }
6350b8dc8d2SHong Zhang         }
6360b8dc8d2SHong Zhang       }
6370b8dc8d2SHong Zhang       /* Bmat */
6380b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6410b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6430b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6440b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6450b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6460b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6480b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6490b8dc8d2SHong Zhang             }
6500b8dc8d2SHong Zhang           }
6510b8dc8d2SHong Zhang         }
6520b8dc8d2SHong Zhang       }
653ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6540b8dc8d2SHong Zhang       *norm = 0.0;
655d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6560b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6570b8dc8d2SHong Zhang       }
65874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
659f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
660a30f8f8cSSatish Balay   }
661a30f8f8cSSatish Balay   PetscFunctionReturn(0);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
6644a2ae208SSatish Balay #undef __FUNCT__
6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
667a30f8f8cSSatish Balay {
668a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
669dfbe8321SBarry Smith   PetscErrorCode ierr;
6701302d50aSBarry Smith   PetscInt       nstash,reallocs;
671a30f8f8cSSatish Balay   InsertMode     addv;
672a30f8f8cSSatish Balay 
673a30f8f8cSSatish Balay   PetscFunctionBegin;
67426fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
677ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
678ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
679a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
680a30f8f8cSSatish Balay 
681d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6821e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
683a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6841e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
685a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6861e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
687a30f8f8cSSatish Balay   PetscFunctionReturn(0);
688a30f8f8cSSatish Balay }
689a30f8f8cSSatish Balay 
6904a2ae208SSatish Balay #undef __FUNCT__
6914a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
692dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
693a30f8f8cSSatish Balay {
694a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
695a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6966849ba73SBarry Smith   PetscErrorCode ierr;
69713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
698e44c0bd4SBarry Smith   PetscInt       *row,*col;
699ace3abfcSBarry Smith   PetscBool      other_disassembled;
70013f74950SBarry Smith   PetscMPIInt    n;
701ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
702a30f8f8cSSatish Balay   MatScalar      *val;
703a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
704a30f8f8cSSatish Balay 
70591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
706a30f8f8cSSatish Balay   PetscFunctionBegin;
7074cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
708a30f8f8cSSatish Balay     while (1) {
709a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
710a30f8f8cSSatish Balay       if (!flg) break;
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay       for (i=0; i<n;) {
713a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
71426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
71526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
71626fbe8dcSKarl Rupp         }
717a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
718a30f8f8cSSatish Balay         else       ncols = n-i;
719a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
720dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
721a30f8f8cSSatish Balay         i    = j;
722a30f8f8cSSatish Balay       }
723a30f8f8cSSatish Balay     }
724a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
725a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
726a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
727a30f8f8cSSatish Balay        restore the original flags */
728a30f8f8cSSatish Balay     r1 = baij->roworiented;
729a30f8f8cSSatish Balay     r2 = a->roworiented;
73091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
73126fbe8dcSKarl Rupp 
732a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
733a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
73426fbe8dcSKarl Rupp 
73591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
736a30f8f8cSSatish Balay     while (1) {
737a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
738a30f8f8cSSatish Balay       if (!flg) break;
739a30f8f8cSSatish Balay 
740a30f8f8cSSatish Balay       for (i=0; i<n;) {
741a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
74226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
74326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
74426fbe8dcSKarl Rupp         }
745a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
746a30f8f8cSSatish Balay         else       ncols = n-i;
747dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
748a30f8f8cSSatish Balay         i    = j;
749a30f8f8cSSatish Balay       }
750a30f8f8cSSatish Balay     }
751a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
75226fbe8dcSKarl Rupp 
753a30f8f8cSSatish Balay     baij->roworiented = r1;
754a30f8f8cSSatish Balay     a->roworiented    = r2;
75526fbe8dcSKarl Rupp 
75691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
757a30f8f8cSSatish Balay   }
758a30f8f8cSSatish Balay 
759a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
761a30f8f8cSSatish Balay 
762a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
763a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
764a30f8f8cSSatish Balay   /*
765a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
766a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
767a30f8f8cSSatish Balay   */
768a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
769ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
770a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
771ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     }
773a30f8f8cSSatish Balay   }
774a30f8f8cSSatish Balay 
775a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
77640781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
777a30f8f8cSSatish Balay   }
778a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
779a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
780a30f8f8cSSatish Balay 
78174ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
78226fbe8dcSKarl Rupp 
783a30f8f8cSSatish Balay   baij->rowvalues = 0;
7844f9cfa9eSBarry Smith 
7854f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7864f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
787e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
78809e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
789e56f5c9eSBarry Smith   }
790a30f8f8cSSatish Balay   PetscFunctionReturn(0);
791a30f8f8cSSatish Balay }
792a30f8f8cSSatish Balay 
7937da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
794dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7959804daf3SBarry Smith #include <petscdraw.h>
7964a2ae208SSatish Balay #undef __FUNCT__
7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7986849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
799a30f8f8cSSatish Balay {
800a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
801dfbe8321SBarry Smith   PetscErrorCode    ierr;
802d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8037da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
804ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
805b0a32e0cSBarry Smith   PetscViewer       sviewer;
806f3ef73ceSBarry Smith   PetscViewerFormat format;
807a30f8f8cSSatish Balay 
808a30f8f8cSSatish Balay   PetscFunctionBegin;
809251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
810251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
81132077d6dSBarry Smith   if (iascii) {
812b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
813456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
814a30f8f8cSSatish Balay       MatInfo info;
815ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
816a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8177b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
8187b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
819a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
820e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
821a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
822e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
823b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8247b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
82507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
826a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
827a30f8f8cSSatish Balay       PetscFunctionReturn(0);
828fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
82977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
830a30f8f8cSSatish Balay       PetscFunctionReturn(0);
831c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
832c1490034SHong Zhang       PetscFunctionReturn(0);
833a30f8f8cSSatish Balay     }
834a30f8f8cSSatish Balay   }
835a30f8f8cSSatish Balay 
836a30f8f8cSSatish Balay   if (isdraw) {
837b0a32e0cSBarry Smith     PetscDraw draw;
838ace3abfcSBarry Smith     PetscBool isnull;
839b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
840b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
841a30f8f8cSSatish Balay   }
842a30f8f8cSSatish Balay 
8437da1fb6eSBarry Smith   {
844a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
845a30f8f8cSSatish Balay     Mat          A;
84665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
848d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
849a30f8f8cSSatish Balay     MatScalar    *a;
8503e219373SBarry Smith     const char   *matname;
851a30f8f8cSSatish Balay 
852f204ca49SKris Buschelman     /* Should this be the same type as mat? */
853ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
854a30f8f8cSSatish Balay     if (!rank) {
855f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
856a30f8f8cSSatish Balay     } else {
857f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
858a30f8f8cSSatish Balay     }
859f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8600298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8612b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8623bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
863a30f8f8cSSatish Balay 
864a30f8f8cSSatish Balay     /* copy over the A part */
86565d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
866a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
867785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
868a30f8f8cSSatish Balay 
869a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
870e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
87126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
872a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
873e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
874a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
875dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
87626fbe8dcSKarl Rupp           col++;
87726fbe8dcSKarl Rupp           a += bs;
878a30f8f8cSSatish Balay         }
879a30f8f8cSSatish Balay       }
880a30f8f8cSSatish Balay     }
881a30f8f8cSSatish Balay     /* copy over the B part */
88265d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
88365d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
884a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
885e9f7bc9eSHong Zhang 
886e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
88726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
888a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
889a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
890a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
891799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
89226fbe8dcSKarl Rupp           col++;
89326fbe8dcSKarl Rupp           a += bs;
894a30f8f8cSSatish Balay         }
895a30f8f8cSSatish Balay       }
896a30f8f8cSSatish Balay     }
897a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
898a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
899a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
900a30f8f8cSSatish Balay     /*
901a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
902b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
903a30f8f8cSSatish Balay     */
904b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
905ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9063e219373SBarry Smith     if (!rank) {
907ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
9087da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
909a30f8f8cSSatish Balay     }
910b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
9116bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
912a30f8f8cSSatish Balay   }
913a30f8f8cSSatish Balay   PetscFunctionReturn(0);
914a30f8f8cSSatish Balay }
915a30f8f8cSSatish Balay 
9164a2ae208SSatish Balay #undef __FUNCT__
9174a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
918dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
919a30f8f8cSSatish Balay {
920dfbe8321SBarry Smith   PetscErrorCode ierr;
921ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
922a30f8f8cSSatish Balay 
923a30f8f8cSSatish Balay   PetscFunctionBegin;
924251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
925251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
926251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
927251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
92832077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
929a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
930a30f8f8cSSatish Balay   }
931a30f8f8cSSatish Balay   PetscFunctionReturn(0);
932a30f8f8cSSatish Balay }
933a30f8f8cSSatish Balay 
9344a2ae208SSatish Balay #undef __FUNCT__
9354a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
936dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
937a30f8f8cSSatish Balay {
938a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
939dfbe8321SBarry Smith   PetscErrorCode ierr;
940a30f8f8cSSatish Balay 
941a30f8f8cSSatish Balay   PetscFunctionBegin;
942a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
943d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
944a30f8f8cSSatish Balay #endif
945a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
946a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
9476bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
9486bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
949a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
9506bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
951a30f8f8cSSatish Balay #else
95205b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
953a30f8f8cSSatish Balay #endif
95405b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
9556bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
9566bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
9576bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
9586bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
9596bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
9606bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
9616bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
9626bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
9635755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
96405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
96505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
9666bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
9676bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
9686bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
969ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
