1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 101*77431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1041302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 107*77431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 1101302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1121302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 1181302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1201302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 1361302d50aSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 177*77431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1801302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 183*77431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 1861302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1881302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 1941302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1961302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 2121302d50aSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 2381302d50aSBarry Smith PetscInt i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 2621302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay 2794a2ae208SSatish Balay #undef __FUNCT__ 2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 2811302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 282a30f8f8cSSatish Balay { 283a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 284dfbe8321SBarry Smith PetscErrorCode ierr; 2851302d50aSBarry Smith PetscInt i,N = m*n; 286a30f8f8cSSatish Balay MatScalar *vsingle; 287a30f8f8cSSatish Balay 288a30f8f8cSSatish Balay PetscFunctionBegin; 2891302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 2904d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay 2934a2ae208SSatish Balay #undef __FUNCT__ 2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 2951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 296a30f8f8cSSatish Balay { 297a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 298dfbe8321SBarry Smith PetscErrorCode ierr; 2991302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 300a30f8f8cSSatish Balay MatScalar *vsingle; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay PetscFunctionBegin; 3031302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 3044d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay #endif 307a30f8f8cSSatish Balay 308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 309a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 310a30f8f8cSSatish Balay */ 3114a2ae208SSatish Balay #undef __FUNCT__ 312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 3131302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 314a30f8f8cSSatish Balay { 315a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 316a30f8f8cSSatish Balay MatScalar value; 317b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 318dfbe8321SBarry Smith PetscErrorCode ierr; 3191302d50aSBarry Smith PetscInt i,j,row,col; 3201302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 3211302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 3221302d50aSBarry Smith PetscInt cend_orig=baij->cend_bs,bs=baij->bs; 323a30f8f8cSSatish Balay 324a30f8f8cSSatish Balay /* Some Variables required in the macro */ 325a30f8f8cSSatish Balay Mat A = baij->A; 326a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 3271302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 328a30f8f8cSSatish Balay MatScalar *aa=a->a; 329a30f8f8cSSatish Balay 330a30f8f8cSSatish Balay Mat B = baij->B; 331a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 3321302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 333a30f8f8cSSatish Balay MatScalar *ba=b->a; 334a30f8f8cSSatish Balay 3351302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 3361302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 337a30f8f8cSSatish Balay MatScalar *ap,*bap; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay /* for stash */ 3401302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 341f65c83cfSHong Zhang MatScalar *v_loc=0; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay PetscFunctionBegin; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay if(!baij->donotstash){ 3461302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 34782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 348a30f8f8cSSatish Balay } 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay for (i=0; i<m; i++) { 351a30f8f8cSSatish Balay if (im[i] < 0) continue; 352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 353*77431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 354a30f8f8cSSatish Balay #endif 355a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 356a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 357a30f8f8cSSatish Balay for (j=0; j<n; j++) { 358f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 359a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 360a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 361a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 362a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 368*77431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 369a30f8f8cSSatish Balay #endif 370a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 371a30f8f8cSSatish Balay if (mat->was_assembled) { 372a30f8f8cSSatish Balay if (!baij->colmap) { 373653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 374a30f8f8cSSatish Balay } 375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 376a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37771730473SSatish Balay col = col - 1; 378a30f8f8cSSatish Balay #else 37971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 380a30f8f8cSSatish Balay #endif 381a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 382a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 383a30f8f8cSSatish Balay col = in[j]; 384a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 385a30f8f8cSSatish Balay B = baij->B; 386a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 387a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 388a30f8f8cSSatish Balay ba=b->a; 38971730473SSatish Balay } else col += in[j]%bs; 390a30f8f8cSSatish Balay } else col = in[j]; 391a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 392a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 393a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } else { /* off processor entry */ 397a30f8f8cSSatish Balay if (!baij->donotstash) { 398a30f8f8cSSatish Balay n_loc = 0; 399a30f8f8cSSatish Balay for (j=0; j<n; j++){ 400f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 401a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 402a30f8f8cSSatish Balay if (roworiented) { 403a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 404a30f8f8cSSatish Balay } else { 405a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay n_loc++; 408a30f8f8cSSatish Balay } 409a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 410a30f8f8cSSatish Balay } 411a30f8f8cSSatish Balay } 412a30f8f8cSSatish Balay } 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay if(!baij->donotstash){ 415a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 4231302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 424a30f8f8cSSatish Balay { 4250880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 426f15d580aSBarry Smith const MatScalar *value; 427f15d580aSBarry Smith MatScalar *barray=baij->barray; 4280880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 429dfbe8321SBarry Smith PetscErrorCode ierr; 4301302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 4311302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 4321302d50aSBarry Smith PetscInt cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4330880e062SHong Zhang 434a30f8f8cSSatish Balay PetscFunctionBegin; 4350880e062SHong Zhang if(!barray) { 4360880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4370880e062SHong Zhang baij->barray = barray; 4380880e062SHong Zhang } 4390880e062SHong Zhang 4400880e062SHong Zhang if (roworiented) { 4410880e062SHong Zhang stepval = (n-1)*bs; 4420880e062SHong Zhang } else { 4430880e062SHong Zhang stepval = (m-1)*bs; 4440880e062SHong Zhang } 4450880e062SHong Zhang for (i=0; i<m; i++) { 4460880e062SHong Zhang if (im[i] < 0) continue; 4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 448*77431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 4490880e062SHong Zhang #endif 4500880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4510880e062SHong Zhang row = im[i] - rstart; 4520880e062SHong Zhang for (j=0; j<n; j++) { 4530880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4540880e062SHong Zhang if ((roworiented) && (n == 1)) { 455f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4560880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 457f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4580880e062SHong Zhang } else { /* Here a copy is required */ 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4650880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4660880e062SHong Zhang *barray++ = *value++; 4670880e062SHong Zhang } 4680880e062SHong Zhang } 4690880e062SHong Zhang barray -=bs2; 4700880e062SHong Zhang } 4710880e062SHong Zhang 4720880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4730880e062SHong Zhang col = in[j] - cstart; 4740880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4750880e062SHong Zhang } 4760880e062SHong Zhang else if (in[j] < 0) continue; 4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 478*77431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 4790880e062SHong Zhang #endif 4800880e062SHong Zhang else { 4810880e062SHong Zhang if (mat->was_assembled) { 4820880e062SHong Zhang if (!baij->colmap) { 483653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4840880e062SHong Zhang } 4850880e062SHong Zhang 4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4881302d50aSBarry Smith { PetscInt data; 4890880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4900880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4910880e062SHong Zhang } 4920880e062SHong Zhang #else 4930880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4940880e062SHong Zhang #endif 4950880e062SHong Zhang #endif 4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4970880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4980880e062SHong Zhang col = (col - 1)/bs; 4990880e062SHong Zhang #else 5000880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5010880e062SHong Zhang #endif 5020880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5030880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5040880e062SHong Zhang col = in[j]; 5050880e062SHong Zhang } 5060880e062SHong Zhang } 5070880e062SHong Zhang else col = in[j]; 508e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5090880e062SHong Zhang } 5100880e062SHong Zhang } 5110880e062SHong Zhang } else { 5120880e062SHong Zhang if (!baij->donotstash) { 5130880e062SHong Zhang if (roworiented) { 5140880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5150880e062SHong Zhang } else { 5160880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5170880e062SHong Zhang } 5180880e062SHong Zhang } 5190880e062SHong Zhang } 5200880e062SHong Zhang } 5210880e062SHong Zhang PetscFunctionReturn(0); 522a30f8f8cSSatish Balay } 523a30f8f8cSSatish Balay 524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 5251302d50aSBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 5261302d50aSBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5271302d50aSBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5284a2ae208SSatish Balay #undef __FUNCT__ 5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 5301302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 531a30f8f8cSSatish Balay { 532a30f8f8cSSatish Balay PetscFunctionBegin; 5331302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 53496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay 5374a2ae208SSatish Balay #undef __FUNCT__ 5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 5391302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 540a30f8f8cSSatish Balay { 541a30f8f8cSSatish Balay PetscFunctionBegin; 5421302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 54396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 5521302d50aSBarry Smith PetscInt bs=baij->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 5531302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557*77431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 558*77431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562*77431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 563*77431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data --; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay } else { 58529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay PetscFunctionReturn(0); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay 5914a2ae208SSatish Balay #undef __FUNCT__ 5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 594a30f8f8cSSatish Balay { 595a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 596dfbe8321SBarry Smith PetscErrorCode ierr; 597a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 598a30f8f8cSSatish Balay 599a30f8f8cSSatish Balay PetscFunctionBegin; 600a30f8f8cSSatish Balay if (baij->size == 1) { 601a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 602a30f8f8cSSatish Balay } else { 603a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 604f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 605a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 607a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 608a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 609d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 610a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 611a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 612a30f8f8cSSatish Balay } else { 61329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 614a30f8f8cSSatish Balay } 615a30f8f8cSSatish Balay } 616a30f8f8cSSatish Balay PetscFunctionReturn(0); 617a30f8f8cSSatish Balay } 618a30f8f8cSSatish Balay 619a30f8f8cSSatish Balay /* 620a30f8f8cSSatish Balay Creates the hash table, and sets the table 621a30f8f8cSSatish Balay This table is created only once. 622a30f8f8cSSatish Balay If new entried need to be added to the matrix 623a30f8f8cSSatish Balay then the hash table has to be destroyed and 624a30f8f8cSSatish Balay recreated. 