xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 77431f27ef6a796c710ee53da3b02f01a7247aeb)
1a30f8f8cSSatish Balay 
2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
3a30f8f8cSSatish Balay #include "mpisbaij.h"
4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
5a30f8f8cSSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101*77431f27SBarry Smith       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102a30f8f8cSSatish Balay       if (nrow >= rmax) { \
103a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1041302d50aSBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
105a30f8f8cSSatish Balay         MatScalar *new_a; \
106a30f8f8cSSatish Balay  \
107*77431f27SBarry Smith         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
108a30f8f8cSSatish Balay  \
109a30f8f8cSSatish Balay         /* malloc new storage space */ \
1101302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \
11182502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1121302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
113a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
114a30f8f8cSSatish Balay  \
115a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
116a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
117a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
1181302d50aSBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
119a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1201302d50aSBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
121a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12287828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
124a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
125a30f8f8cSSatish Balay         /* free up old matrix storage */ \
126a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
127a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
128a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
129a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
130a30f8f8cSSatish Balay         } \
131a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
132a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
133a30f8f8cSSatish Balay  \
134a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
135a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
1361302d50aSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
1376c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE; \
138a30f8f8cSSatish Balay         a->reallocs++; \
1396c6c5352SBarry Smith         a->nz++; \
140a30f8f8cSSatish Balay       } \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       a_noinsert:; \
151a30f8f8cSSatish Balay     ailen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
154a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
155a30f8f8cSSatish Balay { \
156a30f8f8cSSatish Balay     brow = row/bs;  \
157a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
158a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
159a30f8f8cSSatish Balay       bcol = col/bs; \
160a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
161a30f8f8cSSatish Balay       low = 0; high = nrow; \
162a30f8f8cSSatish Balay       while (high-low > 3) { \
163a30f8f8cSSatish Balay         t = (low+high)/2; \
164a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
165a30f8f8cSSatish Balay         else              low  = t; \
166a30f8f8cSSatish Balay       } \
167a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
168a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
169a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
170a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
171a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
172a30f8f8cSSatish Balay           else                    *bap  = value;  \
173a30f8f8cSSatish Balay           goto b_noinsert; \
174a30f8f8cSSatish Balay         } \
175a30f8f8cSSatish Balay       } \
176a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
177*77431f27SBarry Smith       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
178a30f8f8cSSatish Balay       if (nrow >= rmax) { \
179a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
1801302d50aSBarry Smith         PetscInt       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
181a30f8f8cSSatish Balay         MatScalar *new_a; \
182a30f8f8cSSatish Balay  \
183*77431f27SBarry Smith         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
184a30f8f8cSSatish Balay  \
185a30f8f8cSSatish Balay         /* malloc new storage space */ \
1861302d50aSBarry Smith         len   = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \
18782502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
1881302d50aSBarry Smith         new_j = (PetscInt*)(new_a + bs2*new_nz); \
189a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
190a30f8f8cSSatish Balay  \
191a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
192a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
193a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
1941302d50aSBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
195a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
1961302d50aSBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
197a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
198a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
199a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
200a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
201a30f8f8cSSatish Balay         /* free up old matrix storage */ \
202a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
203a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
204a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
205a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
206a30f8f8cSSatish Balay         } \
207a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
208a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
209a30f8f8cSSatish Balay  \
210a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
211a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
2121302d50aSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \
213a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
214a30f8f8cSSatish Balay         b->reallocs++; \
215a30f8f8cSSatish Balay         b->nz++; \
216a30f8f8cSSatish Balay       } \
217a30f8f8cSSatish Balay       N = nrow++ - 1;  \
218a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
219a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
