xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 74ed9c26ab880fdcd1d3cdbb5b1e39d1b833147d)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
146d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
147d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
16971fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
2610880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++  = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3080880e062SHong Zhang         }
3090880e062SHong Zhang         else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3230880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
3260880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3300880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3360880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col =  in[j];
3380880e062SHong Zhang             }
3390880e062SHong Zhang           }
3400880e062SHong Zhang           else col = in[j];
341e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3420880e062SHong Zhang         }
3430880e062SHong Zhang       }
3440880e062SHong Zhang     } else {
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
36897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
376a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data --;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     } else {
39629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
397a30f8f8cSSatish Balay     }
398a30f8f8cSSatish Balay   }
399a30f8f8cSSatish Balay  PetscFunctionReturn(0);
400a30f8f8cSSatish Balay }
401a30f8f8cSSatish Balay 
4024a2ae208SSatish Balay #undef __FUNCT__
4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
405a30f8f8cSSatish Balay {
406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
407dfbe8321SBarry Smith   PetscErrorCode ierr;
408a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
409a30f8f8cSSatish Balay 
410a30f8f8cSSatish Balay   PetscFunctionBegin;
411a30f8f8cSSatish Balay   if (baij->size == 1) {
412a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
413a30f8f8cSSatish Balay   } else {
414a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
415f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
418a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4207adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
422a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4230b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4240b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4250b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4260b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
427899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
428d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4290b8dc8d2SHong Zhang       MatScalar    *v;
4300b8dc8d2SHong Zhang 
431*74ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
432d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4330b8dc8d2SHong Zhang       /* Amat */
4340b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4350b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4360b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4370b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4380b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4390b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4400b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4410b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4420b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4430b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4440b8dc8d2SHong Zhang               /* non-diagonal block */
4450b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4460b8dc8d2SHong Zhang             }
4470b8dc8d2SHong Zhang           }
4480b8dc8d2SHong Zhang         }
4490b8dc8d2SHong Zhang       }
4500b8dc8d2SHong Zhang       /* Bmat */
4510b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4520b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4530b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4540b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4550b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4560b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4570b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4580b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4590b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4600b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4610b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4620b8dc8d2SHong Zhang             }
4630b8dc8d2SHong Zhang           }
4640b8dc8d2SHong Zhang         }
4650b8dc8d2SHong Zhang       }
466d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4670b8dc8d2SHong Zhang       *norm = 0.0;
468d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4690b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4700b8dc8d2SHong Zhang       }
471*74ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
472a30f8f8cSSatish Balay     } else {
47329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
474a30f8f8cSSatish Balay     }
475a30f8f8cSSatish Balay   }
476a30f8f8cSSatish Balay   PetscFunctionReturn(0);
477a30f8f8cSSatish Balay }
478a30f8f8cSSatish Balay 
4794a2ae208SSatish Balay #undef __FUNCT__
4804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
481dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
482a30f8f8cSSatish Balay {
483a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
484dfbe8321SBarry Smith   PetscErrorCode ierr;
4851302d50aSBarry Smith   PetscInt       nstash,reallocs;
486a30f8f8cSSatish Balay   InsertMode     addv;
487a30f8f8cSSatish Balay 
488a30f8f8cSSatish Balay   PetscFunctionBegin;
489a30f8f8cSSatish Balay   if (baij->donotstash) {
490a30f8f8cSSatish Balay     PetscFunctionReturn(0);
491a30f8f8cSSatish Balay   }
492a30f8f8cSSatish Balay 
493a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4947adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
495a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
49629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
497a30f8f8cSSatish Balay   }
498a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
499a30f8f8cSSatish Balay 
500d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5011e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
502a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5031e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
504a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5051e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
506a30f8f8cSSatish Balay   PetscFunctionReturn(0);
507a30f8f8cSSatish Balay }
508a30f8f8cSSatish Balay 
5094a2ae208SSatish Balay #undef __FUNCT__
5104a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
511dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
512a30f8f8cSSatish Balay {
513a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
514a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5156849ba73SBarry Smith   PetscErrorCode ierr;
51613f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
517e44c0bd4SBarry Smith   PetscInt       *row,*col;
518e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
51913f74950SBarry Smith   PetscMPIInt    n;
520a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
521a30f8f8cSSatish Balay   MatScalar      *val;
522a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
523a30f8f8cSSatish Balay 
52491c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
525a30f8f8cSSatish Balay   PetscFunctionBegin;
526a30f8f8cSSatish Balay 
527a30f8f8cSSatish Balay   if (!baij->donotstash) {
528a30f8f8cSSatish Balay     while (1) {
529a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
530a30f8f8cSSatish Balay       if (!flg) break;
531a30f8f8cSSatish Balay 
532a30f8f8cSSatish Balay       for (i=0; i<n;) {
533a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
534a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
535a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
536a30f8f8cSSatish Balay         else       ncols = n-i;
537a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
538dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
539a30f8f8cSSatish Balay         i = j;
540a30f8f8cSSatish Balay       }
541a30f8f8cSSatish Balay     }
542a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
543a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
544a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
545a30f8f8cSSatish Balay        restore the original flags */
546a30f8f8cSSatish Balay     r1 = baij->roworiented;
547a30f8f8cSSatish Balay     r2 = a->roworiented;
54891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
549a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
550a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
552a30f8f8cSSatish Balay     while (1) {
553a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
554a30f8f8cSSatish Balay       if (!flg) break;
555a30f8f8cSSatish Balay 
556a30f8f8cSSatish Balay       for (i=0; i<n;) {
557a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
558a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
559a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
560a30f8f8cSSatish Balay         else       ncols = n-i;
561dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
562a30f8f8cSSatish Balay         i = j;
563a30f8f8cSSatish Balay       }
564a30f8f8cSSatish Balay     }
565a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
566a30f8f8cSSatish Balay     baij->roworiented = r1;
567a30f8f8cSSatish Balay     a->roworiented    = r2;
56891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay 
571a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
572a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
575a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
576a30f8f8cSSatish Balay   /*
577a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
578a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
579a30f8f8cSSatish Balay   */
580a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5817adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
582a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
583c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
584a30f8f8cSSatish Balay     }
585a30f8f8cSSatish Balay   }
586a30f8f8cSSatish Balay 
587a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58840781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
589a30f8f8cSSatish Balay   }
59091c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
591a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
592a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay 
594*74ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
595a30f8f8cSSatish Balay   baij->rowvalues = 0;
5965222a1afSHong Zhang 
597a30f8f8cSSatish Balay   PetscFunctionReturn(0);
598a30f8f8cSSatish Balay }
599a30f8f8cSSatish Balay 
600dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6014a2ae208SSatish Balay #undef __FUNCT__
6024a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6036849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
604a30f8f8cSSatish Balay {
605a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
606dfbe8321SBarry Smith   PetscErrorCode    ierr;
607d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6081302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
60932077d6dSBarry Smith   PetscTruth        iascii,isdraw;
610b0a32e0cSBarry Smith   PetscViewer       sviewer;
611f3ef73ceSBarry Smith   PetscViewerFormat format;
612a30f8f8cSSatish Balay 
613a30f8f8cSSatish Balay   PetscFunctionBegin;
61432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
615fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61632077d6dSBarry Smith   if (iascii) {
617b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
618456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
619a30f8f8cSSatish Balay       MatInfo info;
6207adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
621a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
623d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
624d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
627a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
629b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63007d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
631a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
632a30f8f8cSSatish Balay       PetscFunctionReturn(0);
633fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       PetscFunctionReturn(0);
636c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
637c1490034SHong Zhang       PetscFunctionReturn(0);
638a30f8f8cSSatish Balay     }
639a30f8f8cSSatish Balay   }
640a30f8f8cSSatish Balay 
641a30f8f8cSSatish Balay   if (isdraw) {
642b0a32e0cSBarry Smith     PetscDraw  draw;
643a30f8f8cSSatish Balay     PetscTruth isnull;
644b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
645b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
646a30f8f8cSSatish Balay   }
647a30f8f8cSSatish Balay 
648a30f8f8cSSatish Balay   if (size == 1) {
6497adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
650a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
651a30f8f8cSSatish Balay   } else {
652a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
653a30f8f8cSSatish Balay     Mat          A;
65465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