97005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
971a30f8f8cSSatish Balay #endif
97259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
97359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
974899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
975bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
976901853e0SKris Buschelman 
977dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
978bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
979bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
980bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
981bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
982bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
9836214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
9846214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
9856214f412SHong Zhang #endif
986a30f8f8cSSatish Balay   PetscFunctionReturn(0);
987a30f8f8cSSatish Balay }
988a30f8f8cSSatish Balay 
9894a2ae208SSatish Balay #undef __FUNCT__
990547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
991547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
992547795f9SHong Zhang {
993547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
994547795f9SHong Zhang   PetscErrorCode    ierr;
995547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
996*6de40e93SBarry Smith   PetscScalar       *from;
997*6de40e93SBarry Smith   const PetscScalar *x;
998547795f9SHong Zhang 
999547795f9SHong Zhang   PetscFunctionBegin;
1000547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1001e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1002547795f9SHong Zhang 
1003547795f9SHong Zhang   /* diagonal part */
1004547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1005547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1006547795f9SHong Zhang 
1007547795f9SHong Zhang   /* subdiagonal part */
1008547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1009547795f9SHong Zhang 
1010547795f9SHong Zhang   /* copy x into the vec slvec0 */
1011547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1012*6de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1013547795f9SHong Zhang 
1014547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1015547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1016*6de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1017547795f9SHong Zhang 
1018547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1019547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1020547795f9SHong Zhang   /* supperdiagonal part */
1021547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1022547795f9SHong Zhang   PetscFunctionReturn(0);
1023547795f9SHong Zhang }
1024547795f9SHong Zhang 
1025547795f9SHong Zhang #undef __FUNCT__
1026a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
1027dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1028a9d4b620SHong Zhang {
1029a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1030dfbe8321SBarry Smith   PetscErrorCode    ierr;
1031d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1032d9ca1df4SBarry Smith   PetscScalar       *from;
1033d9ca1df4SBarry Smith   const PetscScalar *x;
1034a9d4b620SHong Zhang 
1035a9d4b620SHong Zhang   PetscFunctionBegin;
1036a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1037e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1038a9d4b620SHong Zhang 
1039a9d4b620SHong Zhang   /* diagonal part */
1040a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1041fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1042a9d4b620SHong Zhang 
1043a9d4b620SHong Zhang   /* subdiagonal part */
1044a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1045fc165ae2SBarry Smith 
1046a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10471ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1048d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1049a9d4b620SHong Zhang 
1050fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1051fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1052d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1053fc165ae2SBarry Smith 
1054fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1055ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1056a9d4b620SHong Zhang   /* supperdiagonal part */
1057a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1058a9d4b620SHong Zhang   PetscFunctionReturn(0);
1059a9d4b620SHong Zhang }
1060a9d4b620SHong Zhang 
1061a9d4b620SHong Zhang #undef __FUNCT__
106240781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
1063dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1064a30f8f8cSSatish Balay {
1065a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1066dfbe8321SBarry Smith   PetscErrorCode ierr;
10671302d50aSBarry Smith   PetscInt       nt;
1068a30f8f8cSSatish Balay 
1069a30f8f8cSSatish Balay   PetscFunctionBegin;
1070a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1071e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1072e7e72b3dSBarry Smith 
1073a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1074e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
107565d70643SHong Zhang 
1076ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1077b941877fSHong Zhang   /* do diagonal part */
1078b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1079b941877fSHong Zhang   /* do supperdiagonal part */
1080ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1081b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1082b941877fSHong Zhang   /* do subdiagonal part */
1083b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1084ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1085ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1086a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1087a30f8f8cSSatish Balay }
1088a30f8f8cSSatish Balay 
10894a2ae208SSatish Balay #undef __FUNCT__
10904a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1091dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1092a30f8f8cSSatish Balay {
1093de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1094dfbe8321SBarry Smith   PetscErrorCode    ierr;
1095d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1096d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1097d9ca1df4SBarry Smith   const PetscScalar *x;
1098a9d4b620SHong Zhang 
1099a9d4b620SHong Zhang   PetscFunctionBegin;
1100a9d4b620SHong Zhang   /*
1101ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
11020ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1103a9d4b620SHong Zhang   */
1104a9d4b620SHong Zhang   /* diagonal part */
1105a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11062dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1107a9d4b620SHong Zhang 
1108a9d4b620SHong Zhang   /* subdiagonal part */
1109a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1110a9d4b620SHong Zhang 
1111a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11121ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1113d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1114a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
11151ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1116a9d4b620SHong Zhang 
1117ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1118d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1119ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1120a9d4b620SHong Zhang 
1121a9d4b620SHong Zhang   /* supperdiagonal part */
1122a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1123a9d4b620SHong Zhang   PetscFunctionReturn(0);
1124a9d4b620SHong Zhang }
1125a9d4b620SHong Zhang 
1126a9d4b620SHong Zhang #undef __FUNCT__
1127a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1128dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1129a9d4b620SHong Zhang {
1130a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1131dfbe8321SBarry Smith   PetscErrorCode ierr;
1132a30f8f8cSSatish Balay 
1133a30f8f8cSSatish Balay   PetscFunctionBegin;
1134ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1135b941877fSHong Zhang   /* do diagonal part */
1136b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1137b941877fSHong Zhang   /* do supperdiagonal part */
1138ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1139de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1140de8b6608SHong Zhang 
1141b941877fSHong Zhang   /* do subdiagonal part */
1142a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1143ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1144ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1145a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1146a30f8f8cSSatish Balay }
1147a30f8f8cSSatish Balay 
1148a30f8f8cSSatish Balay /*
1149a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1150a30f8f8cSSatish Balay    diagonal block
1151a30f8f8cSSatish Balay */
11524a2ae208SSatish Balay #undef __FUNCT__
11534a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1154dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1155a30f8f8cSSatish Balay {
1156a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1157dfbe8321SBarry Smith   PetscErrorCode ierr;
1158a30f8f8cSSatish Balay 
1159a30f8f8cSSatish Balay   PetscFunctionBegin;
1160e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1161a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1162a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1163a30f8f8cSSatish Balay }
1164a30f8f8cSSatish Balay 
11654a2ae208SSatish Balay #undef __FUNCT__
11664a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1167f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1168a30f8f8cSSatish Balay {
1169a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1170dfbe8321SBarry Smith   PetscErrorCode ierr;
1171a30f8f8cSSatish Balay 
1172a30f8f8cSSatish Balay   PetscFunctionBegin;
1173f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1174f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1175a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1176a30f8f8cSSatish Balay }
1177a30f8f8cSSatish Balay 
11784a2ae208SSatish Balay #undef __FUNCT__
11794a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11801302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1181a30f8f8cSSatish Balay {
1182d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1183d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1184d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1185d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1186d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1187899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1188d0d4cfc2SHong Zhang 
1189a30f8f8cSSatish Balay   PetscFunctionBegin;
1190e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1191d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1192d0d4cfc2SHong Zhang 
1193d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1194d0d4cfc2SHong Zhang     /*
1195d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1196d0d4cfc2SHong Zhang     */
1197d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1198d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1199d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1200d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1201d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
120226fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1203d0d4cfc2SHong Zhang     }
1204dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1205d0d4cfc2SHong Zhang   }
1206d0d4cfc2SHong Zhang 
1207e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1208d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1209d0d4cfc2SHong Zhang 
1210d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1211d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1212d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1213d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1214d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1215d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1216d0d4cfc2SHong Zhang 
1217d0d4cfc2SHong Zhang   cmap = mat->garray;
1218d0d4cfc2SHong Zhang   if (v  || idx) {
1219d0d4cfc2SHong Zhang     if (nztot) {
1220d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1221d0d4cfc2SHong Zhang       PetscInt imark = -1;
1222d0d4cfc2SHong Zhang       if (v) {
1223d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1224d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1225d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1226d0d4cfc2SHong Zhang           else break;
1227d0d4cfc2SHong Zhang         }
1228d0d4cfc2SHong Zhang         imark = i;
1229d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1230d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1231d0d4cfc2SHong Zhang       }
1232d0d4cfc2SHong Zhang       if (idx) {
1233d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1234d0d4cfc2SHong Zhang         if (imark > -1) {
1235d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1236d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1237d0d4cfc2SHong Zhang           }
1238d0d4cfc2SHong Zhang         } else {
1239d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
124026fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1241d0d4cfc2SHong Zhang             else break;
1242d0d4cfc2SHong Zhang           }
1243d0d4cfc2SHong Zhang           imark = i;
1244d0d4cfc2SHong Zhang         }
1245d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1246d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1247d0d4cfc2SHong Zhang       }
1248d0d4cfc2SHong Zhang     } else {
1249d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1250d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1251d0d4cfc2SHong Zhang     }
1252d0d4cfc2SHong Zhang   }
1253d0d4cfc2SHong Zhang   *nz  = nztot;
1254d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1255d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1256a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1257a30f8f8cSSatish Balay }
1258a30f8f8cSSatish Balay 
12594a2ae208SSatish Balay #undef __FUNCT__
12604a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12611302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1262a30f8f8cSSatish Balay {
1263a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1264a30f8f8cSSatish Balay 
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1267a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1268a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1269a30f8f8cSSatish Balay }
1270a30f8f8cSSatish Balay 
12714a2ae208SSatish Balay #undef __FUNCT__
1272d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1273d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1274d0d4cfc2SHong Zhang {
1275d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1276d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1277d0d4cfc2SHong Zhang 
1278d0d4cfc2SHong Zhang   PetscFunctionBegin;
1279d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1280d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1281d0d4cfc2SHong Zhang }
1282d0d4cfc2SHong Zhang #undef __FUNCT__
1283d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1284d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1285d0d4cfc2SHong Zhang {
1286d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1287d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1288d0d4cfc2SHong Zhang 
1289d0d4cfc2SHong Zhang   PetscFunctionBegin;
1290d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1291d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1292d0d4cfc2SHong Zhang }
1293d0d4cfc2SHong Zhang 
1294d0d4cfc2SHong Zhang #undef __FUNCT__
129599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
129699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
129799cafbc1SBarry Smith {
129899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
129999cafbc1SBarry Smith   PetscErrorCode ierr;
130099cafbc1SBarry Smith 
130199cafbc1SBarry Smith   PetscFunctionBegin;
130299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
130399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
