xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 75dbe01d0102b3d1f476e163bbbbf612f241f502)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
52d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237a30f8f8cSSatish Balay   a_noinsert:; \
238a30f8f8cSSatish Balay     ailen[brow] = nrow; \
239a8f51744SPierre Jolivet   } while (0)
240e5e170daSBarry Smith 
241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
242a8f51744SPierre Jolivet   do { \
243a30f8f8cSSatish Balay     brow = row / bs; \
2449371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2459371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2469371c9d4SSatish Balay     rmax = bimax[brow]; \
2479371c9d4SSatish Balay     nrow = bilen[brow]; \
248a30f8f8cSSatish Balay     bcol = col / bs; \
2499371c9d4SSatish Balay     ridx = row % bs; \
2509371c9d4SSatish Balay     cidx = col % bs; \
2519371c9d4SSatish Balay     low  = 0; \
2529371c9d4SSatish Balay     high = nrow; \
253a30f8f8cSSatish Balay     while (high - low > 3) { \
254a30f8f8cSSatish Balay       t = (low + high) / 2; \
255a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
256a30f8f8cSSatish Balay       else low = t; \
257a30f8f8cSSatish Balay     } \
258a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
259a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
260a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
261a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
262a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
263a30f8f8cSSatish Balay         else *bap = value; \
264a30f8f8cSSatish Balay         goto b_noinsert; \
265a30f8f8cSSatish Balay       } \
266a30f8f8cSSatish Balay     } \
267a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2685f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
269fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
270a30f8f8cSSatish Balay     N = nrow++ - 1; \
271a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2729566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
275a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
276a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
277a30f8f8cSSatish Balay   b_noinsert:; \
278a30f8f8cSSatish Balay     bilen[brow] = nrow; \
279a8f51744SPierre Jolivet   } while (0)
280a30f8f8cSSatish Balay 
281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
282da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
283a30f8f8cSSatish Balay */
28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
285d71ae5a4SJacob Faibussowitsch {
286a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
287a30f8f8cSSatish Balay   MatScalar     value;
288ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2891302d50aSBarry Smith   PetscInt      i, j, row, col;
290d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
291d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
292d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
293a30f8f8cSSatish Balay 
294a30f8f8cSSatish Balay   /* Some Variables required in the macro */
295a30f8f8cSSatish Balay   Mat           A     = baij->A;
29657508eceSPierre Jolivet   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)A->data;
2971302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
298a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
299a30f8f8cSSatish Balay 
300a30f8f8cSSatish Balay   Mat          B     = baij->B;
30157508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
3021302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
303a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
304a30f8f8cSSatish Balay 
3051302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3061302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
307a30f8f8cSSatish Balay   MatScalar *ap, *bap;
308a30f8f8cSSatish Balay 
309a30f8f8cSSatish Balay   /* for stash */
3100298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3110298fd71SBarry Smith   MatScalar *v_loc = NULL;
312a30f8f8cSSatish Balay 
313a30f8f8cSSatish Balay   PetscFunctionBegin;
314a30f8f8cSSatish Balay   if (!baij->donotstash) {
31559ffdab8SBarry Smith     if (n > baij->n_loc) {
3169566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3179566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3189566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32026fbe8dcSKarl Rupp 
32159ffdab8SBarry Smith       baij->n_loc = n;
32259ffdab8SBarry Smith     }
32359ffdab8SBarry Smith     in_loc = baij->in_loc;
32459ffdab8SBarry Smith     v_loc  = baij->v_loc;
325a30f8f8cSSatish Balay   }
326a30f8f8cSSatish Balay 
327a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
328a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3295f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
330a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
331a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
332a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33301b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
334966bd95aSPierre Jolivet           PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33501b2bd88SHong Zhang           continue; /* ignore lower triangular blocks */
33601b2bd88SHong Zhang         }
337a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
338a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3399371c9d4SSatish Balay           brow = row / bs;
3409371c9d4SSatish Balay           bcol = col / bs;
341a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
342db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
343db4deed7SKarl Rupp           else value = v[i + j * m];
344d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3459566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
346f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
347f7d195e4SLawrence Mitchell           continue;
348f7d195e4SLawrence Mitchell         } else {
349f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
350f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
351a30f8f8cSSatish Balay           if (mat->was_assembled) {
35248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
353a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
354eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35571730473SSatish Balay             col = col - 1;
356a30f8f8cSSatish Balay #else
35771730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
358a30f8f8cSSatish Balay #endif
359f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) {
3609566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
361a30f8f8cSSatish Balay               col = in[j];
362a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
363a30f8f8cSSatish Balay               B     = baij->B;
36457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
3659371c9d4SSatish Balay               bimax = b->imax;
3669371c9d4SSatish Balay               bi    = b->i;
3679371c9d4SSatish Balay               bilen = b->ilen;
3689371c9d4SSatish Balay               bj    = b->j;
369a30f8f8cSSatish Balay               ba    = b->a;
37071730473SSatish Balay             } else col += in[j] % bs;
371a30f8f8cSSatish Balay           } else col = in[j];
372db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
373db4deed7SKarl Rupp           else value = v[i + j * m];
374d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3759566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
376a30f8f8cSSatish Balay         }
377a30f8f8cSSatish Balay       }
378a30f8f8cSSatish Balay     } else { /* off processor entry */
3795f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
380a30f8f8cSSatish Balay       if (!baij->donotstash) {
3815080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
382a30f8f8cSSatish Balay         n_loc          = 0;
383a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
384f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
385a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
386a30f8f8cSSatish Balay           if (roworiented) {
387a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
388a30f8f8cSSatish Balay           } else {
389a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
390a30f8f8cSSatish Balay           }
391a30f8f8cSSatish Balay           n_loc++;
392a30f8f8cSSatish Balay         }
3939566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     }
396a30f8f8cSSatish Balay   }
3973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
398a30f8f8cSSatish Balay }
399a30f8f8cSSatish Balay 
400d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
401d71ae5a4SJacob Faibussowitsch {
40236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40336bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40436bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40536bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40636bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
40736bd2089SBarry Smith   const PetscScalar *value       = v;
40836bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
40936bd2089SBarry Smith 
41036bd2089SBarry Smith   PetscFunctionBegin;
41136bd2089SBarry Smith   if (col < row) {
412966bd95aSPierre Jolivet     PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
413966bd95aSPierre Jolivet     PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41436bd2089SBarry Smith   }
41536bd2089SBarry Smith   rp    = aj + ai[row];
41636bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
41736bd2089SBarry Smith   rmax  = imax[row];
41836bd2089SBarry Smith   nrow  = ailen[row];
41936bd2089SBarry Smith   value = v;
42036bd2089SBarry Smith   low   = 0;
42136bd2089SBarry Smith   high  = nrow;
42236bd2089SBarry Smith 
42336bd2089SBarry Smith   while (high - low > 7) {
42436bd2089SBarry Smith     t = (low + high) / 2;
42536bd2089SBarry Smith     if (rp[t] > col) high = t;
42636bd2089SBarry Smith     else low = t;
42736bd2089SBarry Smith   }
42836bd2089SBarry Smith   for (i = low; i < high; i++) {
42936bd2089SBarry Smith     if (rp[i] > col) break;
43036bd2089SBarry Smith     if (rp[i] == col) {
43136bd2089SBarry Smith       bap = ap + bs2 * i;
43236bd2089SBarry Smith       if (roworiented) {
43336bd2089SBarry Smith         if (is == ADD_VALUES) {
43436bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
435ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43636bd2089SBarry Smith           }
43736bd2089SBarry Smith         } else {
43836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
439ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44036bd2089SBarry Smith           }
44136bd2089SBarry Smith         }
44236bd2089SBarry Smith       } else {
44336bd2089SBarry Smith         if (is == ADD_VALUES) {
44436bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
445ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44636bd2089SBarry Smith           }
44736bd2089SBarry Smith         } else {
44836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
449ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45036bd2089SBarry Smith           }
45136bd2089SBarry Smith         }
45236bd2089SBarry Smith       }
45336bd2089SBarry Smith       goto noinsert2;
45436bd2089SBarry Smith     }
45536bd2089SBarry Smith   }
45636bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4575f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
45836bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4599371c9d4SSatish Balay   N = nrow++ - 1;
4609371c9d4SSatish Balay   high++;
46136bd2089SBarry Smith   /* shift up all the later entries in this row */
4629566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4639566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46436bd2089SBarry Smith   rp[i] = col;
46536bd2089SBarry Smith   bap   = ap + bs2 * i;
46636bd2089SBarry Smith   if (roworiented) {
46736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
468ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
46936bd2089SBarry Smith     }
47036bd2089SBarry Smith   } else {
47136bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
472ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47336bd2089SBarry Smith     }
47436bd2089SBarry Smith   }
47536bd2089SBarry Smith noinsert2:;
47636bd2089SBarry Smith   ailen[row] = nrow;
4773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47836bd2089SBarry Smith }
47936bd2089SBarry Smith 
48036bd2089SBarry Smith /*
48136bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48236bd2089SBarry Smith */
483d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
484d71ae5a4SJacob Faibussowitsch {
48536bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48636bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
48736bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
48836bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
48936bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49036bd2089SBarry Smith   const PetscScalar *value       = v;
49136bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49236bd2089SBarry Smith 
49336bd2089SBarry Smith   PetscFunctionBegin;
49436bd2089SBarry Smith   rp    = aj + ai[row];
49536bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49636bd2089SBarry Smith   rmax  = imax[row];
49736bd2089SBarry Smith   nrow  = ailen[row];
49836bd2089SBarry Smith   low   = 0;
49936bd2089SBarry Smith   high  = nrow;
50036bd2089SBarry Smith   value = v;
50136bd2089SBarry Smith   while (high - low > 7) {
50236bd2089SBarry Smith     t = (low + high) / 2;
50336bd2089SBarry Smith     if (rp[t] > col) high = t;
50436bd2089SBarry Smith     else low = t;
50536bd2089SBarry Smith   }
50636bd2089SBarry Smith   for (i = low; i < high; i++) {
50736bd2089SBarry Smith     if (rp[i] > col) break;
50836bd2089SBarry Smith     if (rp[i] == col) {
50936bd2089SBarry Smith       bap = ap + bs2 * i;
51036bd2089SBarry Smith       if (roworiented) {
51136bd2089SBarry Smith         if (is == ADD_VALUES) {
51236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
513ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51436bd2089SBarry Smith           }
51536bd2089SBarry Smith         } else {
51636bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
517ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
51836bd2089SBarry Smith           }
51936bd2089SBarry Smith         }
52036bd2089SBarry Smith       } else {
52136bd2089SBarry Smith         if (is == ADD_VALUES) {
52236bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
523ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52436bd2089SBarry Smith             bap += bs;
52536bd2089SBarry Smith           }
52636bd2089SBarry Smith         } else {
52736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
528ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
52936bd2089SBarry Smith             bap += bs;
53036bd2089SBarry Smith           }
53136bd2089SBarry Smith         }
53236bd2089SBarry Smith       }
53336bd2089SBarry Smith       goto noinsert2;
53436bd2089SBarry Smith     }
53536bd2089SBarry Smith   }
53636bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5375f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
53836bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5399371c9d4SSatish Balay   N = nrow++ - 1;
5409371c9d4SSatish Balay   high++;
54136bd2089SBarry Smith   /* shift up all the later entries in this row */
5429566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5439566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54436bd2089SBarry Smith   rp[i] = col;
54536bd2089SBarry Smith   bap   = ap + bs2 * i;
54636bd2089SBarry Smith   if (roworiented) {
54736bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
548ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
54936bd2089SBarry Smith     }
55036bd2089SBarry Smith   } else {
55136bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
552ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55336bd2089SBarry Smith     }
55436bd2089SBarry Smith   }
55536bd2089SBarry Smith noinsert2:;
55636bd2089SBarry Smith   ailen[row] = nrow;
5573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55836bd2089SBarry Smith }
55936bd2089SBarry Smith 
56036bd2089SBarry Smith /*
56136bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56236bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56336bd2089SBarry Smith */