220a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
221a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
222a30f8f8cSSatish Balay       } \
223a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
224a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
225a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
226a30f8f8cSSatish Balay       b_noinsert:; \
227a30f8f8cSSatish Balay     bilen[brow] = nrow; \
228a30f8f8cSSatish Balay }
229a30f8f8cSSatish Balay #endif
230a30f8f8cSSatish Balay 
231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2324a2ae208SSatish Balay #undef __FUNCT__
2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
235a30f8f8cSSatish Balay {
236a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
237dfbe8321SBarry Smith   PetscErrorCode ierr;
2381302d50aSBarry Smith   PetscInt       i,N = m*n;
239a30f8f8cSSatish Balay   MatScalar      *vsingle;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   PetscFunctionBegin;
242a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
243a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
24482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
245a30f8f8cSSatish Balay     b->setvalueslen  = N;
246a30f8f8cSSatish Balay   }
247a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
248a30f8f8cSSatish Balay 
249a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
250a30f8f8cSSatish Balay     vsingle[i] = v[i];
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
253a30f8f8cSSatish Balay   PetscFunctionReturn(0);
254a30f8f8cSSatish Balay }
255a30f8f8cSSatish Balay 
2564a2ae208SSatish Balay #undef __FUNCT__
2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
259a30f8f8cSSatish Balay {
260a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
261dfbe8321SBarry Smith   PetscErrorCode ierr;
2621302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
263a30f8f8cSSatish Balay   MatScalar      *vsingle;
264a30f8f8cSSatish Balay 
265a30f8f8cSSatish Balay   PetscFunctionBegin;
266a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
267a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
26882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
269a30f8f8cSSatish Balay     b->setvalueslen  = N;
270a30f8f8cSSatish Balay   }
271a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
272a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
273a30f8f8cSSatish Balay     vsingle[i] = v[i];
274a30f8f8cSSatish Balay   }
275a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
276a30f8f8cSSatish Balay   PetscFunctionReturn(0);
277a30f8f8cSSatish Balay }
278a30f8f8cSSatish Balay 
2794a2ae208SSatish Balay #undef __FUNCT__
2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
2811302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
282a30f8f8cSSatish Balay {
283a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
284dfbe8321SBarry Smith   PetscErrorCode ierr;
2851302d50aSBarry Smith   PetscInt       i,N = m*n;
286a30f8f8cSSatish Balay   MatScalar      *vsingle;
287a30f8f8cSSatish Balay 
288a30f8f8cSSatish Balay   PetscFunctionBegin;
2891302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
2904d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
291a30f8f8cSSatish Balay }
292a30f8f8cSSatish Balay 
2934a2ae208SSatish Balay #undef __FUNCT__
2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
2951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
296a30f8f8cSSatish Balay {
297a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
298dfbe8321SBarry Smith   PetscErrorCode ierr;
2991302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
300a30f8f8cSSatish Balay   MatScalar      *vsingle;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   PetscFunctionBegin;
3031302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
3044d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
305a30f8f8cSSatish Balay }
306a30f8f8cSSatish Balay #endif
307a30f8f8cSSatish Balay 
308a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
309a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
310a30f8f8cSSatish Balay */
3114a2ae208SSatish Balay #undef __FUNCT__
312e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
3131302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
314a30f8f8cSSatish Balay {
315a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
316a30f8f8cSSatish Balay   MatScalar      value;
317b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
318dfbe8321SBarry Smith   PetscErrorCode ierr;
3191302d50aSBarry Smith   PetscInt       i,j,row,col;
3201302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
3211302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
3221302d50aSBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=baij->bs;
323a30f8f8cSSatish Balay 
324a30f8f8cSSatish Balay   /* Some Variables required in the macro */
325a30f8f8cSSatish Balay   Mat            A = baij->A;
326a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
3271302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
328a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
329a30f8f8cSSatish Balay 
330a30f8f8cSSatish Balay   Mat            B = baij->B;
331a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
3321302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
333a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
334a30f8f8cSSatish Balay 
3351302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
3361302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
337a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
338a30f8f8cSSatish Balay 
339a30f8f8cSSatish Balay   /* for stash */
3401302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
341f65c83cfSHong Zhang   MatScalar     *v_loc=0;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   PetscFunctionBegin;
344a30f8f8cSSatish Balay 
345a30f8f8cSSatish Balay   if(!baij->donotstash){
3461302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
34782502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
348a30f8f8cSSatish Balay   }
349a30f8f8cSSatish Balay 
350a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
351a30f8f8cSSatish Balay     if (im[i] < 0) continue;
352a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
353*77431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
354a30f8f8cSSatish Balay #endif
355a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
