1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define CHUNKSIZE 10 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 57a30f8f8cSSatish Balay { \ 58a30f8f8cSSatish Balay \ 59a30f8f8cSSatish Balay brow = row/bs; \ 60a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 61a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 62a30f8f8cSSatish Balay bcol = col/bs; \ 63a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 64a30f8f8cSSatish Balay low = 0; high = nrow; \ 65a30f8f8cSSatish Balay while (high-low > 3) { \ 66a30f8f8cSSatish Balay t = (low+high)/2; \ 67a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 68a30f8f8cSSatish Balay else low = t; \ 69a30f8f8cSSatish Balay } \ 70a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 71a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 72a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 73a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 74a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 75a30f8f8cSSatish Balay else *bap = value; \ 76a30f8f8cSSatish Balay goto a_noinsert; \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 80085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 81421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 82a30f8f8cSSatish Balay N = nrow++ - 1; \ 83a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 84a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 85a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 86a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 87a30f8f8cSSatish Balay } \ 88a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 89a30f8f8cSSatish Balay rp[_i] = bcol; \ 90a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 91a30f8f8cSSatish Balay a_noinsert:; \ 92a30f8f8cSSatish Balay ailen[brow] = nrow; \ 93a30f8f8cSSatish Balay } 94e5e170daSBarry Smith 95a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 96a30f8f8cSSatish Balay { \ 97a30f8f8cSSatish Balay brow = row/bs; \ 98a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 99a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 100a30f8f8cSSatish Balay bcol = col/bs; \ 101a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 102a30f8f8cSSatish Balay low = 0; high = nrow; \ 103a30f8f8cSSatish Balay while (high-low > 3) { \ 104a30f8f8cSSatish Balay t = (low+high)/2; \ 105a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 106a30f8f8cSSatish Balay else low = t; \ 107a30f8f8cSSatish Balay } \ 108a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 109a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 110a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 111a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 112a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 113a30f8f8cSSatish Balay else *bap = value; \ 114a30f8f8cSSatish Balay goto b_noinsert; \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 118085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 119421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 120a30f8f8cSSatish Balay N = nrow++ - 1; \ 121a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 122a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 123a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay } \ 126a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 127a30f8f8cSSatish Balay rp[_i] = bcol; \ 128a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 129a30f8f8cSSatish Balay b_noinsert:; \ 130a30f8f8cSSatish Balay bilen[brow] = nrow; \ 131a30f8f8cSSatish Balay } 132a30f8f8cSSatish Balay 133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 134a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 135a30f8f8cSSatish Balay */ 1364a2ae208SSatish Balay #undef __FUNCT__ 137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 139a30f8f8cSSatish Balay { 140a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 141a30f8f8cSSatish Balay MatScalar value; 142b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 143dfbe8321SBarry Smith PetscErrorCode ierr; 1441302d50aSBarry Smith PetscInt i,j,row,col; 145d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 146d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 147d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 148a30f8f8cSSatish Balay 149a30f8f8cSSatish Balay /* Some Variables required in the macro */ 150a30f8f8cSSatish Balay Mat A = baij->A; 151a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1521302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 153a30f8f8cSSatish Balay MatScalar *aa=a->a; 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay Mat B = baij->B; 156a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1571302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 158a30f8f8cSSatish Balay MatScalar *ba=b->a; 159a30f8f8cSSatish Balay 1601302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1611302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 162a30f8f8cSSatish Balay MatScalar *ap,*bap; 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay /* for stash */ 165910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 166910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 167a30f8f8cSSatish Balay 168a30f8f8cSSatish Balay PetscFunctionBegin; 16971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 170a30f8f8cSSatish Balay if (!baij->donotstash){ 17159ffdab8SBarry Smith if (n > baij->n_loc) { 17259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith baij->n_loc = n; 17759ffdab8SBarry Smith } 17859ffdab8SBarry Smith in_loc = baij->in_loc; 17959ffdab8SBarry Smith v_loc = baij->v_loc; 180a30f8f8cSSatish Balay } 181a30f8f8cSSatish Balay 182a30f8f8cSSatish Balay for (i=0; i<m; i++) { 183a30f8f8cSSatish Balay if (im[i] < 0) continue; 1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 185d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 186a30f8f8cSSatish Balay #endif 187a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 188a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 189a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19001b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19101b2bd88SHong Zhang if (a->ignore_ltriangular){ 19201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19301b2bd88SHong Zhang } else { 1944e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19501b2bd88SHong Zhang } 19601b2bd88SHong Zhang } 197a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 198a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 199a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 200a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 201a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 202a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 203a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 204a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 206d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 207a30f8f8cSSatish Balay #endif 208a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 209a30f8f8cSSatish Balay if (mat->was_assembled) { 210a30f8f8cSSatish Balay if (!baij->colmap) { 211653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 214a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21571730473SSatish Balay col = col - 1; 216a30f8f8cSSatish Balay #else 21771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 218a30f8f8cSSatish Balay #endif 219a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 220a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 221a30f8f8cSSatish Balay col = in[j]; 222a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 223a30f8f8cSSatish Balay B = baij->B; 224a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 225a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 226a30f8f8cSSatish Balay ba=b->a; 22771730473SSatish Balay } else col += in[j]%bs; 228a30f8f8cSSatish Balay } else col = in[j]; 229a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 231a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } else { /* off processor entry */ 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 2610880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 28177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 2860880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2870880e062SHong Zhang if ((roworiented) && (n == 1)) { 288f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2890880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2910880e062SHong Zhang } else { /* Here a copy is required */ 2920880e062SHong Zhang if (roworiented) { 2930880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2940880e062SHong Zhang } else { 2950880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2960880e062SHong Zhang } 2970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2990880e062SHong Zhang *barray++ = *value++; 3000880e062SHong Zhang } 3010880e062SHong Zhang } 3020880e062SHong Zhang barray -=bs2; 3030880e062SHong Zhang } 3040880e062SHong Zhang 3050880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3060880e062SHong Zhang col = in[j] - cstart; 3070880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3080880e062SHong Zhang } 3090880e062SHong Zhang else if (in[j] < 0) continue; 3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 31177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3120880e062SHong Zhang #endif 3130880e062SHong Zhang else { 3140880e062SHong Zhang if (mat->was_assembled) { 3150880e062SHong Zhang if (!baij->colmap) { 316653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3170880e062SHong Zhang } 3180880e062SHong Zhang 3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3211302d50aSBarry Smith { PetscInt data; 3220880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3230880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3240880e062SHong Zhang } 3250880e062SHong Zhang #else 3260880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3300880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3310880e062SHong Zhang col = (col - 1)/bs; 3320880e062SHong Zhang #else 3330880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3340880e062SHong Zhang #endif 3350880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3360880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3370880e062SHong Zhang col = in[j]; 3380880e062SHong Zhang } 3390880e062SHong Zhang } 3400880e062SHong Zhang else col = in[j]; 341e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang } else { 3450880e062SHong Zhang if (!baij->donotstash) { 3460880e062SHong Zhang if (roworiented) { 3470880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3480880e062SHong Zhang } else { 3490880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang PetscFunctionReturn(0); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 360a30f8f8cSSatish Balay { 361f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3626849ba73SBarry Smith PetscErrorCode ierr; 363d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 364d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 365a30f8f8cSSatish Balay 366a30f8f8cSSatish Balay PetscFunctionBegin; 367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 36897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 369d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 370a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 371a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 372a30f8f8cSSatish Balay for (j=0; j<n; j++) { 37397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 374d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 375a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 376a30f8f8cSSatish Balay col = idxn[j] - bscstart; 377c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 378a30f8f8cSSatish Balay } else { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 384a30f8f8cSSatish Balay data --; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 389a30f8f8cSSatish Balay else { 390a30f8f8cSSatish Balay col = data + idxn[j]%bs; 391e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } else { 39629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay PetscFunctionReturn(0); 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay 4024a2ae208SSatish Balay #undef __FUNCT__ 4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 405a30f8f8cSSatish Balay { 406a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 407dfbe8321SBarry Smith PetscErrorCode ierr; 408a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 409a30f8f8cSSatish Balay 410a30f8f8cSSatish Balay PetscFunctionBegin; 411a30f8f8cSSatish Balay if (baij->size == 1) { 412a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 413a30f8f8cSSatish Balay } else { 414a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 415f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 418a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 419a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4207adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 422a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4230b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4240b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4250b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4260b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 427899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 428d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4290b8dc8d2SHong Zhang MatScalar *v; 4300b8dc8d2SHong Zhang 431*74ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 432d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4330b8dc8d2SHong Zhang /* Amat */ 4340b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4350b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4360b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4370b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4380b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4390b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4400b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4410b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4420b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4430b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4440b8dc8d2SHong Zhang /* non-diagonal block */ 