56466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
565d71ae5a4SJacob Faibussowitsch {
5660880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
567f15d580aSBarry Smith   const MatScalar *value;
568f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
569ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
570899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
571476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
572476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5730880e062SHong Zhang 
574a30f8f8cSSatish Balay   PetscFunctionBegin;
5750880e062SHong Zhang   if (!barray) {
5769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5770880e062SHong Zhang     baij->barray = barray;
5780880e062SHong Zhang   }
5790880e062SHong Zhang 
5800880e062SHong Zhang   if (roworiented) {
5810880e062SHong Zhang     stepval = (n - 1) * bs;
5820880e062SHong Zhang   } else {
5830880e062SHong Zhang     stepval = (m - 1) * bs;
5840880e062SHong Zhang   }
5850880e062SHong Zhang   for (i = 0; i < m; i++) {
5860880e062SHong Zhang     if (im[i] < 0) continue;
5876bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5880880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5890880e062SHong Zhang       row = im[i] - rstart;
5900880e062SHong Zhang       for (j = 0; j < n; j++) {
591f3f98c53SJed Brown         if (im[i] > in[j]) {
592966bd95aSPierre Jolivet           PetscCheck(ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
593966bd95aSPierre Jolivet           continue; /* ignore lower triangular blocks */
594f3f98c53SJed Brown         }
5950880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
596966bd95aSPierre Jolivet         if (roworiented && n == 1) {
597f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
5980880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
599f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6000880e062SHong Zhang         } else { /* Here a copy is required */
6010880e062SHong Zhang           if (roworiented) {
6020880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6030880e062SHong Zhang           } else {
6040880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6050880e062SHong Zhang           }
6060880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
607ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6080880e062SHong Zhang           }
6090880e062SHong Zhang           barray -= bs2;
6100880e062SHong Zhang         }
6110880e062SHong Zhang 
6120880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6130880e062SHong Zhang           col = in[j] - cstart;
6149566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
615f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
616f7d195e4SLawrence Mitchell           continue;
617f7d195e4SLawrence Mitchell         } else {
618f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6190880e062SHong Zhang           if (mat->was_assembled) {
62048a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6210880e062SHong Zhang 
6220880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
623eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
624b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
6250880e062SHong Zhang #else
626b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
6270880e062SHong Zhang #endif
628f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
6299566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6300880e062SHong Zhang               col = in[j];
6310880e062SHong Zhang             }
63226fbe8dcSKarl Rupp           } else col = in[j];
6339566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6340880e062SHong Zhang         }
6350880e062SHong Zhang       }
6360880e062SHong Zhang     } else {
6375f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6380880e062SHong Zhang       if (!baij->donotstash) {
6390880e062SHong Zhang         if (roworiented) {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410880e062SHong Zhang         } else {
6429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430880e062SHong Zhang         }
6440880e062SHong Zhang       }
6450880e062SHong Zhang     }
6460880e062SHong Zhang   }
6473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay 
65066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
651d71ae5a4SJacob Faibussowitsch {
652f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
653d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
654d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   PetscFunctionBegin;
657a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
65854c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
65954c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
660966bd95aSPierre Jolivet     PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
661a30f8f8cSSatish Balay     row = idxm[i] - bsrstart;
662a30f8f8cSSatish Balay     for (j = 0; j < n; j++) {
66354c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
66454c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
665a30f8f8cSSatish Balay       if (idxn[j] >= bscstart && idxn[j] < bscend) {
666a30f8f8cSSatish Balay         col = idxn[j] - bscstart;
6679566063dSJacob Faibussowitsch         PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
668a30f8f8cSSatish Balay       } else {
66948a46eb9SPierre Jolivet         if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
670a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
671eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
672a30f8f8cSSatish Balay         data--;
673a30f8f8cSSatish Balay #else
674a30f8f8cSSatish Balay         data = baij->colmap[idxn[j] / bs] - 1;
675a30f8f8cSSatish Balay #endif
676966bd95aSPierre Jolivet         if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0;
677a30f8f8cSSatish Balay         else {
678a30f8f8cSSatish Balay           col = data + idxn[j] % bs;
6799566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
680a30f8f8cSSatish Balay         }
681a30f8f8cSSatish Balay       }
682a30f8f8cSSatish Balay     }
683a30f8f8cSSatish Balay   }
6843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
685a30f8f8cSSatish Balay }
686a30f8f8cSSatish Balay 
68766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
688d71ae5a4SJacob Faibussowitsch {
689a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
690a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
691a30f8f8cSSatish Balay 
692a30f8f8cSSatish Balay   PetscFunctionBegin;
693a30f8f8cSSatish Balay   if (baij->size == 1) {
6949566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
695a30f8f8cSSatish Balay   } else {
696a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
6989566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
6999371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
700*75dbe01dSPierre Jolivet       lnorm2++; /* square power of norm(A) */
7019566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7029371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
703*75dbe01dSPierre Jolivet       lnorm2--; /* square power of norm(B) */
704462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7058f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7069566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7070b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7080b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7090b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
710e91c04dfSPierre Jolivet       PetscReal    *rsum, vabs;
711899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
712d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7130b8dc8d2SHong Zhang       MatScalar    *v;
7140b8dc8d2SHong Zhang 
715*75dbe01dSPierre Jolivet       PetscCall(PetscCalloc1(mat->cmap->N, &rsum));
7160b8dc8d2SHong Zhang       /* Amat */
7179371c9d4SSatish Balay       v  = amat->a;
7189371c9d4SSatish Balay       jj = amat->j;
7190b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7200b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7210b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7220b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7239371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7249371c9d4SSatish Balay           jj++;
7250b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7260b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7279371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7289371c9d4SSatish Balay               v++;
7290b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7300b8dc8d2SHong Zhang               /* non-diagonal block */
7310b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7320b8dc8d2SHong Zhang             }
7330b8dc8d2SHong Zhang           }
7340b8dc8d2SHong Zhang         }
7359566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7360b8dc8d2SHong Zhang       }
7370b8dc8d2SHong Zhang       /* Bmat */
7389371c9d4SSatish Balay       v  = bmat->a;
7399371c9d4SSatish Balay       jj = bmat->j;
7400b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7410b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7420b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7430b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7449371c9d4SSatish Balay           gcol = bs * garray[*jj];
7459371c9d4SSatish Balay           jj++;
7460b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7470b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7489371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7499371c9d4SSatish Balay               v++;
7500b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7510b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7520b8dc8d2SHong Zhang             }
7530b8dc8d2SHong Zhang           }
7540b8dc8d2SHong Zhang         }
7559566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7560b8dc8d2SHong Zhang       }
757e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7580b8dc8d2SHong Zhang       *norm = 0.0;
759d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
760e91c04dfSPierre Jolivet         if (rsum[col] > *norm) *norm = rsum[col];
7610b8dc8d2SHong Zhang       }
762e91c04dfSPierre Jolivet       PetscCall(PetscFree(rsum));
763f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
764a30f8f8cSSatish Balay   }
7653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
766a30f8f8cSSatish Balay }
767a30f8f8cSSatish Balay 
76866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
769d71ae5a4SJacob Faibussowitsch {
770a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7711302d50aSBarry Smith   PetscInt      nstash, reallocs;
772a30f8f8cSSatish Balay 
773a30f8f8cSSatish Balay   PetscFunctionBegin;
7743ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
775a30f8f8cSSatish Balay 
7769566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7779566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7789566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7799566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7809566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7819566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
783a30f8f8cSSatish Balay }
784a30f8f8cSSatish Balay 
78566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
786d71ae5a4SJacob Faibussowitsch {
787a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
788a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
78913f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
790e44c0bd4SBarry Smith   PetscInt     *row, *col;
791c0edf612SJunchao Zhang   PetscBool     all_assembled;
79213f74950SBarry Smith   PetscMPIInt   n;
793ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
794a30f8f8cSSatish Balay   MatScalar    *val;
795a30f8f8cSSatish Balay 
79691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
797a30f8f8cSSatish Balay   PetscFunctionBegin;
7984cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
799a30f8f8cSSatish Balay     while (1) {
8009566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
801a30f8f8cSSatish Balay       if (!flg) break;
802a30f8f8cSSatish Balay 
803a30f8f8cSSatish Balay       for (i = 0; i < n;) {
804a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
80526fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
80626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
80726fbe8dcSKarl Rupp         }
808a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
809a30f8f8cSSatish Balay         else ncols = n - i;
810a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8119566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
812a30f8f8cSSatish Balay         i = j;
813a30f8f8cSSatish Balay       }
814a30f8f8cSSatish Balay     }
8159566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
816a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
8175e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
818a30f8f8cSSatish Balay        restore the original flags */
819a30f8f8cSSatish Balay     r1 = baij->roworiented;
820a30f8f8cSSatish Balay     r2 = a->roworiented;
82191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
82226fbe8dcSKarl Rupp 
823a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
824a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
82526fbe8dcSKarl Rupp 
826b638e6b4SJunchao Zhang     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworiented */
827a30f8f8cSSatish Balay     while (1) {
8289566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
829a30f8f8cSSatish Balay       if (!flg) break;
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay       for (i = 0; i < n;) {
832a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
83326fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
83426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
83526fbe8dcSKarl Rupp         }
836a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
837a30f8f8cSSatish Balay         else ncols = n - i;
8389566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
839a30f8f8cSSatish Balay         i = j;
840a30f8f8cSSatish Balay       }
841a30f8f8cSSatish Balay     }
8429566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
84326fbe8dcSKarl Rupp 
844a30f8f8cSSatish Balay     baij->roworiented = r1;
845a30f8f8cSSatish Balay     a->roworiented    = r2;
84626fbe8dcSKarl Rupp 
847b638e6b4SJunchao Zhang     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
848a30f8f8cSSatish Balay   }
849a30f8f8cSSatish Balay 
8509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
852a30f8f8cSSatish Balay 
853b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
8546aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
855a30f8f8cSSatish Balay   /*
856a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
857b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
858a30f8f8cSSatish Balay   */
859a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8605440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
861c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
862a30f8f8cSSatish Balay   }
863a30f8f8cSSatish Balay 
864ac530a7eSPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */
8659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
867a30f8f8cSSatish Balay 
8689566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
86926fbe8dcSKarl Rupp 
870f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8714f9cfa9eSBarry Smith 
8724f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
873f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
874e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
875462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
876e56f5c9eSBarry Smith   }
8773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
878a30f8f8cSSatish Balay }
879a30f8f8cSSatish Balay 
880dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8819804daf3SBarry Smith #include <petscdraw.h>
882d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
883d71ae5a4SJacob Faibussowitsch {
884a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
885d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8867da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
8879f196a02SMartin Diehl   PetscBool         isascii, isdraw;
888b0a32e0cSBarry Smith   PetscViewer       sviewer;
889f3ef73ceSBarry Smith   PetscViewerFormat format;