625a30f8f8cSSatish Balay */ 6264a2ae208SSatish Balay #undef __FUNCT__ 6274a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 628dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 629a30f8f8cSSatish Balay { 630a30f8f8cSSatish Balay PetscFunctionBegin; 6311302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 63296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 6354a2ae208SSatish Balay #undef __FUNCT__ 6364a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 637dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 638a30f8f8cSSatish Balay { 639a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 640dfbe8321SBarry Smith PetscErrorCode ierr; 6411302d50aSBarry Smith PetscInt nstash,reallocs; 642a30f8f8cSSatish Balay InsertMode addv; 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay PetscFunctionBegin; 645a30f8f8cSSatish Balay if (baij->donotstash) { 646a30f8f8cSSatish Balay PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 650a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 651a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 65229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 657a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 658a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 659*77431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs); 660a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 661*77431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs); 662a30f8f8cSSatish Balay PetscFunctionReturn(0); 663a30f8f8cSSatish Balay } 664a30f8f8cSSatish Balay 6654a2ae208SSatish Balay #undef __FUNCT__ 6664a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 667dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 668a30f8f8cSSatish Balay { 669a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 670a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 671a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6726849ba73SBarry Smith PetscErrorCode ierr; 6731302d50aSBarry Smith PetscInt i,j,rstart,ncols,n,flg,bs2=baij->bs2; 6741302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 675a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 676a30f8f8cSSatish Balay MatScalar *val; 677a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 678a30f8f8cSSatish Balay 679a30f8f8cSSatish Balay PetscFunctionBegin; 680a30f8f8cSSatish Balay 681a30f8f8cSSatish Balay if (!baij->donotstash) { 682a30f8f8cSSatish Balay while (1) { 683a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 684a30f8f8cSSatish Balay if (!flg) break; 685a30f8f8cSSatish Balay 686a30f8f8cSSatish Balay for (i=0; i<n;) { 687a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 688a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 689a30f8f8cSSatish Balay if (j < n) ncols = j-i; 690a30f8f8cSSatish Balay else ncols = n-i; 691a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 692a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 693a30f8f8cSSatish Balay i = j; 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 697a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 698a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 699a30f8f8cSSatish Balay restore the original flags */ 700a30f8f8cSSatish Balay r1 = baij->roworiented; 701a30f8f8cSSatish Balay r2 = a->roworiented; 702a30f8f8cSSatish Balay r3 = b->roworiented; 703a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 704a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 705a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 706a30f8f8cSSatish Balay while (1) { 707a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 708a30f8f8cSSatish Balay if (!flg) break; 709a30f8f8cSSatish Balay 710a30f8f8cSSatish Balay for (i=0; i<n;) { 711a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 712a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 713a30f8f8cSSatish Balay if (j < n) ncols = j-i; 714a30f8f8cSSatish Balay else ncols = n-i; 715a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 716a30f8f8cSSatish Balay i = j; 717a30f8f8cSSatish Balay } 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 720a30f8f8cSSatish Balay baij->roworiented = r1; 721a30f8f8cSSatish Balay a->roworiented = r2; 722a30f8f8cSSatish Balay b->roworiented = r3; 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay 725a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 726a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 727a30f8f8cSSatish Balay 728a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 729a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 730a30f8f8cSSatish Balay /* 731a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 732a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 733a30f8f8cSSatish Balay */ 734a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 735a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 736a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 737c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay 741a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 74240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 745a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 748a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 749f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 750a30f8f8cSSatish Balay baij->ht_total_ct = 0; 751a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay #endif 754a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 755c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 756a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 757a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 758a30f8f8cSSatish Balay } 759a30f8f8cSSatish Balay 760a30f8f8cSSatish Balay if (baij->rowvalues) { 761a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 762a30f8f8cSSatish Balay baij->rowvalues = 0; 763a30f8f8cSSatish Balay } 7645222a1afSHong Zhang 765a30f8f8cSSatish Balay PetscFunctionReturn(0); 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay 7684a2ae208SSatish Balay #undef __FUNCT__ 7694a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7706849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 771a30f8f8cSSatish Balay { 772a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 773dfbe8321SBarry Smith PetscErrorCode ierr; 7741302d50aSBarry Smith PetscInt bs = baij->bs; 7751302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 77632077d6dSBarry Smith PetscTruth iascii,isdraw; 777b0a32e0cSBarry Smith PetscViewer sviewer; 778f3ef73ceSBarry Smith PetscViewerFormat format; 779a30f8f8cSSatish Balay 780a30f8f8cSSatish Balay PetscFunctionBegin; 78132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 782fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 78332077d6dSBarry Smith if (iascii) { 784b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 785456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 786a30f8f8cSSatish Balay MatInfo info; 787a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 789*77431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 790*77431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 791*77431f27SBarry Smith baij->bs,(PetscInt)info.memory);CHKERRQ(ierr); 792a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 793*77431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 794a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 795*77431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 796b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 797a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 798a30f8f8cSSatish Balay PetscFunctionReturn(0); 799fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 800*77431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 801a30f8f8cSSatish Balay PetscFunctionReturn(0); 802a30f8f8cSSatish Balay } 803a30f8f8cSSatish Balay } 804a30f8f8cSSatish Balay 805a30f8f8cSSatish Balay if (isdraw) { 806b0a32e0cSBarry Smith PetscDraw draw; 807a30f8f8cSSatish Balay PetscTruth isnull; 808b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 809b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 810a30f8f8cSSatish Balay } 811a30f8f8cSSatish Balay 812a30f8f8cSSatish Balay if (size == 1) { 813e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 815a30f8f8cSSatish Balay } else { 816a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 817a30f8f8cSSatish Balay Mat A; 81865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 81965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 8201302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 821a30f8f8cSSatish Balay MatScalar *a; 822a30f8f8cSSatish Balay 823f204ca49SKris Buschelman /* Should this be the same type as mat? */ 824a30f8f8cSSatish Balay if (!rank) { 825f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 826a30f8f8cSSatish Balay } else { 827f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 828a30f8f8cSSatish Balay } 829f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 830f204ca49SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 831b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 832a30f8f8cSSatish Balay 833a30f8f8cSSatish Balay /* copy over the A part */ 83465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 835a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 8361302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 837a30f8f8cSSatish Balay 838a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 839a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 840a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 841a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 842a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 843a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 844a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 845a30f8f8cSSatish Balay col++; a += bs; 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay } 849a30f8f8cSSatish Balay /* copy over the B part */ 85065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 852a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 853a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 854a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 855a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 856a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 857a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 858a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 859a30f8f8cSSatish Balay col++; a += bs; 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 864a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 865a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 866a30f8f8cSSatish Balay /* 867a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 868b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 869a30f8f8cSSatish Balay */ 870b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 87165d70643SHong Zhang if (!rank) { 872e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 873a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 874a30f8f8cSSatish Balay } 875b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 876a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 877a30f8f8cSSatish Balay } 878a30f8f8cSSatish Balay PetscFunctionReturn(0); 879a30f8f8cSSatish Balay } 880a30f8f8cSSatish Balay 8814a2ae208SSatish Balay #undef __FUNCT__ 8824a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 883dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 884a30f8f8cSSatish Balay { 885dfbe8321SBarry Smith PetscErrorCode ierr; 88632077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 887a30f8f8cSSatish Balay 888a30f8f8cSSatish Balay PetscFunctionBegin; 88932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 890fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 891b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 892fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 