356a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
357a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
358f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
359a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
360a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
361a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
362a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
363a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
364a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
365a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
366a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
367a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
368*77431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
369a30f8f8cSSatish Balay #endif
370a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
371a30f8f8cSSatish Balay           if (mat->was_assembled) {
372a30f8f8cSSatish Balay             if (!baij->colmap) {
373653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
374a30f8f8cSSatish Balay             }
375a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
376a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
37771730473SSatish Balay             col  = col - 1;
378a30f8f8cSSatish Balay #else
37971730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
380a30f8f8cSSatish Balay #endif
381a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
382a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
383a30f8f8cSSatish Balay               col =  in[j];
384a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
385a30f8f8cSSatish Balay               B = baij->B;
386a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
387a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
388a30f8f8cSSatish Balay               ba=b->a;
38971730473SSatish Balay             } else col += in[j]%bs;
390a30f8f8cSSatish Balay           } else col = in[j];
391a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
392a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
393a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
394a30f8f8cSSatish Balay         }
395a30f8f8cSSatish Balay       }
396a30f8f8cSSatish Balay     } else {  /* off processor entry */
397a30f8f8cSSatish Balay       if (!baij->donotstash) {
398a30f8f8cSSatish Balay         n_loc = 0;
399a30f8f8cSSatish Balay         for (j=0; j<n; j++){
400f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
401a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
402a30f8f8cSSatish Balay           if (roworiented) {
403a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
404a30f8f8cSSatish Balay           } else {
405a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
406a30f8f8cSSatish Balay           }
407a30f8f8cSSatish Balay           n_loc++;
408a30f8f8cSSatish Balay         }
409a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
410a30f8f8cSSatish Balay       }
411a30f8f8cSSatish Balay     }
412a30f8f8cSSatish Balay   }
413a30f8f8cSSatish Balay 
414a30f8f8cSSatish Balay   if(!baij->donotstash){
415a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
416a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
417a30f8f8cSSatish Balay   }
418a30f8f8cSSatish Balay   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
422e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
4231302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
424a30f8f8cSSatish Balay {
4250880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
426f15d580aSBarry Smith   const MatScalar *value;
427f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4280880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
429dfbe8321SBarry Smith   PetscErrorCode  ierr;
4301302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
4311302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
4321302d50aSBarry Smith   PetscInt        cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
4330880e062SHong Zhang 
434a30f8f8cSSatish Balay   PetscFunctionBegin;
4350880e062SHong Zhang   if(!barray) {
4360880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4370880e062SHong Zhang     baij->barray = barray;
4380880e062SHong Zhang   }
4390880e062SHong Zhang 
4400880e062SHong Zhang   if (roworiented) {
4410880e062SHong Zhang     stepval = (n-1)*bs;
4420880e062SHong Zhang   } else {
4430880e062SHong Zhang     stepval = (m-1)*bs;
4440880e062SHong Zhang   }
4450880e062SHong Zhang   for (i=0; i<m; i++) {
4460880e062SHong Zhang     if (im[i] < 0) continue;
4470880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
448*77431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
4490880e062SHong Zhang #endif
4500880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4510880e062SHong Zhang       row = im[i] - rstart;
4520880e062SHong Zhang       for (j=0; j<n; j++) {
4530880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4540880e062SHong Zhang         if ((roworiented) && (n == 1)) {
455f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4560880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
457f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4580880e062SHong Zhang         } else { /* Here a copy is required */
4590880e062SHong Zhang           if (roworiented) {
4600880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4610880e062SHong Zhang           } else {
4620880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4630880e062SHong Zhang           }
4640880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4650880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4660880e062SHong Zhang               *barray++  = *value++;
4670880e062SHong Zhang             }
4680880e062SHong Zhang           }
4690880e062SHong Zhang           barray -=bs2;
4700880e062SHong Zhang         }
4710880e062SHong Zhang 
4720880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4730880e062SHong Zhang           col  = in[j] - cstart;
4740880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4750880e062SHong Zhang         }
4760880e062SHong Zhang         else if (in[j] < 0) continue;
4770880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
478*77431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
4790880e062SHong Zhang #endif
4800880e062SHong Zhang         else {
4810880e062SHong Zhang           if (mat->was_assembled) {
4820880e062SHong Zhang             if (!baij->colmap) {