130499cafbc1SBarry Smith   PetscFunctionReturn(0);
130599cafbc1SBarry Smith }
130699cafbc1SBarry Smith 
130799cafbc1SBarry Smith #undef __FUNCT__
130899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
130999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
131099cafbc1SBarry Smith {
131199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
131299cafbc1SBarry Smith   PetscErrorCode ierr;
131399cafbc1SBarry Smith 
131499cafbc1SBarry Smith   PetscFunctionBegin;
131599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
131699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
131799cafbc1SBarry Smith   PetscFunctionReturn(0);
131899cafbc1SBarry Smith }
131999cafbc1SBarry Smith 
132036032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ()
132136032a97SHong Zhang    Input: isrow       - distributed(parallel),
132236032a97SHong Zhang           iscol_local - locally owned (seq)
132336032a97SHong Zhang */
132499cafbc1SBarry Smith #undef __FUNCT__
132536032a97SHong Zhang #define __FUNCT__ "ISEqual_private"
132636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13278f46ffcaSHong Zhang {
13288f46ffcaSHong Zhang   PetscErrorCode ierr;
13298f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13308f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
133136032a97SHong Zhang 
133236032a97SHong Zhang   PetscFunctionBegin;
13338f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13348f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13351098a8e8SHong Zhang   if (sz1 > sz2) {
13361098a8e8SHong Zhang     *flg = PETSC_FALSE;
13371098a8e8SHong Zhang     PetscFunctionReturn(0);
13381098a8e8SHong Zhang   }
13398f46ffcaSHong Zhang 
13408f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13418f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13428f46ffcaSHong Zhang 
13438f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13448f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
13458f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
13468f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
13478f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13488f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13498f46ffcaSHong Zhang 
13508f46ffcaSHong Zhang   nmatch=0;
13518f46ffcaSHong Zhang   k     = 0;
13528f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13538f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13548f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13558f46ffcaSHong Zhang         k = j; nmatch++;
13568f46ffcaSHong Zhang         break;
13578f46ffcaSHong Zhang       }
13588f46ffcaSHong Zhang     }
13598f46ffcaSHong Zhang   }
13608f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13618f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13628f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
13638f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
13641098a8e8SHong Zhang   if (nmatch < sz1) {
13651098a8e8SHong Zhang     *flg = PETSC_FALSE;
13661098a8e8SHong Zhang   } else {
13671098a8e8SHong Zhang     *flg = PETSC_TRUE;
13681098a8e8SHong Zhang   }
136936032a97SHong Zhang   PetscFunctionReturn(0);
13708f46ffcaSHong Zhang }
137136032a97SHong Zhang 
137236032a97SHong Zhang #undef __FUNCT__
137336032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
137436032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
137536032a97SHong Zhang {
137636032a97SHong Zhang   PetscErrorCode ierr;
137736032a97SHong Zhang   IS             iscol_local;
137836032a97SHong Zhang   PetscInt       csize;
137936032a97SHong Zhang   PetscBool      isequal;
138036032a97SHong Zhang 
138136032a97SHong Zhang   PetscFunctionBegin;
138236032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
138336032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
138436032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
138536032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
138636032a97SHong Zhang   } else {
138736032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
138836032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
138936032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
13908f46ffcaSHong Zhang   }
13918f46ffcaSHong Zhang 
13928f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
139336032a97SHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
13948f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
13958f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
13968f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
13978f46ffcaSHong Zhang   }
13988f46ffcaSHong Zhang   PetscFunctionReturn(0);
13998f46ffcaSHong Zhang }
14008f46ffcaSHong Zhang 
14018f46ffcaSHong Zhang #undef __FUNCT__
14024a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1403dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1404a30f8f8cSSatish Balay {
1405a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1406dfbe8321SBarry Smith   PetscErrorCode ierr;
1407a30f8f8cSSatish Balay 
1408a30f8f8cSSatish Balay   PetscFunctionBegin;
1409a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1410a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1411a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1412a30f8f8cSSatish Balay }
1413a30f8f8cSSatish Balay 
14144a2ae208SSatish Balay #undef __FUNCT__
14154a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1416dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1417a30f8f8cSSatish Balay {
1418a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1419a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1420dfbe8321SBarry Smith   PetscErrorCode ierr;
1421a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1422a30f8f8cSSatish Balay 
1423a30f8f8cSSatish Balay   PetscFunctionBegin;
1424d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142526fbe8dcSKarl Rupp 
1426a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
142726fbe8dcSKarl Rupp 
1428a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1429a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
143026fbe8dcSKarl Rupp 
1431a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
143226fbe8dcSKarl Rupp 
1433a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1434a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1435a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1436a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1437a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1438a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1439a30f8f8cSSatish Balay     info->memory       = isend[3];
1440a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1441a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1442ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144326fbe8dcSKarl Rupp 
1444a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1445a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1446a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1447a30f8f8cSSatish Balay     info->memory       = irecv[3];
1448a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1449a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1450ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
145126fbe8dcSKarl Rupp 
1452a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1453a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1454a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1455a30f8f8cSSatish Balay     info->memory       = irecv[3];
1456a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1457f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1458a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1459a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1460a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1461a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1462a30f8f8cSSatish Balay }
1463a30f8f8cSSatish Balay 
14644a2ae208SSatish Balay #undef __FUNCT__
14654a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1466ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1467a30f8f8cSSatish Balay {
1468a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1469d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1470dfbe8321SBarry Smith   PetscErrorCode ierr;
1471a30f8f8cSSatish Balay 
1472a30f8f8cSSatish Balay   PetscFunctionBegin;
1473e98b92d7SKris Buschelman   switch (op) {
1474512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1475e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1477a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1478e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14794e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14804e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1481e98b92d7SKris Buschelman     break;
1482e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
14834e0d8c25SBarry Smith     a->roworiented = flg;
148426fbe8dcSKarl Rupp 
14854e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14864e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1487e98b92d7SKris Buschelman     break;
14884e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1489290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1490e98b92d7SKris Buschelman     break;
1491e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14924e0d8c25SBarry Smith     a->donotstash = flg;
1493e98b92d7SKris Buschelman     break;
1494e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
14954e0d8c25SBarry Smith     a->ht_flag = flg;
1496e98b92d7SKris Buschelman     break;
14979a4540c5SBarry Smith   case MAT_HERMITIAN:
1498e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1499eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
150026fbe8dcSKarl Rupp 
1501547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1502eeffb40dSHong Zhang     break;
1503ffa07934SHong Zhang   case MAT_SPD:
1504ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1505ffa07934SHong Zhang     A->spd     = flg;
1506ffa07934SHong Zhang     if (flg) {
1507ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1508ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1509ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1510ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1511ffa07934SHong Zhang     }
1512ffa07934SHong Zhang     break;
151377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1514eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1515eeffb40dSHong Zhang     break;
151677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1517eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1518eeffb40dSHong Zhang     break;
15199a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1520e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1521290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
152277e54ba9SKris Buschelman     break;
1523d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15244e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1525d0d4cfc2SHong Zhang     break;
1526d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15274e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1528d0d4cfc2SHong Zhang     break;
1529d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15304e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1531d0d4cfc2SHong Zhang     break;
1532e98b92d7SKris Buschelman   default:
1533e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1534a30f8f8cSSatish Balay   }
1535a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1536a30f8f8cSSatish Balay }
1537a30f8f8cSSatish Balay 
15384a2ae208SSatish Balay #undef __FUNCT__
15398115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1540fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1541a30f8f8cSSatish Balay {
1542dfbe8321SBarry Smith   PetscErrorCode ierr;
15436e111a19SKarl Rupp 
1544a30f8f8cSSatish Balay   PetscFunctionBegin;
1545815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1546999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1547fc4dec0aSBarry Smith   }
15488115998fSBarry Smith   PetscFunctionReturn(0);
1549a30f8f8cSSatish Balay }
1550a30f8f8cSSatish Balay 
15514a2ae208SSatish Balay #undef __FUNCT__
15524a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1553dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1554a30f8f8cSSatish Balay {
1555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1556a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1557dfbe8321SBarry Smith   PetscErrorCode ierr;
15585e90f9d9SHong Zhang   PetscInt       nv,m,n;
1559ace3abfcSBarry Smith   PetscBool      flg;
1560a30f8f8cSSatish Balay 
1561a30f8f8cSSatish Balay   PetscFunctionBegin;
1562a30f8f8cSSatish Balay   if (ll != rr) {
1563b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1564e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1565a30f8f8cSSatish Balay   }
1566b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1567b3bf805bSHong Zhang 
15685e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1569e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1570b3bf805bSHong Zhang 
15715e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1572e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15735e90f9d9SHong Zhang 
1574ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15755e90f9d9SHong Zhang 
15765e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
15770298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
15785e90f9d9SHong Zhang 
15795e90f9d9SHong Zhang   /* scale the diagonal part */
1580a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1581a30f8f8cSSatish Balay 
15825e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1583ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15840298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1585a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1586a30f8f8cSSatish Balay }
1587a30f8f8cSSatish Balay 
15884a2ae208SSatish Balay #undef __FUNCT__
15894a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1590dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1591a30f8f8cSSatish Balay {
1592f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1593dfbe8321SBarry Smith   PetscErrorCode ierr;
1594a30f8f8cSSatish Balay 
1595a30f8f8cSSatish Balay   PetscFunctionBegin;
1596a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1597a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1598a30f8f8cSSatish Balay }
1599a30f8f8cSSatish Balay 
16006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1601a30f8f8cSSatish Balay 
16024a2ae208SSatish Balay #undef __FUNCT__
16034a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1604ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1605a30f8f8cSSatish Balay {
1606a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1607a30f8f8cSSatish Balay   Mat            a,b,c,d;
1608ace3abfcSBarry Smith   PetscBool      flg;
1609dfbe8321SBarry Smith   PetscErrorCode ierr;
1610a30f8f8cSSatish Balay 
1611a30f8f8cSSatish Balay   PetscFunctionBegin;
1612a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1613a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1614a30f8f8cSSatish Balay 
1615a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1616abc0a331SBarry Smith   if (flg) {
1617a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1618a30f8f8cSSatish Balay   }
1619ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1620a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1621a30f8f8cSSatish Balay }
1622a30f8f8cSSatish Balay 
16234a2ae208SSatish Balay #undef __FUNCT__
16243c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
16253c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16263c896bc6SHong Zhang {
16273c896bc6SHong Zhang   PetscErrorCode ierr;
16283c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
16293c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
16303c896bc6SHong Zhang 
16313c896bc6SHong Zhang   PetscFunctionBegin;
16323c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16333c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1634d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16353c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1636d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16373c896bc6SHong Zhang   } else {