89332077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 894a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 895a30f8f8cSSatish Balay } else { 8961302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 897a30f8f8cSSatish Balay } 898a30f8f8cSSatish Balay PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay 9014a2ae208SSatish Balay #undef __FUNCT__ 9024a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 903dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 904a30f8f8cSSatish Balay { 905a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 906dfbe8321SBarry Smith PetscErrorCode ierr; 907a30f8f8cSSatish Balay 908a30f8f8cSSatish Balay PetscFunctionBegin; 909a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 910*77431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 911a30f8f8cSSatish Balay #endif 912a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 913a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 914a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 915a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 916a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 917a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 918a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 919a30f8f8cSSatish Balay #else 920a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 921a30f8f8cSSatish Balay #endif 922a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 923a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 924a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 92540781036SHong Zhang if (baij->slvec0) { 92640781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 92740781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 92840781036SHong Zhang } 92940781036SHong Zhang if (baij->slvec1) { 93040781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 93140781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 93240781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 93340781036SHong Zhang } 93440781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 935a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 937a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 938a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 939a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 940a30f8f8cSSatish Balay #endif 941a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 942901853e0SKris Buschelman 943901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 944901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 945901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 946901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 947a30f8f8cSSatish Balay PetscFunctionReturn(0); 948a30f8f8cSSatish Balay } 949a30f8f8cSSatish Balay 9504a2ae208SSatish Balay #undef __FUNCT__ 951a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 952dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 953a9d4b620SHong Zhang { 954a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 955dfbe8321SBarry Smith PetscErrorCode ierr; 9561302d50aSBarry Smith PetscInt nt,mbs=a->mbs,bs=a->bs; 957a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 958a9d4b620SHong Zhang 959a9d4b620SHong Zhang PetscFunctionBegin; 960a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 961a9d4b620SHong Zhang if (nt != A->n) { 962a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 963a9d4b620SHong Zhang } 964a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 965a9d4b620SHong Zhang if (nt != A->m) { 966a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 967a9d4b620SHong Zhang } 968a9d4b620SHong Zhang 969a9d4b620SHong Zhang /* diagonal part */ 970a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 971a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 972a9d4b620SHong Zhang 973a9d4b620SHong Zhang /* subdiagonal part */ 974a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 975a9d4b620SHong Zhang 976a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9771ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9781ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 979a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9801ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 981a9d4b620SHong Zhang 982a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9831ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 984a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 985a9d4b620SHong Zhang 986a9d4b620SHong Zhang /* supperdiagonal part */ 987a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 988a9d4b620SHong Zhang 989a9d4b620SHong Zhang PetscFunctionReturn(0); 990a9d4b620SHong Zhang } 991a9d4b620SHong Zhang 992a9d4b620SHong Zhang #undef __FUNCT__ 99340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 994dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 995a30f8f8cSSatish Balay { 996a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 997dfbe8321SBarry Smith PetscErrorCode ierr; 9981302d50aSBarry Smith PetscInt nt; 999a30f8f8cSSatish Balay 1000a30f8f8cSSatish Balay PetscFunctionBegin; 1001a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1002b5df2d14SHong Zhang if (nt != A->n) { 100329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1004a30f8f8cSSatish Balay } 1005a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1006b5df2d14SHong Zhang if (nt != A->m) { 100729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1008a30f8f8cSSatish Balay } 100965d70643SHong Zhang 1010b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1011b941877fSHong Zhang /* do diagonal part */ 1012b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1013b941877fSHong Zhang /* do supperdiagonal part */ 1014b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1015b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1016b941877fSHong Zhang /* do subdiagonal part */ 1017b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1018b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1019b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 102065d70643SHong Zhang 1021a30f8f8cSSatish Balay PetscFunctionReturn(0); 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay 10244a2ae208SSatish Balay #undef __FUNCT__ 10254a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1026dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1027a30f8f8cSSatish Balay { 1028de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1029dfbe8321SBarry Smith PetscErrorCode ierr; 10301302d50aSBarry Smith PetscInt mbs=a->mbs,bs=a->bs; 1031a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1032a9d4b620SHong Zhang 1033a9d4b620SHong Zhang PetscFunctionBegin; 1034a9d4b620SHong Zhang /* 103556faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 103656faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1037a9d4b620SHong Zhang */ 1038a9d4b620SHong Zhang /* diagonal part */ 1039a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1040a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1041a9d4b620SHong Zhang 1042a9d4b620SHong Zhang /* subdiagonal part */ 1043a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1044a9d4b620SHong Zhang 1045a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10461ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10471ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1048a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 10491ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1050a9d4b620SHong Zhang 1051a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 10521ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1053a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1054a9d4b620SHong Zhang 1055a9d4b620SHong Zhang /* supperdiagonal part */ 1056a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1057a9d4b620SHong Zhang 1058a9d4b620SHong Zhang PetscFunctionReturn(0); 1059a9d4b620SHong Zhang } 1060a9d4b620SHong Zhang 1061a9d4b620SHong Zhang #undef __FUNCT__ 1062a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1063dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1064a9d4b620SHong Zhang { 1065a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1066dfbe8321SBarry Smith PetscErrorCode ierr; 1067a30f8f8cSSatish Balay 1068a30f8f8cSSatish Balay PetscFunctionBegin; 1069b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1070b941877fSHong Zhang /* do diagonal part */ 1071b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1072b941877fSHong Zhang /* do supperdiagonal part */ 1073b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1074de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1075de8b6608SHong Zhang 1076b941877fSHong Zhang /* do subdiagonal part */ 1077a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1078a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1079a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1080aa482183SHong Zhang 1081a30f8f8cSSatish Balay PetscFunctionReturn(0); 1082a30f8f8cSSatish Balay } 1083a30f8f8cSSatish Balay 10844a2ae208SSatish Balay #undef __FUNCT__ 10854a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1086dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1087a30f8f8cSSatish Balay { 1088dfbe8321SBarry Smith PetscErrorCode ierr; 10895a7c0312SHong Zhang 1090a30f8f8cSSatish Balay PetscFunctionBegin; 10915a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10925a7c0312SHong Zhang PetscFunctionReturn(0); 1093a30f8f8cSSatish Balay } 1094a30f8f8cSSatish Balay 10954a2ae208SSatish Balay #undef __FUNCT__ 10964a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1097dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1098a30f8f8cSSatish Balay { 1099dfbe8321SBarry Smith PetscErrorCode ierr; 11005a7c0312SHong Zhang 1101a30f8f8cSSatish Balay PetscFunctionBegin; 11025a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 11035a7c0312SHong Zhang PetscFunctionReturn(0); 1104a30f8f8cSSatish Balay } 1105a30f8f8cSSatish Balay 1106a30f8f8cSSatish Balay /* 1107a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1108a30f8f8cSSatish Balay diagonal block 1109a30f8f8cSSatish Balay */ 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1112dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1115dfbe8321SBarry Smith PetscErrorCode ierr; 1116a30f8f8cSSatish Balay 1117a30f8f8cSSatish Balay PetscFunctionBegin; 111829bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1119a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1120a30f8f8cSSatish Balay PetscFunctionReturn(0); 1121a30f8f8cSSatish Balay } 1122a30f8f8cSSatish Balay 11234a2ae208SSatish Balay #undef __FUNCT__ 11244a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1125dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1126a30f8f8cSSatish Balay { 1127a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128dfbe8321SBarry Smith PetscErrorCode ierr; 1129a30f8f8cSSatish Balay 1130a30f8f8cSSatish Balay PetscFunctionBegin; 1131a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1132a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1133a30f8f8cSSatish Balay PetscFunctionReturn(0); 1134a30f8f8cSSatish Balay } 1135a30f8f8cSSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11381302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1139a30f8f8cSSatish Balay { 1140a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 114187828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 11426849ba73SBarry Smith PetscErrorCode ierr; 11431302d50aSBarry Smith PetscInt bs = mat->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 11441302d50aSBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 11451302d50aSBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1146a30f8f8cSSatish Balay 1147a30f8f8cSSatish Balay PetscFunctionBegin; 114829bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1149a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1152a30f8f8cSSatish Balay /* 1153a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1154a30f8f8cSSatish Balay */ 1155a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1156a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 11571302d50aSBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1158a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1159a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1160a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1161a30f8f8cSSatish Balay } 11621302d50aSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 11631302d50aSBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1164a30f8f8cSSatish Balay } 1165a30f8f8cSSatish Balay 116629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1167a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1168a30f8f8cSSatish Balay 1169a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1170a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1171a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1172a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1173a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay nztot = nzA + nzB; 1175a30f8f8cSSatish Balay 1176a30f8f8cSSatish Balay cmap = mat->garray; 1177a30f8f8cSSatish Balay if (v || idx) { 1178a30f8f8cSSatish Balay if (nztot) { 