483653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4840880e062SHong Zhang             }
4850880e062SHong Zhang 
4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4870880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4881302d50aSBarry Smith             { PetscInt data;
4890880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4900880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4910880e062SHong Zhang             }
4920880e062SHong Zhang #else
4930880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4940880e062SHong Zhang #endif
4950880e062SHong Zhang #endif
4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4970880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4980880e062SHong Zhang             col  = (col - 1)/bs;
4990880e062SHong Zhang #else
5000880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5010880e062SHong Zhang #endif
5020880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5030880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5040880e062SHong Zhang               col =  in[j];
5050880e062SHong Zhang             }
5060880e062SHong Zhang           }
5070880e062SHong Zhang           else col = in[j];
508e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5090880e062SHong Zhang         }
5100880e062SHong Zhang       }
5110880e062SHong Zhang     } else {
5120880e062SHong Zhang       if (!baij->donotstash) {
5130880e062SHong Zhang         if (roworiented) {
5140880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5150880e062SHong Zhang         } else {
5160880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5170880e062SHong Zhang         }
5180880e062SHong Zhang       }
5190880e062SHong Zhang     }
5200880e062SHong Zhang   }
5210880e062SHong Zhang   PetscFunctionReturn(0);
522a30f8f8cSSatish Balay }
523a30f8f8cSSatish Balay 
524a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
5251302d50aSBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
5261302d50aSBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
5271302d50aSBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
5284a2ae208SSatish Balay #undef __FUNCT__
5294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
5301302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
531a30f8f8cSSatish Balay {
532a30f8f8cSSatish Balay   PetscFunctionBegin;
5331302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
53496e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
535a30f8f8cSSatish Balay }
536a30f8f8cSSatish Balay 
5374a2ae208SSatish Balay #undef __FUNCT__
5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
5391302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
540a30f8f8cSSatish Balay {
541a30f8f8cSSatish Balay   PetscFunctionBegin;
5421302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
54396e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
544a30f8f8cSSatish Balay }
545a30f8f8cSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
549a30f8f8cSSatish Balay {
550f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5516849ba73SBarry Smith   PetscErrorCode ierr;
5521302d50aSBarry Smith   PetscInt       bs=baij->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
5531302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
554a30f8f8cSSatish Balay 
555a30f8f8cSSatish Balay   PetscFunctionBegin;
556a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
557*77431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
558*77431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
559a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
560a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
561a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
562*77431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
563*77431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
564a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
565a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
566c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay         } else {
568a30f8f8cSSatish Balay           if (!baij->colmap) {
569653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
570a30f8f8cSSatish Balay           }
571a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
572a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
573a30f8f8cSSatish Balay           data --;
574a30f8f8cSSatish Balay #else
575a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
576a30f8f8cSSatish Balay #endif
577a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
578a30f8f8cSSatish Balay           else {
579a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
580e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
581a30f8f8cSSatish Balay           }
582a30f8f8cSSatish Balay         }
583a30f8f8cSSatish Balay       }
584a30f8f8cSSatish Balay     } else {
58529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay  PetscFunctionReturn(0);
589a30f8f8cSSatish Balay }
590a30f8f8cSSatish Balay 
5914a2ae208SSatish Balay #undef __FUNCT__
5924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
593dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
594a30f8f8cSSatish Balay {
595a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
596dfbe8321SBarry Smith   PetscErrorCode ierr;
597a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
598a30f8f8cSSatish Balay 
599a30f8f8cSSatish Balay   PetscFunctionBegin;
600a30f8f8cSSatish Balay   if (baij->size == 1) {
601a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
602a30f8f8cSSatish Balay   } else {
603a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
604f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
605a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
606a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
607a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
608a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
609d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
610a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
611a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
612a30f8f8cSSatish Balay     } else {
61329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
614a30f8f8cSSatish Balay     }
615a30f8f8cSSatish Balay   }
616a30f8f8cSSatish Balay   PetscFunctionReturn(0);
617a30f8f8cSSatish Balay }
618a30f8f8cSSatish Balay 
619a30f8f8cSSatish Balay /*
620a30f8f8cSSatish Balay   Creates the hash table, and sets the table
621a30f8f8cSSatish Balay   This table is created only once.