656d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
657a30f8f8cSSatish Balay     MatScalar    *a;
658a30f8f8cSSatish Balay 
659f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6607adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
661a30f8f8cSSatish Balay     if (!rank) {
662f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
663a30f8f8cSSatish Balay     } else {
664f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     }
666f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
667d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay     /* copy over the A part */
67165d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
672a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6731302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
676e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
677a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
678a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
679e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
680a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
681dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
682a30f8f8cSSatish Balay           col++; a += bs;
683a30f8f8cSSatish Balay         }
684a30f8f8cSSatish Balay       }
685a30f8f8cSSatish Balay     }
686a30f8f8cSSatish Balay     /* copy over the B part */
68765d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68865d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
689a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
690e9f7bc9eSHong Zhang 
691e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
692a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
693a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
694a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
695a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
696799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
697a30f8f8cSSatish Balay           col++; a += bs;
698a30f8f8cSSatish Balay         }
699a30f8f8cSSatish Balay       }
700a30f8f8cSSatish Balay     }
701a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
702a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     /*
705a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
706b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
707a30f8f8cSSatish Balay     */
708b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
70965d70643SHong Zhang     if (!rank) {
7107adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
711a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
712a30f8f8cSSatish Balay     }
713b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
715a30f8f8cSSatish Balay   }
716a30f8f8cSSatish Balay   PetscFunctionReturn(0);
717a30f8f8cSSatish Balay }
718a30f8f8cSSatish Balay 
7194a2ae208SSatish Balay #undef __FUNCT__
7204a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
721dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
722a30f8f8cSSatish Balay {
723dfbe8321SBarry Smith   PetscErrorCode ierr;
72432077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
725a30f8f8cSSatish Balay 
726a30f8f8cSSatish Balay   PetscFunctionBegin;
72732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
728fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
729b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
730fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73132077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
732a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
733a30f8f8cSSatish Balay   } else {
7341302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
735a30f8f8cSSatish Balay   }
736a30f8f8cSSatish Balay   PetscFunctionReturn(0);
737a30f8f8cSSatish Balay }
738a30f8f8cSSatish Balay 
7394a2ae208SSatish Balay #undef __FUNCT__
7404a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
741dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
742a30f8f8cSSatish Balay {
743a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
744dfbe8321SBarry Smith   PetscErrorCode ierr;
745a30f8f8cSSatish Balay 
746a30f8f8cSSatish Balay   PetscFunctionBegin;
747a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
748d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
749a30f8f8cSSatish Balay #endif
750a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
754a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7559c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
756a30f8f8cSSatish Balay #else
75705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
758a30f8f8cSSatish Balay #endif
75905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
761a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76240781036SHong Zhang   if (baij->slvec0) {
76340781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76540781036SHong Zhang   }
76640781036SHong Zhang   if (baij->slvec1) {
76740781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77040781036SHong Zhang   }
77140781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77205b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
775fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
776fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
77865460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
77905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
780a30f8f8cSSatish Balay #endif
78159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
783899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
784a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
785901853e0SKris Buschelman 
786dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
787901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
791a30f8f8cSSatish Balay   PetscFunctionReturn(0);
792a30f8f8cSSatish Balay }
793a30f8f8cSSatish Balay 
7944a2ae208SSatish Balay #undef __FUNCT__
795547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
796547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
797547795f9SHong Zhang {
798547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
799547795f9SHong Zhang   PetscErrorCode ierr;
800547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
801547795f9SHong Zhang   PetscScalar    *x,*from;
802547795f9SHong Zhang 
803547795f9SHong Zhang   PetscFunctionBegin;
804547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
805547795f9SHong Zhang   if (nt != A->cmap->n) {
806547795f9SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
807547795f9SHong Zhang   }
808547795f9SHong Zhang 
809547795f9SHong Zhang   /* diagonal part */
810547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
811547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
812547795f9SHong Zhang 
813547795f9SHong Zhang   /* subdiagonal part */
814547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
815547795f9SHong Zhang 
816547795f9SHong Zhang   /* copy x into the vec slvec0 */
817547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
818547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
821547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
823547795f9SHong Zhang 
824547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826547795f9SHong Zhang   /* supperdiagonal part */
827547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
828547795f9SHong Zhang   PetscFunctionReturn(0);
829547795f9SHong Zhang }
830547795f9SHong Zhang 
831547795f9SHong Zhang #undef __FUNCT__
832a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
833dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
834a9d4b620SHong Zhang {
835a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
836dfbe8321SBarry Smith   PetscErrorCode ierr;
837d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
838fa22f6d0SBarry Smith   PetscScalar    *x,*from;
839a9d4b620SHong Zhang 
840a9d4b620SHong Zhang   PetscFunctionBegin;
841a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
842d0f46423SBarry Smith   if (nt != A->cmap->n) {
843a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a9d4b620SHong Zhang   }
845a9d4b620SHong Zhang 
846a9d4b620SHong Zhang   /* diagonal part */
847a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
848fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
849a9d4b620SHong Zhang 
850a9d4b620SHong Zhang   /* subdiagonal part */
851a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
852fc165ae2SBarry Smith 
853a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8541ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8551ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
856a9d4b620SHong Zhang 
857fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
858fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8591ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
860fc165ae2SBarry Smith 
861fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
862ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
863a9d4b620SHong Zhang   /* supperdiagonal part */
864a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
865a9d4b620SHong Zhang   PetscFunctionReturn(0);
866a9d4b620SHong Zhang }
867a9d4b620SHong Zhang 
868a9d4b620SHong Zhang #undef __FUNCT__
86940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
870dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
871a30f8f8cSSatish Balay {
872a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
873dfbe8321SBarry Smith   PetscErrorCode ierr;
8741302d50aSBarry Smith   PetscInt       nt;
875a30f8f8cSSatish Balay 
876a30f8f8cSSatish Balay   PetscFunctionBegin;
877a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
878d0f46423SBarry Smith   if (nt != A->cmap->n) {
87929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
880a30f8f8cSSatish Balay   }
881a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
882d0f46423SBarry Smith   if (nt != A->rmap->N) {
88329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
884a30f8f8cSSatish Balay   }
88565d70643SHong Zhang 
886ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
887b941877fSHong Zhang   /* do diagonal part */
888b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
889b941877fSHong Zhang   /* do supperdiagonal part */
890ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
891b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
892b941877fSHong Zhang   /* do subdiagonal part */
893b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
894ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
895ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89665d70643SHong Zhang 
897a30f8f8cSSatish Balay   PetscFunctionReturn(0);
898a30f8f8cSSatish Balay }
899a30f8f8cSSatish Balay 
9004a2ae208SSatish Balay #undef __FUNCT__
9014a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
902dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
903a30f8f8cSSatish Balay {
904de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
905dfbe8321SBarry Smith   PetscErrorCode ierr;
906d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
907a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
908a9d4b620SHong Zhang 
909a9d4b620SHong Zhang   PetscFunctionBegin;
910a9d4b620SHong Zhang   /*
9117adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9127adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
913a9d4b620SHong Zhang   */
914a9d4b620SHong Zhang   /* diagonal part */
915a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9162dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
917a9d4b620SHong Zhang 
918a9d4b620SHong Zhang   /* subdiagonal part */
919a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
920a9d4b620SHong Zhang 
921a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9221ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9231ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
924a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9251ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
926a9d4b620SHong Zhang 
927ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9281ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
929ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
930a9d4b620SHong Zhang 
931a9d4b620SHong Zhang   /* supperdiagonal part */
932a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   PetscFunctionReturn(0);
935a9d4b620SHong Zhang }
936a9d4b620SHong Zhang 
937a9d4b620SHong Zhang #undef __FUNCT__
938a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
939dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
940a9d4b620SHong Zhang {
941a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
942dfbe8321SBarry Smith   PetscErrorCode ierr;
943a30f8f8cSSatish Balay 
944a30f8f8cSSatish Balay   PetscFunctionBegin;
945ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
946b941877fSHong Zhang   /* do diagonal part */
947b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
948b941877fSHong Zhang   /* do supperdiagonal part */
949ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
950de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
951de8b6608SHong Zhang 
952b941877fSHong Zhang   /* do subdiagonal part */
953a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
954ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
955ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
956aa482183SHong Zhang 
957a30f8f8cSSatish Balay   PetscFunctionReturn(0);
958a30f8f8cSSatish Balay }
959a30f8f8cSSatish Balay 
960a30f8f8cSSatish Balay /*
961a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
962a30f8f8cSSatish Balay    diagonal block