1179a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 11801302d50aSBarry Smith PetscInt imark = -1; 1181a30f8f8cSSatish Balay if (v) { 1182a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1183a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1184a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1185a30f8f8cSSatish Balay else break; 1186a30f8f8cSSatish Balay } 1187a30f8f8cSSatish Balay imark = i; 1188a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1189a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay if (idx) { 1192a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1193a30f8f8cSSatish Balay if (imark > -1) { 1194a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1195a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1196a30f8f8cSSatish Balay } 1197a30f8f8cSSatish Balay } else { 1198a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1199a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1200a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1201a30f8f8cSSatish Balay else break; 1202a30f8f8cSSatish Balay } 1203a30f8f8cSSatish Balay imark = i; 1204a30f8f8cSSatish Balay } 1205a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1206a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1207a30f8f8cSSatish Balay } 1208a30f8f8cSSatish Balay } else { 1209a30f8f8cSSatish Balay if (idx) *idx = 0; 1210a30f8f8cSSatish Balay if (v) *v = 0; 1211a30f8f8cSSatish Balay } 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay *nz = nztot; 1214a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1215a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1216a30f8f8cSSatish Balay PetscFunctionReturn(0); 1217a30f8f8cSSatish Balay } 1218a30f8f8cSSatish Balay 12194a2ae208SSatish Balay #undef __FUNCT__ 12204a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12211302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1222a30f8f8cSSatish Balay { 1223a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1224a30f8f8cSSatish Balay 1225a30f8f8cSSatish Balay PetscFunctionBegin; 1226a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 122729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1228a30f8f8cSSatish Balay } 1229a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1230a30f8f8cSSatish Balay PetscFunctionReturn(0); 1231a30f8f8cSSatish Balay } 1232a30f8f8cSSatish Balay 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 12351302d50aSBarry Smith PetscErrorCode MatGetBlockSize_MPISBAIJ(Mat mat,PetscInt *bs) 1236a30f8f8cSSatish Balay { 1237a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1238a30f8f8cSSatish Balay 1239a30f8f8cSSatish Balay PetscFunctionBegin; 1240a30f8f8cSSatish Balay *bs = baij->bs; 1241a30f8f8cSSatish Balay PetscFunctionReturn(0); 1242a30f8f8cSSatish Balay } 1243a30f8f8cSSatish Balay 12444a2ae208SSatish Balay #undef __FUNCT__ 12454a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1246dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1247a30f8f8cSSatish Balay { 1248a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250a30f8f8cSSatish Balay 1251a30f8f8cSSatish Balay PetscFunctionBegin; 1252a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1253a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1254a30f8f8cSSatish Balay PetscFunctionReturn(0); 1255a30f8f8cSSatish Balay } 1256a30f8f8cSSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1259dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1260a30f8f8cSSatish Balay { 1261a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1262a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1263dfbe8321SBarry Smith PetscErrorCode ierr; 1264a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1265a30f8f8cSSatish Balay 1266a30f8f8cSSatish Balay PetscFunctionBegin; 1267f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1268a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1269a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1270a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1271a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1272a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1273a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1274a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1275a30f8f8cSSatish Balay info->nz_used = isend[0]; 1276a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1277a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1278a30f8f8cSSatish Balay info->memory = isend[3]; 1279a30f8f8cSSatish Balay info->mallocs = isend[4]; 1280a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1281d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1282a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1283a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1284a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1285a30f8f8cSSatish Balay info->memory = irecv[3]; 1286a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1287a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1288d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1289a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1290a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1291a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1292a30f8f8cSSatish Balay info->memory = irecv[3]; 1293a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1294a30f8f8cSSatish Balay } else { 1295*77431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1296a30f8f8cSSatish Balay } 1297f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1298f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1299f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1300f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1301a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1302a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1303a30f8f8cSSatish Balay info->factor_mallocs = 0; 1304a30f8f8cSSatish Balay PetscFunctionReturn(0); 1305a30f8f8cSSatish Balay } 1306a30f8f8cSSatish Balay 13074a2ae208SSatish Balay #undef __FUNCT__ 13084a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1309dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1310a30f8f8cSSatish Balay { 1311a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1312dfbe8321SBarry Smith PetscErrorCode ierr; 1313a30f8f8cSSatish Balay 1314a30f8f8cSSatish Balay PetscFunctionBegin; 1315e98b92d7SKris Buschelman switch (op) { 1316e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1317e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1318e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1319e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1320e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1321e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1322e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1323a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1324a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1325e98b92d7SKris Buschelman break; 1326e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1327a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1328a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1330e98b92d7SKris Buschelman break; 1331e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1332e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1333e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1334b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1335e98b92d7SKris Buschelman break; 1336e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1337a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1338a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1339a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1340e98b92d7SKris Buschelman break; 1341e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1342a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1343e98b92d7SKris Buschelman break; 1344e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 134529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1346e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1347a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1348e98b92d7SKris Buschelman break; 13499a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13509a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13519a4540c5SBarry Smith case MAT_HERMITIAN: 13529a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 135377e54ba9SKris Buschelman case MAT_SYMMETRIC: 135477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13559a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13569a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13579a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 135877e54ba9SKris Buschelman break; 1359e98b92d7SKris Buschelman default: 136029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1361a30f8f8cSSatish Balay } 1362a30f8f8cSSatish Balay PetscFunctionReturn(0); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay 13654a2ae208SSatish Balay #undef __FUNCT__ 13668115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1367dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1368a30f8f8cSSatish Balay { 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370a30f8f8cSSatish Balay PetscFunctionBegin; 1371999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13728115998fSBarry Smith PetscFunctionReturn(0); 1373a30f8f8cSSatish Balay } 1374a30f8f8cSSatish Balay 13754a2ae208SSatish Balay #undef __FUNCT__ 13764a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1377dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1378a30f8f8cSSatish Balay { 1379a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1380a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1381dfbe8321SBarry Smith PetscErrorCode ierr; 13821302d50aSBarry Smith PetscInt s1,s2,s3; 1383a30f8f8cSSatish Balay 1384a30f8f8cSSatish Balay PetscFunctionBegin; 1385a30f8f8cSSatish Balay if (ll != rr) { 138629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1387a30f8f8cSSatish Balay } 1388a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1389a30f8f8cSSatish Balay if (rr) { 1390a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 139129bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1392a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1393a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay /*} if (ll) { */ 1395a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 139629bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1397a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay /* } */ 1399a30f8f8cSSatish Balay /* scale the diagonal block */ 1400a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1401a30f8f8cSSatish Balay 1402a30f8f8cSSatish Balay /* if (rr) { */ 1403a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1404a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1405a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1406a30f8f8cSSatish Balay } 1407a30f8f8cSSatish Balay 1408a30f8f8cSSatish Balay PetscFunctionReturn(0); 1409a30f8f8cSSatish Balay } 1410a30f8f8cSSatish Balay 14114a2ae208SSatish Balay #undef __FUNCT__ 14124a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1413dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1414a30f8f8cSSatish Balay { 1415a30f8f8cSSatish Balay PetscFunctionBegin; 1416c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1417a30f8f8cSSatish Balay } 1418a30f8f8cSSatish Balay 14194a2ae208SSatish Balay #undef __FUNCT__ 14204a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1421dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1422a30f8f8cSSatish Balay { 1423a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1424a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 14251302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1426dfbe8321SBarry Smith PetscErrorCode ierr; 1427a30f8f8cSSatish Balay 1428a30f8f8cSSatish Balay PetscFunctionBegin; 1429a30f8f8cSSatish Balay if (!a->rank) { 1430a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1431a30f8f8cSSatish Balay } 14321302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1433a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1434a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1435a30f8f8cSSatish Balay PetscFunctionReturn(0); 1436a30f8f8cSSatish Balay } 1437a30f8f8cSSatish Balay 14384a2ae208SSatish Balay #undef __FUNCT__ 14394a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1440dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1441a30f8f8cSSatish Balay { 1442f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1443dfbe8321SBarry Smith PetscErrorCode ierr; 1444a30f8f8cSSatish Balay 1445a30f8f8cSSatish Balay PetscFunctionBegin; 1446a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1447a30f8f8cSSatish Balay PetscFunctionReturn(0); 1448a30f8f8cSSatish Balay } 1449a30f8f8cSSatish Balay 14506849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1451a30f8f8cSSatish Balay 14524a2ae208SSatish Balay #undef __FUNCT__ 14534a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1454dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1455a30f8f8cSSatish Balay { 1456a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1457a30f8f8cSSatish Balay Mat a,b,c,d; 1458a30f8f8cSSatish Balay PetscTruth flg; 1459dfbe8321SBarry