622a30f8f8cSSatish Balay   If new entried need to be added to the matrix
623a30f8f8cSSatish Balay   then the hash table has to be destroyed and
624a30f8f8cSSatish Balay   recreated.
625a30f8f8cSSatish Balay */
6264a2ae208SSatish Balay #undef __FUNCT__
6274a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
628dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
629a30f8f8cSSatish Balay {
630a30f8f8cSSatish Balay   PetscFunctionBegin;
6311302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
63296e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
633a30f8f8cSSatish Balay }
634a30f8f8cSSatish Balay 
6354a2ae208SSatish Balay #undef __FUNCT__
6364a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
637dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
638a30f8f8cSSatish Balay {
639a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
640dfbe8321SBarry Smith   PetscErrorCode ierr;
6411302d50aSBarry Smith   PetscInt       nstash,reallocs;
642a30f8f8cSSatish Balay   InsertMode     addv;
643a30f8f8cSSatish Balay 
644a30f8f8cSSatish Balay   PetscFunctionBegin;
645a30f8f8cSSatish Balay   if (baij->donotstash) {
646a30f8f8cSSatish Balay     PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
650a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
651a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
65229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
653a30f8f8cSSatish Balay   }
654a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
657a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
658a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
659*77431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);
660a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
661*77431f27SBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);
662a30f8f8cSSatish Balay   PetscFunctionReturn(0);
663a30f8f8cSSatish Balay }
664a30f8f8cSSatish Balay 
6654a2ae208SSatish Balay #undef __FUNCT__
6664a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
667dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
668a30f8f8cSSatish Balay {
669a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
670a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
671a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
6726849ba73SBarry Smith   PetscErrorCode ierr;
6731302d50aSBarry Smith   PetscInt       i,j,rstart,ncols,n,flg,bs2=baij->bs2;
6741302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
675a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
676a30f8f8cSSatish Balay   MatScalar      *val;
677a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
678a30f8f8cSSatish Balay 
679a30f8f8cSSatish Balay   PetscFunctionBegin;
680a30f8f8cSSatish Balay 
681a30f8f8cSSatish Balay   if (!baij->donotstash) {
682a30f8f8cSSatish Balay     while (1) {
683a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
684a30f8f8cSSatish Balay       if (!flg) break;
685a30f8f8cSSatish Balay 
686a30f8f8cSSatish Balay       for (i=0; i<n;) {
687a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
688a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
689a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
690a30f8f8cSSatish Balay         else       ncols = n-i;
691a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
692a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
693a30f8f8cSSatish Balay         i = j;
694a30f8f8cSSatish Balay       }
695a30f8f8cSSatish Balay     }
696a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
697a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
698a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
699a30f8f8cSSatish Balay        restore the original flags */
700a30f8f8cSSatish Balay     r1 = baij->roworiented;
701a30f8f8cSSatish Balay     r2 = a->roworiented;
702a30f8f8cSSatish Balay     r3 = b->roworiented;
703a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
704a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
705a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
706a30f8f8cSSatish Balay     while (1) {
707a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
708a30f8f8cSSatish Balay       if (!flg) break;
709a30f8f8cSSatish Balay 
710a30f8f8cSSatish Balay       for (i=0; i<n;) {
711a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
712a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
713a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
714a30f8f8cSSatish Balay         else       ncols = n-i;
715a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
716a30f8f8cSSatish Balay         i = j;
717a30f8f8cSSatish Balay       }
718a30f8f8cSSatish Balay     }
719a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
720a30f8f8cSSatish Balay     baij->roworiented = r1;
721a30f8f8cSSatish Balay     a->roworiented    = r2;
722a30f8f8cSSatish Balay     b->roworiented    = r3;
723a30f8f8cSSatish Balay   }
724a30f8f8cSSatish Balay 
725a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
726a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
727a30f8f8cSSatish Balay 
728a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
729a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
730a30f8f8cSSatish Balay   /*
731a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
732a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
733a30f8f8cSSatish Balay   */
734a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
735a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
736a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
737c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
738a30f8f8cSSatish Balay     }
739a30f8f8cSSatish Balay   }
740a30f8f8cSSatish Balay 
741a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
74240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
743a30f8f8cSSatish Balay   }
744a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
745a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