963a30f8f8cSSatish Balay */
9644a2ae208SSatish Balay #undef __FUNCT__
9654a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
966dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
967a30f8f8cSSatish Balay {
968a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
969dfbe8321SBarry Smith   PetscErrorCode ierr;
970a30f8f8cSSatish Balay 
971a30f8f8cSSatish Balay   PetscFunctionBegin;
972d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
973a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
974a30f8f8cSSatish Balay   PetscFunctionReturn(0);
975a30f8f8cSSatish Balay }
976a30f8f8cSSatish Balay 
9774a2ae208SSatish Balay #undef __FUNCT__
9784a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
979f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
980a30f8f8cSSatish Balay {
981a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
982dfbe8321SBarry Smith   PetscErrorCode ierr;
983a30f8f8cSSatish Balay 
984a30f8f8cSSatish Balay   PetscFunctionBegin;
985f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
986f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
987a30f8f8cSSatish Balay   PetscFunctionReturn(0);
988a30f8f8cSSatish Balay }
989a30f8f8cSSatish Balay 
9904a2ae208SSatish Balay #undef __FUNCT__
9914a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9921302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
993a30f8f8cSSatish Balay {
994d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
995d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
996d0d4cfc2SHong Zhang   PetscErrorCode ierr;
997d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
998d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
999899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1000d0d4cfc2SHong Zhang 
1001a30f8f8cSSatish Balay   PetscFunctionBegin;
10024eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1003d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1004d0d4cfc2SHong Zhang 
1005d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1006d0d4cfc2SHong Zhang     /*
1007d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1008d0d4cfc2SHong Zhang     */
1009d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1010d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1011d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1012d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1013d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1014d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1015d0d4cfc2SHong Zhang     }
1016*74ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1017d0d4cfc2SHong Zhang   }
1018d0d4cfc2SHong Zhang 
1019d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1020d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1021d0d4cfc2SHong Zhang 
1022d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1023d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1024d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1025d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1026d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1027d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1028d0d4cfc2SHong Zhang 
1029d0d4cfc2SHong Zhang   cmap  = mat->garray;
1030d0d4cfc2SHong Zhang   if (v  || idx) {
1031d0d4cfc2SHong Zhang     if (nztot) {
1032d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1033d0d4cfc2SHong Zhang       PetscInt imark = -1;
1034d0d4cfc2SHong Zhang       if (v) {
1035d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1036d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1037d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1038d0d4cfc2SHong Zhang           else break;
1039d0d4cfc2SHong Zhang         }
1040d0d4cfc2SHong Zhang         imark = i;
1041d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1042d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1043d0d4cfc2SHong Zhang       }
1044d0d4cfc2SHong Zhang       if (idx) {
1045d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1046d0d4cfc2SHong Zhang         if (imark > -1) {
1047d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1048d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1049d0d4cfc2SHong Zhang           }
1050d0d4cfc2SHong Zhang         } else {
1051d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1052d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1053d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1054d0d4cfc2SHong Zhang             else break;
1055d0d4cfc2SHong Zhang           }
1056d0d4cfc2SHong Zhang           imark = i;
1057d0d4cfc2SHong Zhang         }
1058d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1059d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1060d0d4cfc2SHong Zhang       }
1061d0d4cfc2SHong Zhang     } else {
1062d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1063d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1064d0d4cfc2SHong Zhang     }
1065d0d4cfc2SHong Zhang   }
1066d0d4cfc2SHong Zhang   *nz = nztot;
1067d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1068d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1069a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1070a30f8f8cSSatish Balay }
1071a30f8f8cSSatish Balay 
10724a2ae208SSatish Balay #undef __FUNCT__
10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1075a30f8f8cSSatish Balay {
1076a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1077a30f8f8cSSatish Balay 
1078a30f8f8cSSatish Balay   PetscFunctionBegin;
1079abc0a331SBarry Smith   if (!baij->getrowactive) {
1080abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1081a30f8f8cSSatish Balay   }
1082a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1083a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1084a30f8f8cSSatish Balay }
1085a30f8f8cSSatish Balay 
10864a2ae208SSatish Balay #undef __FUNCT__
1087d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1088d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1089d0d4cfc2SHong Zhang {
1090d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1091d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1092d0d4cfc2SHong Zhang 
1093d0d4cfc2SHong Zhang   PetscFunctionBegin;
1094d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1095d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1096d0d4cfc2SHong Zhang }
1097d0d4cfc2SHong Zhang #undef __FUNCT__
1098d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1099d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1100d0d4cfc2SHong Zhang {
1101d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1102d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1103d0d4cfc2SHong Zhang 
1104d0d4cfc2SHong Zhang   PetscFunctionBegin;
1105d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1106d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1107d0d4cfc2SHong Zhang }
1108d0d4cfc2SHong Zhang 
1109d0d4cfc2SHong Zhang #undef __FUNCT__
111099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
111199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111299cafbc1SBarry Smith {
111399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111499cafbc1SBarry Smith   PetscErrorCode ierr;
111599cafbc1SBarry Smith 
111699cafbc1SBarry Smith   PetscFunctionBegin;
111799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111999cafbc1SBarry Smith   PetscFunctionReturn(0);
112099cafbc1SBarry Smith }
112199cafbc1SBarry Smith 
112299cafbc1SBarry Smith #undef __FUNCT__
112399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112599cafbc1SBarry Smith {
112699cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112799cafbc1SBarry Smith   PetscErrorCode ierr;
112899cafbc1SBarry Smith 
112999cafbc1SBarry Smith   PetscFunctionBegin;
113099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
113199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113299cafbc1SBarry Smith   PetscFunctionReturn(0);
113399cafbc1SBarry Smith }
113499cafbc1SBarry Smith 
113599cafbc1SBarry Smith #undef __FUNCT__
11364a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1137dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1138a30f8f8cSSatish Balay {
1139a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1140dfbe8321SBarry Smith   PetscErrorCode ierr;
1141a30f8f8cSSatish Balay 
1142a30f8f8cSSatish Balay   PetscFunctionBegin;
1143a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1144a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1145a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1146a30f8f8cSSatish Balay }
1147a30f8f8cSSatish Balay 
11484a2ae208SSatish Balay #undef __FUNCT__
11494a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1150dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1151a30f8f8cSSatish Balay {
1152a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1153a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1154dfbe8321SBarry Smith   PetscErrorCode ierr;
1155a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1156a30f8f8cSSatish Balay 
1157a30f8f8cSSatish Balay   PetscFunctionBegin;
1158d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1159a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1160a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1161a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1162a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1163a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1164a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1165a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1166a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1167a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1168a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1169a30f8f8cSSatish Balay     info->memory       = isend[3];
1170a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1171a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11727adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1173a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1174a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1175a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1176a30f8f8cSSatish Balay     info->memory       = irecv[3];
1177a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1178a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11797adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1180a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1181a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1182a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1183a30f8f8cSSatish Balay     info->memory       = irecv[3];
1184a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1185a30f8f8cSSatish Balay   } else {
118677431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1187a30f8f8cSSatish Balay   }
1188a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1189a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1190a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1191a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1192a30f8f8cSSatish Balay }
1193a30f8f8cSSatish Balay 
11944a2ae208SSatish Balay #undef __FUNCT__
11954a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11964e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1197a30f8f8cSSatish Balay {
1198a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1199d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1200dfbe8321SBarry Smith   PetscErrorCode ierr;
1201a30f8f8cSSatish Balay 
1202a30f8f8cSSatish Balay   PetscFunctionBegin;
1203e98b92d7SKris Buschelman   switch (op) {
1204512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1205e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
120628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1207a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1208e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12094e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12104e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1211e98b92d7SKris Buschelman     break;
1212e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12134e0d8c25SBarry Smith     a->roworiented = flg;
12144e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12154e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1216e98b92d7SKris Buschelman     break;
12174e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1218290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1219e98b92d7SKris Buschelman     break;
1220e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12214e0d8c25SBarry Smith     a->donotstash = flg;
1222e98b92d7SKris Buschelman     break;
1223e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12244e0d8c25SBarry Smith     a->ht_flag = flg;
1225e98b92d7SKris Buschelman     break;
12269a4540c5SBarry Smith   case MAT_HERMITIAN:
1227547795f9SHong Zhang     if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1228eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1229547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1230eeffb40dSHong Zhang     break;
123177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1232eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1233eeffb40dSHong Zhang     break;
123477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1235eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1236eeffb40dSHong Zhang     break;
12379a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12384e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1239290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124077e54ba9SKris Buschelman     break;