Smith PetscErrorCode ierr; 1460a30f8f8cSSatish Balay 1461a30f8f8cSSatish Balay PetscFunctionBegin; 1462a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1463a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1464a30f8f8cSSatish Balay 1465a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1466a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1467a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1468a30f8f8cSSatish Balay } 1469a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1470a30f8f8cSSatish Balay PetscFunctionReturn(0); 1471a30f8f8cSSatish Balay } 1472a30f8f8cSSatish Balay 14734a2ae208SSatish Balay #undef __FUNCT__ 14744a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1475dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1476273d9f13SBarry Smith { 1477dfbe8321SBarry Smith PetscErrorCode ierr; 1478273d9f13SBarry Smith 1479273d9f13SBarry Smith PetscFunctionBegin; 1480273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1481273d9f13SBarry Smith PetscFunctionReturn(0); 1482273d9f13SBarry Smith } 1483a5e6ed63SBarry Smith 1484a5e6ed63SBarry Smith #undef __FUNCT__ 1485a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14861302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1487a5e6ed63SBarry Smith { 14886849ba73SBarry Smith PetscErrorCode ierr; 14891302d50aSBarry Smith PetscInt i; 1490a5e6ed63SBarry Smith PetscTruth flg; 1491a5e6ed63SBarry Smith 14926849ba73SBarry Smith PetscFunctionBegin; 1493a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1494a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1495a5e6ed63SBarry Smith if (!flg) { 14961302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1497a5e6ed63SBarry Smith } 1498a5e6ed63SBarry Smith } 1499a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1500a5e6ed63SBarry Smith PetscFunctionReturn(0); 1501a5e6ed63SBarry Smith } 1502a5e6ed63SBarry Smith 1503a5e6ed63SBarry Smith 1504a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1505a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1506a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1507a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1508a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1509a9d4b620SHong Zhang MatMult_MPISBAIJ, 151097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1511a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1512a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 151697304618SKris Buschelman /*10*/ 0, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay 0, 15192798e883SHong Zhang MatRelax_MPISBAIJ, 1520a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 152197304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1522a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1523a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1524a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1525a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 152697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1527a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1530a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 153197304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 153697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1537b5df2d14SHong Zhang 0, 1538a30f8f8cSSatish Balay 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay 0, 154197304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 154697304618SKris Buschelman /*40*/ 0, 1547a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1548d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1549a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1550a30f8f8cSSatish Balay 0, 155197304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1552a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1553a30f8f8cSSatish Balay 0, 1554a30f8f8cSSatish Balay 0, 1555a30f8f8cSSatish Balay 0, 155697304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1557a30f8f8cSSatish Balay 0, 1558a30f8f8cSSatish Balay 0, 1559a30f8f8cSSatish Balay 0, 1560a30f8f8cSSatish Balay 0, 156197304618SKris Buschelman /*55*/ 0, 1562a30f8f8cSSatish Balay 0, 1563a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1564a30f8f8cSSatish Balay 0, 1565a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 156697304618SKris Buschelman /*60*/ 0, 1567a30f8f8cSSatish Balay 0, 1568a30f8f8cSSatish Balay 0, 15698a124369SBarry Smith MatGetPetscMaps_Petsc, 157024d5174aSHong Zhang 0, 157197304618SKris Buschelman /*65*/ 0, 157224d5174aSHong Zhang 0, 157324d5174aSHong Zhang 0, 157424d5174aSHong Zhang 0, 157524d5174aSHong Zhang 0, 157697304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 157724d5174aSHong Zhang 0, 157897304618SKris Buschelman 0, 157997304618SKris Buschelman 0, 158097304618SKris Buschelman 0, 158197304618SKris Buschelman /*75*/ 0, 158297304618SKris Buschelman 0, 158397304618SKris Buschelman 0, 158497304618SKris Buschelman 0, 158597304618SKris Buschelman 0, 158697304618SKris Buschelman /*80*/ 0, 158797304618SKris Buschelman 0, 158897304618SKris Buschelman 0, 158997304618SKris Buschelman 0, 1590865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1591865e5f61SKris Buschelman /*85*/ 0, 1592865e5f61SKris Buschelman 0, 1593865e5f61SKris Buschelman 0, 1594865e5f61SKris Buschelman 0, 1595865e5f61SKris Buschelman 0, 1596865e5f61SKris Buschelman /*90*/ 0, 1597865e5f61SKris Buschelman 0, 1598865e5f61SKris Buschelman 0, 1599865e5f61SKris Buschelman 0, 1600865e5f61SKris Buschelman 0, 1601865e5f61SKris Buschelman /*95*/ 0, 1602865e5f61SKris Buschelman 0, 1603865e5f61SKris Buschelman 0, 1604865e5f61SKris Buschelman 0}; 1605a30f8f8cSSatish Balay 1606a30f8f8cSSatish Balay 1607a30f8f8cSSatish Balay EXTERN_C_BEGIN 16084a2ae208SSatish Balay #undef __FUNCT__ 16094a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1610dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1611a30f8f8cSSatish Balay { 1612a30f8f8cSSatish Balay PetscFunctionBegin; 1613a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1614a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1615a30f8f8cSSatish Balay PetscFunctionReturn(0); 1616a30f8f8cSSatish Balay } 1617a30f8f8cSSatish Balay EXTERN_C_END 1618a30f8f8cSSatish Balay 1619273d9f13SBarry Smith EXTERN_C_BEGIN 16204a2ae208SSatish Balay #undef __FUNCT__ 1621a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 16221302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1623a23d5eceSKris Buschelman { 1624a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1625dfbe8321SBarry Smith PetscErrorCode ierr; 16261302d50aSBarry Smith PetscInt i,mbs,Mbs; 1627a23d5eceSKris Buschelman 1628a23d5eceSKris Buschelman PetscFunctionBegin; 1629a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1630a23d5eceSKris Buschelman 1631a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1632a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1633a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1634*77431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1635*77431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1636a23d5eceSKris Buschelman if (d_nnz) { 1637a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1638*77431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1639a23d5eceSKris Buschelman } 1640a23d5eceSKris Buschelman } 1641a23d5eceSKris Buschelman if (o_nnz) { 1642a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1643*77431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1644a23d5eceSKris Buschelman } 1645a23d5eceSKris Buschelman } 1646a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1647a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1648a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1649a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1650a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1651a23d5eceSKris Buschelman 1652a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1653a23d5eceSKris Buschelman mbs = B->m/bs; 1654a23d5eceSKris Buschelman Mbs = B->M/bs; 1655a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1656*77431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1657a23d5eceSKris Buschelman } 1658a23d5eceSKris Buschelman 1659a23d5eceSKris Buschelman b->bs = bs; 1660a23d5eceSKris Buschelman b->bs2 = bs*bs; 1661a23d5eceSKris Buschelman b->mbs = mbs; 1662a23d5eceSKris Buschelman b->nbs = mbs; 1663a23d5eceSKris Buschelman b->Mbs = Mbs; 1664a23d5eceSKris Buschelman b->Nbs = Mbs; 1665a23d5eceSKris Buschelman 1666a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1667a23d5eceSKris Buschelman b->rowners[0] = 0; 1668a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1669a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1670a23d5eceSKris Buschelman } 1671a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1672a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1673a23d5eceSKris Buschelman b->cstart = b->rstart; 1674a23d5eceSKris Buschelman b->cend = b->rend; 1675a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1676a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1677a23d5eceSKris Buschelman } 1678a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1679a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1680a23d5eceSKris Buschelman 1681a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1682a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1683a23d5eceSKris Buschelman 16849c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16859c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1686c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16879c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 16889c097c71SKris Buschelman 16899c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 16904aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1691589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 16929c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1693a23d5eceSKris Buschelman 1694a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1695a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1696a23d5eceSKris Buschelman 1697a23d5eceSKris Buschelman PetscFunctionReturn(0); 1698a23d5eceSKris Buschelman } 1699a23d5eceSKris Buschelman EXTERN_C_END 1700a23d5eceSKris Buschelman 17010bad9183SKris Buschelman /*MC 1702fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 17030bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 17040bad9183SKris Buschelman 17050bad9183SKris Buschelman Options Database Keys: 17060bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17070bad9183SKris Buschelman 17080bad9183SKris Buschelman Level: beginner 17090bad9183SKris Buschelman 17100bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17110bad9183SKris Buschelman M*/ 17120bad9183SKris Buschelman 1713a23d5eceSKris Buschelman EXTERN_C_BEGIN 1714a23d5eceSKris Buschelman #undef __FUNCT__ 17154a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1716dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1717b5df2d14SHong Zhang { 1718b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1719dfbe8321SBarry Smith PetscErrorCode ierr; 1720b5df2d14SHong Zhang PetscTruth flg; 1721b5df2d14SHong Zhang 1722b5df2d14SHong Zhang PetscFunctionBegin; 1723b5df2d14SHong Zhang 1724b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1725b0a32e0cSBarry Smith B->data = (void*)b; 1726b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1727b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1728b5df2d14SHong Zhang 1729b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1730b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1731b5df2d14SHong Zhang B->mapping = 0; 1732b5df2d14SHong Zhang B->factor = 0; 1733b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1736b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1737b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1738b5df2d14SHong Zhang 1739b5df2d14SHong Zhang /* build local table of row and column ownerships */ 17401302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1741273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1742273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 17431302d50aSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1744b5df2d14SHong Zhang 1745b5df2d14SHong Zhang /* build cache for off array entries formed */ 1746b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1747b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1748b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1749b5df2d14SHong Zhang b->garray = PETSC_NULL; 1750b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1751b5df2d14SHong Zhang 1752f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1753b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 175464a35ccbSBarry Smith b->setvalueslen = 0; 1755b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1756b5df2d14SHong Zhang #endif 1757b5df2d14SHong Zhang 1758b5df2d14SHong Zhang /* stuff used in block assembly */ 1759b5df2d14SHong Zhang b->barray = 0; 1760b5df2d14SHong Zhang 1761b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1762b5df2d14SHong Zhang b->lvec = 0; 1763b5df2d14SHong Zhang b->Mvctx = 0; 176440781036SHong Zhang b->slvec0 = 0; 176540781036SHong Zhang b->slvec0b = 0; 