4450b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang /* Bmat */ 4510b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4520b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4530b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4540b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4550b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4560b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4570b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4580b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4590b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4600b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4610b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4620b8dc8d2SHong Zhang } 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 466d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4670b8dc8d2SHong Zhang *norm = 0.0; 468d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4690b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4700b8dc8d2SHong Zhang } 471*74ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 472a30f8f8cSSatish Balay } else { 47329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 474a30f8f8cSSatish Balay } 475a30f8f8cSSatish Balay } 476a30f8f8cSSatish Balay PetscFunctionReturn(0); 477a30f8f8cSSatish Balay } 478a30f8f8cSSatish Balay 4794a2ae208SSatish Balay #undef __FUNCT__ 4804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 481dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 482a30f8f8cSSatish Balay { 483a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 484dfbe8321SBarry Smith PetscErrorCode ierr; 4851302d50aSBarry Smith PetscInt nstash,reallocs; 486a30f8f8cSSatish Balay InsertMode addv; 487a30f8f8cSSatish Balay 488a30f8f8cSSatish Balay PetscFunctionBegin; 489a30f8f8cSSatish Balay if (baij->donotstash) { 490a30f8f8cSSatish Balay PetscFunctionReturn(0); 491a30f8f8cSSatish Balay } 492a30f8f8cSSatish Balay 493a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4947adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 495a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 49629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 499a30f8f8cSSatish Balay 500d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5011e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 502a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5031e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 504a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5051e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 506a30f8f8cSSatish Balay PetscFunctionReturn(0); 507a30f8f8cSSatish Balay } 508a30f8f8cSSatish Balay 5094a2ae208SSatish Balay #undef __FUNCT__ 5104a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 511dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 512a30f8f8cSSatish Balay { 513a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 514a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5156849ba73SBarry Smith PetscErrorCode ierr; 51613f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 517e44c0bd4SBarry Smith PetscInt *row,*col; 518e44c0bd4SBarry Smith PetscTruth other_disassembled; 51913f74950SBarry Smith PetscMPIInt n; 520a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 521a30f8f8cSSatish Balay MatScalar *val; 522a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 523a30f8f8cSSatish Balay 52491c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 525a30f8f8cSSatish Balay PetscFunctionBegin; 526a30f8f8cSSatish Balay 527a30f8f8cSSatish Balay if (!baij->donotstash) { 528a30f8f8cSSatish Balay while (1) { 529a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 530a30f8f8cSSatish Balay if (!flg) break; 531a30f8f8cSSatish Balay 532a30f8f8cSSatish Balay for (i=0; i<n;) { 533a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 534a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 535a30f8f8cSSatish Balay if (j < n) ncols = j-i; 536a30f8f8cSSatish Balay else ncols = n-i; 537a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 538dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 539a30f8f8cSSatish Balay i = j; 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 543a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 544a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 545a30f8f8cSSatish Balay restore the original flags */ 546a30f8f8cSSatish Balay r1 = baij->roworiented; 547a30f8f8cSSatish Balay r2 = a->roworiented; 54891c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 549a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 550a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 552a30f8f8cSSatish Balay while (1) { 553a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 554a30f8f8cSSatish Balay if (!flg) break; 555a30f8f8cSSatish Balay 556a30f8f8cSSatish Balay for (i=0; i<n;) { 557a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 558a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 559a30f8f8cSSatish Balay if (j < n) ncols = j-i; 560a30f8f8cSSatish Balay else ncols = n-i; 561dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 562a30f8f8cSSatish Balay i = j; 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 566a30f8f8cSSatish Balay baij->roworiented = r1; 567a30f8f8cSSatish Balay a->roworiented = r2; 56891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay 571a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 572a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 573a30f8f8cSSatish Balay 574a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 575a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 576a30f8f8cSSatish Balay /* 577a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 578a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 579a30f8f8cSSatish Balay */ 580a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5817adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 582a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 583c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 584a30f8f8cSSatish Balay } 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay 587a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58840781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 589a30f8f8cSSatish Balay } 59091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 591a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 592a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay 594*74ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 595a30f8f8cSSatish Balay baij->rowvalues = 0; 5965222a1afSHong Zhang 597a30f8f8cSSatish Balay PetscFunctionReturn(0); 598a30f8f8cSSatish Balay } 599a30f8f8cSSatish Balay 600dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6014a2ae208SSatish Balay #undef __FUNCT__ 6024a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6036849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 604a30f8f8cSSatish Balay { 605a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 606dfbe8321SBarry Smith PetscErrorCode ierr; 607d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6081302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 60932077d6dSBarry Smith PetscTruth iascii,isdraw; 610b0a32e0cSBarry Smith PetscViewer sviewer; 611f3ef73ceSBarry Smith PetscViewerFormat format; 612a30f8f8cSSatish Balay 613a30f8f8cSSatish Balay PetscFunctionBegin; 61432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 615fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 61632077d6dSBarry Smith if (iascii) { 617b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 618456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 619a30f8f8cSSatish Balay MatInfo info; 6207adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 621a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62277431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 623d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 624d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 625a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 627a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 62877431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 629b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63007d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 631a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 632a30f8f8cSSatish Balay PetscFunctionReturn(0); 633fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 635a30f8f8cSSatish Balay PetscFunctionReturn(0); 636c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 637c1490034SHong Zhang PetscFunctionReturn(0); 638a30f8f8cSSatish Balay } 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay 641a30f8f8cSSatish Balay if (isdraw) { 642b0a32e0cSBarry Smith PetscDraw draw; 643a30f8f8cSSatish Balay PetscTruth isnull; 644b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 645b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 646a30f8f8cSSatish Balay } 647a30f8f8cSSatish Balay 648a30f8f8cSSatish Balay if (size == 1) { 6497adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 650a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 651a30f8f8cSSatish Balay } else { 652a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 653a30f8f8cSSatish Balay Mat A; 65465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 656d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 657a30f8f8cSSatish Balay MatScalar *a; 658a30f8f8cSSatish Balay 659f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6607adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 661a30f8f8cSSatish Balay if (!rank) { 662f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 663a30f8f8cSSatish Balay } else { 664f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 665a30f8f8cSSatish Balay } 666f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 667d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 66852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay /* copy over the A part */ 67165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 672a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6731302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 676e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 677a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 678a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 679e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 680a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 681dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 682a30f8f8cSSatish Balay col++; a += bs; 683a30f8f8cSSatish Balay } 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay /* copy over the B part */ 68765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 689a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 690e9f7bc9eSHong Zhang 691e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 692a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 693a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 694a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 695a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 696799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 697a30f8f8cSSatish Balay col++; a += bs; 698a30f8f8cSSatish Balay } 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 702a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 704a30f8f8cSSatish Balay /* 705a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 706b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 707a30f8f8cSSatish Balay */ 708b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 70965d70643SHong Zhang if (!rank) { 7107adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 711a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 712a30f8f8cSSatish Balay } 713b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 715a30f8f8cSSatish Balay } 716a30f8f8cSSatish Balay PetscFunctionReturn(0); 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay 7194a2ae208SSatish Balay #undef __FUNCT__ 7204a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 721dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 722a30f8f8cSSatish Balay { 723dfbe8321SBarry Smith PetscErrorCode ierr; 72432077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 725a30f8f8cSSatish Balay 726a30f8f8cSSatish Balay PetscFunctionBegin; 72732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 728fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 729b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 730fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73132077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 732a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 733a30f8f8cSSatish Balay } else { 7341302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay PetscFunctionReturn(0); 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay 7394a2ae208SSatish Balay #undef __FUNCT__ 7404a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 741dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 742a30f8f8cSSatish Balay { 743a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 744dfbe8321SBarry Smith PetscErrorCode ierr; 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay PetscFunctionBegin; 747a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 748d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 749a30f8f8cSSatish Balay #endif 750a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 751a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 752a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 754a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7559c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 756a30f8f8cSSatish Balay #else 75705b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 758a30f8f8cSSatish Balay #endif 75905b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 760a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 761a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76240781036SHong Zhang if (baij->slvec0) { 76340781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76440781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76540781036SHong Zhang } 76640781036SHong Zhang if (baij->slvec1) { 76740781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 