16383c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16393c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16403c896bc6SHong Zhang   }
16413c896bc6SHong Zhang   PetscFunctionReturn(0);
16423c896bc6SHong Zhang }
16433c896bc6SHong Zhang 
16443c896bc6SHong Zhang #undef __FUNCT__
16454994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
16464994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1647273d9f13SBarry Smith {
1648dfbe8321SBarry Smith   PetscErrorCode ierr;
1649273d9f13SBarry Smith 
1650273d9f13SBarry Smith   PetscFunctionBegin;
1651535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1652273d9f13SBarry Smith   PetscFunctionReturn(0);
1653273d9f13SBarry Smith }
1654a5e6ed63SBarry Smith 
16554fe895cdSHong Zhang #undef __FUNCT__
16564fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
16574fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16584fe895cdSHong Zhang {
16594fe895cdSHong Zhang   PetscErrorCode ierr;
16604fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16614fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16624fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16634fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16644fe895cdSHong Zhang 
16654fe895cdSHong Zhang   PetscFunctionBegin;
16664fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16674fe895cdSHong Zhang     PetscScalar alpha = a;
16684fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16694fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1670c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
16718b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16724fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16734fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1674c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
16758b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1676a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1677ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1678ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1679ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1680ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
16814fe895cdSHong Zhang   } else {
16824de5dceeSHong Zhang     Mat      B;
16834de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
16844de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1685d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
16864de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
16874de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
16884de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
16894de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
16904de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
16914de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
16924de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
16934de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
16944de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
16954de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
16964de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
16974de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
16984de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
16994de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17004de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1701d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17024de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17034fe895cdSHong Zhang   }
17044fe895cdSHong Zhang   PetscFunctionReturn(0);
17054fe895cdSHong Zhang }
17064fe895cdSHong Zhang 
1707a5e6ed63SBarry Smith #undef __FUNCT__
1708a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
17091302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1710a5e6ed63SBarry Smith {
17116849ba73SBarry Smith   PetscErrorCode ierr;
17121302d50aSBarry Smith   PetscInt       i;
171368906dc2SToby Isaac   PetscBool      flg,sorted;
1714a5e6ed63SBarry Smith 
17156849ba73SBarry Smith   PetscFunctionBegin;
171668906dc2SToby Isaac   for (i = 0; i < n; i++) {
171768906dc2SToby Isaac     ierr = ISSorted(irow[i],&sorted);CHKERRQ(ierr);
171868906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Row index set %d not sorted",i);
171968906dc2SToby Isaac     ierr = ISSorted(icol[i],&sorted);CHKERRQ(ierr);
172068906dc2SToby Isaac     if (!sorted) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Column index set %d not sorted",i);
172168906dc2SToby Isaac   }
17224dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1723a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1724a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
17254dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
17264dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1727a5e6ed63SBarry Smith     }
17284dcd73b1SHong Zhang   }
1729a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1730a5e6ed63SBarry Smith }
1731a5e6ed63SBarry Smith 
17327d68702bSBarry Smith #undef __FUNCT__
17337d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ"
17347d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17357d68702bSBarry Smith {
17367d68702bSBarry Smith   PetscErrorCode ierr;
17377d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17387d68702bSBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data,*bij = (Mat_SeqSBAIJ*)maij->B->data;
17397d68702bSBarry Smith 
17407d68702bSBarry Smith   PetscFunctionBegin;
17417d68702bSBarry Smith   if (!aij->nz && !bij->nz) {
17427d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17437d68702bSBarry Smith   }
17447d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17457d68702bSBarry Smith   PetscFunctionReturn(0);
17467d68702bSBarry Smith }
17477d68702bSBarry Smith 
1748a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17493964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1750a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1751a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1752a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
175397304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1754431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1755431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1756a30f8f8cSSatish Balay                                        0,
1757a30f8f8cSSatish Balay                                        0,
1758a30f8f8cSSatish Balay                                        0,
175997304618SKris Buschelman                                /* 10*/ 0,
1760a30f8f8cSSatish Balay                                        0,
1761a30f8f8cSSatish Balay                                        0,
176241f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1763a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
176497304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1765a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1766a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1767a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1768a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
176997304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1770a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1771a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1772a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1773d519adbfSMatthew Knepley                                /* 24*/ 0,
1774a30f8f8cSSatish Balay                                        0,
1775a30f8f8cSSatish Balay                                        0,
1776a30f8f8cSSatish Balay                                        0,
1777a30f8f8cSSatish Balay                                        0,
17784994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1779b5df2d14SHong Zhang                                        0,
1780a30f8f8cSSatish Balay                                        0,
1781a30f8f8cSSatish Balay                                        0,
1782a30f8f8cSSatish Balay                                        0,
1783d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1784a30f8f8cSSatish Balay                                        0,
1785a30f8f8cSSatish Balay                                        0,
1786a30f8f8cSSatish Balay                                        0,
1787a30f8f8cSSatish Balay                                        0,
1788d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1789a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1790d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1791a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
17923c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1793d519adbfSMatthew Knepley                                /* 44*/ 0,
1794a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
17957d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1796a30f8f8cSSatish Balay                                        0,
1797a30f8f8cSSatish Balay                                        0,
1798f73d5cc4SBarry Smith                                /* 49*/ 0,
1799a30f8f8cSSatish Balay                                        0,
1800a30f8f8cSSatish Balay                                        0,
1801a30f8f8cSSatish Balay                                        0,
1802a30f8f8cSSatish Balay                                        0,
1803d519adbfSMatthew Knepley                                /* 54*/ 0,
1804a30f8f8cSSatish Balay                                        0,
1805a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1806a30f8f8cSSatish Balay                                        0,
1807a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18088f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1809a30f8f8cSSatish Balay                                        0,
1810a30f8f8cSSatish Balay                                        0,
1811357abbc8SBarry Smith                                        0,
181224d5174aSHong Zhang                                        0,
1813d519adbfSMatthew Knepley                                /* 64*/ 0,
181424d5174aSHong Zhang                                        0,
181524d5174aSHong Zhang                                        0,
181624d5174aSHong Zhang                                        0,
181724d5174aSHong Zhang                                        0,
1818d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
181924d5174aSHong Zhang                                        0,
182097304618SKris Buschelman                                        0,
182197304618SKris Buschelman                                        0,
182297304618SKris Buschelman                                        0,
1823d519adbfSMatthew Knepley                                /* 74*/ 0,
182497304618SKris Buschelman                                        0,
182597304618SKris Buschelman                                        0,
182697304618SKris Buschelman                                        0,
182797304618SKris Buschelman                                        0,
1828d519adbfSMatthew Knepley                                /* 79*/ 0,
182997304618SKris Buschelman                                        0,
183097304618SKris Buschelman                                        0,
183197304618SKris Buschelman                                        0,
18325bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1833d519adbfSMatthew Knepley                                /* 84*/ 0,
1834865e5f61SKris Buschelman                                        0,
1835865e5f61SKris Buschelman                                        0,
1836865e5f61SKris Buschelman                                        0,
1837865e5f61SKris Buschelman                                        0,
1838d519adbfSMatthew Knepley                                /* 89*/ 0,
1839865e5f61SKris Buschelman                                        0,
1840865e5f61SKris Buschelman                                        0,
1841865e5f61SKris Buschelman                                        0,
1842865e5f61SKris Buschelman                                        0,
1843d519adbfSMatthew Knepley                                /* 94*/ 0,
1844865e5f61SKris Buschelman                                        0,
1845865e5f61SKris Buschelman                                        0,
184699cafbc1SBarry Smith                                        0,
184799cafbc1SBarry Smith                                        0,
1848d519adbfSMatthew Knepley                                /* 99*/ 0,
184999cafbc1SBarry Smith                                        0,
185099cafbc1SBarry Smith                                        0,
185199cafbc1SBarry Smith                                        0,
185299cafbc1SBarry Smith                                        0,
1853d519adbfSMatthew Knepley                                /*104*/ 0,
185499cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1855d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1856d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
185795936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
185895936485SShri Abhyankar                                /*109*/ 0,
185995936485SShri Abhyankar                                        0,
186095936485SShri Abhyankar                                        0,
186195936485SShri Abhyankar                                        0,
186295936485SShri Abhyankar                                        0,
186395936485SShri Abhyankar                                /*114*/ 0,
186495936485SShri Abhyankar                                        0,
186595936485SShri Abhyankar                                        0,
186695936485SShri Abhyankar                                        0,
186795936485SShri Abhyankar                                        0,
186895936485SShri Abhyankar                                /*119*/ 0,
186995936485SShri Abhyankar                                        0,
187095936485SShri Abhyankar                                        0,
18713964eb88SJed Brown                                        0,
18723964eb88SJed Brown                                        0,
18733964eb88SJed Brown                                /*124*/ 0,
18743964eb88SJed Brown                                        0,
18753964eb88SJed Brown                                        0,
18763964eb88SJed Brown                                        0,
18773964eb88SJed Brown                                        0,
18783964eb88SJed Brown                                /*129*/ 0,
18793964eb88SJed Brown                                        0,
18803964eb88SJed Brown                                        0,
18813964eb88SJed Brown                                        0,
18823964eb88SJed Brown                                        0,
18833964eb88SJed Brown                                /*134*/ 0,
18843964eb88SJed Brown                                        0,
18853964eb88SJed Brown                                        0,
18863964eb88SJed Brown                                        0,
18873964eb88SJed Brown                                        0,
18883964eb88SJed Brown                                /*139*/ 0,
1889f9426fe0SMark Adams                                        0,
189059f5e6ceSHong Zhang                                        0,
189159f5e6ceSHong Zhang                                        0,
189259f5e6ceSHong Zhang                                        0,
189359f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
189499cafbc1SBarry Smith };
1895a30f8f8cSSatish Balay 
18964a2ae208SSatish Balay #undef __FUNCT__
18974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
189811bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1899a30f8f8cSSatish Balay {
1900a30f8f8cSSatish Balay   PetscFunctionBegin;
1901a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1902a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1903a30f8f8cSSatish Balay }
1904a30f8f8cSSatish Balay 
19054a2ae208SSatish Balay #undef __FUNCT__
1906a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1907b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1908a23d5eceSKris Buschelman {