890a30f8f8cSSatish Balay 
891a30f8f8cSSatish Balay   PetscFunctionBegin;
8929f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
8939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
8949f196a02SMartin Diehl   if (isascii) {
8959566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
896456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
897a30f8f8cSSatish Balay       MatInfo info;
8989566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
8999566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9009566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9019371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
902835f2295SStefano Zampini                                                    mat->rmap->bs, info.memory));
9039566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9049566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9059566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9079566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9089566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9109566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9113ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
912fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9139566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
915c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9163ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
917a30f8f8cSSatish Balay     }
918a30f8f8cSSatish Balay   }
919a30f8f8cSSatish Balay 
920a30f8f8cSSatish Balay   if (isdraw) {
921b0a32e0cSBarry Smith     PetscDraw draw;
922ace3abfcSBarry Smith     PetscBool isnull;
9239566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9249566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9253ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
926a30f8f8cSSatish Balay   }
927a30f8f8cSSatish Balay 
9287da1fb6eSBarry Smith   {
929a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
930a30f8f8cSSatish Balay     Mat           A;
93165d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
93265d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
933d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
934a30f8f8cSSatish Balay     MatScalar    *a;
9353e219373SBarry Smith     const char   *matname;
936a30f8f8cSSatish Balay 
937f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9389566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
939dd400576SPatrick Sanan     if (rank == 0) {
9409566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
941a30f8f8cSSatish Balay     } else {
9429566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
943a30f8f8cSSatish Balay     }
9449566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9459566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9469566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
947a30f8f8cSSatish Balay 
948a30f8f8cSSatish Balay     /* copy over the A part */
94965d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9509371c9d4SSatish Balay     ai   = Aloc->i;
9519371c9d4SSatish Balay     aj   = Aloc->j;
9529371c9d4SSatish Balay     a    = Aloc->a;
9539566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
954a30f8f8cSSatish Balay 
955a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
956e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
95726fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
958a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
959e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
960a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9619566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
96226fbe8dcSKarl Rupp           col++;
96326fbe8dcSKarl Rupp           a += bs;
964a30f8f8cSSatish Balay         }
965a30f8f8cSSatish Balay       }
966a30f8f8cSSatish Balay     }
967a30f8f8cSSatish Balay     /* copy over the B part */
96865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9699371c9d4SSatish Balay     ai   = Bloc->i;
9709371c9d4SSatish Balay     aj   = Bloc->j;
9719371c9d4SSatish Balay     a    = Bloc->a;
972a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
973e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
97426fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
975a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
976a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
977a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9789566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
97926fbe8dcSKarl Rupp           col++;
98026fbe8dcSKarl Rupp           a += bs;
981a30f8f8cSSatish Balay         }
982a30f8f8cSSatish Balay       }
983a30f8f8cSSatish Balay     }
9849566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9859566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9869566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
987a30f8f8cSSatish Balay     /*
988a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
989b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
990a30f8f8cSSatish Balay     */
9919566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
99223a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
993dd400576SPatrick Sanan     if (rank == 0) {
994f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname));
995f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer));
996a30f8f8cSSatish Balay     }
9979566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9989566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
999a30f8f8cSSatish Balay   }
10003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1001a30f8f8cSSatish Balay }
1002a30f8f8cSSatish Balay 
1003618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1004618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1005d1654148SHong Zhang 
100666976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1007d71ae5a4SJacob Faibussowitsch {
10089f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
1009a30f8f8cSSatish Balay 
1010a30f8f8cSSatish Balay   PetscFunctionBegin;
10119f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
10129566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10139566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10149566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1015ac530a7eSPierre Jolivet   if (isascii || isdraw || issocket) PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
1016ac530a7eSPierre Jolivet   else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1018a30f8f8cSSatish Balay }
1019a30f8f8cSSatish Balay 
1020789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX)
1021789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1022d71ae5a4SJacob Faibussowitsch {
1023547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1024eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10256de40e93SBarry Smith   PetscScalar       *from;
10266de40e93SBarry Smith   const PetscScalar *x;
1027547795f9SHong Zhang 
1028547795f9SHong Zhang   PetscFunctionBegin;
1029547795f9SHong Zhang   /* diagonal part */
10309566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1031629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1032629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1033629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1034547795f9SHong Zhang 
1035547795f9SHong Zhang   /* subdiagonal part */
10365f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10379566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1038547795f9SHong Zhang 
1039547795f9SHong Zhang   /* copy x into the vec slvec0 */
10409566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10419566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1042547795f9SHong Zhang 
10439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1046547795f9SHong Zhang 
10479566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10489566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1049547795f9SHong Zhang   /* supperdiagonal part */
10509566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1052547795f9SHong Zhang }
1053789afff4SPierre Jolivet #endif
1054547795f9SHong Zhang 
105566976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1056d71ae5a4SJacob Faibussowitsch {
1057a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1058eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1059d9ca1df4SBarry Smith   PetscScalar       *from;
1060d9ca1df4SBarry Smith   const PetscScalar *x;
1061a9d4b620SHong Zhang 
1062a9d4b620SHong Zhang   PetscFunctionBegin;
1063a9d4b620SHong Zhang   /* diagonal part */
10649566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1065629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1066629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1067629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1068a9d4b620SHong Zhang 
1069a9d4b620SHong Zhang   /* subdiagonal part */
10709566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1071fc165ae2SBarry Smith 
1072a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10739566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10749566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1075a9d4b620SHong Zhang 
10769566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10779566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10789566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1079fc165ae2SBarry Smith 
10809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1082a9d4b620SHong Zhang   /* supperdiagonal part */
10839566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1085a9d4b620SHong Zhang }
1086a9d4b620SHong Zhang 
108766976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
108866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1089d71ae5a4SJacob Faibussowitsch {
1090eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1091eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1092629a200eSBarry Smith   PetscScalar       *from;
1093eb1ec7c1SStefano Zampini   const PetscScalar *x;
1094eb1ec7c1SStefano Zampini 
1095eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1096eb1ec7c1SStefano Zampini   /* diagonal part */
10979566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1098629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1099629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1100eb1ec7c1SStefano Zampini 
1101eb1ec7c1SStefano Zampini   /* subdiagonal part */
11025f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
11039566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1104eb1ec7c1SStefano Zampini 
1105eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11069566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11079566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11089566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11099566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1110eb1ec7c1SStefano Zampini 
11119566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11129566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11139566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1114eb1ec7c1SStefano Zampini 
1115eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11169566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1118eb1ec7c1SStefano Zampini }
111966976f2fSJacob Faibussowitsch #endif
1120eb1ec7c1SStefano Zampini 
112166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1122d71ae5a4SJacob Faibussowitsch {
1123de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1124d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1125629a200eSBarry Smith   PetscScalar       *from;
1126d9ca1df4SBarry Smith   const PetscScalar *x;
1127a9d4b620SHong Zhang 
1128a9d4b620SHong Zhang   PetscFunctionBegin;
1129a9d4b620SHong Zhang   /* diagonal part */
11309566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1131629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1132629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1133a9d4b620SHong Zhang 
1134a9d4b620SHong Zhang   /* subdiagonal part */
11359566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1136a9d4b620SHong Zhang 
1137a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11389566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11409566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1142a9d4b620SHong Zhang 
11439566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11459566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1146a9d4b620SHong Zhang 
1147a9d4b620SHong Zhang   /* supperdiagonal part */
11489566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1150a9d4b620SHong Zhang }
1151a9d4b620SHong Zhang 
1152a30f8f8cSSatish Balay /*
1153a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1154a30f8f8cSSatish Balay    diagonal block
1155a30f8f8cSSatish Balay */
115666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1157d71ae5a4SJacob Faibussowitsch {
1158a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1159a30f8f8cSSatish Balay 
1160a30f8f8cSSatish Balay   PetscFunctionBegin;
116108401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11629566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1164a30f8f8cSSatish Balay }
1165a30f8f8cSSatish Balay 
116666976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1167d71ae5a4SJacob Faibussowitsch {
1168a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1169a30f8f8cSSatish Balay 
1170a30f8f8cSSatish Balay   PetscFunctionBegin;
11719566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11729566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1174a30f8f8cSSatish Balay }
1175a30f8f8cSSatish Balay 
117666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1177d71ae5a4SJacob Faibussowitsch {
1178d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1179d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1180d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1181d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1182899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1183d0d4cfc2SHong Zhang 
1184a30f8f8cSSatish Balay   PetscFunctionBegin;
11855f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1186d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1187d0d4cfc2SHong Zhang 
1188d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1189d0d4cfc2SHong Zhang     /*
1190d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1191d0d4cfc2SHong Zhang     */
1192d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1193d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1194d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1195d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1196d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
119726fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1198d0d4cfc2SHong Zhang     }
11999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1200d0d4cfc2SHong Zhang   }
1201d0d4cfc2SHong Zhang 
12025f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1203d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1204d0d4cfc2SHong Zhang 
12059371c9d4SSatish Balay   pvA = &vworkA;
12069371c9d4SSatish Balay   pcA = &cworkA;
12079371c9d4SSatish Balay   pvB = &vworkB;
12089371c9d4SSatish Balay   pcB = &cworkB;
12099371c9d4SSatish Balay   if (!v) {
12109371c9d4SSatish Balay     pvA = NULL;
12119371c9d4SSatish Balay     pvB = NULL;
12129371c9d4SSatish Balay   }
12139371c9d4SSatish Balay   if (!idx) {
12149371c9d4SSatish Balay     pcA = NULL;
12159371c9d4SSatish Balay     if (!v) pcB = NULL;
12169371c9d4SSatish Balay   }
12179566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12189566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1219d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1220d0d4cfc2SHong Zhang 
1221d0d4cfc2SHong Zhang   cmap = mat->garray;
1222d0d4cfc2SHong Zhang   if (v || idx) {
1223d0d4cfc2SHong Zhang     if (nztot) {
1224d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1225d0d4cfc2SHong Zhang       PetscInt imark = -1;
1226d0d4cfc2SHong Zhang       if (v) {
1227d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1228d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1229d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1230d0d4cfc2SHong Zhang           else break;
1231d0d4cfc2SHong Zhang         }