76840781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 76940781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77040781036SHong Zhang } 77140781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 77205b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 77305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 775fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 776fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 777fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 77865460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 77905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 780a30f8f8cSSatish Balay #endif 78159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 783899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 784a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 785901853e0SKris Buschelman 786dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 787901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 788901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 789901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 791a30f8f8cSSatish Balay PetscFunctionReturn(0); 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay 7944a2ae208SSatish Balay #undef __FUNCT__ 795547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 796547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 797547795f9SHong Zhang { 798547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 799547795f9SHong Zhang PetscErrorCode ierr; 800547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 801547795f9SHong Zhang PetscScalar *x,*from; 802547795f9SHong Zhang 803547795f9SHong Zhang PetscFunctionBegin; 804547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 805547795f9SHong Zhang if (nt != A->cmap->n) { 806547795f9SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 807547795f9SHong Zhang } 808547795f9SHong Zhang 809547795f9SHong Zhang /* diagonal part */ 810547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 811547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 812547795f9SHong Zhang 813547795f9SHong Zhang /* subdiagonal part */ 814547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 815547795f9SHong Zhang 816547795f9SHong Zhang /* copy x into the vec slvec0 */ 817547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 818547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 821547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 823547795f9SHong Zhang 824547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826547795f9SHong Zhang /* supperdiagonal part */ 827547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 828547795f9SHong Zhang PetscFunctionReturn(0); 829547795f9SHong Zhang } 830547795f9SHong Zhang 831547795f9SHong Zhang #undef __FUNCT__ 832a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 833dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 834a9d4b620SHong Zhang { 835a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 836dfbe8321SBarry Smith PetscErrorCode ierr; 837d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 838fa22f6d0SBarry Smith PetscScalar *x,*from; 839a9d4b620SHong Zhang 840a9d4b620SHong Zhang PetscFunctionBegin; 841a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 842d0f46423SBarry Smith if (nt != A->cmap->n) { 843a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 844a9d4b620SHong Zhang } 845a9d4b620SHong Zhang 846a9d4b620SHong Zhang /* diagonal part */ 847a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 848fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 849a9d4b620SHong Zhang 850a9d4b620SHong Zhang /* subdiagonal part */ 851a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 852fc165ae2SBarry Smith 853a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8541ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8551ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 856a9d4b620SHong Zhang 857fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 858fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8591ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 860fc165ae2SBarry Smith 861fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 862ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 863a9d4b620SHong Zhang /* supperdiagonal part */ 864a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 865a9d4b620SHong Zhang PetscFunctionReturn(0); 866a9d4b620SHong Zhang } 867a9d4b620SHong Zhang 868a9d4b620SHong Zhang #undef __FUNCT__ 86940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 870dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 871a30f8f8cSSatish Balay { 872a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 873dfbe8321SBarry Smith PetscErrorCode ierr; 8741302d50aSBarry Smith PetscInt nt; 875a30f8f8cSSatish Balay 876a30f8f8cSSatish Balay PetscFunctionBegin; 877a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 878d0f46423SBarry Smith if (nt != A->cmap->n) { 87929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 880a30f8f8cSSatish Balay } 881a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 882d0f46423SBarry Smith if (nt != A->rmap->N) { 88329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 884a30f8f8cSSatish Balay } 88565d70643SHong Zhang 886ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 887b941877fSHong Zhang /* do diagonal part */ 888b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 889b941877fSHong Zhang /* do supperdiagonal part */ 890ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 891b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 892b941877fSHong Zhang /* do subdiagonal part */ 893b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 894ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 895ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89665d70643SHong Zhang 897a30f8f8cSSatish Balay PetscFunctionReturn(0); 898a30f8f8cSSatish Balay } 899a30f8f8cSSatish Balay 9004a2ae208SSatish Balay #undef __FUNCT__ 9014a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 902dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 903a30f8f8cSSatish Balay { 904de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 905dfbe8321SBarry Smith PetscErrorCode ierr; 906d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 907a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 908a9d4b620SHong Zhang 909a9d4b620SHong Zhang PetscFunctionBegin; 910a9d4b620SHong Zhang /* 9117adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9127adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 913a9d4b620SHong Zhang */ 914a9d4b620SHong Zhang /* diagonal part */ 915a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9162dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 917a9d4b620SHong Zhang 918a9d4b620SHong Zhang /* subdiagonal part */ 919a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 920a9d4b620SHong Zhang 921a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9221ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9231ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 924a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9251ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 926a9d4b620SHong Zhang 927ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9281ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 929ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 930a9d4b620SHong Zhang 931a9d4b620SHong Zhang /* supperdiagonal part */ 932a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang PetscFunctionReturn(0); 935a9d4b620SHong Zhang } 936a9d4b620SHong Zhang 937a9d4b620SHong Zhang #undef __FUNCT__ 938a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 939dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 940a9d4b620SHong Zhang { 941a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 942dfbe8321SBarry Smith PetscErrorCode ierr; 943a30f8f8cSSatish Balay 944a30f8f8cSSatish Balay PetscFunctionBegin; 945ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 946b941877fSHong Zhang /* do diagonal part */ 947b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 948b941877fSHong Zhang /* do supperdiagonal part */ 949ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 950de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 951de8b6608SHong Zhang 952b941877fSHong Zhang /* do subdiagonal part */ 953a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 954ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 955ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 956aa482183SHong Zhang 957a30f8f8cSSatish Balay PetscFunctionReturn(0); 958a30f8f8cSSatish Balay } 959a30f8f8cSSatish Balay 960a30f8f8cSSatish Balay /* 961a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 962a30f8f8cSSatish Balay diagonal block 963a30f8f8cSSatish Balay */ 9644a2ae208SSatish Balay #undef __FUNCT__ 9654a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 966dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 967a30f8f8cSSatish Balay { 968a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 969dfbe8321SBarry Smith PetscErrorCode ierr; 970a30f8f8cSSatish Balay 971a30f8f8cSSatish Balay PetscFunctionBegin; 972d0f46423SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 973a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 974a30f8f8cSSatish Balay PetscFunctionReturn(0); 975a30f8f8cSSatish Balay } 976a30f8f8cSSatish Balay 9774a2ae208SSatish Balay #undef __FUNCT__ 9784a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 979f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 980a30f8f8cSSatish Balay { 981a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 982dfbe8321SBarry Smith PetscErrorCode ierr; 983a30f8f8cSSatish Balay 984a30f8f8cSSatish Balay PetscFunctionBegin; 985f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 986f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 987a30f8f8cSSatish Balay PetscFunctionReturn(0); 988a30f8f8cSSatish Balay } 989a30f8f8cSSatish Balay 9904a2ae208SSatish Balay #undef __FUNCT__ 9914a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9921302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 993a30f8f8cSSatish Balay { 994d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 995d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 996d0d4cfc2SHong Zhang PetscErrorCode ierr; 997d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 998d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 999899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1000d0d4cfc2SHong Zhang 1001a30f8f8cSSatish Balay PetscFunctionBegin; 10024eeb8337SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1003d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1004d0d4cfc2SHong Zhang 1005d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1006d0d4cfc2SHong Zhang /* 1007d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1008d0d4cfc2SHong Zhang */ 1009d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1010d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1011d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1012d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1013d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1014d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1015d0d4cfc2SHong Zhang } 1016*74ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1017d0d4cfc2SHong Zhang } 1018d0d4cfc2SHong Zhang 1019d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1020d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1021d0d4cfc2SHong Zhang 1022d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1023d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1024d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1025d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1026d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1027d0d4cfc2SHong Zhang nztot = nzA + nzB; 1028d0d4cfc2SHong Zhang 1029d0d4cfc2SHong Zhang cmap = mat->garray; 1030d0d4cfc2SHong Zhang if (v || idx) { 1031d0d4cfc2SHong Zhang if (nztot) { 1032d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1033d0d4cfc2SHong Zhang PetscInt imark = -1; 1034d0d4cfc2SHong Zhang if (v) { 1035d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1036d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1037d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1038d0d4cfc2SHong Zhang else break; 1039d0d4cfc2SHong Zhang } 1040d0d4cfc2SHong Zhang imark = i; 1041d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1042d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1043d0d4cfc2SHong Zhang } 1044d0d4cfc2SHong Zhang if (idx) { 1045d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1046d0d4cfc2SHong Zhang if (imark > -1) { 1047d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1048d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1049d0d4cfc2SHong Zhang } 1050d0d4cfc2SHong Zhang } else { 1051d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1052d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1053d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1054d0d4cfc2SHong Zhang else break; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang imark = i; 1057d0d4cfc2SHong Zhang } 1058d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1059d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } else { 1062d0d4cfc2SHong Zhang if (idx) *idx = 0; 1063d0d4cfc2SHong Zhang if (v) *v = 0; 1064d0d4cfc2SHong Zhang } 1065d0d4cfc2SHong Zhang } 1066d0d4cfc2SHong Zhang *nz = nztot; 1067d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1068d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1069a30f8f8cSSatish Balay PetscFunctionReturn(0); 1070a30f8f8cSSatish Balay } 1071a30f8f8cSSatish Balay 10724a2ae208SSatish Balay #undef __FUNCT__ 10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1075a30f8f8cSSatish Balay { 1076a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1077a30f8f8cSSatish Balay 1078a30f8f8cSSatish Balay PetscFunctionBegin; 1079abc0a331SBarry Smith if (!baij->getrowactive) { 1080abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1081a30f8f8cSSatish Balay } 1082a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1083a30f8f8cSSatish Balay PetscFunctionReturn(0); 1084a30f8f8cSSatish Balay } 1085a30f8f8cSSatish