748a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
749f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
750a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
751a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
752a30f8f8cSSatish Balay   }
753a30f8f8cSSatish Balay #endif
754a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
755c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
756a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
757a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
758a30f8f8cSSatish Balay   }
759a30f8f8cSSatish Balay 
760a30f8f8cSSatish Balay   if (baij->rowvalues) {
761a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
762a30f8f8cSSatish Balay     baij->rowvalues = 0;
763a30f8f8cSSatish Balay   }
7645222a1afSHong Zhang 
765a30f8f8cSSatish Balay   PetscFunctionReturn(0);
766a30f8f8cSSatish Balay }
767a30f8f8cSSatish Balay 
7684a2ae208SSatish Balay #undef __FUNCT__
7694a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
7706849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
771a30f8f8cSSatish Balay {
772a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
773dfbe8321SBarry Smith   PetscErrorCode    ierr;
7741302d50aSBarry Smith   PetscInt          bs = baij->bs;
7751302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
77632077d6dSBarry Smith   PetscTruth        iascii,isdraw;
777b0a32e0cSBarry Smith   PetscViewer       sviewer;
778f3ef73ceSBarry Smith   PetscViewerFormat format;
779a30f8f8cSSatish Balay 
780a30f8f8cSSatish Balay   PetscFunctionBegin;
78132077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
782fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
78332077d6dSBarry Smith   if (iascii) {
784b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
785456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
786a30f8f8cSSatish Balay       MatInfo info;
787a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
788a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
789*77431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
790*77431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
791*77431f27SBarry Smith               baij->bs,(PetscInt)info.memory);CHKERRQ(ierr);
792a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
793*77431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
794a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
795*77431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
796b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
797a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
798a30f8f8cSSatish Balay       PetscFunctionReturn(0);
799fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
800*77431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
801a30f8f8cSSatish Balay       PetscFunctionReturn(0);
802a30f8f8cSSatish Balay     }
803a30f8f8cSSatish Balay   }
804a30f8f8cSSatish Balay 
805a30f8f8cSSatish Balay   if (isdraw) {
806b0a32e0cSBarry Smith     PetscDraw       draw;
807a30f8f8cSSatish Balay     PetscTruth isnull;
808b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
809b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
810a30f8f8cSSatish Balay   }
811a30f8f8cSSatish Balay 
812a30f8f8cSSatish Balay   if (size == 1) {
813e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
814a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
815a30f8f8cSSatish Balay   } else {
816a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
817a30f8f8cSSatish Balay     Mat         A;
81865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
81965d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
8201302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
821a30f8f8cSSatish Balay     MatScalar   *a;
822a30f8f8cSSatish Balay 
823f204ca49SKris Buschelman     /* Should this be the same type as mat? */
824a30f8f8cSSatish Balay     if (!rank) {
825f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
826a30f8f8cSSatish Balay     } else {
827f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
828a30f8f8cSSatish Balay     }
829f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
830f204ca49SKris Buschelman     ierr = MatMPISBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
831b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
832a30f8f8cSSatish Balay 
833a30f8f8cSSatish Balay     /* copy over the A part */
83465d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
835a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
8361302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
837a30f8f8cSSatish Balay 
838a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
839a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
840a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
841a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
842a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
843a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
844a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
845a30f8f8cSSatish Balay           col++; a += bs;
846a30f8f8cSSatish Balay         }
847a30f8f8cSSatish Balay       }
848a30f8f8cSSatish Balay     }
849a30f8f8cSSatish Balay     /* copy over the B part */
85065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
85165d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
852a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
853a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
854a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
855a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
856a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
857a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
858a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
859a30f8f8cSSatish Balay           col++; a += bs;
860a30f8f8cSSatish Balay         }
861a30f8f8cSSatish Balay       }
862a30f8f8cSSatish Balay     }
863a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