1232d0d4cfc2SHong Zhang         imark = i;
1233d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1234d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1235d0d4cfc2SHong Zhang       }
1236d0d4cfc2SHong Zhang       if (idx) {
1237d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1238d0d4cfc2SHong Zhang         if (imark > -1) {
1239ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1240d0d4cfc2SHong Zhang         } else {
1241d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
124226fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1243d0d4cfc2SHong Zhang             else break;
1244d0d4cfc2SHong Zhang           }
1245d0d4cfc2SHong Zhang           imark = i;
1246d0d4cfc2SHong Zhang         }
1247d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1248d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1249d0d4cfc2SHong Zhang       }
1250d0d4cfc2SHong Zhang     } else {
1251f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1252f4259b30SLisandro Dalcin       if (v) *v = NULL;
1253d0d4cfc2SHong Zhang     }
1254d0d4cfc2SHong Zhang   }
1255d0d4cfc2SHong Zhang   *nz = nztot;
12569566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12579566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1259a30f8f8cSSatish Balay }
1260a30f8f8cSSatish Balay 
126166976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1262d71ae5a4SJacob Faibussowitsch {
1263a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1264a30f8f8cSSatish Balay 
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
12665f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1267a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1269a30f8f8cSSatish Balay }
1270a30f8f8cSSatish Balay 
127166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1272d71ae5a4SJacob Faibussowitsch {
1273d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1274d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1275d0d4cfc2SHong Zhang 
1276d0d4cfc2SHong Zhang   PetscFunctionBegin;
1277d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1279d0d4cfc2SHong Zhang }
128066976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1281d71ae5a4SJacob Faibussowitsch {
1282d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1283d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1284d0d4cfc2SHong Zhang 
1285d0d4cfc2SHong Zhang   PetscFunctionBegin;
1286d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
12873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1288d0d4cfc2SHong Zhang }
1289d0d4cfc2SHong Zhang 
129066976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1291d71ae5a4SJacob Faibussowitsch {
12925f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
12935f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
12942726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
12952726fb6dSPierre Jolivet 
12969566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
12979566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
12985f80ce2aSJacob Faibussowitsch   }
12993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13002726fb6dSPierre Jolivet }
13012726fb6dSPierre Jolivet 
130266976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1303d71ae5a4SJacob Faibussowitsch {
130499cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
130599cafbc1SBarry Smith 
130699cafbc1SBarry Smith   PetscFunctionBegin;
13079566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13089566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
131099cafbc1SBarry Smith }
131199cafbc1SBarry Smith 
131266976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1313d71ae5a4SJacob Faibussowitsch {
131499cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
131599cafbc1SBarry Smith 
131699cafbc1SBarry Smith   PetscFunctionBegin;
13179566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13189566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
132099cafbc1SBarry Smith }
132199cafbc1SBarry Smith 
13227dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
132336032a97SHong Zhang    Input: isrow       - distributed(parallel),
132436032a97SHong Zhang           iscol_local - locally owned (seq)
132536032a97SHong Zhang */
132666976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1327d71ae5a4SJacob Faibussowitsch {
13288f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13298f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
133036032a97SHong Zhang 
133136032a97SHong Zhang   PetscFunctionBegin;
133266976f2fSJacob Faibussowitsch   *flg = PETSC_FALSE;
13339566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13349566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
133566976f2fSJacob Faibussowitsch   if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13368f46ffcaSHong Zhang 
13379566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13398f46ffcaSHong Zhang 
13409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13449566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13459566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13468f46ffcaSHong Zhang 
13478f46ffcaSHong Zhang   nmatch = 0;
13488f46ffcaSHong Zhang   k      = 0;
13498f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13508f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13518f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13529371c9d4SSatish Balay         k = j;
13539371c9d4SSatish Balay         nmatch++;
13548f46ffcaSHong Zhang         break;
13558f46ffcaSHong Zhang       }
13568f46ffcaSHong Zhang     }
13578f46ffcaSHong Zhang   }
13589566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13599566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13609566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13619566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13621098a8e8SHong Zhang   if (nmatch < sz1) {
13631098a8e8SHong Zhang     *flg = PETSC_FALSE;
13641098a8e8SHong Zhang   } else {
13651098a8e8SHong Zhang     *flg = PETSC_TRUE;
13661098a8e8SHong Zhang   }
13673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13688f46ffcaSHong Zhang }
136936032a97SHong Zhang 
137066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1371d71ae5a4SJacob Faibussowitsch {
1372fdfbdca6SPierre Jolivet   Mat       C[2];
1373fdfbdca6SPierre Jolivet   IS        iscol_local, isrow_local;
1374fdfbdca6SPierre Jolivet   PetscInt  csize, csize_local, rsize;
1375fdfbdca6SPierre Jolivet   PetscBool isequal, issorted, isidentity = PETSC_FALSE;
137636032a97SHong Zhang 
137736032a97SHong Zhang   PetscFunctionBegin;
13789566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1379fdfbdca6SPierre Jolivet   PetscCall(ISGetLocalSize(isrow, &rsize));
138036032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13819566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13825f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
138336032a97SHong Zhang   } else {
13849566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
13859566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
1386fdfbdca6SPierre Jolivet     PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
13878f46ffcaSHong Zhang   }
1388fdfbdca6SPierre Jolivet   PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1389fdfbdca6SPierre Jolivet   if (!isequal) {
1390fdfbdca6SPierre Jolivet     PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1391fdfbdca6SPierre Jolivet     isidentity = (PetscBool)(mat->cmap->N == csize_local);
1392fdfbdca6SPierre Jolivet     if (!isidentity) {
1393fdfbdca6SPierre Jolivet       if (call == MAT_REUSE_MATRIX) {
1394fdfbdca6SPierre Jolivet         PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1395fdfbdca6SPierre Jolivet         PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1396fdfbdca6SPierre Jolivet       } else {
1397fdfbdca6SPierre Jolivet         PetscCall(ISAllGather(isrow, &isrow_local));
1398fdfbdca6SPierre Jolivet         PetscCall(ISSorted(isrow_local, &issorted));
1399fdfbdca6SPierre Jolivet         PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1400fdfbdca6SPierre Jolivet       }
1401fdfbdca6SPierre Jolivet     }
1402fdfbdca6SPierre Jolivet   }
14037dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
1404fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1405fdfbdca6SPierre Jolivet   if (!isequal && !isidentity) {
14068f46ffcaSHong Zhang     if (call == MAT_INITIAL_MATRIX) {
1407fdfbdca6SPierre Jolivet       IS       intersect;
1408fdfbdca6SPierre Jolivet       PetscInt ni;
1409fdfbdca6SPierre Jolivet 
1410fdfbdca6SPierre Jolivet       PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1411fdfbdca6SPierre Jolivet       PetscCall(ISGetLocalSize(intersect, &ni));
1412fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&intersect));
1413fdfbdca6SPierre Jolivet       PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1414fdfbdca6SPierre Jolivet     }
1415fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1416fdfbdca6SPierre Jolivet     PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1417fdfbdca6SPierre Jolivet     PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1418fdfbdca6SPierre Jolivet     if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1419fdfbdca6SPierre Jolivet     else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1420fdfbdca6SPierre Jolivet     else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1421fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C));
1422fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C + 1));
1423fdfbdca6SPierre Jolivet   }
1424fdfbdca6SPierre Jolivet   if (call == MAT_INITIAL_MATRIX) {
1425fdfbdca6SPierre Jolivet     if (!isequal && !isidentity) {
1426fdfbdca6SPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1427fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&isrow_local));
1428fdfbdca6SPierre Jolivet     }
14299566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14309566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14318f46ffcaSHong Zhang   }
14323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14338f46ffcaSHong Zhang }
14348f46ffcaSHong Zhang 
143566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1436d71ae5a4SJacob Faibussowitsch {
1437a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1438a30f8f8cSSatish Balay 
1439a30f8f8cSSatish Balay   PetscFunctionBegin;
14409566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14419566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1443a30f8f8cSSatish Balay }
1444a30f8f8cSSatish Balay 
144566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1446d71ae5a4SJacob Faibussowitsch {
1447a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1448a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14493966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1450a30f8f8cSSatish Balay 
1451a30f8f8cSSatish Balay   PetscFunctionBegin;
1452d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
145326fbe8dcSKarl Rupp 
14549566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
145526fbe8dcSKarl Rupp 
14569371c9d4SSatish Balay   isend[0] = info->nz_used;
14579371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14589371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14599371c9d4SSatish Balay   isend[3] = info->memory;
14609371c9d4SSatish Balay   isend[4] = info->mallocs;
146126fbe8dcSKarl Rupp 
14629566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
146326fbe8dcSKarl Rupp 
14649371c9d4SSatish Balay   isend[0] += info->nz_used;
14659371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14669371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14679371c9d4SSatish Balay   isend[3] += info->memory;
14689371c9d4SSatish Balay   isend[4] += info->mallocs;
1469a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1470a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1471a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1472a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1473a30f8f8cSSatish Balay     info->memory       = isend[3];
1474a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1475a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1476462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
147726fbe8dcSKarl Rupp 
1478a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1479a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1480a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1481a30f8f8cSSatish Balay     info->memory       = irecv[3];
1482a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1483a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1484462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
148526fbe8dcSKarl Rupp 
1486a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1487a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1488a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1489a30f8f8cSSatish Balay     info->memory       = irecv[3];
1490a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
149198921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1492a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1493a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1494a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
14953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1496a30f8f8cSSatish Balay }
1497a30f8f8cSSatish Balay 
149866976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1499d71ae5a4SJacob Faibussowitsch {
1500a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1501d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1502a30f8f8cSSatish Balay 
1503a30f8f8cSSatish Balay   PetscFunctionBegin;
1504e98b92d7SKris Buschelman   switch (op) {
1505512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1506e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
150728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1508a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1509e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
151043674050SBarry Smith     MatCheckPreallocated(A, 1);
15119566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15129566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1513e98b92d7SKris Buschelman     break;
1514e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
151543674050SBarry Smith     MatCheckPreallocated(A, 1);
15164e0d8c25SBarry Smith     a->roworiented = flg;
151726fbe8dcSKarl Rupp 
15189566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15199566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1520e98b92d7SKris Buschelman     break;
1521d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1522d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1523d71ae5a4SJacob Faibussowitsch     break;
1524d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1525d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1526d71ae5a4SJacob Faibussowitsch     break;
1527d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
15289725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
15290f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1530eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1531547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1532eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1533eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1534eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1535b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1536eb1ec7c1SStefano Zampini     }
15370f2140c7SStefano Zampini #endif
1538eeffb40dSHong Zhang     break;
1539ffa07934SHong Zhang   case MAT_SPD:
1540d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
15419725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1542eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1543eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1544eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1545eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1546eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1547eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1548eb1ec7c1SStefano Zampini     }
1549eb1ec7c1SStefano Zampini #endif
1550eeffb40dSHong Zhang     break;
155177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15529725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1553eeffb40dSHong Zhang     break;