1241d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12424e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1243d0d4cfc2SHong Zhang     break;
1244d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12454e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1246d0d4cfc2SHong Zhang     break;
1247d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12484e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1249d0d4cfc2SHong Zhang     break;
1250e98b92d7SKris Buschelman   default:
1251ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1252a30f8f8cSSatish Balay   }
1253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1254a30f8f8cSSatish Balay }
1255a30f8f8cSSatish Balay 
12564a2ae208SSatish Balay #undef __FUNCT__
12578115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1258fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1259a30f8f8cSSatish Balay {
1260dfbe8321SBarry Smith   PetscErrorCode ierr;
1261a30f8f8cSSatish Balay   PetscFunctionBegin;
1262815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1263999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1264fc4dec0aSBarry Smith   }
12658115998fSBarry Smith   PetscFunctionReturn(0);
1266a30f8f8cSSatish Balay }
1267a30f8f8cSSatish Balay 
12684a2ae208SSatish Balay #undef __FUNCT__
12694a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1270dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1271a30f8f8cSSatish Balay {
1272a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1273a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1274dfbe8321SBarry Smith   PetscErrorCode ierr;
12755e90f9d9SHong Zhang   PetscInt       nv,m,n;
1276b3bf805bSHong Zhang   PetscTruth     flg;
1277a30f8f8cSSatish Balay 
1278a30f8f8cSSatish Balay   PetscFunctionBegin;
1279a30f8f8cSSatish Balay   if (ll != rr){
1280b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1281b3bf805bSHong Zhang     if (!flg)
128229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1283a30f8f8cSSatish Balay   }
1284b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1285b3bf805bSHong Zhang 
12865e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12875e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1288b3bf805bSHong Zhang 
12895e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12905e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12915e90f9d9SHong Zhang 
1292ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12935e90f9d9SHong Zhang 
12945e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1295a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12965e90f9d9SHong Zhang 
12975e90f9d9SHong Zhang   /* scale the diagonal part */
1298a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1299a30f8f8cSSatish Balay 
13005e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1301ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1302a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1304a30f8f8cSSatish Balay }
1305a30f8f8cSSatish Balay 
13064a2ae208SSatish Balay #undef __FUNCT__
13074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1308dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1309a30f8f8cSSatish Balay {
1310f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1311dfbe8321SBarry Smith   PetscErrorCode ierr;
1312a30f8f8cSSatish Balay 
1313a30f8f8cSSatish Balay   PetscFunctionBegin;
1314a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1315a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1316a30f8f8cSSatish Balay }
1317a30f8f8cSSatish Balay 
13186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1319a30f8f8cSSatish Balay 
13204a2ae208SSatish Balay #undef __FUNCT__
13214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1322dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1323a30f8f8cSSatish Balay {
1324a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1325a30f8f8cSSatish Balay   Mat            a,b,c,d;
1326a30f8f8cSSatish Balay   PetscTruth     flg;
1327dfbe8321SBarry Smith   PetscErrorCode ierr;
1328a30f8f8cSSatish Balay 
1329a30f8f8cSSatish Balay   PetscFunctionBegin;
1330a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1331a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1332a30f8f8cSSatish Balay 
1333a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1334abc0a331SBarry Smith   if (flg) {
1335a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1336a30f8f8cSSatish Balay   }
13377adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1339a30f8f8cSSatish Balay }
1340a30f8f8cSSatish Balay 
13414a2ae208SSatish Balay #undef __FUNCT__
13423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13433c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13443c896bc6SHong Zhang {
13453c896bc6SHong Zhang   PetscErrorCode ierr;
13463c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13473c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13483c896bc6SHong Zhang 
13493c896bc6SHong Zhang   PetscFunctionBegin;
13503c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13513c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1352d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13533c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1354d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13553c896bc6SHong Zhang   } else {
13563c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13573c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13583c896bc6SHong Zhang   }
13593c896bc6SHong Zhang   PetscFunctionReturn(0);
13603c896bc6SHong Zhang }
13613c896bc6SHong Zhang 
13623c896bc6SHong Zhang #undef __FUNCT__
13634a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1364dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1365273d9f13SBarry Smith {
1366dfbe8321SBarry Smith   PetscErrorCode ierr;
1367273d9f13SBarry Smith 
1368273d9f13SBarry Smith   PetscFunctionBegin;
1369db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1370273d9f13SBarry Smith   PetscFunctionReturn(0);
1371273d9f13SBarry Smith }
1372a5e6ed63SBarry Smith 
13734fe895cdSHong Zhang #include "petscblaslapack.h"
13744fe895cdSHong Zhang #undef __FUNCT__
13754fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13764fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13774fe895cdSHong Zhang {
13784fe895cdSHong Zhang   PetscErrorCode ierr;
13794fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13804fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13814fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13824fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13834fe895cdSHong Zhang 
13844fe895cdSHong Zhang   PetscFunctionBegin;
13854fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13864fe895cdSHong Zhang     PetscScalar alpha = a;
13874fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13884fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13890805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13904fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13914fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13924fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13930805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13944fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13954fe895cdSHong Zhang   } else {
1396d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13974fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1398d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13994fe895cdSHong Zhang   }
14004fe895cdSHong Zhang   PetscFunctionReturn(0);
14014fe895cdSHong Zhang }
14024fe895cdSHong Zhang 
1403a5e6ed63SBarry Smith #undef __FUNCT__
14046363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14056363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14066363de48SJed Brown {
14076363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14086363de48SJed Brown   PetscInt        rbs,cbs;
14096363de48SJed Brown   PetscErrorCode  ierr;
14106363de48SJed Brown 
14116363de48SJed Brown   PetscFunctionBegin;
14126363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14136363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14146363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14156363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
14166363de48SJed Brown   if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
14176363de48SJed Brown   if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14186363de48SJed Brown   PetscFunctionReturn(0);
14196363de48SJed Brown }
14206363de48SJed Brown 
14216363de48SJed Brown #undef __FUNCT__
1422a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14231302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1424a5e6ed63SBarry Smith {
14256849ba73SBarry Smith   PetscErrorCode ierr;
14261302d50aSBarry Smith   PetscInt       i;
1427a5e6ed63SBarry Smith   PetscTruth     flg;
1428a5e6ed63SBarry Smith 
14296849ba73SBarry Smith   PetscFunctionBegin;
1430a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1431a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1432a5e6ed63SBarry Smith     if (!flg) {
14331302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1434a5e6ed63SBarry Smith     }
1435a5e6ed63SBarry Smith   }
1436a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1437a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1438a5e6ed63SBarry Smith }
1439a5e6ed63SBarry Smith 
1440a5e6ed63SBarry Smith 
1441a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1442a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1443a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1444a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1446a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1448431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1449431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1450a30f8f8cSSatish Balay        0,
1451a30f8f8cSSatish Balay        0,
1452a30f8f8cSSatish Balay        0,
145397304618SKris Buschelman /*10*/ 0,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
145641f059aeSBarry Smith        MatSOR_MPISBAIJ,
1457a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
145897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1459a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1460a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1467d519adbfSMatthew Knepley /*24*/ 0,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470a30f8f8cSSatish Balay        0,
1471a30f8f8cSSatish Balay        0,
1472d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1473b5df2d14SHong Zhang        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481a30f8f8cSSatish Balay        0,
1482d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1483a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1484d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1485a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14863c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1487d519adbfSMatthew Knepley /*44*/ 0,
1488a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        0,
14926363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497d519adbfSMatthew Knepley /*54*/ 0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1502d519adbfSMatthew Knepley /*59*/ 0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505357abbc8SBarry Smith        0,
150624d5174aSHong Zhang        0,
1507d519adbfSMatthew Knepley /*64*/ 0,
150824d5174aSHong Zhang        0,
150924d5174aSHong Zhang        0,
151024d5174aSHong Zhang        0,
151124d5174aSHong Zhang        0,
1512d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151324d5174aSHong Zhang        0,
151497304618SKris Buschelman        0,
151597304618SKris Buschelman        0,
151697304618SKris Buschelman        0,
1517d519adbfSMatthew Knepley /*74*/ 0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman        0,
1522d519adbfSMatthew Knepley /*79*/ 0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
1526865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1527d519adbfSMatthew Knepley /*84*/ 0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman        0,
1532d519adbfSMatthew Knepley /*89*/ 0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman        0,
1537d519adbfSMatthew Knepley /*94*/ 0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
154099cafbc1SBarry Smith        0,
154199cafbc1SBarry Smith        0,
1542d519adbfSMatthew Knepley /*99*/ 0,
154399cafbc1SBarry Smith        0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
154699cafbc1SBarry Smith        0,
1547d519adbfSMatthew Knepley /*104*/0,
154899cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1549d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1550d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1551d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
155299cafbc1SBarry Smith };
1553a30f8f8cSSatish Balay 
1554a30f8f8cSSatish Balay 
1555a30f8f8cSSatish Balay EXTERN_C_BEGIN
15564a2ae208SSatish Balay #undef __FUNCT__
15574a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1558be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1559a30f8f8cSSatish Balay {
1560a30f8f8cSSatish Balay   PetscFunctionBegin;
1561a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1562a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1563a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1564a30f8f8cSSatish Balay }