176640781036SHong Zhang b->slvec1 = 0; 176740781036SHong Zhang b->slvec1a = 0; 176840781036SHong Zhang b->slvec1b = 0; 176940781036SHong Zhang b->sMvctx = 0; 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1772b5df2d14SHong Zhang b->rowindices = 0; 1773b5df2d14SHong Zhang b->rowvalues = 0; 1774b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1775b5df2d14SHong Zhang 1776b5df2d14SHong Zhang /* hash table stuff */ 1777b5df2d14SHong Zhang b->ht = 0; 1778b5df2d14SHong Zhang b->hd = 0; 1779b5df2d14SHong Zhang b->ht_size = 0; 1780b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1781b5df2d14SHong Zhang b->ht_fact = 0; 1782b5df2d14SHong Zhang b->ht_total_ct = 0; 1783b5df2d14SHong Zhang b->ht_insert_ct = 0; 1784b5df2d14SHong Zhang 1785e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1786b5df2d14SHong Zhang if (flg) { 1787f6275e2eSBarry Smith PetscReal fact = 1.39; 1788b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1789e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1790b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1791b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1792b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1793b5df2d14SHong Zhang } 1794b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1795b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1796b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1797b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1798b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1799b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1800b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1801b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1802b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1803a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1804a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1805a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 180623ce1328SBarry Smith B->symmetric = PETSC_TRUE; 180723ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 180823ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 180923ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1810b5df2d14SHong Zhang PetscFunctionReturn(0); 1811b5df2d14SHong Zhang } 1812273d9f13SBarry Smith EXTERN_C_END 1813b5df2d14SHong Zhang 1814209238afSKris Buschelman /*MC 1815002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1816209238afSKris Buschelman 1817209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1818209238afSKris Buschelman and MATMPISBAIJ otherwise. 1819209238afSKris Buschelman 1820209238afSKris Buschelman Options Database Keys: 1821209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1822209238afSKris Buschelman 1823209238afSKris Buschelman Level: beginner 1824209238afSKris Buschelman 1825209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1826209238afSKris Buschelman M*/ 1827209238afSKris Buschelman 1828209238afSKris Buschelman EXTERN_C_BEGIN 1829209238afSKris Buschelman #undef __FUNCT__ 1830209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1831dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1832dfbe8321SBarry Smith { 18336849ba73SBarry Smith PetscErrorCode ierr; 18341302d50aSBarry Smith PetscMPIInt size; 1835209238afSKris Buschelman 1836209238afSKris Buschelman PetscFunctionBegin; 1837209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1838209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1839209238afSKris Buschelman if (size == 1) { 1840209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1841209238afSKris Buschelman } else { 1842209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1843209238afSKris Buschelman } 1844209238afSKris Buschelman PetscFunctionReturn(0); 1845209238afSKris Buschelman } 1846209238afSKris Buschelman EXTERN_C_END 1847209238afSKris Buschelman 18484a2ae208SSatish Balay #undef __FUNCT__ 18494a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1850b5df2d14SHong Zhang /*@C 1851b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1852b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1853b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1854b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang Collective on Mat 1857b5df2d14SHong Zhang 1858b5df2d14SHong Zhang Input Parameters: 1859b5df2d14SHong Zhang + A - the matrix 1860b5df2d14SHong Zhang . bs - size of blockk 1861b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1862b5df2d14SHong Zhang submatrix (same for all local rows) 1863b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18646d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18656d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18666d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1867b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1868b5df2d14SHong Zhang submatrix (same for all local rows). 1869b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1870b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1871b5df2d14SHong Zhang each block row) or PETSC_NULL. 1872b5df2d14SHong Zhang 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang Options Database Keys: 1875b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1876b5df2d14SHong Zhang block calculations (much slower) 1877b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1878b5df2d14SHong Zhang 1879b5df2d14SHong Zhang Notes: 1880b5df2d14SHong Zhang 1881b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1882b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1883b5df2d14SHong Zhang 1884b5df2d14SHong Zhang Storage Information: 1885b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1886b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1887b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1888b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1889b5df2d14SHong Zhang 1890b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1891b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1892b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1893b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1894b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1895b5df2d14SHong Zhang 1896b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1897b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1898b5df2d14SHong Zhang 1899b5df2d14SHong Zhang .vb 1900b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1901b5df2d14SHong Zhang ------------------- 1902b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1903b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1904b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1905b5df2d14SHong Zhang ------------------- 1906b5df2d14SHong Zhang .ve 1907b5df2d14SHong Zhang 1908b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1909b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19106d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19116d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1912b5df2d14SHong Zhang 19136d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19146d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1915b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1916b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1917b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1918b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1919b5df2d14SHong Zhang matrices. 1920b5df2d14SHong Zhang 1921b5df2d14SHong Zhang Level: intermediate 1922b5df2d14SHong Zhang 1923b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1924b5df2d14SHong Zhang 1925b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1926b5df2d14SHong Zhang @*/ 19271302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1928b5df2d14SHong Zhang { 19291302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1930b5df2d14SHong Zhang 1931b5df2d14SHong Zhang PetscFunctionBegin; 1932a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1933a23d5eceSKris Buschelman if (f) { 1934a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1935b5df2d14SHong Zhang } 1936b5df2d14SHong Zhang PetscFunctionReturn(0); 1937b5df2d14SHong Zhang } 1938b5df2d14SHong Zhang 19394a2ae208SSatish Balay #undef __FUNCT__ 19404a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1941a30f8f8cSSatish Balay /*@C 1942a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1943a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1944a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1945a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1946a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1947a30f8f8cSSatish Balay 1948a30f8f8cSSatish Balay Collective on MPI_Comm 1949a30f8f8cSSatish Balay 1950a30f8f8cSSatish Balay Input Parameters: 1951a30f8f8cSSatish Balay + comm - MPI communicator 1952a30f8f8cSSatish Balay . bs - size of blockk 1953a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1954a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1955a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1956a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1957a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1958a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1959a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1960a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1961a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1962a30f8f8cSSatish Balay submatrix (same for all local rows) 1963a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19646d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19656d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19666d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1967a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1968a30f8f8cSSatish Balay submatrix (same for all local rows). 1969a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1970a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1971a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1972a30f8f8cSSatish Balay 1973a30f8f8cSSatish Balay Output Parameter: 1974a30f8f8cSSatish Balay . A - the matrix 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay Options Database Keys: 1977a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1978a30f8f8cSSatish Balay block calculations (much slower) 1979a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1980a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1981a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1982a30f8f8cSSatish Balay 1983a30f8f8cSSatish Balay Notes: 1984a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1985a30f8f8cSSatish Balay (possibly both). 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1988a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1989a30f8f8cSSatish Balay 1990a30f8f8cSSatish Balay Storage Information: 1991a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1992a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1993a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1994a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1995a30f8f8cSSatish Balay 1996a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1997a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1998a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1999a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2000a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2003a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay .vb 2006a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2007a30f8f8cSSatish Balay ------------------- 2008a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2009a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2010a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2011a30f8f8cSSatish Balay ------------------- 2012a30f8f8cSSatish Balay .ve 2013a30f8f8cSSatish Balay 2014a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2015a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20166d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20176d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2018a30f8f8cSSatish Balay 20196d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20206d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2021a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2022a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2023a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2024a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2025a30f8f8cSSatish Balay matrices. 