1554d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1555d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1556d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1557d71ae5a4SJacob Faibussowitsch     break;
1558d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1559d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1560d71ae5a4SJacob Faibussowitsch     break;
1561d71ae5a4SJacob Faibussowitsch   default:
1562888c827cSStefano Zampini     break;
1563a30f8f8cSSatish Balay   }
15643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1565a30f8f8cSSatish Balay }
1566a30f8f8cSSatish Balay 
156766976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1568d71ae5a4SJacob Faibussowitsch {
1569a30f8f8cSSatish Balay   PetscFunctionBegin;
15707fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1571cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15729566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1573cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15749566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1575fc4dec0aSBarry Smith   }
15763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1577a30f8f8cSSatish Balay }
1578a30f8f8cSSatish Balay 
157966976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1580d71ae5a4SJacob Faibussowitsch {
1581a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1582a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
15835e90f9d9SHong Zhang   PetscInt      nv, m, n;
1584ace3abfcSBarry Smith   PetscBool     flg;
1585a30f8f8cSSatish Balay 
1586a30f8f8cSSatish Balay   PetscFunctionBegin;
1587a30f8f8cSSatish Balay   if (ll != rr) {
15889566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
15895f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1590a30f8f8cSSatish Balay   }
15913ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1592b3bf805bSHong Zhang 
15939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
15945f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1595b3bf805bSHong Zhang 
15969566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
15975f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
15985e90f9d9SHong Zhang 
15999566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
16005e90f9d9SHong Zhang 
16015e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1602dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16035e90f9d9SHong Zhang 
16045e90f9d9SHong Zhang   /* scale the diagonal part */
1605dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1606a30f8f8cSSatish Balay 
16075e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
16089566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1609dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611a30f8f8cSSatish Balay }
1612a30f8f8cSSatish Balay 
161366976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1614d71ae5a4SJacob Faibussowitsch {
1615f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1616a30f8f8cSSatish Balay 
1617a30f8f8cSSatish Balay   PetscFunctionBegin;
16189566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1620a30f8f8cSSatish Balay }
1621a30f8f8cSSatish Balay 
16226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1623a30f8f8cSSatish Balay 
162466976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1625d71ae5a4SJacob Faibussowitsch {
1626a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1627a30f8f8cSSatish Balay   Mat           a, b, c, d;
1628ace3abfcSBarry Smith   PetscBool     flg;
1629a30f8f8cSSatish Balay 
1630a30f8f8cSSatish Balay   PetscFunctionBegin;
16319371c9d4SSatish Balay   a = matA->A;
16329371c9d4SSatish Balay   b = matA->B;
16339371c9d4SSatish Balay   c = matB->A;
16349371c9d4SSatish Balay   d = matB->B;
1635a30f8f8cSSatish Balay 
16369566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
163748a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
16385440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1640a30f8f8cSSatish Balay }
1641a30f8f8cSSatish Balay 
164266976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1643d71ae5a4SJacob Faibussowitsch {
16444c7a3774SStefano Zampini   PetscBool isbaij;
16453c896bc6SHong Zhang 
16463c896bc6SHong Zhang   PetscFunctionBegin;
16479566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16485f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16493c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16503c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16519566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16529566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16539566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16543c896bc6SHong Zhang   } else {
16554c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16564c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16574c7a3774SStefano Zampini 
16589566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16599566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16603c896bc6SHong Zhang   }
16619566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16633c896bc6SHong Zhang }
16643c896bc6SHong Zhang 
166566976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1666d71ae5a4SJacob Faibussowitsch {
16674fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16684fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16694fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16704fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16714fe895cdSHong Zhang 
16724fe895cdSHong Zhang   PetscFunctionBegin;
16734fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16744fe895cdSHong Zhang     PetscScalar alpha = a;
16754fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16764fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
16779566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1678792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16794fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
16804fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
16819566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1682792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16839566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1684ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16859566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16869566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16884fe895cdSHong Zhang   } else {
16894de5dceeSHong Zhang     Mat       B;
16904de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16915f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16929566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16939566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16949566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16959566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
16969566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
16979566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
16989566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
16999566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
17009566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
17019566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
17029566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
17039566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
17049566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
17059566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
17069566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
17079566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
17089566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
17099566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
17104fe895cdSHong Zhang   }
17113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17124fe895cdSHong Zhang }
17134fe895cdSHong Zhang 
171466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1715d71ae5a4SJacob Faibussowitsch {
17161302d50aSBarry Smith   PetscInt  i;
1717afebec48SHong Zhang   PetscBool flg;
1718a5e6ed63SBarry Smith 
17196849ba73SBarry Smith   PetscFunctionBegin;
17209566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1721a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17229566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
172348a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17244dcd73b1SHong Zhang   }
17253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1726a5e6ed63SBarry Smith }
1727a5e6ed63SBarry Smith 
172866976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1729d71ae5a4SJacob Faibussowitsch {
17307d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17316f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17327d68702bSBarry Smith 
17337d68702bSBarry Smith   PetscFunctionBegin;
17346f33a894SBarry Smith   if (!Y->preallocated) {
17359566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17366f33a894SBarry Smith   } else if (!aij->nz) {
1737b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17389566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1739b83222d8SBarry Smith     aij->nonew = nonew;
17407d68702bSBarry Smith   }
17419566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17437d68702bSBarry Smith }
17447d68702bSBarry Smith 
174566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1746d71ae5a4SJacob Faibussowitsch {
1747a5b7ff6bSBarry Smith   PetscFunctionBegin;
1748a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1750a5b7ff6bSBarry Smith }
17513b49f96aSBarry Smith 
175217ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
175317ea310bSPierre Jolivet {
175417ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
175517ea310bSPierre Jolivet 
175617ea310bSPierre Jolivet   PetscFunctionBegin;
175717ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
175817ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
175917ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
176017ea310bSPierre Jolivet }
176117ea310bSPierre Jolivet 
17626cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer);
1763789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]);
1764789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
17656cff0a6bSPierre Jolivet 
17663964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1767a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1768a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1769a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
177097304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1771431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1772431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1773f4259b30SLisandro Dalcin                                        NULL,
1774f4259b30SLisandro Dalcin                                        NULL,
1775f4259b30SLisandro Dalcin                                        NULL,
1776f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1777f4259b30SLisandro Dalcin                                        NULL,
1778f4259b30SLisandro Dalcin                                        NULL,
177941f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1780a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
178197304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1782a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1783a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1784a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1785a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
178697304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1787a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1788a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1789a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1790f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1791f4259b30SLisandro Dalcin                                        NULL,
1792f4259b30SLisandro Dalcin                                        NULL,
1793f4259b30SLisandro Dalcin                                        NULL,
1794f4259b30SLisandro Dalcin                                        NULL,
179526cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1796f4259b30SLisandro Dalcin                                        NULL,
1797f4259b30SLisandro Dalcin                                        NULL,
1798a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1799f4259b30SLisandro Dalcin                                        NULL,
1800d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1801f4259b30SLisandro Dalcin                                        NULL,
1802f4259b30SLisandro Dalcin                                        NULL,
1803f4259b30SLisandro Dalcin                                        NULL,
1804f4259b30SLisandro Dalcin                                        NULL,
1805d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
18067dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1807d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1808a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18093c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1810f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1811a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18127d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1813f4259b30SLisandro Dalcin                                        NULL,
1814f4259b30SLisandro Dalcin                                        NULL,
1815f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819f4259b30SLisandro Dalcin                                        NULL,
1820f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1823f4259b30SLisandro Dalcin                                        NULL,
1824a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18257dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
18348bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPISBAIJ,
18358bb0f5c6SPierre Jolivet                                        /* 69*/ NULL,
183628d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839f4259b30SLisandro Dalcin                                        NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
18445bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
18458bb0f5c6SPierre Jolivet                                        /* 79*/ NULL,
18468bb0f5c6SPierre Jolivet                                        NULL,
18478bb0f5c6SPierre Jolivet                                        NULL,
18488bb0f5c6SPierre Jolivet                                        NULL,
18498bb0f5c6SPierre Jolivet                                        NULL,
1850f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
18598bb0f5c6SPierre Jolivet                                        MatConjugate_MPISBAIJ,
1860f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
186299cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1863d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1864d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
18658bb0f5c6SPierre Jolivet                                        /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ,
18668bb0f5c6SPierre Jolivet                                        NULL,
18678bb0f5c6SPierre Jolivet                                        NULL,
18688bb0f5c6SPierre Jolivet                                        NULL,
18698bb0f5c6SPierre Jolivet                                        NULL,
1870421480d9SBarry Smith                                        /*104*/ NULL,
18718bb0f5c6SPierre Jolivet                                        NULL,
18728bb0f5c6SPierre Jolivet                                        NULL,
18738bb0f5c6SPierre Jolivet                                        NULL,
18748bb0f5c6SPierre Jolivet                                        NULL,
1875f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
18798bb0f5c6SPierre Jolivet                                        NULL,
1880f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
18928bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_Default,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895421480d9SBarry Smith                                        /*129*/ NULL,
18968bb0f5c6SPierre Jolivet                                        MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
1899421480d9SBarry Smith                                        NULL,