Balay 10864a2ae208SSatish Balay #undef __FUNCT__ 1087d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1088d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1089d0d4cfc2SHong Zhang { 1090d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1091d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1092d0d4cfc2SHong Zhang 1093d0d4cfc2SHong Zhang PetscFunctionBegin; 1094d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1095d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1096d0d4cfc2SHong Zhang } 1097d0d4cfc2SHong Zhang #undef __FUNCT__ 1098d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1099d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1100d0d4cfc2SHong Zhang { 1101d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1102d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1103d0d4cfc2SHong Zhang 1104d0d4cfc2SHong Zhang PetscFunctionBegin; 1105d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1106d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1107d0d4cfc2SHong Zhang } 1108d0d4cfc2SHong Zhang 1109d0d4cfc2SHong Zhang #undef __FUNCT__ 111099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 111199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111299cafbc1SBarry Smith { 111399cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111499cafbc1SBarry Smith PetscErrorCode ierr; 111599cafbc1SBarry Smith 111699cafbc1SBarry Smith PetscFunctionBegin; 111799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111999cafbc1SBarry Smith PetscFunctionReturn(0); 112099cafbc1SBarry Smith } 112199cafbc1SBarry Smith 112299cafbc1SBarry Smith #undef __FUNCT__ 112399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112599cafbc1SBarry Smith { 112699cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112799cafbc1SBarry Smith PetscErrorCode ierr; 112899cafbc1SBarry Smith 112999cafbc1SBarry Smith PetscFunctionBegin; 113099cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 113199cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113299cafbc1SBarry Smith PetscFunctionReturn(0); 113399cafbc1SBarry Smith } 113499cafbc1SBarry Smith 113599cafbc1SBarry Smith #undef __FUNCT__ 11364a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1137dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1138a30f8f8cSSatish Balay { 1139a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1140dfbe8321SBarry Smith PetscErrorCode ierr; 1141a30f8f8cSSatish Balay 1142a30f8f8cSSatish Balay PetscFunctionBegin; 1143a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1144a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1145a30f8f8cSSatish Balay PetscFunctionReturn(0); 1146a30f8f8cSSatish Balay } 1147a30f8f8cSSatish Balay 11484a2ae208SSatish Balay #undef __FUNCT__ 11494a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1150dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1151a30f8f8cSSatish Balay { 1152a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1153a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1154dfbe8321SBarry Smith PetscErrorCode ierr; 1155a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1156a30f8f8cSSatish Balay 1157a30f8f8cSSatish Balay PetscFunctionBegin; 1158d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1159a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1160a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1161a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1162a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1163a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1164a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1165a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1166a30f8f8cSSatish Balay info->nz_used = isend[0]; 1167a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1168a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1169a30f8f8cSSatish Balay info->memory = isend[3]; 1170a30f8f8cSSatish Balay info->mallocs = isend[4]; 1171a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11727adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1173a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1174a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1175a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1176a30f8f8cSSatish Balay info->memory = irecv[3]; 1177a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1178a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11797adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1180a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1181a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1182a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1183a30f8f8cSSatish Balay info->memory = irecv[3]; 1184a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1185a30f8f8cSSatish Balay } else { 118677431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1187a30f8f8cSSatish Balay } 1188a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1189a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1190a30f8f8cSSatish Balay info->factor_mallocs = 0; 1191a30f8f8cSSatish Balay PetscFunctionReturn(0); 1192a30f8f8cSSatish Balay } 1193a30f8f8cSSatish Balay 11944a2ae208SSatish Balay #undef __FUNCT__ 11954a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11964e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1197a30f8f8cSSatish Balay { 1198a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1199d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1200dfbe8321SBarry Smith PetscErrorCode ierr; 1201a30f8f8cSSatish Balay 1202a30f8f8cSSatish Balay PetscFunctionBegin; 1203e98b92d7SKris Buschelman switch (op) { 1204512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1205e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 120628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1207a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1208e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12094e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12104e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1211e98b92d7SKris Buschelman break; 1212e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12134e0d8c25SBarry Smith a->roworiented = flg; 12144e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12154e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1216e98b92d7SKris Buschelman break; 12174e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1218290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1219e98b92d7SKris Buschelman break; 1220e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12214e0d8c25SBarry Smith a->donotstash = flg; 1222e98b92d7SKris Buschelman break; 1223e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12244e0d8c25SBarry Smith a->ht_flag = flg; 1225e98b92d7SKris Buschelman break; 12269a4540c5SBarry Smith case MAT_HERMITIAN: 1227547795f9SHong Zhang if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1228eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1229547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1230eeffb40dSHong Zhang break; 123177e54ba9SKris Buschelman case MAT_SYMMETRIC: 1232eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1233eeffb40dSHong Zhang break; 123477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1235eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1236eeffb40dSHong Zhang break; 12379a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12384e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1239290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124077e54ba9SKris Buschelman break; 1241d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12424e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1243d0d4cfc2SHong Zhang break; 1244d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12454e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1246d0d4cfc2SHong Zhang break; 1247d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12484e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1249d0d4cfc2SHong Zhang break; 1250e98b92d7SKris Buschelman default: 1251ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1252a30f8f8cSSatish Balay } 1253a30f8f8cSSatish Balay PetscFunctionReturn(0); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay 12564a2ae208SSatish Balay #undef __FUNCT__ 12578115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1258fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1259a30f8f8cSSatish Balay { 1260dfbe8321SBarry Smith PetscErrorCode ierr; 1261a30f8f8cSSatish Balay PetscFunctionBegin; 1262815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1263999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1264fc4dec0aSBarry Smith } 12658115998fSBarry Smith PetscFunctionReturn(0); 1266a30f8f8cSSatish Balay } 1267a30f8f8cSSatish Balay 12684a2ae208SSatish Balay #undef __FUNCT__ 12694a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1270dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1271a30f8f8cSSatish Balay { 1272a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1273a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1274dfbe8321SBarry Smith PetscErrorCode ierr; 12755e90f9d9SHong Zhang PetscInt nv,m,n; 1276b3bf805bSHong Zhang PetscTruth flg; 1277a30f8f8cSSatish Balay 1278a30f8f8cSSatish Balay PetscFunctionBegin; 1279a30f8f8cSSatish Balay if (ll != rr){ 1280b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1281b3bf805bSHong Zhang if (!flg) 128229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1283a30f8f8cSSatish Balay } 1284b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1285b3bf805bSHong Zhang 12865e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12875e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1288b3bf805bSHong Zhang 12895e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12905e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12915e90f9d9SHong Zhang 1292ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12935e90f9d9SHong Zhang 12945e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1295a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12965e90f9d9SHong Zhang 12975e90f9d9SHong Zhang /* scale the diagonal part */ 1298a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1299a30f8f8cSSatish Balay 13005e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1301ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay PetscFunctionReturn(0); 1304a30f8f8cSSatish Balay } 1305a30f8f8cSSatish Balay 13064a2ae208SSatish Balay #undef __FUNCT__ 13074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1308dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1309a30f8f8cSSatish Balay { 1310f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1311dfbe8321SBarry Smith PetscErrorCode ierr; 1312a30f8f8cSSatish Balay 1313a30f8f8cSSatish Balay PetscFunctionBegin; 1314a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1315a30f8f8cSSatish Balay PetscFunctionReturn(0); 1316a30f8f8cSSatish Balay } 1317a30f8f8cSSatish Balay 13186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1319a30f8f8cSSatish Balay 13204a2ae208SSatish Balay #undef __FUNCT__ 13214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1322dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1323a30f8f8cSSatish Balay { 1324a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1325a30f8f8cSSatish Balay Mat a,b,c,d; 1326a30f8f8cSSatish Balay PetscTruth flg; 1327dfbe8321SBarry Smith PetscErrorCode ierr; 1328a30f8f8cSSatish Balay 1329a30f8f8cSSatish Balay PetscFunctionBegin; 1330a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1331a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1332a30f8f8cSSatish Balay 1333a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1334abc0a331SBarry Smith if (flg) { 1335a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1336a30f8f8cSSatish Balay } 13377adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay PetscFunctionReturn(0); 1339a30f8f8cSSatish Balay } 1340a30f8f8cSSatish Balay 13414a2ae208SSatish Balay #undef __FUNCT__ 13423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13433c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13443c896bc6SHong Zhang { 13453c896bc6SHong Zhang PetscErrorCode ierr; 13463c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13473c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13483c896bc6SHong Zhang 13493c896bc6SHong Zhang PetscFunctionBegin; 13503c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13513c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1352d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13533c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1354d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13553c896bc6SHong Zhang } else { 13563c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13573c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13583c896bc6SHong Zhang } 13593c896bc6SHong Zhang PetscFunctionReturn(0); 13603c896bc6SHong Zhang } 13613c896bc6SHong Zhang 13623c896bc6SHong Zhang #undef __FUNCT__ 13634a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1364dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1365273d9f13SBarry Smith { 1366dfbe8321SBarry Smith PetscErrorCode ierr; 1367273d9f13SBarry Smith 1368273d9f13SBarry Smith PetscFunctionBegin; 1369db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1370273d9f13SBarry Smith PetscFunctionReturn(0); 1371273d9f13SBarry Smith } 1372a5e6ed63SBarry Smith 13734fe895cdSHong Zhang #include "petscblaslapack.h" 13744fe895cdSHong Zhang #undef __FUNCT__ 13754fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13764fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13774fe895cdSHong Zhang { 13784fe895cdSHong Zhang PetscErrorCode ierr; 13794fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13804fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13814fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13824fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13834fe895cdSHong Zhang 13844fe895cdSHong Zhang PetscFunctionBegin; 13854fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13864fe895cdSHong Zhang PetscScalar alpha = a; 