1909a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1910dfbe8321SBarry Smith   PetscErrorCode ierr;
1911535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1912a23d5eceSKris Buschelman 
1913a23d5eceSKris Buschelman   PetscFunctionBegin;
191433d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
191526283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
191626283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1917e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1918899cda47SBarry Smith 
1919a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1920d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1921d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1922c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1923a23d5eceSKris Buschelman 
1924d0f46423SBarry Smith   B->rmap->bs = bs;
1925a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1926a23d5eceSKris Buschelman   b->mbs      = mbs;
1927a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1928de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1929de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1930a23d5eceSKris Buschelman 
1931a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1932d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1933a23d5eceSKris Buschelman   }
1934d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1935d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1936a23d5eceSKris Buschelman 
1937d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1938d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1939a23d5eceSKris Buschelman 
1940526dfc15SBarry Smith   if (!B->preallocated) {
1941f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1942d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
19439c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
19443bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1945f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1946d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
19474aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
19483bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1949ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1950526dfc15SBarry Smith   }
1951a23d5eceSKris Buschelman 
1952526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1953526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
195426fbe8dcSKarl Rupp 
1955526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1956a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1957a23d5eceSKris Buschelman }
1958a23d5eceSKris Buschelman 
1959dfb205c3SBarry Smith #undef __FUNCT__
1960dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1961dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1962dfb205c3SBarry Smith {
1963dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1964dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1965dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1966dfb205c3SBarry Smith   PetscScalar    *values=0;
1967dfb205c3SBarry Smith   PetscErrorCode ierr;
1968dfb205c3SBarry Smith 
1969dfb205c3SBarry Smith   PetscFunctionBegin;
1970ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1971dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1972dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1973dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1974dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1975e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1976dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1977dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1978dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1979dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1980dfb205c3SBarry Smith 
1981dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1982dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1983dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1984dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1985dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1986dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1987dfb205c3SBarry Smith     JJ     = jj + ii[i];
1988dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1989dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1990dfb205c3SBarry Smith       JJ++;
1991dfb205c3SBarry Smith     }
1992dfb205c3SBarry Smith     d = 0;
1993dfb205c3SBarry Smith     for (; j<nz; j++) {
1994dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1995dfb205c3SBarry Smith       d++;
1996dfb205c3SBarry Smith     }
1997dfb205c3SBarry Smith     d_nnz[i] = d;
1998dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1999dfb205c3SBarry Smith   }
2000dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2001dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2002dfb205c3SBarry Smith 
2003dfb205c3SBarry Smith   values = (PetscScalar*)V;
2004dfb205c3SBarry Smith   if (!values) {
2005785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2006dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2007dfb205c3SBarry Smith   }
2008dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2009dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2010dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2011dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2012dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2013dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2014dfb205c3SBarry Smith   }
2015dfb205c3SBarry Smith 
2016dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2017dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2018dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20197827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2020dfb205c3SBarry Smith   PetscFunctionReturn(0);
2021dfb205c3SBarry Smith }
2022dfb205c3SBarry Smith 
20230bad9183SKris Buschelman /*MC
2024fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2025828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2026828413b8SBarry Smith    the matrix is stored.
2027828413b8SBarry Smith 
2028828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2029828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
20300bad9183SKris Buschelman 
20310bad9183SKris Buschelman    Options Database Keys:
20320bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20330bad9183SKris Buschelman 
20340bad9183SKris Buschelman   Level: beginner
20350bad9183SKris Buschelman 
20360bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
20370bad9183SKris Buschelman M*/
20380bad9183SKris Buschelman 
20398cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2040aa5a9175SDahai Guo 
2041a23d5eceSKris Buschelman #undef __FUNCT__
20424a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
20438cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2044b5df2d14SHong Zhang {
2045b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2046dfbe8321SBarry Smith   PetscErrorCode ierr;
204794ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2048b5df2d14SHong Zhang 
2049b5df2d14SHong Zhang   PetscFunctionBegin;
2050b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2051b0a32e0cSBarry Smith   B->data = (void*)b;
2052b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2053b5df2d14SHong Zhang 
2054b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2055b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2056b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2057b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
205826fbe8dcSKarl Rupp 
2059ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2060ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2061b5df2d14SHong Zhang 
2062b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2063854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2064b5df2d14SHong Zhang 
2065b5df2d14SHong Zhang   /* build cache for off array entries formed */
2066ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
206726fbe8dcSKarl Rupp 
2068b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
20690298fd71SBarry Smith   b->colmap      = NULL;
20700298fd71SBarry Smith   b->garray      = NULL;
2071b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2072b5df2d14SHong Zhang 
2073b5df2d14SHong Zhang   /* stuff used in block assembly */
2074b5df2d14SHong Zhang   b->barray = 0;
2075b5df2d14SHong Zhang 
2076b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2077b5df2d14SHong Zhang   b->lvec    = 0;
2078b5df2d14SHong Zhang   b->Mvctx   = 0;
207940781036SHong Zhang   b->slvec0  = 0;
208040781036SHong Zhang   b->slvec0b = 0;
208140781036SHong Zhang   b->slvec1  = 0;
208240781036SHong Zhang   b->slvec1a = 0;
208340781036SHong Zhang   b->slvec1b = 0;
208440781036SHong Zhang   b->sMvctx  = 0;
2085b5df2d14SHong Zhang 
2086b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2087b5df2d14SHong Zhang   b->rowindices   = 0;
2088b5df2d14SHong Zhang   b->rowvalues    = 0;
2089b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2090b5df2d14SHong Zhang 
2091b5df2d14SHong Zhang   /* hash table stuff */
2092b5df2d14SHong Zhang   b->ht           = 0;
2093b5df2d14SHong Zhang   b->hd           = 0;
2094b5df2d14SHong Zhang   b->ht_size      = 0;
2095b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2096b5df2d14SHong Zhang   b->ht_fact      = 0;
2097b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2098b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2099b5df2d14SHong Zhang 
21007a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
21017a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21027a868f3eSHong Zhang 
210359ffdab8SBarry Smith   b->in_loc = 0;
210459ffdab8SBarry Smith   b->v_loc  = 0;
210559ffdab8SBarry Smith   b->n_loc  = 0;
210694ae4db5SBarry Smith 
2107bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2108bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2109bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
2110bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2111bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
2112bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
21136214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21146214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21156214f412SHong Zhang #endif
2116aa5a9175SDahai Guo 
211723ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
211823ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
211923ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
212023ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
212126fbe8dcSKarl Rupp 
212217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
212394ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
212494ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
212594ae4db5SBarry Smith   if (flg) {
212694ae4db5SBarry Smith     PetscReal fact = 1.39;
212794ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
212894ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
212994ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
213094ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
213194ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
213294ae4db5SBarry Smith   }
213394ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2134b5df2d14SHong Zhang   PetscFunctionReturn(0);
2135b5df2d14SHong Zhang }
2136b5df2d14SHong Zhang 
2137209238afSKris Buschelman /*MC
2138002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2139209238afSKris Buschelman 
2140209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2141209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2142209238afSKris Buschelman 
2143209238afSKris Buschelman    Options Database Keys:
2144209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2145209238afSKris Buschelman 
2146209238afSKris Buschelman   Level: beginner
2147209238afSKris Buschelman 
2148209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2149209238afSKris Buschelman M*/
2150209238afSKris Buschelman 
21514a2ae208SSatish Balay #undef __FUNCT__
21524a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
2153b5df2d14SHong Zhang /*@C
2154b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2155b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2156b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2157b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2158b5df2d14SHong Zhang 
2159b5df2d14SHong Zhang    Collective on Mat
2160b5df2d14SHong Zhang 
2161b5df2d14SHong Zhang    Input Parameters:
21621c4f3114SJed Brown +  B - the matrix
2163bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2164bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2165b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2166b5df2d14SHong Zhang            submatrix  (same for all local rows)
2167b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
21686d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
21690298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
217095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2171b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2172b5df2d14SHong Zhang            submatrix (same for all local rows).
2173b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2174c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
21750298fd71SBarry Smith            (possibly different for each block row) or NULL.
2176b5df2d14SHong Zhang 
2177b5df2d14SHong Zhang 
2178b5df2d14SHong Zhang    Options Database Keys:
2179b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2180b5df2d14SHong Zhang                      block calculations (much slower)
2181b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2182b5df2d14SHong Zhang 
2183b5df2d14SHong Zhang    Notes:
2184b5df2d14SHong Zhang 
2185b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2186b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2187b5df2d14SHong Zhang 
218849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
218949a6f317SBarry Smith 
2190b5df2d14SHong Zhang    Storage Information:
2191b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2192b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2193b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2194b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2195b5df2d14SHong Zhang 
2196b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2197b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
21980298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2199b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2200b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2201b5df2d14SHong Zhang 
2202aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2203aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2204aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2205aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2206aa95bbe8SBarry Smith 
2207b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2208b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2209b5df2d14SHong Zhang 
2210b5df2d14SHong Zhang .vb
2211b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2212a4b1a0f6SJed Brown           --------------------------
2213c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2214c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2215c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2216a4b1a0f6SJed Brown           --------------------------
2217b5df2d14SHong Zhang .ve
2218b5df2d14SHong Zhang 
2219b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2220b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22216d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22226d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2223b5df2d14SHong Zhang 
22246d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22256d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2226c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2227c2fc9fa9SBarry Smith 
2228b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2229b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2230b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2231b5df2d14SHong Zhang    matrices.