1900f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902eede4a3fSMark Adams                                        MatEliminateZeros_MPISBAIJ,
19034cc2b5b5SPierre Jolivet                                        NULL,
190442ce410bSJunchao Zhang                                        NULL,
1905421480d9SBarry Smith                                        /*139*/ NULL,
190642ce410bSJunchao Zhang                                        NULL,
190703db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
1908c2be7ffeSStefano Zampini                                        NULL,
190903db1824SAlex Lindsay                                        NULL};
1910a30f8f8cSSatish Balay 
191166976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1912d71ae5a4SJacob Faibussowitsch {
1913476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1914535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19155d2a9ed1SStefano Zampini   PetscMPIInt   size;
1916a23d5eceSKris Buschelman 
1917a23d5eceSKris Buschelman   PetscFunctionBegin;
1918ad79cf63SBarry Smith   if (B->hash_active) {
1919aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1920ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1921ad79cf63SBarry Smith   }
1922ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
192358b7e2c1SStefano Zampini   PetscCall(MatSetBlockSize(B, bs));
19249566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19275f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19285f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1929899cda47SBarry Smith 
1930d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1931d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19325f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1933a23d5eceSKris Buschelman 
1934d0f46423SBarry Smith   B->rmap->bs = bs;
1935a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1936a23d5eceSKris Buschelman   b->mbs      = mbs;
1937a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1938de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1939de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1940a23d5eceSKris Buschelman 
1941ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1942d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1943d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1944a23d5eceSKris Buschelman 
1945d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1946d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1947a23d5eceSKris Buschelman 
1948cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1949eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
1950cb7b82ddSBarry Smith #else
19519566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1952cb7b82ddSBarry Smith #endif
19539566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
19549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
19559566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
19569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
19579566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
19589566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
19599566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
19609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
19619566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1962cb7b82ddSBarry Smith 
19639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
1964c508b908SBarry Smith 
1965c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
19669566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19679566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
19689566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
19699566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
1970c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
1971cb7b82ddSBarry Smith 
1972c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
1973ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
19749566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
19759566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
19769566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
1977c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
1978a23d5eceSKris Buschelman 
19799566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
19809566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
198126fbe8dcSKarl Rupp 
1982526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
1983cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
1984cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
19853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1986a23d5eceSKris Buschelman }
1987a23d5eceSKris Buschelman 
198866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
1989d71ae5a4SJacob Faibussowitsch {
199002106b30SBarry Smith   PetscInt        m, rstart, cend;
1991f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
1992f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
1993f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
1994bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
19953bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
1996dfb205c3SBarry Smith 
1997dfb205c3SBarry Smith   PetscFunctionBegin;
19985f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
19999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
20009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
20019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
20029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
20039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2004dfb205c3SBarry Smith   m      = B->rmap->n / bs;
2005dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
2006dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
2007dfb205c3SBarry Smith 
20085f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
20099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2010dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2011dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20125f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20134cf0e950SBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */
2014dfb205c3SBarry Smith     JJ = jj + ii[i];
20150cd7f59aSBarry Smith     bd = 0;
2016dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20170cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2018dfb205c3SBarry Smith       JJ++;
20190cd7f59aSBarry Smith       bd++;
2020dfb205c3SBarry Smith     }
2021dfb205c3SBarry Smith     d = 0;
2022dfb205c3SBarry Smith     for (; j < nz; j++) {
2023dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2024dfb205c3SBarry Smith       d++;
2025dfb205c3SBarry Smith     }
2026dfb205c3SBarry Smith     d_nnz[i] = d;
20270cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20280cd7f59aSBarry Smith     nz       = nz - bd;
20290cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2030dfb205c3SBarry Smith   }
20319566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20329566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20339566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2034dfb205c3SBarry Smith 
2035dfb205c3SBarry Smith   values = (PetscScalar *)V;
203648a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2037dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2038dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2039dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2040dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2041bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2042dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20439566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2044bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2045bb80cfbbSStefano Zampini       PetscInt j;
20460cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
20470cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20489566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20490cd7f59aSBarry Smith       }
20500cd7f59aSBarry Smith     }
2051dfb205c3SBarry Smith   }
2052dfb205c3SBarry Smith 
20539566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
20543bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20553bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
20569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
20579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
20583bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20593bd0feecSPierre Jolivet 
20609566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
20613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2062dfb205c3SBarry Smith }
2063dfb205c3SBarry Smith 
20640bad9183SKris Buschelman /*MC
2065fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2066828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2067828413b8SBarry Smith    the matrix is stored.
2068828413b8SBarry Smith 
2069828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
207011a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
20710bad9183SKris Buschelman 
20722ef1f0ffSBarry Smith    Options Database Key:
207311a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
20740bad9183SKris Buschelman 
20752ef1f0ffSBarry Smith    Level: beginner
20762ef1f0ffSBarry Smith 
207711a5261eSBarry Smith    Note:
2078476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2079476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2080476417e5SBarry Smith 
20811cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20820bad9183SKris Buschelman M*/
20830bad9183SKris Buschelman 
2084d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2085d71ae5a4SJacob Faibussowitsch {
2086b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
208794ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2088b5df2d14SHong Zhang 
2089b5df2d14SHong Zhang   PetscFunctionBegin;
20904dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2091b0a32e0cSBarry Smith   B->data   = (void *)b;
2092aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2093b5df2d14SHong Zhang 
2094b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2095b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2096b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2097b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
209826fbe8dcSKarl Rupp 
20999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
21009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2101b5df2d14SHong Zhang 
2102b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2104b5df2d14SHong Zhang 
2105b5df2d14SHong Zhang   /* build cache for off array entries formed */
21069566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
210726fbe8dcSKarl Rupp 
2108b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21090298fd71SBarry Smith   b->colmap      = NULL;
21100298fd71SBarry Smith   b->garray      = NULL;
2111b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2112b5df2d14SHong Zhang 
2113b5df2d14SHong Zhang   /* stuff used in block assembly */
2114f4259b30SLisandro Dalcin   b->barray = NULL;
2115b5df2d14SHong Zhang 
2116b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2117f4259b30SLisandro Dalcin   b->lvec    = NULL;
2118f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2119f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2120f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2121f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2122f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2123f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2124f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2125b5df2d14SHong Zhang 
2126b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2127f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2128f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2129b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2130b5df2d14SHong Zhang 
2131b5df2d14SHong Zhang   /* hash table stuff */
2132f4259b30SLisandro Dalcin   b->ht           = NULL;
2133f4259b30SLisandro Dalcin   b->hd           = NULL;
2134b5df2d14SHong Zhang   b->ht_size      = 0;
2135b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2136b5df2d14SHong Zhang   b->ht_fact      = 0;
2137b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2138b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2139b5df2d14SHong Zhang 
21407dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21417a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21427a868f3eSHong Zhang 
2143f4259b30SLisandro Dalcin   b->in_loc = NULL;
2144f4259b30SLisandro Dalcin   b->v_loc  = NULL;
214559ffdab8SBarry Smith   b->n_loc  = 0;
214694ae4db5SBarry Smith 
21479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
21536214f412SHong Zhang #endif
2154d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
21559566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2156d24d4204SJose E. Roman #endif
21579566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
21589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2159aa5a9175SDahai Guo 
2160b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2161b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2162b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2163b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2164eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2165b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2166eb1ec7c1SStefano Zampini #else
2167b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2168eb1ec7c1SStefano Zampini #endif
216913647f61SHong Zhang 
21709566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2171d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
21729566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
217394ae4db5SBarry Smith   if (flg) {
217494ae4db5SBarry Smith     PetscReal fact = 1.39;
21759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
21769566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
217794ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21789566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
21799566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
218094ae4db5SBarry Smith   }
2181d0609cedSBarry Smith   PetscOptionsEnd();
21823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2183b5df2d14SHong Zhang }
2184b5df2d14SHong Zhang 
21852920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2186209238afSKris Buschelman /*MC
2187002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2188209238afSKris Buschelman 
218911a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
219011a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2191209238afSKris Buschelman 
219211a5261eSBarry Smith    Options Database Key:
2193c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2194209238afSKris Buschelman 
2195209238afSKris Buschelman   Level: beginner
2196209238afSKris Buschelman 
21971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2198209238afSKris Buschelman M*/
2199209238afSKris Buschelman 
22005d83a8b1SBarry Smith /*@
2201b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2202b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2203b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2204b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2205b5df2d14SHong Zhang 
2206c3339decSBarry Smith   Collective
2207b5df2d14SHong Zhang 
2208b5df2d14SHong Zhang   Input Parameters:
22091c4f3114SJed Brown + B     - the matrix
2210bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2211bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2212b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2213b5df2d14SHong Zhang           submatrix  (same for all local rows)
2214b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22156d10fdaeSSatish Balay           in the upper triangular and diagonal part of the in diagonal portion of the local
22162ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
221795742e49SBarry Smith           for the diagonal entry and set a value even if it is zero.
2218b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2219b5df2d14SHong Zhang           submatrix (same for all local rows).
2220b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2221c2fc9fa9SBarry Smith           off-diagonal portion of the local submatrix that is right of the diagonal
22222ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.