864a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
865a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
866a30f8f8cSSatish Balay     /*
867a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
868b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
869a30f8f8cSSatish Balay     */
870b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
87165d70643SHong Zhang     if (!rank) {
872e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
873a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
874a30f8f8cSSatish Balay     }
875b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
876a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
877a30f8f8cSSatish Balay   }
878a30f8f8cSSatish Balay   PetscFunctionReturn(0);
879a30f8f8cSSatish Balay }
880a30f8f8cSSatish Balay 
8814a2ae208SSatish Balay #undef __FUNCT__
8824a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
883dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
884a30f8f8cSSatish Balay {
885dfbe8321SBarry Smith   PetscErrorCode ierr;
88632077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
887a30f8f8cSSatish Balay 
888a30f8f8cSSatish Balay   PetscFunctionBegin;
88932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
890fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
891b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
892fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
89332077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
894a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
895a30f8f8cSSatish Balay   } else {
8961302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
897a30f8f8cSSatish Balay   }
898a30f8f8cSSatish Balay   PetscFunctionReturn(0);
899a30f8f8cSSatish Balay }
900a30f8f8cSSatish Balay 
9014a2ae208SSatish Balay #undef __FUNCT__
9024a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
903dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
904a30f8f8cSSatish Balay {
905a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
906dfbe8321SBarry Smith   PetscErrorCode ierr;
907a30f8f8cSSatish Balay 
908a30f8f8cSSatish Balay   PetscFunctionBegin;
909a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
910*77431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
911a30f8f8cSSatish Balay #endif
912a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
913a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
914a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
915a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
916a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
917a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
918a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
919a30f8f8cSSatish Balay #else
920a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
921a30f8f8cSSatish Balay #endif
922a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
923a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
924a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
92540781036SHong Zhang   if (baij->slvec0) {
92640781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
92740781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
92840781036SHong Zhang   }
92940781036SHong Zhang   if (baij->slvec1) {
93040781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
93140781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
93240781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
93340781036SHong Zhang   }
93440781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
935a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
936a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
937a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
938a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
939a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
940a30f8f8cSSatish Balay #endif
941a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
942901853e0SKris Buschelman 
943901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
944901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
945901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
946901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
947a30f8f8cSSatish Balay   PetscFunctionReturn(0);
948a30f8f8cSSatish Balay }
949a30f8f8cSSatish Balay 
9504a2ae208SSatish Balay #undef __FUNCT__
951a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
952dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
953a9d4b620SHong Zhang {
954a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
955dfbe8321SBarry Smith   PetscErrorCode ierr;
9561302d50aSBarry Smith   PetscInt       nt,mbs=a->mbs,bs=a->bs;
957a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang   PetscFunctionBegin;
960a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
961a9d4b620SHong Zhang   if (nt != A->n) {
962a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
963a9d4b620SHong Zhang   }
964a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
965a9d4b620SHong Zhang   if (nt != A->m) {
966a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
967a9d4b620SHong Zhang   }
968a9d4b620SHong Zhang 
969a9d4b620SHong Zhang   /* diagonal part */
970a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
971a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
972a9d4b620SHong Zhang 
973a9d4b620SHong Zhang   /* subdiagonal part */
974a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
975a9d4b620SHong Zhang 
976a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9771ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9781ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
979a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9801ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
981a9d4b620SHong Zhang 
982a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9831ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
984a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