2232b5df2d14SHong Zhang 
2233b5df2d14SHong Zhang    Level: intermediate
2234b5df2d14SHong Zhang 
2235b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2236b5df2d14SHong Zhang 
2237ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2238b5df2d14SHong Zhang @*/
22397087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2240b5df2d14SHong Zhang {
22414ac538c5SBarry Smith   PetscErrorCode ierr;
2242b5df2d14SHong Zhang 
2243b5df2d14SHong Zhang   PetscFunctionBegin;
22446ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22456ba663aaSJed Brown   PetscValidType(B,1);
22466ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
22474ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2248b5df2d14SHong Zhang   PetscFunctionReturn(0);
2249b5df2d14SHong Zhang }
2250b5df2d14SHong Zhang 
22514a2ae208SSatish Balay #undef __FUNCT__
225269b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2253a30f8f8cSSatish Balay /*@C
225469b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2255a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2256a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2257a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2258a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2259a30f8f8cSSatish Balay 
2260a30f8f8cSSatish Balay    Collective on MPI_Comm
2261a30f8f8cSSatish Balay 
2262a30f8f8cSSatish Balay    Input Parameters:
2263a30f8f8cSSatish Balay +  comm - MPI communicator
2264bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2265bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2266a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2267a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2268a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2269a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2270a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2271a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2272a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2273a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2274a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2275a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2276a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
22776d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
22780298fd71SBarry Smith            (possibly different for each block block row) or NULL.
227995742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
228095742e49SBarry Smith            set its value even if it is zero.
2281a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2282a30f8f8cSSatish Balay            submatrix (same for all local rows).
2283a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2284a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
22850298fd71SBarry Smith            each block row) or NULL.
2286a30f8f8cSSatish Balay 
2287a30f8f8cSSatish Balay    Output Parameter:
2288a30f8f8cSSatish Balay .  A - the matrix
2289a30f8f8cSSatish Balay 
2290a30f8f8cSSatish Balay    Options Database Keys:
2291a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2292a30f8f8cSSatish Balay                      block calculations (much slower)
2293a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2294a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2295a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2296a30f8f8cSSatish Balay 
2297175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2298ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2299175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2300175b88e8SBarry Smith 
2301a30f8f8cSSatish Balay    Notes:
2302d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23036d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2304d1be2dadSMatthew Knepley 
2305a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2306a30f8f8cSSatish Balay    (possibly both).
2307a30f8f8cSSatish Balay 
2308a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2309a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2310a30f8f8cSSatish Balay 
231149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
231249a6f317SBarry Smith 
2313a30f8f8cSSatish Balay    Storage Information:
2314a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2315a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2316a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2317a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2318a30f8f8cSSatish Balay 
2319a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2320a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23210298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2322a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2323a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2324a30f8f8cSSatish Balay 
2325a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2326a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay .vb
2329a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2330a4b1a0f6SJed Brown           --------------------------
2331c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2332c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2333c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2334a4b1a0f6SJed Brown           --------------------------
2335a30f8f8cSSatish Balay .ve
2336a30f8f8cSSatish Balay 
2337a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2338a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
23396d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23406d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2341a30f8f8cSSatish Balay 
23426d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23436d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2344a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2345a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2346a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2347a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2348a30f8f8cSSatish Balay    matrices.
2349a30f8f8cSSatish Balay 
2350a30f8f8cSSatish Balay    Level: intermediate
2351a30f8f8cSSatish Balay 
2352a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2353a30f8f8cSSatish Balay 
235469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2355a30f8f8cSSatish Balay @*/
2356a30f8f8cSSatish Balay 
235769b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2358a30f8f8cSSatish Balay {
23596849ba73SBarry Smith   PetscErrorCode ierr;
23601302d50aSBarry Smith   PetscMPIInt    size;
2361a30f8f8cSSatish Balay 
2362a30f8f8cSSatish Balay   PetscFunctionBegin;
2363f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2364f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2365273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2366273d9f13SBarry Smith   if (size > 1) {
2367b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2368b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2369273d9f13SBarry Smith   } else {
2370273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2371273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2372273d9f13SBarry Smith   }
2373a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2374a30f8f8cSSatish Balay }
2375a30f8f8cSSatish Balay 
2376a30f8f8cSSatish Balay 
23774a2ae208SSatish Balay #undef __FUNCT__
23784a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
23796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2380a30f8f8cSSatish Balay {
2381a30f8f8cSSatish Balay   Mat            mat;
2382a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2383dfbe8321SBarry Smith   PetscErrorCode ierr;
2384d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2385387bc808SHong Zhang   PetscScalar    *array;
2386a30f8f8cSSatish Balay 
2387a30f8f8cSSatish Balay   PetscFunctionBegin;
2388a30f8f8cSSatish Balay   *newmat = 0;
238926fbe8dcSKarl Rupp 
2390ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2391d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
23927adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
23931d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
23941e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
23951e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2396e1b6402fSHong Zhang 
2397d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2398273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
239982327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24007fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24017fff6886SHong Zhang 
2402b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2403a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2404a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2405a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2406a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2407a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2408a30f8f8cSSatish Balay 
2409899cda47SBarry Smith 
2410a30f8f8cSSatish Balay   a->size         = oldmat->size;
2411a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2412a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2413a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2414a30f8f8cSSatish Balay   a->rowindices   = 0;
2415a30f8f8cSSatish Balay   a->rowvalues    = 0;
2416a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2417a30f8f8cSSatish Balay   a->barray       = 0;
2418899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2419899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2420899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2421899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2422a30f8f8cSSatish Balay 
2423a30f8f8cSSatish Balay   /* hash table stuff */
2424a30f8f8cSSatish Balay   a->ht           = 0;
2425a30f8f8cSSatish Balay   a->hd           = 0;
2426a30f8f8cSSatish Balay   a->ht_size      = 0;
2427a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2428a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2429a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2430a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2431a30f8f8cSSatish Balay 
2432899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2433a30f8f8cSSatish Balay   if (oldmat->colmap) {
2434a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2435a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2436a30f8f8cSSatish Balay #else
2437854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
24383bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
24391302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2440a30f8f8cSSatish Balay #endif
2441a30f8f8cSSatish Balay   } else a->colmap = 0;
2442387bc808SHong Zhang 
2443a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2444785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
24453bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
24461302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2447a30f8f8cSSatish Balay   } else a->garray = 0;
2448a30f8f8cSSatish Balay 
2449ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2450a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
24513bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2452a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
24533bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
245482327fa8SHong Zhang 
245582327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
24563bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
245782327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
24583bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2459387bc808SHong Zhang 
2460387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
24611ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2462778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2463778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
24641ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
24651ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2466778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
24671ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
24683bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
24693bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
24703bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
24713bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
24723bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2473387bc808SHong Zhang 
2474387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2475387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2476387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
24773bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
247882327fa8SHong Zhang 
2479a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
24803bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2481a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
24823bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2483140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2484a30f8f8cSSatish Balay   *newmat = mat;
2485a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2486a30f8f8cSSatish Balay }
2487a30f8f8cSSatish Balay 
24884a2ae208SSatish Balay #undef __FUNCT__
24895bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2490112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
249195936485SShri Abhyankar {
249295936485SShri Abhyankar   PetscErrorCode ierr;
249395936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
249495936485SShri Abhyankar   PetscScalar    *vals,*buf;
2495ce94432eSBarry Smith   MPI_Comm       comm;
249695936485SShri Abhyankar   MPI_Status     status;
2497adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2498adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
249995936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
25003059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
250195936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2502461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
250395936485SShri Abhyankar   int            fd;
250495936485SShri Abhyankar 
250595936485SShri Abhyankar   PetscFunctionBegin;
2506c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2507c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2508ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
25090298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
25100298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
251195936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25123059b6faSBarry Smith   if (bs < 0) bs = 1;
251395936485SShri Abhyankar 
251495936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
251595936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
251695936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
25175872f025SBarry Smith   if (!rank) {
251895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
251995936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
252095936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
252195936485SShri Abhyankar   }
252295936485SShri Abhyankar 
252395936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
252426fbe8dcSKarl Rupp   M    = header[1];
252526fbe8dcSKarl Rupp   N    = header[2];
252695936485SShri Abhyankar 
252795936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2528461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2529461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
253095936485SShri Abhyankar 
253195936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
253295936485SShri Abhyankar 
253395936485SShri Abhyankar   /*
253495936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
253595936485SShri Abhyankar      divisible by the blocksize
253695936485SShri Abhyankar   */
253795936485SShri Abhyankar   Mbs        = M/bs;
253895936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
253995936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
254095936485SShri Abhyankar   else                  Mbs++;