2026a30f8f8cSSatish Balay 2027a30f8f8cSSatish Balay Level: intermediate 2028a30f8f8cSSatish Balay 2029a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2030a30f8f8cSSatish Balay 2031a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2032a30f8f8cSSatish Balay @*/ 2033a30f8f8cSSatish Balay 20341302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2035a30f8f8cSSatish Balay { 20366849ba73SBarry Smith PetscErrorCode ierr; 20371302d50aSBarry Smith PetscMPIInt size; 2038a30f8f8cSSatish Balay 2039a30f8f8cSSatish Balay PetscFunctionBegin; 2040b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2041273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2042273d9f13SBarry Smith if (size > 1) { 2043b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2044b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2045273d9f13SBarry Smith } else { 2046273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2047273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2048273d9f13SBarry Smith } 2049a30f8f8cSSatish Balay PetscFunctionReturn(0); 2050a30f8f8cSSatish Balay } 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay 20534a2ae208SSatish Balay #undef __FUNCT__ 20544a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2056a30f8f8cSSatish Balay { 2057a30f8f8cSSatish Balay Mat mat; 2058a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2059dfbe8321SBarry Smith PetscErrorCode ierr; 20601302d50aSBarry Smith PetscInt len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs; 2061387bc808SHong Zhang PetscScalar *array; 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay PetscFunctionBegin; 2064a30f8f8cSSatish Balay *newmat = 0; 2065b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2066be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20671d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2068e1b6402fSHong Zhang 206982327fa8SHong Zhang mat->factor = matin->factor; 2070273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 207182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20727fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20737fff6886SHong Zhang 2074b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2075a30f8f8cSSatish Balay a->bs = oldmat->bs; 2076a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2077a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2078a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2079a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2080a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2081a30f8f8cSSatish Balay 2082a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2083a30f8f8cSSatish Balay a->rend = oldmat->rend; 2084a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2085a30f8f8cSSatish Balay a->cend = oldmat->cend; 2086a30f8f8cSSatish Balay a->size = oldmat->size; 2087a30f8f8cSSatish Balay a->rank = oldmat->rank; 2088a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2089a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2090a30f8f8cSSatish Balay a->rowindices = 0; 2091a30f8f8cSSatish Balay a->rowvalues = 0; 2092a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2093a30f8f8cSSatish Balay a->barray = 0; 2094a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2095a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2096a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2097a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2098a30f8f8cSSatish Balay 2099a30f8f8cSSatish Balay /* hash table stuff */ 2100a30f8f8cSSatish Balay a->ht = 0; 2101a30f8f8cSSatish Balay a->hd = 0; 2102a30f8f8cSSatish Balay a->ht_size = 0; 2103a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2104a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2105a30f8f8cSSatish Balay a->ht_total_ct = 0; 2106a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2107a30f8f8cSSatish Balay 21081302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2109a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay if (oldmat->colmap) { 2112a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2113a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2114a30f8f8cSSatish Balay #else 21151302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 21161302d50aSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt)); 21171302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2118a30f8f8cSSatish Balay #endif 2119a30f8f8cSSatish Balay } else a->colmap = 0; 2120387bc808SHong Zhang 2121a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21221302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 21231302d50aSBarry Smith PetscLogObjectMemory(mat,len*sizeof(PetscInt)); 21241302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2125a30f8f8cSSatish Balay } else a->garray = 0; 2126a30f8f8cSSatish Balay 2127a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2128b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2129a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2130b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 213182327fa8SHong Zhang 213282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2133387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 213482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2135387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2136387bc808SHong Zhang 2137387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21381ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2139387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2140387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21411ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21421ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2143387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21441ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 2145387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2146387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2147387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2148387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2149387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2150387bc808SHong Zhang 2151387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2152387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2153387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2154387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 215582327fa8SHong Zhang 2156a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2157b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2158a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2159b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2160b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay *newmat = mat; 2162a30f8f8cSSatish Balay PetscFunctionReturn(0); 2163a30f8f8cSSatish Balay } 2164a30f8f8cSSatish Balay 2165a30f8f8cSSatish Balay #include "petscsys.h" 2166a30f8f8cSSatish Balay 21674a2ae208SSatish Balay #undef __FUNCT__ 21684a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2169dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2170a30f8f8cSSatish Balay { 2171a30f8f8cSSatish Balay Mat A; 21726849ba73SBarry Smith PetscErrorCode ierr; 21731302d50aSBarry Smith PetscInt i,nz,j,rstart,rend,fd; 217487828ca2SBarry Smith PetscScalar *vals,*buf; 2175a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2176a30f8f8cSSatish Balay MPI_Status status; 21771302d50aSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 21781302d50aSBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 21791302d50aSBarry Smith PetscInt *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 21801302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21811302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21821302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 2183a30f8f8cSSatish Balay 2184a30f8f8cSSatish Balay PetscFunctionBegin; 2185b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay 2187a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay if (!rank) { 2190b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2191a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2192552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2193a30f8f8cSSatish Balay if (header[3] < 0) { 219429bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2195a30f8f8cSSatish Balay } 2196a30f8f8cSSatish Balay } 2197a30f8f8cSSatish Balay 2198a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2200a30f8f8cSSatish Balay 220129bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2202a30f8f8cSSatish Balay 2203a30f8f8cSSatish Balay /* 2204a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2205a30f8f8cSSatish Balay divisible by the blocksize 2206a30f8f8cSSatish Balay */ 2207a30f8f8cSSatish Balay Mbs = M/bs; 2208a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2209a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2210a30f8f8cSSatish Balay else Mbs++; 2211a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2212b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2213a30f8f8cSSatish Balay } 2214a30f8f8cSSatish Balay 2215a30f8f8cSSatish Balay /* determine ownership of all rows */ 2216a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2217a30f8f8cSSatish Balay m = mbs*bs; 22181302d50aSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay browners = rowners + size + 1; 2220a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay rowners[0] = 0; 2222a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2223a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2224a30f8f8cSSatish Balay rstart = rowners[rank]; 2225a30f8f8cSSatish Balay rend = rowners[rank+1]; 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22281302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay if (!rank) { 22301302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 22331302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&sndcounts);CHKERRQ(ierr); 2234a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2235a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2236a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2237a30f8f8cSSatish Balay } else { 2238a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay 22410222edb1SHong Zhang if (!rank) { /* procs[0] */ 2242a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22431302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22441302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2245a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2246a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2247a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2248a30f8f8cSSatish Balay } 2249a30f8f8cSSatish Balay } 2250a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay 2252a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2253a30f8f8cSSatish Balay maxnz = 0; 2254a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2255a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2256a30f8f8cSSatish Balay } 22571302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay 2259a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2260a30f8f8cSSatish Balay nz = procsnz[0]; 22611302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2262a30f8f8cSSatish Balay mycols = ibuf; 2263a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2264a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2266a30f8f8cSSatish Balay 2267a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2268a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2269a30f8f8cSSatish Balay nz = procsnz[i]; 2270a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2271a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay } 2273a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2274a30f8f8cSSatish Balay if (size != 1) { 2275a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2276a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2277a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2278a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay } 2280a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22810222edb1SHong Zhang } else { /* procs[i], i>0 */ 2282a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2283a30f8f8cSSatish Balay nz = 0; 2284a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2285a30f8f8cSSatish Balay nz += locrowlens[i]; 2286a30f8f8cSSatish Balay } 22871302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2288a30f8f8cSSatish Balay mycols = ibuf; 2289a30f8f8cSSatish Balay /* receive message of column indices*/ 2290a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 229229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2293a30f8f8cSSatish Balay } 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22961302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2297a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22981302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22991302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2300a30f8f8cSSatish Balay masked1 = mask + Mbs; 2301a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2302a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2303a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2304a30f8f8cSSatish Balay dcount = 0; 2305a30f8f8cSSatish Balay odcount = 0; 2306a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2307a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2308a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23090222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2310a30f8f8cSSatish Balay if (!mask[tmp]) { 2311a30f8f8cSSatish Balay mask[tmp] = 1; 23120222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23130222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2314a30f8f8cSSatish Balay } 2315a30f8f8cSSatish Balay } 2316a30f8f8cSSatish Balay rowcount++; 2317a30f8f8cSSatish Balay } 2318a30f8f8cSSatish Balay 23190222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23200222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2321a30f8f8cSSatish Balay 