2223b5df2d14SHong Zhang 
2224b5df2d14SHong Zhang   Options Database Keys:
2225a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2226b5df2d14SHong Zhang                     block calculations (much slower)
2227a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2228b5df2d14SHong Zhang 
22292ef1f0ffSBarry Smith   Level: intermediate
22302ef1f0ffSBarry Smith 
2231b5df2d14SHong Zhang   Notes:
2232b5df2d14SHong Zhang 
223311a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2234b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2235b5df2d14SHong Zhang 
223649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
223749a6f317SBarry Smith 
2238b5df2d14SHong Zhang   Storage Information:
2239b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2240b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2241b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2242b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2243b5df2d14SHong Zhang 
2244b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
22452ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
22462ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2247b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
22482ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2249b5df2d14SHong Zhang 
225011a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2251aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22522ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2253aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2254aa95bbe8SBarry Smith 
2255b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2256b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2257b5df2d14SHong Zhang 
2258b5df2d14SHong Zhang .vb
2259b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2260a4b1a0f6SJed Brown           --------------------------
2261c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2262c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2263c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2264a4b1a0f6SJed Brown           --------------------------
2265b5df2d14SHong Zhang .ve
2266b5df2d14SHong Zhang 
2267b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2268b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
22696d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
227011a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2271b5df2d14SHong Zhang 
22722ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
22736d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
22742ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2275c2fc9fa9SBarry Smith 
2276b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
22772ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2278b5df2d14SHong Zhang 
22791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2280b5df2d14SHong Zhang @*/
2281d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2282d71ae5a4SJacob Faibussowitsch {
2283b5df2d14SHong Zhang   PetscFunctionBegin;
22846ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
22856ba663aaSJed Brown   PetscValidType(B, 1);
22866ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2287cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
22883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2289b5df2d14SHong Zhang }
2290b5df2d14SHong Zhang 
22912920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
22925d83a8b1SBarry Smith /*@
229311a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2294a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2295a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
229620f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2297a30f8f8cSSatish Balay 
2298d083f849SBarry Smith   Collective
2299a30f8f8cSSatish Balay 
2300a30f8f8cSSatish Balay   Input Parameters:
2301a30f8f8cSSatish Balay + comm  - MPI communicator
230211a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
230320f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
230420f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2305a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2306a30f8f8cSSatish Balay           y vector for the matrix-vector product y = Ax.
230720f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2308a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2309a30f8f8cSSatish Balay           x vector for the matrix-vector product y = Ax.
231020f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
231120f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2312a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2313a30f8f8cSSatish Balay           submatrix (same for all local rows)
2314a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23156d10fdaeSSatish Balay           in the upper triangular portion of the in diagonal portion of the local
23162ef1f0ffSBarry Smith           (possibly different for each block block row) or `NULL`.
231795742e49SBarry Smith           If you plan to factor the matrix you must leave room for the diagonal entry and
231895742e49SBarry Smith           set its value even if it is zero.
2319a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2320a30f8f8cSSatish Balay           submatrix (same for all local rows).
2321a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2322a30f8f8cSSatish Balay           off-diagonal portion of the local submatrix (possibly different for
23232ef1f0ffSBarry Smith           each block row) or `NULL`.
2324a30f8f8cSSatish Balay 
2325a30f8f8cSSatish Balay   Output Parameter:
2326a30f8f8cSSatish Balay . A - the matrix
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay   Options Database Keys:
2329a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2330a30f8f8cSSatish Balay                     block calculations (much slower)
2331a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2332a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2333a30f8f8cSSatish Balay                     (defaults to using SeqBAIJ format on one processor)
2334a30f8f8cSSatish Balay 
23352ef1f0ffSBarry Smith   Level: intermediate
23362ef1f0ffSBarry Smith 
23372ef1f0ffSBarry Smith   Notes:
233877433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2339f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
234011a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2341175b88e8SBarry Smith 
2342d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
23436d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2344d1be2dadSMatthew Knepley 
2345a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2346a30f8f8cSSatish Balay   (possibly both).
2347a30f8f8cSSatish Balay 
234811a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2349a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2350a30f8f8cSSatish Balay 
2351727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by
2352727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
2353727bdf9bSBarry Smith 
235449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
235549a6f317SBarry Smith 
2356a30f8f8cSSatish Balay   Storage Information:
2357a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2358a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2359a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2360a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2361a30f8f8cSSatish Balay 
2362a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
23632ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
23642ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2365a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
23662ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2367a30f8f8cSSatish Balay 
2368a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2369a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2370a30f8f8cSSatish Balay 
2371a30f8f8cSSatish Balay .vb
2372a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2373a4b1a0f6SJed Brown           --------------------------
2374c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2375c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2376c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2377a4b1a0f6SJed Brown           --------------------------
2378a30f8f8cSSatish Balay .ve
2379a30f8f8cSSatish Balay 
2380a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2381a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
23826d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
23832ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2384a30f8f8cSSatish Balay 
23852ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23866d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
23872ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2388a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
23892ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2390a30f8f8cSSatish Balay 
2391727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`,
2392727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
2393a30f8f8cSSatish Balay @*/
2394d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2395d71ae5a4SJacob Faibussowitsch {
23961302d50aSBarry Smith   PetscMPIInt size;
2397a30f8f8cSSatish Balay 
2398a30f8f8cSSatish Balay   PetscFunctionBegin;
23999566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24009566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
24019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2402273d9f13SBarry Smith   if (size > 1) {
24039566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
24049566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2405273d9f13SBarry Smith   } else {
24069566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
24079566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2408273d9f13SBarry Smith   }
24093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2410a30f8f8cSSatish Balay }
2411a30f8f8cSSatish Balay 
2412d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2413d71ae5a4SJacob Faibussowitsch {
2414a30f8f8cSSatish Balay   Mat           mat;
2415a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2416d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2417387bc808SHong Zhang   PetscScalar  *array;
2418a30f8f8cSSatish Balay 
2419a30f8f8cSSatish Balay   PetscFunctionBegin;
2420f4259b30SLisandro Dalcin   *newmat = NULL;
242126fbe8dcSKarl Rupp 
24229566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24249566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24269566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2427e1b6402fSHong Zhang 
2428420957c1SBarry Smith   if (matin->hash_active) {
2429420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2430420957c1SBarry Smith   } else {
2431d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
2432273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
243382327fa8SHong Zhang     mat->assembled    = PETSC_TRUE;
24347fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
24357fff6886SHong Zhang 
2436b5df2d14SHong Zhang     a      = (Mat_MPISBAIJ *)mat->data;
2437a30f8f8cSSatish Balay     a->bs2 = oldmat->bs2;
2438a30f8f8cSSatish Balay     a->mbs = oldmat->mbs;
2439a30f8f8cSSatish Balay     a->nbs = oldmat->nbs;
2440a30f8f8cSSatish Balay     a->Mbs = oldmat->Mbs;
2441a30f8f8cSSatish Balay     a->Nbs = oldmat->Nbs;
2442a30f8f8cSSatish Balay 
2443a30f8f8cSSatish Balay     a->size         = oldmat->size;
2444a30f8f8cSSatish Balay     a->rank         = oldmat->rank;
2445a30f8f8cSSatish Balay     a->donotstash   = oldmat->donotstash;
2446a30f8f8cSSatish Balay     a->roworiented  = oldmat->roworiented;
2447f4259b30SLisandro Dalcin     a->rowindices   = NULL;
2448f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
2449a30f8f8cSSatish Balay     a->getrowactive = PETSC_FALSE;
2450f4259b30SLisandro Dalcin     a->barray       = NULL;
2451899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
2452899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
2453899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
2454899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
2455a30f8f8cSSatish Balay 
2456a30f8f8cSSatish Balay     /* hash table stuff */
2457f4259b30SLisandro Dalcin     a->ht           = NULL;
2458f4259b30SLisandro Dalcin     a->hd           = NULL;
2459a30f8f8cSSatish Balay     a->ht_size      = 0;
2460a30f8f8cSSatish Balay     a->ht_flag      = oldmat->ht_flag;
2461a30f8f8cSSatish Balay     a->ht_fact      = oldmat->ht_fact;
2462a30f8f8cSSatish Balay     a->ht_total_ct  = 0;
2463a30f8f8cSSatish Balay     a->ht_insert_ct = 0;
2464a30f8f8cSSatish Balay 
24659566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2466a30f8f8cSSatish Balay     if (oldmat->colmap) {
2467a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2468eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2469a30f8f8cSSatish Balay #else
24709566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
24719566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2472a30f8f8cSSatish Balay #endif
2473f4259b30SLisandro Dalcin     } else a->colmap = NULL;
2474387bc808SHong Zhang 
2475f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
24769566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
24779566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2478f4259b30SLisandro Dalcin     } else a->garray = NULL;
2479a30f8f8cSSatish Balay 
24809566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
24819566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
24829566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
248382327fa8SHong Zhang 
24849566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
24859566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2486387bc808SHong Zhang 
24879566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(a->slvec1, &nt));
24889566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec1, &array));
24899566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
24909566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
24919566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec1, &array));
24929566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec0, &array));
24939566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
24949566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec0, &array));
2495387bc808SHong Zhang 
2496387bc808SHong Zhang     /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
24979566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2498387bc808SHong Zhang     a->sMvctx = oldmat->sMvctx;
249982327fa8SHong Zhang 
25009566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
25019566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
2502420957c1SBarry Smith   }
25039566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2504a30f8f8cSSatish Balay   *newmat = mat;
25053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2506a30f8f8cSSatish Balay }
2507a30f8f8cSSatish Balay 
2508618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2509618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2510618cc2edSLisandro Dalcin 
25116cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2512d71ae5a4SJacob Faibussowitsch {
25137f489da9SVaclav Hapla   PetscBool isbinary;
251495936485SShri Abhyankar 
251595936485SShri Abhyankar   PetscFunctionBegin;
25169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25175f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25189566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
252095936485SShri Abhyankar }
252195936485SShri Abhyankar 
2522789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2523d71ae5a4SJacob Faibussowitsch {
252424d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2525f4f49eeaSPierre Jolivet   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)a->B->data;
2526ca54ac64SHong Zhang   PetscReal     atmp;
252787828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25281302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25291302d50aSBarry Smith   PetscMPIInt   rank, size;
25306497c311SBarry Smith   PetscInt     *rowners_bs, count, source;
253187828ca2SBarry Smith   PetscScalar  *va;
25328a1c53f2SBarry Smith   MatScalar    *ba;
2533f4c0e9e4SHong Zhang   MPI_Status    stat;
253424d5174aSHong Zhang 
253524d5174aSHong Zhang   PetscFunctionBegin;
25365f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25379566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2539f4c0e9e4SHong Zhang 
25409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2542f4c0e9e4SHong Zhang 
2543d0f46423SBarry Smith   bs  = A->rmap->bs;
2544f4c0e9e4SHong Zhang   mbs = a->mbs;
2545f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2546f4c0e9e4SHong Zhang   ba  = b->a;
2547f4c0e9e4SHong Zhang   bi  = b->i;