13874fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13884fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13890805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13904fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13914fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13924fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13930805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13944fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13954fe895cdSHong Zhang } else { 1396d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13974fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1398d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 13994fe895cdSHong Zhang } 14004fe895cdSHong Zhang PetscFunctionReturn(0); 14014fe895cdSHong Zhang } 14024fe895cdSHong Zhang 1403a5e6ed63SBarry Smith #undef __FUNCT__ 14046363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14056363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14066363de48SJed Brown { 14076363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14086363de48SJed Brown PetscInt rbs,cbs; 14096363de48SJed Brown PetscErrorCode ierr; 14106363de48SJed Brown 14116363de48SJed Brown PetscFunctionBegin; 14126363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14136363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14146363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14156363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 14166363de48SJed Brown if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 14176363de48SJed Brown if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14186363de48SJed Brown PetscFunctionReturn(0); 14196363de48SJed Brown } 14206363de48SJed Brown 14216363de48SJed Brown #undef __FUNCT__ 1422a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14231302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1424a5e6ed63SBarry Smith { 14256849ba73SBarry Smith PetscErrorCode ierr; 14261302d50aSBarry Smith PetscInt i; 1427a5e6ed63SBarry Smith PetscTruth flg; 1428a5e6ed63SBarry Smith 14296849ba73SBarry Smith PetscFunctionBegin; 1430a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1431a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1432a5e6ed63SBarry Smith if (!flg) { 14331302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1434a5e6ed63SBarry Smith } 1435a5e6ed63SBarry Smith } 1436a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1437a5e6ed63SBarry Smith PetscFunctionReturn(0); 1438a5e6ed63SBarry Smith } 1439a5e6ed63SBarry Smith 1440a5e6ed63SBarry Smith 1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1443a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1444a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1445a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1446a9d4b620SHong Zhang MatMult_MPISBAIJ, 144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1448431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1449431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 1452a30f8f8cSSatish Balay 0, 145397304618SKris Buschelman /*10*/ 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 145641f059aeSBarry Smith MatSOR_MPISBAIJ, 1457a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1459a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1460a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1461a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1462a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1464a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1465a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1466a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1467d519adbfSMatthew Knepley /*24*/ 0, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1473b5df2d14SHong Zhang 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1483a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1484d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1485a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14863c896bc6SHong Zhang MatCopy_MPISBAIJ, 1487d519adbfSMatthew Knepley /*44*/ 0, 1488a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 1496a30f8f8cSSatish Balay 0, 1497d519adbfSMatthew Knepley /*54*/ 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1502d519adbfSMatthew Knepley /*59*/ 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505357abbc8SBarry Smith 0, 150624d5174aSHong Zhang 0, 1507d519adbfSMatthew Knepley /*64*/ 0, 150824d5174aSHong Zhang 0, 150924d5174aSHong Zhang 0, 151024d5174aSHong Zhang 0, 151124d5174aSHong Zhang 0, 1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151324d5174aSHong Zhang 0, 151497304618SKris Buschelman 0, 151597304618SKris Buschelman 0, 151697304618SKris Buschelman 0, 1517d519adbfSMatthew Knepley /*74*/ 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 152197304618SKris Buschelman 0, 1522d519adbfSMatthew Knepley /*79*/ 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 1526865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1527d519adbfSMatthew Knepley /*84*/ 0, 1528865e5f61SKris Buschelman 0, 1529865e5f61SKris Buschelman 0, 1530865e5f61SKris Buschelman 0, 1531865e5f61SKris Buschelman 0, 1532d519adbfSMatthew Knepley /*89*/ 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536865e5f61SKris Buschelman 0, 1537d519adbfSMatthew Knepley /*94*/ 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 154099cafbc1SBarry Smith 0, 154199cafbc1SBarry Smith 0, 1542d519adbfSMatthew Knepley /*99*/ 0, 154399cafbc1SBarry Smith 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 154699cafbc1SBarry Smith 0, 1547d519adbfSMatthew Knepley /*104*/0, 154899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1549d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1550d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1551d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 155299cafbc1SBarry Smith }; 1553a30f8f8cSSatish Balay 1554a30f8f8cSSatish Balay 1555a30f8f8cSSatish Balay EXTERN_C_BEGIN 15564a2ae208SSatish Balay #undef __FUNCT__ 15574a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1558be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1559a30f8f8cSSatish Balay { 1560a30f8f8cSSatish Balay PetscFunctionBegin; 1561a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1562a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1563a30f8f8cSSatish Balay PetscFunctionReturn(0); 1564a30f8f8cSSatish Balay } 1565a30f8f8cSSatish Balay EXTERN_C_END 1566a30f8f8cSSatish Balay 1567273d9f13SBarry Smith EXTERN_C_BEGIN 15684a2ae208SSatish Balay #undef __FUNCT__ 1569a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1570be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1571a23d5eceSKris Buschelman { 1572a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1573dfbe8321SBarry Smith PetscErrorCode ierr; 1574db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1575a23d5eceSKris Buschelman 1576a23d5eceSKris Buschelman PetscFunctionBegin; 1577db4efbfdSBarry Smith if (bs < 0){ 15787adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1579db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15808c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1581db4efbfdSBarry Smith bs = PetscAbs(bs); 1582db4efbfdSBarry Smith } 1583db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 1584db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1585db4efbfdSBarry Smith } 1586db4efbfdSBarry Smith bs = newbs; 1587a23d5eceSKris Buschelman 1588a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1589a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 159077431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 159177431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1592899cda47SBarry Smith 1593d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 159426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1596899cda47SBarry Smith 1597a23d5eceSKris Buschelman if (d_nnz) { 1598d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 159977431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1600a23d5eceSKris Buschelman } 1601a23d5eceSKris Buschelman } 1602a23d5eceSKris Buschelman if (o_nnz) { 1603d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 160477431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1605a23d5eceSKris Buschelman } 1606a23d5eceSKris Buschelman } 1607a23d5eceSKris Buschelman 1608a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1609d0f46423SBarry Smith mbs = B->rmap->n/bs; 1610d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1611d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1612d0f46423SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1613a23d5eceSKris Buschelman } 1614a23d5eceSKris Buschelman 1615d0f46423SBarry Smith B->rmap->bs = bs; 1616a23d5eceSKris Buschelman b->bs2 = bs*bs; 1617a23d5eceSKris Buschelman b->mbs = mbs; 1618a23d5eceSKris Buschelman b->nbs = mbs; 1619a23d5eceSKris Buschelman b->Mbs = Mbs; 1620a23d5eceSKris Buschelman b->Nbs = Mbs; 1621a23d5eceSKris Buschelman 1622a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1623d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1624a23d5eceSKris Buschelman } 1625d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1626d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1627a23d5eceSKris Buschelman 1628d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1629d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1630a23d5eceSKris Buschelman 1631526dfc15SBarry Smith if (!B->preallocated) { 1632f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1633d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16349c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 163552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1636f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1637d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16384aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 163952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1640a23d5eceSKris Buschelman /* build cache for off array entries formed */ 16417adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1642526dfc15SBarry Smith } 1643a23d5eceSKris Buschelman 1644526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1645526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1646526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1647a23d5eceSKris Buschelman PetscFunctionReturn(0); 1648a23d5eceSKris Buschelman } 1649a23d5eceSKris Buschelman EXTERN_C_END 1650a23d5eceSKris Buschelman 16515c9eb25fSBarry Smith EXTERN_C_BEGIN 1652611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1653611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1654611f576cSBarry Smith #endif 1655611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16565c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1657611f576cSBarry Smith #endif 1658b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1659b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1660b5e56a35SBarry Smith #endif 16615c9eb25fSBarry Smith EXTERN_C_END 16625c9eb25fSBarry Smith 16630bad9183SKris Buschelman /*MC 1664fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16650bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16660bad9183SKris Buschelman 16670bad9183SKris Buschelman Options Database Keys: 16680bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16690bad9183SKris Buschelman 16700bad9183SKris Buschelman Level: beginner 16710bad9183SKris Buschelman 16720bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16730bad9183SKris Buschelman M*/ 16740bad9183SKris Buschelman 1675a23d5eceSKris Buschelman EXTERN_C_BEGIN 1676a23d5eceSKris Buschelman #undef __FUNCT__ 16774a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1678be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1679b5df2d14SHong Zhang { 1680b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1681dfbe8321SBarry Smith PetscErrorCode ierr; 1682b5df2d14SHong Zhang PetscTruth flg; 1683b5df2d14SHong Zhang 1684b5df2d14SHong Zhang PetscFunctionBegin; 1685b5df2d14SHong Zhang 168638f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1687b0a32e0cSBarry Smith B->data = (void*)b; 1688b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1689b5df2d14SHong Zhang 1690b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1691b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1692b5df2d14SHong Zhang B->mapping = 0; 1693b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16967adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16977adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1700899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang /* build cache for off array entries formed */ 17037adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1704b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1705b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1706b5df2d14SHong Zhang b->garray = PETSC_NULL; 1707b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1708b5df2d14SHong Zhang 1709b5df2d14SHong Zhang /* stuff used in block assembly */ 1710b5df2d14SHong Zhang b->barray = 0; 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1713b5df2d14SHong Zhang b->lvec = 0; 1714b5df2d14SHong Zhang b->Mvctx = 0; 171540781036SHong Zhang b->slvec0 = 0; 171640781036SHong Zhang b->slvec0b = 0; 171740781036SHong Zhang b->slvec1 = 0; 171840781036SHong Zhang b->slvec1a = 0; 171940781036SHong Zhang b->slvec1b = 0; 172040781036SHong Zhang b->sMvctx = 0; 1721b5df2d14SHong Zhang 1722b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1723b5df2d14SHong Zhang b->rowindices = 0; 1724b5df2d14SHong Zhang b->rowvalues = 0; 1725b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1726b5df2d14SHong Zhang 1727b5df2d14SHong Zhang /* hash table stuff */ 1728b5df2d14SHong Zhang b->ht = 0; 1729b5df2d14SHong Zhang b->hd = 0; 1730b5df2d14SHong Zhang b->ht_size = 0; 1731b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1732b5df2d14SHong Zhang b->ht_fact = 0; 1733b5df2d14SHong Zhang b->ht_total_ct = 0; 1734b5df2d14SHong Zhang b->ht_insert_ct = 0; 1735b5df2d14SHong Zhang 173659ffdab8SBarry Smith b->in_loc = 0; 173759ffdab8SBarry Smith b->v_loc = 0; 173859ffdab8SBarry Smith b->n_loc = 0; 17397adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17408c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1741b5df2d14SHong Zhang if (flg) { 1742f6275e2eSBarry Smith PetscReal