1565a30f8f8cSSatish Balay EXTERN_C_END
1566a30f8f8cSSatish Balay 
1567273d9f13SBarry Smith EXTERN_C_BEGIN
15684a2ae208SSatish Balay #undef __FUNCT__
1569a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1570be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1571a23d5eceSKris Buschelman {
1572a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1573dfbe8321SBarry Smith   PetscErrorCode ierr;
1574db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1575a23d5eceSKris Buschelman 
1576a23d5eceSKris Buschelman   PetscFunctionBegin;
1577db4efbfdSBarry Smith   if (bs < 0){
15787adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1579db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15808c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1581db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1582db4efbfdSBarry Smith   }
1583db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1584db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1585db4efbfdSBarry Smith   }
1586db4efbfdSBarry Smith   bs = newbs;
1587a23d5eceSKris Buschelman 
1588a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1589a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
159077431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
159177431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1592899cda47SBarry Smith 
1593d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
159426283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159526283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1596899cda47SBarry Smith 
1597a23d5eceSKris Buschelman   if (d_nnz) {
1598d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
159977431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1600a23d5eceSKris Buschelman     }
1601a23d5eceSKris Buschelman   }
1602a23d5eceSKris Buschelman   if (o_nnz) {
1603d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160477431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1605a23d5eceSKris Buschelman     }
1606a23d5eceSKris Buschelman   }
1607a23d5eceSKris Buschelman 
1608a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1609d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1610d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1611d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1612d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1613a23d5eceSKris Buschelman   }
1614a23d5eceSKris Buschelman 
1615d0f46423SBarry Smith   B->rmap->bs  = bs;
1616a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1617a23d5eceSKris Buschelman   b->mbs = mbs;
1618a23d5eceSKris Buschelman   b->nbs = mbs;
1619a23d5eceSKris Buschelman   b->Mbs = Mbs;
1620a23d5eceSKris Buschelman   b->Nbs = Mbs;
1621a23d5eceSKris Buschelman 
1622a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1623d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1624a23d5eceSKris Buschelman   }
1625d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1626d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1627a23d5eceSKris Buschelman 
1628d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1629d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1630a23d5eceSKris Buschelman 
1631526dfc15SBarry Smith   if (!B->preallocated) {
1632f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1633d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16349c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163552e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1636f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1637d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16384aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
163952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1640a23d5eceSKris Buschelman     /* build cache for off array entries formed */
16417adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1642526dfc15SBarry Smith   }
1643a23d5eceSKris Buschelman 
1644526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1645526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1646526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1647a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1648a23d5eceSKris Buschelman }
1649a23d5eceSKris Buschelman EXTERN_C_END
1650a23d5eceSKris Buschelman 
16515c9eb25fSBarry Smith EXTERN_C_BEGIN
1652611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1653611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1654611f576cSBarry Smith #endif
1655611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16565c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1657611f576cSBarry Smith #endif
1658b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1659b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1660b5e56a35SBarry Smith #endif
16615c9eb25fSBarry Smith EXTERN_C_END
16625c9eb25fSBarry Smith 
16630bad9183SKris Buschelman /*MC
1664fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16650bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16660bad9183SKris Buschelman 
16670bad9183SKris Buschelman    Options Database Keys:
16680bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16690bad9183SKris Buschelman 
16700bad9183SKris Buschelman   Level: beginner
16710bad9183SKris Buschelman 
16720bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16730bad9183SKris Buschelman M*/
16740bad9183SKris Buschelman 
1675a23d5eceSKris Buschelman EXTERN_C_BEGIN
1676a23d5eceSKris Buschelman #undef __FUNCT__
16774a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1678be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1679b5df2d14SHong Zhang {
1680b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1681dfbe8321SBarry Smith   PetscErrorCode ierr;
1682b5df2d14SHong Zhang   PetscTruth     flg;
1683b5df2d14SHong Zhang 
1684b5df2d14SHong Zhang   PetscFunctionBegin;
1685b5df2d14SHong Zhang 
168638f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1687b0a32e0cSBarry Smith   B->data = (void*)b;
1688b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1689b5df2d14SHong Zhang 
1690b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1691b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1692b5df2d14SHong Zhang   B->mapping         = 0;
1693b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1694b5df2d14SHong Zhang 
1695b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16967adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16977adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1698b5df2d14SHong Zhang 
1699b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1700899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1701b5df2d14SHong Zhang 
1702b5df2d14SHong Zhang   /* build cache for off array entries formed */
17037adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1704b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1705b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1706b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1707b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1708b5df2d14SHong Zhang 
1709b5df2d14SHong Zhang   /* stuff used in block assembly */
1710b5df2d14SHong Zhang   b->barray       = 0;
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1713b5df2d14SHong Zhang   b->lvec         = 0;
1714b5df2d14SHong Zhang   b->Mvctx        = 0;
171540781036SHong Zhang   b->slvec0       = 0;
171640781036SHong Zhang   b->slvec0b      = 0;
171740781036SHong Zhang   b->slvec1       = 0;
171840781036SHong Zhang   b->slvec1a      = 0;
171940781036SHong Zhang   b->slvec1b      = 0;
172040781036SHong Zhang   b->sMvctx       = 0;
1721b5df2d14SHong Zhang 
1722b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1723b5df2d14SHong Zhang   b->rowindices   = 0;
1724b5df2d14SHong Zhang   b->rowvalues    = 0;
1725b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1726b5df2d14SHong Zhang 
1727b5df2d14SHong Zhang   /* hash table stuff */
1728b5df2d14SHong Zhang   b->ht           = 0;
1729b5df2d14SHong Zhang   b->hd           = 0;
1730b5df2d14SHong Zhang   b->ht_size      = 0;
1731b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1732b5df2d14SHong Zhang   b->ht_fact      = 0;
1733b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1734b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1735b5df2d14SHong Zhang 
173659ffdab8SBarry Smith   b->in_loc       = 0;
173759ffdab8SBarry Smith   b->v_loc        = 0;
173859ffdab8SBarry Smith   b->n_loc        = 0;
17397adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17408c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1741b5df2d14SHong Zhang     if (flg) {
1742f6275e2eSBarry Smith       PetscReal fact = 1.39;
17434e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17448c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1745b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1746b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17471e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1748b5df2d14SHong Zhang     }
17498c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17508c07d4e3SBarry Smith 
1751b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1752ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1753b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1754b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1755b5e56a35SBarry Smith #endif
1756611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1757ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17585c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17595c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1760611f576cSBarry Smith #endif
1761611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1762ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17635c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17645c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1765611f576cSBarry Smith #endif
1766b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1767b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1768b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1769b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1770b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1771b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1772b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1773b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1774b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1775a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1776a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1777a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
177823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
177923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1783b5df2d14SHong Zhang   PetscFunctionReturn(0);
1784b5df2d14SHong Zhang }
1785273d9f13SBarry Smith EXTERN_C_END
1786b5df2d14SHong Zhang 
1787209238afSKris Buschelman /*MC
1788002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1789209238afSKris Buschelman 
1790209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1791209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1792209238afSKris Buschelman 
1793209238afSKris Buschelman    Options Database Keys:
1794209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1795209238afSKris Buschelman 
1796209238afSKris Buschelman   Level: beginner
1797209238afSKris Buschelman 
1798209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1799209238afSKris Buschelman M*/
1800209238afSKris Buschelman 
1801209238afSKris Buschelman EXTERN_C_BEGIN
1802209238afSKris Buschelman #undef __FUNCT__
1803209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1804be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1805dfbe8321SBarry Smith {
18066849ba73SBarry Smith   PetscErrorCode ierr;
18071302d50aSBarry Smith   PetscMPIInt    size;
1808209238afSKris Buschelman 
1809209238afSKris Buschelman   PetscFunctionBegin;
18107adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1811209238afSKris Buschelman   if (size == 1) {
1812209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1813209238afSKris Buschelman   } else {
1814209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1815209238afSKris Buschelman   }
1816209238afSKris Buschelman   PetscFunctionReturn(0);
1817209238afSKris Buschelman }
1818209238afSKris Buschelman EXTERN_C_END
1819209238afSKris Buschelman 
18204a2ae208SSatish Balay #undef __FUNCT__
18214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1822b5df2d14SHong Zhang /*@C
1823b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1824b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1825b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1826b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1827b5df2d14SHong Zhang 
1828b5df2d14SHong Zhang    Collective on Mat
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Input Parameters:
1831b5df2d14SHong Zhang +  A - the matrix
1832b5df2d14SHong Zhang .  bs   - size of blockk
1833b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1834b5df2d14SHong Zhang            submatrix  (same for all local rows)
1835b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18366d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18376d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18386d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1839b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1840b5df2d14SHong Zhang            submatrix (same for all local rows).