2548f4c0e9e4SHong Zhang   bj  = b->j;
2549f4c0e9e4SHong Zhang 
2550f4c0e9e4SHong Zhang   /* find ownerships */
2551d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2552f4c0e9e4SHong Zhang 
2553f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2555f4c0e9e4SHong Zhang 
2556f4c0e9e4SHong Zhang   /* row_max for B */
2557b8475685SHong Zhang   if (rank != size - 1) {
2558f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
25599371c9d4SSatish Balay       ncols = bi[1] - bi[0];
25609371c9d4SSatish Balay       bi++;
2561f4c0e9e4SHong Zhang       brow = bs * i;
2562f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2563f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2564f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2565ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
256604d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2567f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
25689371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
25699371c9d4SSatish Balay             ba++;
2570ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2571ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2572f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2573f4c0e9e4SHong Zhang           }
2574f4c0e9e4SHong Zhang         }
2575f4c0e9e4SHong Zhang         bj++;
2576f4c0e9e4SHong Zhang       }
2577f4c0e9e4SHong Zhang     }
2578f4c0e9e4SHong Zhang 
2579f4c0e9e4SHong Zhang     /* send values to its owners */
25806497c311SBarry Smith     for (PetscMPIInt dest = rank + 1; dest < size; dest++) {
2581f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2582ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
25836497c311SBarry Smith       PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2584ca54ac64SHong Zhang     }
2585f4c0e9e4SHong Zhang   }
2586f4c0e9e4SHong Zhang 
2587f4c0e9e4SHong Zhang   /* receive values */
2588ca54ac64SHong Zhang   if (rank) {
2589f4c0e9e4SHong Zhang     rvalues = work;
2590ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2591f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
25926497c311SBarry Smith       PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2593f4c0e9e4SHong Zhang       /* process values */
2594f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2595ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2596f4c0e9e4SHong Zhang       }
2597f4c0e9e4SHong Zhang     }
2598ca54ac64SHong Zhang   }
2599f4c0e9e4SHong Zhang 
26009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
26019566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
26023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260324d5174aSHong Zhang }
26042798e883SHong Zhang 
2605789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2606d71ae5a4SJacob Faibussowitsch {
26072798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2608d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
26093649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2610ffe4fb16SHong Zhang   Vec                bb1;
26113649974fSBarry Smith   const PetscScalar *b;
2612ffe4fb16SHong Zhang 
2613ffe4fb16SHong Zhang   PetscFunctionBegin;
26145f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26155f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2616ffe4fb16SHong Zhang 
2617a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26189566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26193ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2620a2b30743SBarry Smith   }
2621a2b30743SBarry Smith 
2622ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2623ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26249566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2625ffe4fb16SHong Zhang       its--;
2626ffe4fb16SHong Zhang     }
2627ffe4fb16SHong Zhang 
26289566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2629ffe4fb16SHong Zhang     while (its--) {
2630ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26319566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2632ffe4fb16SHong Zhang 
2633ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26349566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26359566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26369566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26379566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2638ffe4fb16SHong Zhang 
26399566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2640ffe4fb16SHong Zhang 
2641ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26429566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26439566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26449566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26459566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2646ffe4fb16SHong Zhang 
2647ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2648629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2649629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2650ffe4fb16SHong Zhang 
26519566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26529566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
26539566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26549566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2655ffe4fb16SHong Zhang 
2656ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26579566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2658ffe4fb16SHong Zhang 
2659ffe4fb16SHong Zhang       /* local diagonal sweep */
26609566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2661ffe4fb16SHong Zhang     }
26629566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2663fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26649566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2665fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26669566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2667fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2668fa22f6d0SBarry Smith     Vec                xx1;
2669ace3abfcSBarry Smith     PetscBool          hasop;
267020f1ed55SBarry Smith     const PetscScalar *diag;
2671887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
267220f1ed55SBarry Smith     PetscInt           i, n;
2673fa22f6d0SBarry Smith 
2674fa22f6d0SBarry Smith     if (!mat->xx1) {
26759566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
26769566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2677fa22f6d0SBarry Smith     }
2678fa22f6d0SBarry Smith     xx1 = mat->xx1;
2679fa22f6d0SBarry Smith     bb1 = mat->bb1;
2680fa22f6d0SBarry Smith 
26819566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2682fa22f6d0SBarry Smith 
2683fa22f6d0SBarry Smith     if (!mat->diag) {
2684effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26859566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
26869566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2687fa22f6d0SBarry Smith     }
26889566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2689fa22f6d0SBarry Smith 
2690fa22f6d0SBarry Smith     if (hasop) {
26919566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
26929566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
269320f1ed55SBarry Smith     } else {
269420f1ed55SBarry Smith       /*
269520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
26969566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
26979566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
269820f1ed55SBarry Smith       */
26999566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
27009566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
27019566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
27029566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
27039566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2704887ee2caSBarry Smith       if (omega == 1.0) {
270526fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
27069566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2707887ee2caSBarry Smith       } else {
270826fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
27099566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2710887ee2caSBarry Smith       }
27119566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
27129566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27139566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27149566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
271520f1ed55SBarry Smith     }
2716fa22f6d0SBarry Smith 
2717fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2718629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2719629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27209566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27219566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27229566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27249566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27259566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27269566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27279566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27289566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2729fa22f6d0SBarry Smith 
2730fa22f6d0SBarry Smith     /* local sweep */
27319566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27329566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2733f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2735ffe4fb16SHong Zhang }
2736ffe4fb16SHong Zhang 
2737dfb205c3SBarry Smith /*@
2738d8a51d2aSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows.
2739dfb205c3SBarry Smith 
2740d083f849SBarry Smith   Collective
2741dfb205c3SBarry Smith 
2742dfb205c3SBarry Smith   Input Parameters:
2743dfb205c3SBarry Smith + comm - MPI communicator
2744dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
274511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2746dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
2747d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
27482ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
27492ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27502ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2751483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2752dfb205c3SBarry Smith . j    - column indices
2753dfb205c3SBarry Smith - a    - matrix values
2754dfb205c3SBarry Smith 
2755dfb205c3SBarry Smith   Output Parameter:
2756dfb205c3SBarry Smith . mat - the matrix
2757dfb205c3SBarry Smith 
2758dfb205c3SBarry Smith   Level: intermediate
2759dfb205c3SBarry Smith 
2760dfb205c3SBarry Smith   Notes:
27612ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
27622ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
27632ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2764dfb205c3SBarry Smith 
27652ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2766dfb205c3SBarry Smith 
27671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2768d8a51d2aSBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()`
2769dfb205c3SBarry Smith @*/
2770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2771d71ae5a4SJacob Faibussowitsch {
2772dfb205c3SBarry Smith   PetscFunctionBegin;
27735f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
27745f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
27759566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
27769566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
27779566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
27789566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
27793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2780dfb205c3SBarry Smith }
2781dfb205c3SBarry Smith 
27825d83a8b1SBarry Smith /*@
278311a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2784dfb205c3SBarry Smith 
2785d083f849SBarry Smith   Collective
2786dfb205c3SBarry Smith 
2787dfb205c3SBarry Smith   Input Parameters:
27881c4f3114SJed Brown + B  - the matrix
2789dfb205c3SBarry Smith . bs - the block size
2790d8a51d2aSBarry Smith . i  - the indices into `j` for the start of each local row (indices start with zero)
2791d8a51d2aSBarry Smith . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
2792d8a51d2aSBarry Smith - v  - optional values in the matrix, pass `NULL` if not provided
2793dfb205c3SBarry Smith 
2794664954b6SBarry Smith   Level: advanced
2795664954b6SBarry Smith 
2796664954b6SBarry Smith   Notes:
2797d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2798d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2799d8a51d2aSBarry Smith   called this routine.
2800d8a51d2aSBarry Smith 
28010cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28020cd7f59aSBarry Smith   and usually the numerical values as well
28030cd7f59aSBarry Smith 
2804d8a51d2aSBarry Smith   Any entries passed in that are below the diagonal are ignored
2805dfb205c3SBarry Smith 
2806d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`,
2807d8a51d2aSBarry Smith           `MatCreateMPISBAIJWithArrays()`
2808dfb205c3SBarry Smith @*/
2809d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2810d71ae5a4SJacob Faibussowitsch {
2811dfb205c3SBarry Smith   PetscFunctionBegin;
2812cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2814dfb205c3SBarry Smith }
2815dfb205c3SBarry Smith 
2816d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2817d71ae5a4SJacob Faibussowitsch {
281810c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
281910c56fdeSHong Zhang   PetscInt    *indx;
282010c56fdeSHong Zhang   PetscScalar *values;
2821dfb205c3SBarry Smith 
28224dcd73b1SHong Zhang   PetscFunctionBegin;
28239566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
282410c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
282510c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2826de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
282710c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2828de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28294dcd73b1SHong Zhang 
28309566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28319371c9d4SSatish Balay     mbs = m / bs;
28329371c9d4SSatish Balay     Nbs = N / cbs;
283348a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2834da91a574SPierre Jolivet     nbs = n / cbs;
28354dcd73b1SHong Zhang 
28369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2837d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2838de25e9cbSPierre Jolivet 
28399566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28409566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2841de25e9cbSPierre Jolivet     if (rank == size - 1) {
2842de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28435f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2844de25e9cbSPierre Jolivet     }
2845de25e9cbSPierre Jolivet 
2846d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28479566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
284810c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
28499566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28504dcd73b1SHong Zhang       nnz = nnz / bs;
28514dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28529566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
28539566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28544dcd73b1SHong Zhang     }
28559566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28569566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28574dcd73b1SHong Zhang 
28589566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
28599566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28609566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28619566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
28629566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28639566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2864d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
28654dcd73b1SHong Zhang   }
28664dcd73b1SHong Zhang 
286710c56fdeSHong Zhang   /* numeric phase */
28689566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28699566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
28704dcd73b1SHong Zhang 
28719566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
28724dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
28739566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28744dcd73b1SHong Zhang     Ii = i + rstart;
28759566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
28769566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28774dcd73b1SHong Zhang   }
28789566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
28809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
28813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28824dcd73b1SHong Zhang }
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