254195936485SShri Abhyankar   if (extra_rows &&!rank) {
254295936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
254395936485SShri Abhyankar   }
254495936485SShri Abhyankar 
254595936485SShri Abhyankar   /* determine ownership of all rows */
254695936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
254795936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
254895936485SShri Abhyankar     m   = mbs*bs;
254995936485SShri Abhyankar   } else { /* User Set */
255095936485SShri Abhyankar     m   = newmat->rmap->n;
255195936485SShri Abhyankar     mbs = m/bs;
255295936485SShri Abhyankar   }
2553dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
25544dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
255595936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
255695936485SShri Abhyankar   rowners[0] = 0;
255795936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
255895936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
255995936485SShri Abhyankar   rstart = rowners[rank];
256095936485SShri Abhyankar   rend   = rowners[rank+1];
256195936485SShri Abhyankar 
256295936485SShri Abhyankar   /* distribute row lengths to all processors */
2563785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
256495936485SShri Abhyankar   if (!rank) {
2565854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
256695936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
256795936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2568785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
256995936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
257095936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
257195936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
257295936485SShri Abhyankar   } else {
257395936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
257495936485SShri Abhyankar   }
257595936485SShri Abhyankar 
257695936485SShri Abhyankar   if (!rank) {   /* procs[0] */
257795936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2578785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
257995936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
258095936485SShri Abhyankar     for (i=0; i<size; i++) {
258195936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
258295936485SShri Abhyankar         procsnz[i] += rowlengths[j];
258395936485SShri Abhyankar       }
258495936485SShri Abhyankar     }
258595936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
258695936485SShri Abhyankar 
258795936485SShri Abhyankar     /* determine max buffer needed and allocate it */
258895936485SShri Abhyankar     maxnz = 0;
258995936485SShri Abhyankar     for (i=0; i<size; i++) {
259095936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
259195936485SShri Abhyankar     }
2592785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
259395936485SShri Abhyankar 
259495936485SShri Abhyankar     /* read in my part of the matrix column indices  */
259595936485SShri Abhyankar     nz     = procsnz[0];
2596785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
259795936485SShri Abhyankar     mycols = ibuf;
259895936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
259995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
260026fbe8dcSKarl Rupp     if (size == 1) {
260126fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
260226fbe8dcSKarl Rupp     }
260395936485SShri Abhyankar 
260495936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
260595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
260695936485SShri Abhyankar       nz   = procsnz[i];
260795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
260895936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
260995936485SShri Abhyankar     }
261095936485SShri Abhyankar     /* read in the stuff for the last proc */
261195936485SShri Abhyankar     if (size != 1) {
261295936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
261395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
261495936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
261595936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
261695936485SShri Abhyankar     }
261795936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
261895936485SShri Abhyankar   } else {  /* procs[i], i>0 */
261995936485SShri Abhyankar     /* determine buffer space needed for message */
262095936485SShri Abhyankar     nz = 0;
262126fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2622785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
262395936485SShri Abhyankar     mycols = ibuf;
262495936485SShri Abhyankar     /* receive message of column indices*/
262595936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
262695936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
262795936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
262895936485SShri Abhyankar   }
262995936485SShri Abhyankar 
263095936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2631dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2632dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
263395936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
263495936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
263595936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
263695936485SShri Abhyankar   rowcount = 0;
263795936485SShri Abhyankar   nzcount  = 0;
263895936485SShri Abhyankar   for (i=0; i<mbs; i++) {
263995936485SShri Abhyankar     dcount  = 0;
264095936485SShri Abhyankar     odcount = 0;
264195936485SShri Abhyankar     for (j=0; j<bs; j++) {
264295936485SShri Abhyankar       kmax = locrowlens[rowcount];
264395936485SShri Abhyankar       for (k=0; k<kmax; k++) {
264495936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
264595936485SShri Abhyankar         if (!mask[tmp]) {
264695936485SShri Abhyankar           mask[tmp] = 1;
264795936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
264895936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
264995936485SShri Abhyankar         }
265095936485SShri Abhyankar       }
265195936485SShri Abhyankar       rowcount++;
265295936485SShri Abhyankar     }
265395936485SShri Abhyankar 
265495936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
265595936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
265695936485SShri Abhyankar 
265795936485SShri Abhyankar     /* zero out the mask elements we set */
265895936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
265995936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
266095936485SShri Abhyankar   }
266195936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
266295936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
26636816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
266495936485SShri Abhyankar 
266595936485SShri Abhyankar   if (!rank) {
2666785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
266795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
266895936485SShri Abhyankar     nz     = procsnz[0];
266995936485SShri Abhyankar     vals   = buf;
267095936485SShri Abhyankar     mycols = ibuf;
267195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
267295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
267326fbe8dcSKarl Rupp     if (size == 1) {
267426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
267526fbe8dcSKarl Rupp     }
267695936485SShri Abhyankar 
267795936485SShri Abhyankar     /* insert into matrix */
267895936485SShri Abhyankar     jj = rstart*bs;
267995936485SShri Abhyankar     for (i=0; i<m; i++) {
268095936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
268195936485SShri Abhyankar       mycols += locrowlens[i];
268295936485SShri Abhyankar       vals   += locrowlens[i];
268395936485SShri Abhyankar       jj++;
268495936485SShri Abhyankar     }
268595936485SShri Abhyankar 
268695936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
268795936485SShri Abhyankar     for (i=1; i<size-1; i++) {
268895936485SShri Abhyankar       nz   = procsnz[i];
268995936485SShri Abhyankar       vals = buf;
269095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
269195936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
269295936485SShri Abhyankar     }
269395936485SShri Abhyankar     /* the last proc */
269495936485SShri Abhyankar     if (size != 1) {
269595936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
269695936485SShri Abhyankar       vals = buf;
269795936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
269895936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
269995936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
270095936485SShri Abhyankar     }
270195936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
270295936485SShri Abhyankar 
270395936485SShri Abhyankar   } else {
270495936485SShri Abhyankar     /* receive numeric values */
2705785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
270695936485SShri Abhyankar 
270795936485SShri Abhyankar     /* receive message of values*/
270895936485SShri Abhyankar     vals   = buf;
270995936485SShri Abhyankar     mycols = ibuf;
271095936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
271195936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
271295936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
271395936485SShri Abhyankar 
271495936485SShri Abhyankar     /* insert into matrix */
271595936485SShri Abhyankar     jj = rstart*bs;
271695936485SShri Abhyankar     for (i=0; i<m; i++) {
271795936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
271895936485SShri Abhyankar       mycols += locrowlens[i];
271995936485SShri Abhyankar       vals   += locrowlens[i];
272095936485SShri Abhyankar       jj++;
272195936485SShri Abhyankar     }
272295936485SShri Abhyankar   }
272395936485SShri Abhyankar 
272495936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
272595936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
272695936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
272795936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
272895936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
272995936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
273095936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
273195936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
273295936485SShri Abhyankar   PetscFunctionReturn(0);
273395936485SShri Abhyankar }
273495936485SShri Abhyankar 
273595936485SShri Abhyankar #undef __FUNCT__
27364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2737dcf5cc72SBarry Smith /*XXXXX@
2738a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2739a30f8f8cSSatish Balay 
2740a30f8f8cSSatish Balay    Input Parameters:
2741a30f8f8cSSatish Balay .  mat  - the matrix
2742a30f8f8cSSatish Balay .  fact - factor
2743a30f8f8cSSatish Balay 
2744c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2745a30f8f8cSSatish Balay 
2746a30f8f8cSSatish Balay    Level: advanced
2747a30f8f8cSSatish Balay 
2748a30f8f8cSSatish Balay   Notes:
2749a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2750a30f8f8cSSatish Balay 
2751a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2752a30f8f8cSSatish Balay 
2753a30f8f8cSSatish Balay .seealso: MatSetOption()
2754dcf5cc72SBarry Smith @XXXXX*/
2755dcf5cc72SBarry Smith 
275624d5174aSHong Zhang 
27574a2ae208SSatish Balay #undef __FUNCT__
2758985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2759985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
276024d5174aSHong Zhang {
276124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2762f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2763ca54ac64SHong Zhang   PetscReal      atmp;
276487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2765dfbe8321SBarry Smith   PetscErrorCode ierr;
27661302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
27671302d50aSBarry Smith   PetscMPIInt    rank,size;
27681302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
276987828ca2SBarry Smith   PetscScalar    *va;
27708a1c53f2SBarry Smith   MatScalar      *ba;
2771f4c0e9e4SHong Zhang   MPI_Status     stat;
277224d5174aSHong Zhang 
277324d5174aSHong Zhang   PetscFunctionBegin;
2774e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
27750298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
27761ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2777f4c0e9e4SHong Zhang 
2778ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2779ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2780f4c0e9e4SHong Zhang 
2781d0f46423SBarry Smith   bs  = A->rmap->bs;
2782f4c0e9e4SHong Zhang   mbs = a->mbs;
2783f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2784f4c0e9e4SHong Zhang   ba  = b->a;
2785f4c0e9e4SHong Zhang   bi  = b->i;
2786f4c0e9e4SHong Zhang   bj  = b->j;
2787f4c0e9e4SHong Zhang 
2788f4c0e9e4SHong Zhang   /* find ownerships */
2789d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2790f4c0e9e4SHong Zhang 
2791f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2792785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2793ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2794f4c0e9e4SHong Zhang 
2795f4c0e9e4SHong Zhang   /* row_max for B */
2796b8475685SHong Zhang   if (rank != size-1) {
2797f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2798f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2799f4c0e9e4SHong Zhang       brow  = bs*i;
2800f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2801f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2802f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2803ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
280404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2805f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2806f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2807ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2808ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2809f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2810f4c0e9e4SHong Zhang           }
2811f4c0e9e4SHong Zhang         }
2812f4c0e9e4SHong Zhang         bj++;
2813f4c0e9e4SHong Zhang       }
2814f4c0e9e4SHong Zhang     }
2815f4c0e9e4SHong Zhang 
2816f4c0e9e4SHong Zhang     /* send values to its owners */
2817f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2818f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2819ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2820ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2821ca54ac64SHong Zhang     }
2822f4c0e9e4SHong Zhang   }
2823f4c0e9e4SHong Zhang 
2824f4c0e9e4SHong Zhang   /* receive values */
2825ca54ac64SHong Zhang   if (rank) {
2826f4c0e9e4SHong Zhang     rvalues = work;
2827ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2828f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2829ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2830f4c0e9e4SHong Zhang       /* process values */
2831f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2832ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2833f4c0e9e4SHong Zhang       }
2834f4c0e9e4SHong Zhang     }
2835ca54ac64SHong Zhang   }
2836f4c0e9e4SHong Zhang 
28371ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2838ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
283924d5174aSHong Zhang   PetscFunctionReturn(0);
284024d5174aSHong Zhang }
28412798e883SHong Zhang 
28422798e883SHong Zhang #undef __FUNCT__
284341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
284441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
28452798e883SHong Zhang {
28462798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2847dfbe8321SBarry Smith   PetscErrorCode    ierr;
2848d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
28493649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2850ffe4fb16SHong Zhang   Vec               bb1;