fact = 1.39; 17434e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17448c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1745b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1746b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17471e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1748b5df2d14SHong Zhang } 17498c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17508c07d4e3SBarry Smith 1751b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1752ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1753b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1754b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1755b5e56a35SBarry Smith #endif 1756611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1757ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 17585c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 17595c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1760611f576cSBarry Smith #endif 1761611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1762ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17635c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17645c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1765611f576cSBarry Smith #endif 1766b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1767b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1768b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1769b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1770b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1771b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1772b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1773b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1774b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1775a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1776a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1777a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 177823ce1328SBarry Smith B->symmetric = PETSC_TRUE; 177923ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178023ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178123ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1783b5df2d14SHong Zhang PetscFunctionReturn(0); 1784b5df2d14SHong Zhang } 1785273d9f13SBarry Smith EXTERN_C_END 1786b5df2d14SHong Zhang 1787209238afSKris Buschelman /*MC 1788002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1789209238afSKris Buschelman 1790209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1791209238afSKris Buschelman and MATMPISBAIJ otherwise. 1792209238afSKris Buschelman 1793209238afSKris Buschelman Options Database Keys: 1794209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1795209238afSKris Buschelman 1796209238afSKris Buschelman Level: beginner 1797209238afSKris Buschelman 1798209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1799209238afSKris Buschelman M*/ 1800209238afSKris Buschelman 1801209238afSKris Buschelman EXTERN_C_BEGIN 1802209238afSKris Buschelman #undef __FUNCT__ 1803209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1804be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1805dfbe8321SBarry Smith { 18066849ba73SBarry Smith PetscErrorCode ierr; 18071302d50aSBarry Smith PetscMPIInt size; 1808209238afSKris Buschelman 1809209238afSKris Buschelman PetscFunctionBegin; 18107adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1811209238afSKris Buschelman if (size == 1) { 1812209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1813209238afSKris Buschelman } else { 1814209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1815209238afSKris Buschelman } 1816209238afSKris Buschelman PetscFunctionReturn(0); 1817209238afSKris Buschelman } 1818209238afSKris Buschelman EXTERN_C_END 1819209238afSKris Buschelman 18204a2ae208SSatish Balay #undef __FUNCT__ 18214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1822b5df2d14SHong Zhang /*@C 1823b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1824b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1825b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1826b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1827b5df2d14SHong Zhang 1828b5df2d14SHong Zhang Collective on Mat 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang Input Parameters: 1831b5df2d14SHong Zhang + A - the matrix 1832b5df2d14SHong Zhang . bs - size of blockk 1833b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1834b5df2d14SHong Zhang submatrix (same for all local rows) 1835b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18366d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18376d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18386d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1839b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1840b5df2d14SHong Zhang submatrix (same for all local rows). 1841b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1842b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1843b5df2d14SHong Zhang each block row) or PETSC_NULL. 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang 1846b5df2d14SHong Zhang Options Database Keys: 1847b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1848b5df2d14SHong Zhang block calculations (much slower) 1849b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1850b5df2d14SHong Zhang 1851b5df2d14SHong Zhang Notes: 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1854b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1855b5df2d14SHong Zhang 185649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 185749a6f317SBarry Smith 1858b5df2d14SHong Zhang Storage Information: 1859b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1860b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1861b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1862b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1865b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1866b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1867b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1868b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1869b5df2d14SHong Zhang 1870aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1871aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1872aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1873aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1874aa95bbe8SBarry Smith 1875b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1876b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1877b5df2d14SHong Zhang 1878b5df2d14SHong Zhang .vb 1879b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1880b5df2d14SHong Zhang ------------------- 1881b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1882b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1883b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1884b5df2d14SHong Zhang ------------------- 1885b5df2d14SHong Zhang .ve 1886b5df2d14SHong Zhang 1887b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1888b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18896d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18906d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1891b5df2d14SHong Zhang 18926d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18936d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1894b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1895b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1896b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1897b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1898b5df2d14SHong Zhang matrices. 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang Level: intermediate 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1903b5df2d14SHong Zhang 1904b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1905b5df2d14SHong Zhang @*/ 1906be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1907b5df2d14SHong Zhang { 19081302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1909b5df2d14SHong Zhang 1910b5df2d14SHong Zhang PetscFunctionBegin; 1911a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1912a23d5eceSKris Buschelman if (f) { 1913a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1914b5df2d14SHong Zhang } 1915b5df2d14SHong Zhang PetscFunctionReturn(0); 1916b5df2d14SHong Zhang } 1917b5df2d14SHong Zhang 19184a2ae208SSatish Balay #undef __FUNCT__ 19194a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1920a30f8f8cSSatish Balay /*@C 1921a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1922a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1923a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1924a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1925a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay Collective on MPI_Comm 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay Input Parameters: 1930a30f8f8cSSatish Balay + comm - MPI communicator 1931a30f8f8cSSatish Balay . bs - size of blockk 1932a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1933a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1934a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1935a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1936a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1937a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1938a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1939a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1940a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1941a30f8f8cSSatish Balay submatrix (same for all local rows) 1942a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19436d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19446d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19456d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1946a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1947a30f8f8cSSatish Balay submatrix (same for all local rows). 1948a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1949a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1950a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1951a30f8f8cSSatish Balay 1952a30f8f8cSSatish Balay Output Parameter: 1953a30f8f8cSSatish Balay . A - the matrix 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay Options Database Keys: 1956a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1957a30f8f8cSSatish Balay block calculations (much slower) 1958a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1959a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1960a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1961a30f8f8cSSatish Balay 1962175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1963ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1964175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1965175b88e8SBarry Smith 1966a30f8f8cSSatish Balay Notes: 1967d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19686d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1969d1be2dadSMatthew Knepley 1970a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1971a30f8f8cSSatish Balay (possibly both). 1972a30f8f8cSSatish Balay 1973a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1974a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1975a30f8f8cSSatish Balay 197649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197749a6f317SBarry Smith 1978a30f8f8cSSatish Balay Storage Information: 1979a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1980a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1981a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1982a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1983a30f8f8cSSatish Balay 1984a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1985a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1986a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1987a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1988a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1989a30f8f8cSSatish Balay 1990a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1991a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1992a30f8f8cSSatish Balay 1993a30f8f8cSSatish Balay .vb 1994a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1995a30f8f8cSSatish Balay ------------------- 1996a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1997a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1998a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1999a30f8f8cSSatish Balay ------------------- 2000a30f8f8cSSatish Balay .ve 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2003a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20046d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20056d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2006a30f8f8cSSatish Balay 20076d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20086d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2009a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2010a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2011a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2012a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2013a30f8f8cSSatish Balay matrices. 