2322a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2323a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2324a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2325a30f8f8cSSatish Balay } 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay /* create our matrix */ 232822191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 232922191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 233022191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2331273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay 2333a30f8f8cSSatish Balay if (!rank) { 233487828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2335a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2336a30f8f8cSSatish Balay nz = procsnz[0]; 2337a30f8f8cSSatish Balay vals = buf; 2338a30f8f8cSSatish Balay mycols = ibuf; 2339a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2340a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2342a30f8f8cSSatish Balay 2343a30f8f8cSSatish Balay /* insert into matrix */ 2344a30f8f8cSSatish Balay jj = rstart*bs; 2345a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23467e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2347a30f8f8cSSatish Balay mycols += locrowlens[i]; 2348a30f8f8cSSatish Balay vals += locrowlens[i]; 2349a30f8f8cSSatish Balay jj++; 2350a30f8f8cSSatish Balay } 23517e06b45fSHong Zhang 2352a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2353a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2354a30f8f8cSSatish Balay nz = procsnz[i]; 2355a30f8f8cSSatish Balay vals = buf; 2356a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2357a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay } 2359a30f8f8cSSatish Balay /* the last proc */ 2360a30f8f8cSSatish Balay if (size != 1){ 2361a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2362a30f8f8cSSatish Balay vals = buf; 2363a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2365a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay } 2367a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23687e06b45fSHong Zhang 2369a30f8f8cSSatish Balay } else { 2370a30f8f8cSSatish Balay /* receive numeric values */ 237187828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2372a30f8f8cSSatish Balay 2373a30f8f8cSSatish Balay /* receive message of values*/ 2374a30f8f8cSSatish Balay vals = buf; 2375a30f8f8cSSatish Balay mycols = ibuf; 2376a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2377a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2379a30f8f8cSSatish Balay 2380a30f8f8cSSatish Balay /* insert into matrix */ 2381a30f8f8cSSatish Balay jj = rstart*bs; 2382a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2383a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay mycols += locrowlens[i]; 2385a30f8f8cSSatish Balay vals += locrowlens[i]; 2386a30f8f8cSSatish Balay jj++; 2387a30f8f8cSSatish Balay } 2388a30f8f8cSSatish Balay } 23897e06b45fSHong Zhang 2390a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2391a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2392a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2393a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2394a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2395a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2396a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2397a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239822191285SKris Buschelman *newmat = A; 2399a30f8f8cSSatish Balay PetscFunctionReturn(0); 2400a30f8f8cSSatish Balay } 2401a30f8f8cSSatish Balay 24024a2ae208SSatish Balay #undef __FUNCT__ 24034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2404a30f8f8cSSatish Balay /*@ 2405a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay Input Parameters: 2408a30f8f8cSSatish Balay . mat - the matrix 2409a30f8f8cSSatish Balay . fact - factor 2410a30f8f8cSSatish Balay 2411a30f8f8cSSatish Balay Collective on Mat 2412a30f8f8cSSatish Balay 2413a30f8f8cSSatish Balay Level: advanced 2414a30f8f8cSSatish Balay 2415a30f8f8cSSatish Balay Notes: 2416a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2417a30f8f8cSSatish Balay 2418a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2419a30f8f8cSSatish Balay 2420a30f8f8cSSatish Balay .seealso: MatSetOption() 2421a30f8f8cSSatish Balay @*/ 2422dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2423a30f8f8cSSatish Balay { 2424a30f8f8cSSatish Balay PetscFunctionBegin; 24251302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format"); 242696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2427a30f8f8cSSatish Balay } 242824d5174aSHong Zhang 24294a2ae208SSatish Balay #undef __FUNCT__ 24304a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2431dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 243224d5174aSHong Zhang { 243324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2434f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2435ca54ac64SHong Zhang PetscReal atmp; 243687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2437dfbe8321SBarry Smith PetscErrorCode ierr; 24381302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24391302d50aSBarry Smith PetscMPIInt rank,size; 24401302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 244187828ca2SBarry Smith PetscScalar *va; 24428a1c53f2SBarry Smith MatScalar *ba; 2443f4c0e9e4SHong Zhang MPI_Status stat; 244424d5174aSHong Zhang 244524d5174aSHong Zhang PetscFunctionBegin; 2446d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24471ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2448f4c0e9e4SHong Zhang 244956faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 245056faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2451f4c0e9e4SHong Zhang 2452f4c0e9e4SHong Zhang bs = a->bs; 2453f4c0e9e4SHong Zhang mbs = a->mbs; 2454f4c0e9e4SHong Zhang Mbs = a->Mbs; 2455f4c0e9e4SHong Zhang ba = b->a; 2456f4c0e9e4SHong Zhang bi = b->i; 2457f4c0e9e4SHong Zhang bj = b->j; 2458f4c0e9e4SHong Zhang 2459f4c0e9e4SHong Zhang /* find ownerships */ 2460f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2461f4c0e9e4SHong Zhang 2462f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 246382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2464ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2465f4c0e9e4SHong Zhang 2466f4c0e9e4SHong Zhang /* row_max for B */ 2467b8475685SHong Zhang if (rank != size-1){ 2468f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2469f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2470f4c0e9e4SHong Zhang brow = bs*i; 2471f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2472f4c0e9e4SHong Zhang bcol = bs*(*bj); 2473f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2474ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 247504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2476f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2477f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2478ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2479ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2480f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2481f4c0e9e4SHong Zhang } 2482f4c0e9e4SHong Zhang } 2483f4c0e9e4SHong Zhang bj++; 2484f4c0e9e4SHong Zhang } 2485f4c0e9e4SHong Zhang } 2486f4c0e9e4SHong Zhang 2487f4c0e9e4SHong Zhang /* send values to its owners */ 2488f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2489f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2490ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 249156faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2492ca54ac64SHong Zhang } 2493f4c0e9e4SHong Zhang } 2494f4c0e9e4SHong Zhang 2495f4c0e9e4SHong Zhang /* receive values */ 2496ca54ac64SHong Zhang if (rank){ 2497f4c0e9e4SHong Zhang rvalues = work; 2498ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2499f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 250056faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2501f4c0e9e4SHong Zhang /* process values */ 2502f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2503ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2504f4c0e9e4SHong Zhang } 2505f4c0e9e4SHong Zhang } 2506ca54ac64SHong Zhang } 2507f4c0e9e4SHong Zhang 25081ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2509ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 251024d5174aSHong Zhang PetscFunctionReturn(0); 251124d5174aSHong Zhang } 25122798e883SHong Zhang 25132798e883SHong Zhang #undef __FUNCT__ 25142798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 25151302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25162798e883SHong Zhang { 25172798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2518dfbe8321SBarry Smith PetscErrorCode ierr; 25191302d50aSBarry Smith PetscInt mbs=mat->mbs,bs=mat->bs; 2520ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2521ffe4fb16SHong Zhang Vec bb1; 2522ffe4fb16SHong Zhang 2523ffe4fb16SHong Zhang PetscFunctionBegin; 2524*77431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2525ffe4fb16SHong Zhang if (bs > 1) 2526ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2527ffe4fb16SHong Zhang 2528ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2529ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2530ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2531ffe4fb16SHong Zhang its--; 2532ffe4fb16SHong Zhang } 2533ffe4fb16SHong Zhang 2534ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang while (its--){ 2536ffe4fb16SHong Zhang 2537ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2538ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang 2540ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25411ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25421ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25441ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang 2548ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25491ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25501ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2551ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25521ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2555ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25581ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25591ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2560ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2561ffe4fb16SHong Zhang 2562ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2563ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2564ffe4fb16SHong Zhang 2565ffe4fb16SHong Zhang /* local diagonal sweep */ 2566ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2567ffe4fb16SHong Zhang } 2568ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2569ffe4fb16SHong Zhang } else { 2570ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2571ffe4fb16SHong Zhang } 2572ffe4fb16SHong Zhang PetscFunctionReturn(0); 2573ffe4fb16SHong Zhang } 2574ffe4fb16SHong Zhang 2575ffe4fb16SHong Zhang #undef __FUNCT__ 2576ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25771302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2578ffe4fb16SHong Zhang { 2579ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2580dfbe8321SBarry Smith PetscErrorCode ierr; 2581d05c616dSSatish Balay PetscScalar mone=-1.0; 25822798e883SHong Zhang Vec lvec1,bb1; 25832798e883SHong Zhang 25842798e883SHong Zhang PetscFunctionBegin; 2585*77431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 25862798e883SHong Zhang if (mat->bs > 1) 25872798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25882798e883SHong Zhang 2589c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25902798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2591bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25922798e883SHong Zhang its--; 25932798e883SHong Zhang } 25942798e883SHong Zhang 25952798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25962798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25972798e883SHong Zhang while (its--){ 25982798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25992798e883SHong Zhang 26002798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26012798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 26022798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 26032798e883SHong Zhang 26042798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 26052798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 26062798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26072798e883SHong Zhang 26082798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 26092798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 26102798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26112798e883SHong Zhang 26122798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26132798e883SHong Zhang 2614c14dc6b6SHong Zhang /* diagonal sweep */ 2615bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26162798e883SHong Zhang } 26172798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26182798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2619c14dc6b6SHong Zhang } else { 2620c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2621c14dc6b6SHong Zhang } 26222798e883SHong Zhang PetscFunctionReturn(0); 26232798e883SHong Zhang } 26242798e883SHong Zhang 2625