28513649974fSBarry Smith   const PetscScalar *b;
2852ffe4fb16SHong Zhang 
2853ffe4fb16SHong Zhang   PetscFunctionBegin;
2854e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2855e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2856ffe4fb16SHong Zhang 
2857a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
285841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2859a2b30743SBarry Smith     PetscFunctionReturn(0);
2860a2b30743SBarry Smith   }
2861a2b30743SBarry Smith 
2862ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2863ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
286441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2865ffe4fb16SHong Zhang       its--;
2866ffe4fb16SHong Zhang     }
2867ffe4fb16SHong Zhang 
2868ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2869ffe4fb16SHong Zhang     while (its--) {
2870ffe4fb16SHong Zhang 
2871ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2872ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2873ffe4fb16SHong Zhang 
2874ffe4fb16SHong Zhang       /* copy xx into slvec0a */
28751ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
28761ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2877ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28781ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2879ffe4fb16SHong Zhang 
2880efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2881ffe4fb16SHong Zhang 
2882ffe4fb16SHong Zhang       /* copy bb into slvec1a */
28831ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
28843649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2885ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
28861ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2887ffe4fb16SHong Zhang 
2888ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2889fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2890ffe4fb16SHong Zhang 
2891ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
28921ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2893a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2894ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2895ffe4fb16SHong Zhang 
2896ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2897ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2898ffe4fb16SHong Zhang 
2899ffe4fb16SHong Zhang       /* local diagonal sweep */
290041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2901ffe4fb16SHong Zhang     }
29026bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2903fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
290441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2905fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
290641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2907fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2908fa22f6d0SBarry Smith     Vec               xx1;
2909ace3abfcSBarry Smith     PetscBool         hasop;
291020f1ed55SBarry Smith     const PetscScalar *diag;
2911887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
291220f1ed55SBarry Smith     PetscInt          i,n;
2913fa22f6d0SBarry Smith 
2914fa22f6d0SBarry Smith     if (!mat->xx1) {
2915fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2916fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2917fa22f6d0SBarry Smith     }
2918fa22f6d0SBarry Smith     xx1 = mat->xx1;
2919fa22f6d0SBarry Smith     bb1 = mat->bb1;
2920fa22f6d0SBarry Smith 
292141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2922fa22f6d0SBarry Smith 
2923fa22f6d0SBarry Smith     if (!mat->diag) {
2924effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
29252a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2926fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2927fa22f6d0SBarry Smith     }
2928fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2929fa22f6d0SBarry Smith 
2930fa22f6d0SBarry Smith     if (hasop) {
2931fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2932887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
293320f1ed55SBarry Smith     } else {
293420f1ed55SBarry Smith       /*
293520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
293620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2937887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
293820f1ed55SBarry Smith       */
293920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29403649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29413649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
294220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
294320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2944887ee2caSBarry Smith       if (omega == 1.0) {
294526fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
294620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2947887ee2caSBarry Smith       } else {
294826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2949887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2950887ee2caSBarry Smith       }
295120f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
29523649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
29533649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
295420f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
295520f1ed55SBarry Smith     }
2956fa22f6d0SBarry Smith 
2957fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2958fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2959fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2960fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2961fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2962fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2963fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2964fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2965fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2966fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2967effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2968fa22f6d0SBarry Smith 
2969fa22f6d0SBarry Smith     /* local sweep */
297041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2971fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2972f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2973ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2974ffe4fb16SHong Zhang }
2975ffe4fb16SHong Zhang 
2976ffe4fb16SHong Zhang #undef __FUNCT__
297741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
297841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2979ffe4fb16SHong Zhang {
2980ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2981dfbe8321SBarry Smith   PetscErrorCode ierr;
29822798e883SHong Zhang   Vec            lvec1,bb1;
29832798e883SHong Zhang 
29842798e883SHong Zhang   PetscFunctionBegin;
2985e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2986e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
29872798e883SHong Zhang 
2988c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
29892798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
299041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
29912798e883SHong Zhang       its--;
29922798e883SHong Zhang     }
29932798e883SHong Zhang 
29942798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
29952798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
29962798e883SHong Zhang     while (its--) {
2997ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29982798e883SHong Zhang 
29992798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
30002798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3001efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
30022798e883SHong Zhang 
3003ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30042798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3005ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30062798e883SHong Zhang 
30072798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3008efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
30092798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
30102798e883SHong Zhang 
3011ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
30122798e883SHong Zhang 
3013c14dc6b6SHong Zhang       /* diagonal sweep */
301441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
30152798e883SHong Zhang     }
30166bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
30176bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
30186bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
30192798e883SHong Zhang   PetscFunctionReturn(0);
30202798e883SHong Zhang }
30212798e883SHong Zhang 
3022dfb205c3SBarry Smith #undef __FUNCT__
3023dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
3024dfb205c3SBarry Smith /*@
3025dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3026dfb205c3SBarry Smith          CSR format the local rows.
3027dfb205c3SBarry Smith 
3028dfb205c3SBarry Smith    Collective on MPI_Comm
3029dfb205c3SBarry Smith 
3030dfb205c3SBarry Smith    Input Parameters:
3031dfb205c3SBarry Smith +  comm - MPI communicator
3032dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3033dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3034dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3035dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3036dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3037dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3038dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3039dfb205c3SBarry Smith .   i - row indices
3040dfb205c3SBarry Smith .   j - column indices
3041dfb205c3SBarry Smith -   a - matrix values
3042dfb205c3SBarry Smith 
3043dfb205c3SBarry Smith    Output Parameter:
3044dfb205c3SBarry Smith .   mat - the matrix
3045dfb205c3SBarry Smith 
3046dfb205c3SBarry Smith    Level: intermediate
3047dfb205c3SBarry Smith 
3048dfb205c3SBarry Smith    Notes:
3049dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3050dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3051dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3052dfb205c3SBarry Smith 
3053dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3054dfb205c3SBarry Smith 
3055dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3056dfb205c3SBarry Smith 
3057dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
305869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3059dfb205c3SBarry Smith @*/
30607087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3061dfb205c3SBarry Smith {
3062dfb205c3SBarry Smith   PetscErrorCode ierr;
3063dfb205c3SBarry Smith 
3064dfb205c3SBarry Smith 
3065dfb205c3SBarry Smith   PetscFunctionBegin;
3066f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3067dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3068dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3069dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3070dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3071dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3072dfb205c3SBarry Smith   PetscFunctionReturn(0);
3073dfb205c3SBarry Smith }
3074dfb205c3SBarry Smith 
3075dfb205c3SBarry Smith 
3076dfb205c3SBarry Smith #undef __FUNCT__
3077dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
3078dfb205c3SBarry Smith /*@C
3079dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3080dfb205c3SBarry Smith    (the default parallel PETSc format).
3081dfb205c3SBarry Smith 
3082dfb205c3SBarry Smith    Collective on MPI_Comm
3083dfb205c3SBarry Smith 
3084dfb205c3SBarry Smith    Input Parameters:
30851c4f3114SJed Brown +  B - the matrix
3086dfb205c3SBarry Smith .  bs - the block size
3087dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3088dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3089dfb205c3SBarry Smith -  v - optional values in the matrix
3090dfb205c3SBarry Smith 
3091dfb205c3SBarry Smith    Level: developer
3092dfb205c3SBarry Smith 
3093dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3094dfb205c3SBarry Smith 
309569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3096dfb205c3SBarry Smith @*/
30977087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3098dfb205c3SBarry Smith {
30994ac538c5SBarry Smith   PetscErrorCode ierr;
3100dfb205c3SBarry Smith 
3101dfb205c3SBarry Smith   PetscFunctionBegin;
31024ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3103dfb205c3SBarry Smith   PetscFunctionReturn(0);
3104dfb205c3SBarry Smith }
3105dfb205c3SBarry Smith 
3106de4b53ebSHong Zhang #undef __FUNCT__
310710c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
310810c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
31094dcd73b1SHong Zhang {
31104dcd73b1SHong Zhang   PetscErrorCode ierr;
311110c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
311210c56fdeSHong Zhang   PetscInt       *indx;
311310c56fdeSHong Zhang   PetscScalar    *values;
3114dfb205c3SBarry Smith 
31154dcd73b1SHong Zhang   PetscFunctionBegin;
31164dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
311710c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
311810c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
311910c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
312010c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
31214dcd73b1SHong Zhang 
312210c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
312310c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
312410c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
312510c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
312610c56fdeSHong Zhang     }
312710c56fdeSHong Zhang     /* Check sum(n) = Nbs */
312810c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
312910c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
313010c56fdeSHong Zhang 
313110c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
313210c56fdeSHong Zhang     rstart -= mbs;
31334dcd73b1SHong Zhang 
31344dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
313510c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3136e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
313710c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
31384dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
31394dcd73b1SHong Zhang       nnz = nnz/bs;
31404dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
31414dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
31424dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
31434dcd73b1SHong Zhang     }
3144e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
31454dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
31464dcd73b1SHong Zhang 
31474dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
314810c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
31494dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
31504dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
31514dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
31524dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
31534dcd73b1SHong Zhang   }
31544dcd73b1SHong Zhang 
315510c56fdeSHong Zhang   /* numeric phase */
31564dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
315710c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
31584dcd73b1SHong Zhang 
3159e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
31604dcd73b1SHong Zhang   for (i=0; i<m; i++) {
31614dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31624dcd73b1SHong Zhang     Ii   = i + rstart;
316310c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
31644dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
31654dcd73b1SHong Zhang   }
3166e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
316710c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
316810c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31694dcd73b1SHong Zhang   PetscFunctionReturn(0);
31704dcd73b1SHong Zhang }
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