2014a30f8f8cSSatish Balay 2015a30f8f8cSSatish Balay Level: intermediate 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2018a30f8f8cSSatish Balay 2019a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2020a30f8f8cSSatish Balay @*/ 2021a30f8f8cSSatish Balay 2022be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2023a30f8f8cSSatish Balay { 20246849ba73SBarry Smith PetscErrorCode ierr; 20251302d50aSBarry Smith PetscMPIInt size; 2026a30f8f8cSSatish Balay 2027a30f8f8cSSatish Balay PetscFunctionBegin; 2028f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2029f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2030273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2031273d9f13SBarry Smith if (size > 1) { 2032b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2033b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2034273d9f13SBarry Smith } else { 2035273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2036273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2037273d9f13SBarry Smith } 2038a30f8f8cSSatish Balay PetscFunctionReturn(0); 2039a30f8f8cSSatish Balay } 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay 20424a2ae208SSatish Balay #undef __FUNCT__ 20434a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2045a30f8f8cSSatish Balay { 2046a30f8f8cSSatish Balay Mat mat; 2047a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2048dfbe8321SBarry Smith PetscErrorCode ierr; 2049d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2050387bc808SHong Zhang PetscScalar *array; 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay PetscFunctionBegin; 2053a30f8f8cSSatish Balay *newmat = 0; 20547adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2055d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20567adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20571d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 205826283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 205926283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2060e1b6402fSHong Zhang 206182327fa8SHong Zhang mat->factor = matin->factor; 2062273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20647fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20657fff6886SHong Zhang 2066b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2067a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2068a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2069a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2070a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2071a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2072a30f8f8cSSatish Balay 2073899cda47SBarry Smith 2074a30f8f8cSSatish Balay a->size = oldmat->size; 2075a30f8f8cSSatish Balay a->rank = oldmat->rank; 2076a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2077a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2078a30f8f8cSSatish Balay a->rowindices = 0; 2079a30f8f8cSSatish Balay a->rowvalues = 0; 2080a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2081a30f8f8cSSatish Balay a->barray = 0; 2082899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2083899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2084899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2085899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2086a30f8f8cSSatish Balay 2087a30f8f8cSSatish Balay /* hash table stuff */ 2088a30f8f8cSSatish Balay a->ht = 0; 2089a30f8f8cSSatish Balay a->hd = 0; 2090a30f8f8cSSatish Balay a->ht_size = 0; 2091a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2092a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2093a30f8f8cSSatish Balay a->ht_total_ct = 0; 2094a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2095a30f8f8cSSatish Balay 2096899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 20977adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 2098d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay if (oldmat->colmap) { 2100a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2101a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2102a30f8f8cSSatish Balay #else 21031302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21051302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2106a30f8f8cSSatish Balay #endif 2107a30f8f8cSSatish Balay } else a->colmap = 0; 2108387bc808SHong Zhang 2109a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21101302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 211152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21121302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2113a30f8f8cSSatish Balay } else a->garray = 0; 2114a30f8f8cSSatish Balay 2115a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 211652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2117a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 211982327fa8SHong Zhang 212082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2124387bc808SHong Zhang 2125387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21261ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2127387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2128387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21291ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21301ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2131387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21321ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 213652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2138387bc808SHong Zhang 2139387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2140387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2141387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214382327fa8SHong Zhang 2144a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21487adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2149a30f8f8cSSatish Balay *newmat = mat; 2150a30f8f8cSSatish Balay PetscFunctionReturn(0); 2151a30f8f8cSSatish Balay } 2152a30f8f8cSSatish Balay 2153a30f8f8cSSatish Balay #include "petscsys.h" 2154a30f8f8cSSatish Balay 21554a2ae208SSatish Balay #undef __FUNCT__ 21564a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2157a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2158a30f8f8cSSatish Balay { 2159a30f8f8cSSatish Balay Mat A; 21606849ba73SBarry Smith PetscErrorCode ierr; 216113f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216287828ca2SBarry Smith PetscScalar *vals,*buf; 2163a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2164a30f8f8cSSatish Balay MPI_Status status; 2165e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 216613f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21672fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21681302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21691302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21701302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217113f74950SBarry Smith int fd; 2172a30f8f8cSSatish Balay 2173a30f8f8cSSatish Balay PetscFunctionBegin; 217477925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21758c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21768c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay if (!rank) { 2181b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2183552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2184a30f8f8cSSatish Balay if (header[3] < 0) { 218529bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2186a30f8f8cSSatish Balay } 2187a30f8f8cSSatish Balay } 2188a30f8f8cSSatish Balay 2189a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2191a30f8f8cSSatish Balay 219229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2193a30f8f8cSSatish Balay 2194a30f8f8cSSatish Balay /* 2195a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2196a30f8f8cSSatish Balay divisible by the blocksize 2197a30f8f8cSSatish Balay */ 2198a30f8f8cSSatish Balay Mbs = M/bs; 2199a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2200a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2201a30f8f8cSSatish Balay else Mbs++; 2202a30f8f8cSSatish Balay if (extra_rows &&!rank) { 22031e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2204a30f8f8cSSatish Balay } 2205a30f8f8cSSatish Balay 2206a30f8f8cSSatish Balay /* determine ownership of all rows */ 2207a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2208a30f8f8cSSatish Balay m = mbs*bs; 2209*74ed9c26SBarry Smith ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 2210e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2211e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay rowners[0] = 0; 2213a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2214a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2215a30f8f8cSSatish Balay rstart = rowners[rank]; 2216a30f8f8cSSatish Balay rend = rowners[rank+1]; 2217a30f8f8cSSatish Balay 2218a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22192fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay if (!rank) { 22211302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2224a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2226a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay } else { 2229a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay } 2231a30f8f8cSSatish Balay 22320222edb1SHong Zhang if (!rank) { /* procs[0] */ 2233a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22341302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22351302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2236a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2237a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2238a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay } 2241a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2242a30f8f8cSSatish Balay 2243a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2244a30f8f8cSSatish Balay maxnz = 0; 2245a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2246a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2247a30f8f8cSSatish Balay } 22481302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay 2250a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2251a30f8f8cSSatish Balay nz = procsnz[0]; 22521302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2253a30f8f8cSSatish Balay mycols = ibuf; 2254a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2255a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2257a30f8f8cSSatish Balay 2258a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2259a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2260a30f8f8cSSatish Balay nz = procsnz[i]; 2261a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2262a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay } 2264a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2265a30f8f8cSSatish Balay if (size != 1) { 2266a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2267a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2269a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay } 2271a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22720222edb1SHong Zhang } else { /* procs[i], i>0 */ 2273a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2274a30f8f8cSSatish Balay nz = 0; 2275a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2276a30f8f8cSSatish Balay nz += locrowlens[i]; 2277a30f8f8cSSatish Balay } 22781302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay mycols = ibuf; 2280a30f8f8cSSatish Balay /* receive message of column indices*/ 2281a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2282a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 228329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2284a30f8f8cSSatish Balay } 2285a30f8f8cSSatish Balay 2286a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2287*74ed9c26SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 2288*74ed9c26SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 2289*74ed9c26SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2290*74ed9c26SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2291*74ed9c26SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2292*74ed9c26SBarry Smith rowcount = 0; 2293*74ed9c26SBarry Smith nzcount = 0; 2294a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2295a30f8f8cSSatish Balay dcount = 0; 2296a30f8f8cSSatish Balay odcount = 0; 2297a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2298a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2299a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23000222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2301a30f8f8cSSatish Balay if (!mask[tmp]) { 2302a30f8f8cSSatish Balay mask[tmp] = 1; 23030222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23040222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2305a30f8f8cSSatish Balay } 2306a30f8f8cSSatish Balay } 2307a30f8f8cSSatish Balay rowcount++; 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay 23100222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23110222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2314a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2315a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2316a30f8f8cSSatish Balay } 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay /* create our matrix */ 2319f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2320f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 232122191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232217fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 232322191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2324a30f8f8cSSatish Balay 2325a30f8f8cSSatish Balay if (!rank) { 232687828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2327a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2328a30f8f8cSSatish Balay nz = procsnz[0]; 2329a30f8f8cSSatish Balay vals = buf; 2330a30f8f8cSSatish Balay mycols = ibuf; 2331a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2332a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2333a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay /* insert into matrix */ 2336a30f8f8cSSatish Balay jj = rstart*bs; 2337a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23387e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2339a30f8f8cSSatish Balay mycols += locrowlens[i]; 2340a30f8f8cSSatish Balay vals += locrowlens[i]; 2341a30f8f8cSSatish Balay jj++; 2342a30f8f8cSSatish Balay } 23437e06b45fSHong Zhang 2344a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2345a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2346a30f8f8cSSatish Balay nz = procsnz[i]; 2347a30f8f8cSSatish Balay vals = buf; 2348a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23497adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2350a30f8f8cSSatish Balay } 2351a30f8f8cSSatish Balay /* the last proc */ 2352a30f8f8cSSatish Balay if (size != 1){ 2353a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2354a30f8f8cSSatish Balay vals = buf; 2355a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2356a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23577adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay } 2359a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23607e06b45fSHong Zhang 2361a30f8f8cSSatish Balay } else { 2362a30f8f8cSSatish Balay /* receive numeric values */ 236387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay 2365a30f8f8cSSatish Balay /* receive message