1841b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1842b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1843b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang 
1846b5df2d14SHong Zhang    Options Database Keys:
1847b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1848b5df2d14SHong Zhang                      block calculations (much slower)
1849b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1850b5df2d14SHong Zhang 
1851b5df2d14SHong Zhang    Notes:
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1854b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1855b5df2d14SHong Zhang 
185649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
185749a6f317SBarry Smith 
1858b5df2d14SHong Zhang    Storage Information:
1859b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1860b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1861b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1862b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1865b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1866b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1867b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1868b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1869b5df2d14SHong Zhang 
1870aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1871aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1872aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1873aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1874aa95bbe8SBarry Smith 
1875b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1876b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1877b5df2d14SHong Zhang 
1878b5df2d14SHong Zhang .vb
1879b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1880b5df2d14SHong Zhang           -------------------
1881b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1882b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1883b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1884b5df2d14SHong Zhang           -------------------
1885b5df2d14SHong Zhang .ve
1886b5df2d14SHong Zhang 
1887b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1888b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18896d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18906d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1891b5df2d14SHong Zhang 
18926d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18936d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1894b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1895b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1896b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1897b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1898b5df2d14SHong Zhang    matrices.
1899b5df2d14SHong Zhang 
1900b5df2d14SHong Zhang    Level: intermediate
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1903b5df2d14SHong Zhang 
1904b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1905b5df2d14SHong Zhang @*/
1906be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1907b5df2d14SHong Zhang {
19081302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1909b5df2d14SHong Zhang 
1910b5df2d14SHong Zhang   PetscFunctionBegin;
1911a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1912a23d5eceSKris Buschelman   if (f) {
1913a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1914b5df2d14SHong Zhang   }
1915b5df2d14SHong Zhang   PetscFunctionReturn(0);
1916b5df2d14SHong Zhang }
1917b5df2d14SHong Zhang 
19184a2ae208SSatish Balay #undef __FUNCT__
19194a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1920a30f8f8cSSatish Balay /*@C
1921a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1922a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1923a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1924a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1925a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1926a30f8f8cSSatish Balay 
1927a30f8f8cSSatish Balay    Collective on MPI_Comm
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay    Input Parameters:
1930a30f8f8cSSatish Balay +  comm - MPI communicator
1931a30f8f8cSSatish Balay .  bs   - size of blockk
1932a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1933a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1934a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1935a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1936a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1937a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1938a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1939a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1940a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1941a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1942a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19436d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19446d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19456d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1946a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1947a30f8f8cSSatish Balay            submatrix (same for all local rows).
1948a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1949a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1950a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1951a30f8f8cSSatish Balay 
1952a30f8f8cSSatish Balay    Output Parameter:
1953a30f8f8cSSatish Balay .  A - the matrix
1954a30f8f8cSSatish Balay 
1955a30f8f8cSSatish Balay    Options Database Keys:
1956a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1957a30f8f8cSSatish Balay                      block calculations (much slower)
1958a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1959a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1960a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1961a30f8f8cSSatish Balay 
1962175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1963ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1964175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1965175b88e8SBarry Smith 
1966a30f8f8cSSatish Balay    Notes:
1967d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19686d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1969d1be2dadSMatthew Knepley 
1970a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1971a30f8f8cSSatish Balay    (possibly both).
1972a30f8f8cSSatish Balay 
1973a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1974a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1975a30f8f8cSSatish Balay 
197649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197749a6f317SBarry Smith 
1978a30f8f8cSSatish Balay    Storage Information:
1979a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1980a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1981a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1982a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1983a30f8f8cSSatish Balay 
1984a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1985a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1986a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1987a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1988a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1989a30f8f8cSSatish Balay 
1990a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1991a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1992a30f8f8cSSatish Balay 
1993a30f8f8cSSatish Balay .vb
1994a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1995a30f8f8cSSatish Balay           -------------------
1996a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1997a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1998a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1999a30f8f8cSSatish Balay           -------------------
2000a30f8f8cSSatish Balay .ve
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2003a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20046d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20056d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2006a30f8f8cSSatish Balay 
20076d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20086d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2009a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2010a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2011a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2012a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2013a30f8f8cSSatish Balay    matrices.
2014a30f8f8cSSatish Balay 
2015a30f8f8cSSatish Balay    Level: intermediate
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2018a30f8f8cSSatish Balay 
2019a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2020a30f8f8cSSatish Balay @*/
2021a30f8f8cSSatish Balay 
2022be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2023a30f8f8cSSatish Balay {
20246849ba73SBarry Smith   PetscErrorCode ierr;
20251302d50aSBarry Smith   PetscMPIInt    size;
2026a30f8f8cSSatish Balay 
2027a30f8f8cSSatish Balay   PetscFunctionBegin;
2028f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2029f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2030273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2031273d9f13SBarry Smith   if (size > 1) {
2032b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2033b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2034273d9f13SBarry Smith   } else {
2035273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2036273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2037273d9f13SBarry Smith   }
2038a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2039a30f8f8cSSatish Balay }
2040a30f8f8cSSatish Balay 
2041a30f8f8cSSatish Balay 
20424a2ae208SSatish Balay #undef __FUNCT__
20434a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2045a30f8f8cSSatish Balay {
2046a30f8f8cSSatish Balay   Mat            mat;
2047a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2048dfbe8321SBarry Smith   PetscErrorCode ierr;
2049d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2050387bc808SHong Zhang   PetscScalar    *array;
2051a30f8f8cSSatish Balay 
2052a30f8f8cSSatish Balay   PetscFunctionBegin;
2053a30f8f8cSSatish Balay   *newmat       = 0;
20547adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2055d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20567adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20571d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
205826283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
205926283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2060e1b6402fSHong Zhang 
206182327fa8SHong Zhang   mat->factor       = matin->factor;
2062273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20647fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20657fff6886SHong Zhang 
2066b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2067a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2068a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2069a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2070a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2071a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2072a30f8f8cSSatish Balay 
2073899cda47SBarry Smith 
2074a30f8f8cSSatish Balay   a->size         = oldmat->size;
2075a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2076a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2077a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2078a30f8f8cSSatish Balay   a->rowindices   = 0;
2079a30f8f8cSSatish Balay   a->rowvalues    = 0;
2080a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2081a30f8f8cSSatish Balay   a->barray       = 0;
2082899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2083899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2084899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2085899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2086a30f8f8cSSatish Balay 
2087a30f8f8cSSatish Balay   /* hash table stuff */
2088a30f8f8cSSatish Balay   a->ht           = 0;
2089a30f8f8cSSatish Balay   a->hd           = 0;
2090a30f8f8cSSatish Balay   a->ht_size      = 0;
2091a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2092a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2093a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2094a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2095a30f8f8cSSatish Balay 
2096899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
20977adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
2098d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2099a30f8f8cSSatish Balay   if (oldmat->colmap) {
2100a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2101a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2102a30f8f8cSSatish Balay #else
21031302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21051302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2106a30f8f8cSSatish Balay #endif
2107a30f8f8cSSatish Balay   } else a->colmap = 0;
2108387bc808SHong Zhang 
2109a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21101302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
211152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21121302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2113a30f8f8cSSatish Balay   } else a->garray = 0;
2114a30f8f8cSSatish Balay 