of values*/ 2366a30f8f8cSSatish Balay vals = buf; 2367a30f8f8cSSatish Balay mycols = ibuf; 23687adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2369a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2371a30f8f8cSSatish Balay 2372a30f8f8cSSatish Balay /* insert into matrix */ 2373a30f8f8cSSatish Balay jj = rstart*bs; 2374a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2375a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2376a30f8f8cSSatish Balay mycols += locrowlens[i]; 2377a30f8f8cSSatish Balay vals += locrowlens[i]; 2378a30f8f8cSSatish Balay jj++; 2379a30f8f8cSSatish Balay } 2380a30f8f8cSSatish Balay } 23817e06b45fSHong Zhang 2382a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2385*74ed9c26SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 2386*74ed9c26SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 2387*74ed9c26SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 2388a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2389a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239022191285SKris Buschelman *newmat = A; 2391a30f8f8cSSatish Balay PetscFunctionReturn(0); 2392a30f8f8cSSatish Balay } 2393a30f8f8cSSatish Balay 23944a2ae208SSatish Balay #undef __FUNCT__ 23954a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2396dcf5cc72SBarry Smith /*XXXXX@ 2397a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2398a30f8f8cSSatish Balay 2399a30f8f8cSSatish Balay Input Parameters: 2400a30f8f8cSSatish Balay . mat - the matrix 2401a30f8f8cSSatish Balay . fact - factor 2402a30f8f8cSSatish Balay 2403a30f8f8cSSatish Balay Collective on Mat 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay Level: advanced 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay Notes: 2408a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2409a30f8f8cSSatish Balay 2410a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay .seealso: MatSetOption() 2413dcf5cc72SBarry Smith @XXXXX*/ 2414dcf5cc72SBarry Smith 241524d5174aSHong Zhang 24164a2ae208SSatish Balay #undef __FUNCT__ 2417985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2418985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 241924d5174aSHong Zhang { 242024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2421f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2422ca54ac64SHong Zhang PetscReal atmp; 242387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2424dfbe8321SBarry Smith PetscErrorCode ierr; 24251302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24261302d50aSBarry Smith PetscMPIInt rank,size; 24271302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 242887828ca2SBarry Smith PetscScalar *va; 24298a1c53f2SBarry Smith MatScalar *ba; 2430f4c0e9e4SHong Zhang MPI_Status stat; 243124d5174aSHong Zhang 243224d5174aSHong Zhang PetscFunctionBegin; 2433985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2434985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24351ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2436f4c0e9e4SHong Zhang 24377adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24387adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2439f4c0e9e4SHong Zhang 2440d0f46423SBarry Smith bs = A->rmap->bs; 2441f4c0e9e4SHong Zhang mbs = a->mbs; 2442f4c0e9e4SHong Zhang Mbs = a->Mbs; 2443f4c0e9e4SHong Zhang ba = b->a; 2444f4c0e9e4SHong Zhang bi = b->i; 2445f4c0e9e4SHong Zhang bj = b->j; 2446f4c0e9e4SHong Zhang 2447f4c0e9e4SHong Zhang /* find ownerships */ 2448d0f46423SBarry Smith rowners_bs = A->rmap->range; 2449f4c0e9e4SHong Zhang 2450f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245182502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2452ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2453f4c0e9e4SHong Zhang 2454f4c0e9e4SHong Zhang /* row_max for B */ 2455b8475685SHong Zhang if (rank != size-1){ 2456f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2457f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2458f4c0e9e4SHong Zhang brow = bs*i; 2459f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2460f4c0e9e4SHong Zhang bcol = bs*(*bj); 2461f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2462ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2464f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2465f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2466ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2467ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2468f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2469f4c0e9e4SHong Zhang } 2470f4c0e9e4SHong Zhang } 2471f4c0e9e4SHong Zhang bj++; 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang } 2474f4c0e9e4SHong Zhang 2475f4c0e9e4SHong Zhang /* send values to its owners */ 2476f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2477f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2478ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24797adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2480ca54ac64SHong Zhang } 2481f4c0e9e4SHong Zhang } 2482f4c0e9e4SHong Zhang 2483f4c0e9e4SHong Zhang /* receive values */ 2484ca54ac64SHong Zhang if (rank){ 2485f4c0e9e4SHong Zhang rvalues = work; 2486ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2487f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24887adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2489f4c0e9e4SHong Zhang /* process values */ 2490f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2491ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2492f4c0e9e4SHong Zhang } 2493f4c0e9e4SHong Zhang } 2494ca54ac64SHong Zhang } 2495f4c0e9e4SHong Zhang 24961ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2497ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249824d5174aSHong Zhang PetscFunctionReturn(0); 249924d5174aSHong Zhang } 25002798e883SHong Zhang 25012798e883SHong Zhang #undef __FUNCT__ 250241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 250341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25042798e883SHong Zhang { 25052798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2506dfbe8321SBarry Smith PetscErrorCode ierr; 2507d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2508fa22f6d0SBarry Smith PetscScalar *x,*b,*ptr,*from; 2509ffe4fb16SHong Zhang Vec bb1; 2510ffe4fb16SHong Zhang 2511ffe4fb16SHong Zhang PetscFunctionBegin; 251277431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2513b75cf396SBarry Smith if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2514ffe4fb16SHong Zhang 2515a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 251641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2517a2b30743SBarry Smith PetscFunctionReturn(0); 2518a2b30743SBarry Smith } 2519a2b30743SBarry Smith 2520ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2521ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 252241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2523ffe4fb16SHong Zhang its--; 2524ffe4fb16SHong Zhang } 2525ffe4fb16SHong Zhang 2526ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang while (its--){ 2528ffe4fb16SHong Zhang 2529ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2530ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang 2532ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25331ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25341ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25361ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang 2538efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang 2540ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25411ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25441ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2547fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2548ffe4fb16SHong Zhang 2549ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25501ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25511ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2552ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2555ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang /* local diagonal sweep */ 255841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2559ffe4fb16SHong Zhang } 2560ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2561fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2563fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2565fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2566fa22f6d0SBarry Smith Vec xx1; 2567fa22f6d0SBarry Smith PetscTruth hasop; 256820f1ed55SBarry Smith const PetscScalar *diag; 2569887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 257020f1ed55SBarry Smith PetscInt i,n; 2571fa22f6d0SBarry Smith 2572fa22f6d0SBarry Smith if (!mat->xx1) { 2573fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2574fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2575fa22f6d0SBarry Smith } 2576fa22f6d0SBarry Smith xx1 = mat->xx1; 2577fa22f6d0SBarry Smith bb1 = mat->bb1; 2578fa22f6d0SBarry Smith 257941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2580fa22f6d0SBarry Smith 2581fa22f6d0SBarry Smith if (!mat->diag) { 2582effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2583fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2584fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2585fa22f6d0SBarry Smith } 2586fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2587fa22f6d0SBarry Smith 2588fa22f6d0SBarry Smith if (hasop) { 2589fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2590887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259120f1ed55SBarry Smith } else { 259220f1ed55SBarry Smith /* 259320f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 259420f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2595887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259620f1ed55SBarry Smith */ 259720f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 259820f1ed55SBarry Smith ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 259920f1ed55SBarry Smith ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 260020f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 260120f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2602887ee2caSBarry Smith if (omega == 1.0) { 260320f1ed55SBarry Smith for (i=0; i<n; i++) { 260420f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 260520f1ed55SBarry Smith } 260620f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2607887ee2caSBarry Smith } else { 2608887ee2caSBarry Smith for (i=0; i<n; i++) { 2609887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2610887ee2caSBarry Smith } 2611887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2612887ee2caSBarry Smith } 261320f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 261420f1ed55SBarry Smith ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 261520f1ed55SBarry Smith ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 261620f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 261720f1ed55SBarry Smith } 2618fa22f6d0SBarry Smith 2619fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2620fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2621fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2622fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2623fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2624fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2625fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2626fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2627fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2628fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2629effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2630fa22f6d0SBarry Smith 2631fa22f6d0SBarry Smith /* local sweep */ 263241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2633fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2634ffe4fb16SHong Zhang } else { 2635ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2636ffe4fb16SHong Zhang } 2637ffe4fb16SHong Zhang PetscFunctionReturn(0); 2638ffe4fb16SHong Zhang } 2639ffe4fb16SHong Zhang 2640ffe4fb16SHong Zhang #undef __FUNCT__ 264141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 264241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2643ffe4fb16SHong Zhang { 2644ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2645dfbe8321SBarry Smith PetscErrorCode ierr; 26462798e883SHong Zhang Vec lvec1,bb1; 26472798e883SHong Zhang 26482798e883SHong Zhang PetscFunctionBegin; 264977431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2650b75cf396SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26512798e883SHong Zhang 2652c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26532798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 265441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26552798e883SHong Zhang its--; 26562798e883SHong Zhang } 26572798e883SHong Zhang 26582798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26592798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26602798e883SHong Zhang while (its--){ 2661ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26622798e883SHong Zhang 26632798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26642798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2665efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26662798e883SHong Zhang 2667ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26682798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2669ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26702798e883SHong Zhang 26712798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2672efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26732798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26742798e883SHong Zhang 2675ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26762798e883SHong Zhang 2677c14dc6b6SHong Zhang /* diagonal sweep */ 267841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26792798e883SHong Zhang } 26802798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26812798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2682c14dc6b6SHong Zhang } else { 2683c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2684c14dc6b6SHong Zhang } 26852798e883SHong Zhang PetscFunctionReturn(0); 26862798e883SHong Zhang } 26872798e883SHong Zhang 2688