2115a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
211652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2117a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
211982327fa8SHong Zhang 
212082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2124387bc808SHong Zhang 
2125387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21261ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2127387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2128387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21291ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21301ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2131387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21321ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
213652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2138387bc808SHong Zhang 
2139387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2140387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2141387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214382327fa8SHong Zhang 
2144a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2146a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21487adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2149a30f8f8cSSatish Balay   *newmat = mat;
2150a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2151a30f8f8cSSatish Balay }
2152a30f8f8cSSatish Balay 
2153a30f8f8cSSatish Balay #include "petscsys.h"
2154a30f8f8cSSatish Balay 
21554a2ae208SSatish Balay #undef __FUNCT__
21564a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2157a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2158a30f8f8cSSatish Balay {
2159a30f8f8cSSatish Balay   Mat            A;
21606849ba73SBarry Smith   PetscErrorCode ierr;
216113f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216287828ca2SBarry Smith   PetscScalar    *vals,*buf;
2163a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2164a30f8f8cSSatish Balay   MPI_Status     status;
2165e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
216613f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21672fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21681302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21691302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21701302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217113f74950SBarry Smith   int            fd;
2172a30f8f8cSSatish Balay 
2173a30f8f8cSSatish Balay   PetscFunctionBegin;
217477925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21758c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21768c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2177a30f8f8cSSatish Balay 
2178a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay   if (!rank) {
2181b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2183552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2184a30f8f8cSSatish Balay     if (header[3] < 0) {
218529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2186a30f8f8cSSatish Balay     }
2187a30f8f8cSSatish Balay   }
2188a30f8f8cSSatish Balay 
2189a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2191a30f8f8cSSatish Balay 
219229bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2193a30f8f8cSSatish Balay 
2194a30f8f8cSSatish Balay   /*
2195a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2196a30f8f8cSSatish Balay      divisible by the blocksize
2197a30f8f8cSSatish Balay   */
2198a30f8f8cSSatish Balay   Mbs        = M/bs;
2199a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2200a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2201a30f8f8cSSatish Balay   else                  Mbs++;
2202a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
22031e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2204a30f8f8cSSatish Balay   }
2205a30f8f8cSSatish Balay 
2206a30f8f8cSSatish Balay   /* determine ownership of all rows */
2207a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2208a30f8f8cSSatish Balay   m          = mbs*bs;
2209*74ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2210e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2211e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay   rowners[0] = 0;
2213a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2214a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2215a30f8f8cSSatish Balay   rstart = rowners[rank];
2216a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2217a30f8f8cSSatish Balay 
2218a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22192fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay   if (!rank) {
22211302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2224a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2226a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   } else {
2229a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay   }
2231a30f8f8cSSatish Balay 
22320222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2233a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22341302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22351302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2236a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2237a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2238a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2239a30f8f8cSSatish Balay       }
2240a30f8f8cSSatish Balay     }
2241a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2242a30f8f8cSSatish Balay 
2243a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2244a30f8f8cSSatish Balay     maxnz = 0;
2245a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2246a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2247a30f8f8cSSatish Balay     }
22481302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay 
2250a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2251a30f8f8cSSatish Balay     nz     = procsnz[0];
22521302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2253a30f8f8cSSatish Balay     mycols = ibuf;
2254a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2255a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2257a30f8f8cSSatish Balay 
2258a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2259a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2260a30f8f8cSSatish Balay       nz   = procsnz[i];
2261a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2262a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2263a30f8f8cSSatish Balay     }
2264a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2265a30f8f8cSSatish Balay     if (size != 1) {
2266a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2267a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2269a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay     }
2271a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22720222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2273a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2274a30f8f8cSSatish Balay     nz = 0;
2275a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2276a30f8f8cSSatish Balay       nz += locrowlens[i];
2277a30f8f8cSSatish Balay     }
22781302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay     mycols = ibuf;
2280a30f8f8cSSatish Balay     /* receive message of column indices*/
2281a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2282a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2284a30f8f8cSSatish Balay   }
2285a30f8f8cSSatish Balay 
2286a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2287*74ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2288*74ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2289*74ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2290*74ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2291*74ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2292*74ed9c26SBarry Smith   rowcount = 0;
2293*74ed9c26SBarry Smith   nzcount  = 0;
2294a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2295a30f8f8cSSatish Balay     dcount  = 0;
2296a30f8f8cSSatish Balay     odcount = 0;
2297a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2298a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2299a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23000222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2301a30f8f8cSSatish Balay         if (!mask[tmp]) {
2302a30f8f8cSSatish Balay           mask[tmp] = 1;
23030222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23040222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2305a30f8f8cSSatish Balay         }
2306a30f8f8cSSatish Balay       }
2307a30f8f8cSSatish Balay       rowcount++;
2308a30f8f8cSSatish Balay     }
2309a30f8f8cSSatish Balay 
23100222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23110222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2312a30f8f8cSSatish Balay 
2313a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2314a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2315a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2316a30f8f8cSSatish Balay   }
2317a30f8f8cSSatish Balay 
2318a30f8f8cSSatish Balay   /* create our matrix */
2319f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2320f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
232122191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232217fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
232322191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2324a30f8f8cSSatish Balay 
2325a30f8f8cSSatish Balay   if (!rank) {
232687828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2327a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2328a30f8f8cSSatish Balay     nz = procsnz[0];
2329a30f8f8cSSatish Balay     vals = buf;
2330a30f8f8cSSatish Balay     mycols = ibuf;
2331a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2332a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2333a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2334a30f8f8cSSatish Balay 
2335a30f8f8cSSatish Balay     /* insert into matrix */
2336a30f8f8cSSatish Balay     jj      = rstart*bs;
2337a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23387e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2339a30f8f8cSSatish Balay       mycols += locrowlens[i];
2340a30f8f8cSSatish Balay       vals   += locrowlens[i];
2341a30f8f8cSSatish Balay       jj++;
2342a30f8f8cSSatish Balay     }
23437e06b45fSHong Zhang 
2344a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2345a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2346a30f8f8cSSatish Balay       nz   = procsnz[i];
2347a30f8f8cSSatish Balay       vals = buf;
2348a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23497adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2350a30f8f8cSSatish Balay     }
2351a30f8f8cSSatish Balay     /* the last proc */
2352a30f8f8cSSatish Balay     if (size != 1){
2353a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2354a30f8f8cSSatish Balay       vals = buf;
2355a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2356a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23577adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay     }
2359a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23607e06b45fSHong Zhang 
2361a30f8f8cSSatish Balay   } else {
2362a30f8f8cSSatish Balay     /* receive numeric values */
236387828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2364a30f8f8cSSatish Balay 
2365a30f8f8cSSatish Balay     /* receive message of values*/
2366a30f8f8cSSatish Balay     vals   = buf;
2367a30f8f8cSSatish Balay     mycols = ibuf;
23687adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2369a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2371a30f8f8cSSatish Balay 
2372a30f8f8cSSatish Balay     /* insert into matrix */
2373a30f8f8cSSatish Balay     jj      = rstart*bs;
2374a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2375a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2376a30f8f8cSSatish Balay       mycols += locrowlens[i];
2377a30f8f8cSSatish Balay       vals   += locrowlens[i];
2378a30f8f8cSSatish Balay       jj++;
2379a30f8f8cSSatish Balay     }
2380a30f8f8cSSatish Balay   }
23817e06b45fSHong Zhang 
2382a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2383a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2384a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2385*74ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2386*74ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2387*74ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2388a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2389a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239022191285SKris Buschelman   *newmat = A;
2391a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2392a30f8f8cSSatish Balay }
2393a30f8f8cSSatish Balay 
23944a2ae208SSatish Balay #undef __FUNCT__
23954a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2396dcf5cc72SBarry Smith /*XXXXX@
2397a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2398a30f8f8cSSatish Balay 
2399a30f8f8cSSatish Balay    Input Parameters:
2400a30f8f8cSSatish Balay .  mat  - the matrix
2401a30f8f8cSSatish Balay .  fact - factor
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay    Collective on Mat
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay    Level: advanced
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay   Notes:
2408a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2409a30f8f8cSSatish Balay 
2410a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay .seealso: MatSetOption()
2413dcf5cc72SBarry Smith @XXXXX*/
2414dcf5cc72SBarry Smith 
241524d5174aSHong Zhang 
24164a2ae208SSatish Balay #undef __FUNCT__
2417985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2418985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
241924d5174aSHong Zhang {
242024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2421f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2422ca54ac64SHong Zhang   PetscReal      atmp;
242387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2424dfbe8321SBarry Smith   PetscErrorCode ierr;
24251302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24261302d50aSBarry Smith   PetscMPIInt    rank,size;
24271302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
242887828ca2SBarry Smith   PetscScalar    *va;
24298a1c53f2SBarry Smith   MatScalar      *ba;
2430f4c0e9e4SHong Zhang   MPI_Status     stat;
243124d5174aSHong Zhang 
243224d5174aSHong Zhang   PetscFunctionBegin;
2433985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2434985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24351ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2436f4c0e9e4SHong Zhang 
24377adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24387adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2439f4c0e9e4SHong Zhang 
2440d0f46423SBarry Smith   bs   = A->rmap->bs;
2441f4c0e9e4SHong Zhang   mbs  = a->mbs;
2442f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2443f4c0e9e4SHong Zhang   ba   = b->a;
2444f4c0e9e4SHong Zhang   bi   = b->i;
2445f4c0e9e4SHong Zhang   bj   = b->j;
2446f4c0e9e4SHong Zhang 
2447f4c0e9e4SHong Zhang   /* find ownerships */
2448d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2449f4c0e9e4SHong Zhang 
2450f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245182502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2452ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2453f4c0e9e4SHong Zhang 
2454f4c0e9e4SHong Zhang   /* row_max for B */
2455b8475685SHong Zhang   if (rank != size-1){
2456f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2457f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2458f4c0e9e4SHong Zhang       brow  = bs*i;
2459f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2460f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2461f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2462ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2464f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2465f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2466ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2467ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2468f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2469f4c0e9e4SHong Zhang           }
2470f4c0e9e4SHong Zhang         }
2471f4c0e9e4SHong Zhang         bj++;
2472f4c0e9e4SHong Zhang       }
2473f4c0e9e4SHong Zhang     }
2474f4c0e9e4SHong Zhang 
2475f4c0e9e4SHong Zhang     /* send values to its owners */
2476f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2477f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2478ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24797adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2480ca54ac64SHong Zhang     }
2481f4c0e9e4SHong Zhang   }
2482f4c0e9e4SHong Zhang 
2483f4c0e9e4SHong Zhang   /* receive values */
2484ca54ac64SHong Zhang   if (rank){
2485f4c0e9e4SHong Zhang     rvalues = work;
2486ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2487f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24887adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2489f4c0e9e4SHong Zhang       /* process values */
2490f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2491ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2492f4c0e9e4SHong Zhang       }
2493f4c0e9e4SHong Zhang     }
2494ca54ac64SHong Zhang   }
2495f4c0e9e4SHong Zhang 
24961ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2497ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
249824d5174aSHong Zhang   PetscFunctionReturn(0);
249924d5174aSHong Zhang }
25002798e883SHong Zhang 
25012798e883SHong Zhang #undef __FUNCT__
250241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
250341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25042798e883SHong Zhang {
25052798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2506dfbe8321SBarry Smith   PetscErrorCode ierr;
2507d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2508fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2509ffe4fb16SHong Zhang   Vec            bb1;
2510ffe4fb16SHong Zhang 
2511ffe4fb16SHong Zhang   PetscFunctionBegin;
251277431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2513b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2514ffe4fb16SHong Zhang 
2515a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
251641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2517a2b30743SBarry Smith     PetscFunctionReturn(0);
2518a2b30743SBarry Smith   }
2519a2b30743SBarry Smith 
2520ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2521ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
252241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2523ffe4fb16SHong Zhang       its--;
2524ffe4fb16SHong Zhang     }
2525ffe4fb16SHong Zhang 
2526ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2527ffe4fb16SHong Zhang     while (its--){
2528ffe4fb16SHong Zhang 
2529ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2530ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2531ffe4fb16SHong Zhang 
2532ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25331ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25341ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25361ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang 
2538efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2539ffe4fb16SHong Zhang 
2540ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25411ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25421ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2543ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25441ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2545ffe4fb16SHong Zhang 
2546ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2547fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2548ffe4fb16SHong Zhang 
2549ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25501ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25511ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2552ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2555ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang 
2557ffe4fb16SHong Zhang       /* local diagonal sweep */
255841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2559ffe4fb16SHong Zhang     }
2560ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2561fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2563fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2565fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2566fa22f6d0SBarry Smith     Vec               xx1;
2567fa22f6d0SBarry Smith     PetscTruth        hasop;
256820f1ed55SBarry Smith     const PetscScalar *diag;
2569887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
257020f1ed55SBarry Smith     PetscInt          i,n;
2571fa22f6d0SBarry Smith 
2572fa22f6d0SBarry Smith     if (!mat->xx1) {
2573fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2574fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2575fa22f6d0SBarry Smith     }
2576fa22f6d0SBarry Smith     xx1 = mat->xx1;
2577fa22f6d0SBarry Smith     bb1 = mat->bb1;
2578fa22f6d0SBarry Smith 
257941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2580fa22f6d0SBarry Smith 
2581fa22f6d0SBarry Smith     if (!mat->diag) {
2582effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2583fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2584fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2585fa22f6d0SBarry Smith     }
2586fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2587fa22f6d0SBarry Smith 
2588fa22f6d0SBarry Smith     if (hasop) {
2589fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2590887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259120f1ed55SBarry Smith     } else {
259220f1ed55SBarry Smith       /*
259320f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
259420f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2595887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259620f1ed55SBarry Smith       */
259720f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
259820f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
259920f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
260020f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
260120f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2602887ee2caSBarry Smith       if (omega == 1.0) {
260320f1ed55SBarry Smith 	for (i=0; i<n; i++) {
260420f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
260520f1ed55SBarry Smith 	}
260620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2607887ee2caSBarry Smith       } else {
2608887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2609887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2610887ee2caSBarry Smith 	}
2611887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2612887ee2caSBarry Smith       }
261320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
261420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
261520f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
261620f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
261720f1ed55SBarry Smith     }
2618fa22f6d0SBarry Smith 
2619fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2620fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2621fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2622fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2623fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2624fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2625fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2627fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2628fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2629effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2630fa22f6d0SBarry Smith 
2631fa22f6d0SBarry Smith     /* local sweep */
263241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2633fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2634ffe4fb16SHong Zhang   } else {
2635ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2636ffe4fb16SHong Zhang   }
2637ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2638ffe4fb16SHong Zhang }
2639ffe4fb16SHong Zhang 
2640ffe4fb16SHong Zhang #undef __FUNCT__
264141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
264241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2643ffe4fb16SHong Zhang {
2644ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2645dfbe8321SBarry Smith   PetscErrorCode ierr;
26462798e883SHong Zhang   Vec            lvec1,bb1;
26472798e883SHong Zhang 
26482798e883SHong Zhang   PetscFunctionBegin;
264977431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2650b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26512798e883SHong Zhang 
2652c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26532798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
265441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26552798e883SHong Zhang       its--;
26562798e883SHong Zhang     }
26572798e883SHong Zhang 
26582798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26592798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26602798e883SHong Zhang     while (its--){
2661ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26622798e883SHong Zhang 
26632798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26642798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2665efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26662798e883SHong Zhang 
2667ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26682798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2669ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26702798e883SHong Zhang 
26712798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2672efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26732798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26742798e883SHong Zhang 
2675ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26762798e883SHong Zhang 
2677c14dc6b6SHong Zhang       /* diagonal sweep */
267841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26792798e883SHong Zhang     }
26802798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26812798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2682c14dc6b6SHong Zhang   } else {
2683c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2684c14dc6b6SHong Zhang   }
26852798e883SHong Zhang   PetscFunctionReturn(0);
26862798e883SHong Zhang }
26872798e883SHong Zhang 
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