985a9d4b620SHong Zhang 
986a9d4b620SHong Zhang   /* supperdiagonal part */
987a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
988a9d4b620SHong Zhang 
989a9d4b620SHong Zhang   PetscFunctionReturn(0);
990a9d4b620SHong Zhang }
991a9d4b620SHong Zhang 
992a9d4b620SHong Zhang #undef __FUNCT__
99340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
994dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
995a30f8f8cSSatish Balay {
996a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
997dfbe8321SBarry Smith   PetscErrorCode ierr;
9981302d50aSBarry Smith   PetscInt       nt;
999a30f8f8cSSatish Balay 
1000a30f8f8cSSatish Balay   PetscFunctionBegin;
1001a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1002b5df2d14SHong Zhang   if (nt != A->n) {
100329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1004a30f8f8cSSatish Balay   }
1005a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1006b5df2d14SHong Zhang   if (nt != A->m) {
100729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1008a30f8f8cSSatish Balay   }
100965d70643SHong Zhang 
1010b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1011b941877fSHong Zhang   /* do diagonal part */
1012b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1013b941877fSHong Zhang   /* do supperdiagonal part */
1014b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1015b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1016b941877fSHong Zhang   /* do subdiagonal part */
1017b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1018b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1019b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
102065d70643SHong Zhang 
1021a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1026dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1027a30f8f8cSSatish Balay {
1028de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1029dfbe8321SBarry Smith   PetscErrorCode ierr;
10301302d50aSBarry Smith   PetscInt       mbs=a->mbs,bs=a->bs;
1031a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
1032a9d4b620SHong Zhang 
1033a9d4b620SHong Zhang   PetscFunctionBegin;
1034a9d4b620SHong Zhang   /*
103556faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
103656faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1037a9d4b620SHong Zhang   */
1038a9d4b620SHong Zhang   /* diagonal part */
1039a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1040a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1041a9d4b620SHong Zhang 
1042a9d4b620SHong Zhang   /* subdiagonal part */
1043a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1044a9d4b620SHong Zhang 
1045a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10461ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10471ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1048a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
10491ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1050a9d4b620SHong Zhang 
1051a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
10521ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1053a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1054a9d4b620SHong Zhang 
1055a9d4b620SHong Zhang   /* supperdiagonal part */
1056a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1057a9d4b620SHong Zhang 
1058a9d4b620SHong Zhang   PetscFunctionReturn(0);
1059a9d4b620SHong Zhang }
1060a9d4b620SHong Zhang 
1061a9d4b620SHong Zhang #undef __FUNCT__
1062a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1063dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1064a9d4b620SHong Zhang {
1065a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1066dfbe8321SBarry Smith   PetscErrorCode ierr;
1067a30f8f8cSSatish Balay 
1068a30f8f8cSSatish Balay   PetscFunctionBegin;
1069b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1070b941877fSHong Zhang   /* do diagonal part */
1071b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1072b941877fSHong Zhang   /* do supperdiagonal part */
1073b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1074de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1075de8b6608SHong Zhang 
1076b941877fSHong Zhang   /* do subdiagonal part */
1077a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1078a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1079a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1080aa482183SHong Zhang 
1081a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1082a30f8f8cSSatish Balay }
1083a30f8f8cSSatish Balay 
10844a2ae208SSatish Balay #undef __FUNCT__
10854a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1086dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1087a30f8f8cSSatish Balay {
1088dfbe8321SBarry Smith   PetscErrorCode ierr;
10895a7c0312SHong Zhang 
1090a30f8f8cSSatish Balay   PetscFunctionBegin;
10915a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
10925a7c0312SHong Zhang   PetscFunctionReturn(0);
1093a30f8f8cSSatish Balay }
1094a30f8f8cSSatish Balay 
10954a2ae208SSatish Balay #undef __FUNCT__
10964a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1097dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1098a30f8f8cSSatish Balay {
1099dfbe8321SBarry Smith   PetscErrorCode ierr;
11005a7c0312SHong Zhang 
1101a30f8f8cSSatish Balay   PetscFunctionBegin;
11025a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
11035a7c0312SHong Zhang   PetscFunctionReturn(0);
1104a30f8f8cSSatish Balay }
1105a30f8f8cSSatish Balay 
1106a30f8f8cSSatish Balay /*
1107a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1108a30f8f8cSSatish Balay    diagonal block
1109a30f8f8cSSatish Balay */
11104a2ae208SSatish Balay #undef __FUNCT__
11114a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1112dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1113a30f8f8cSSatish Balay {
1114a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1115dfbe8321SBarry Smith   PetscErrorCode ierr;
1116a30f8f8cSSatish Balay 
1117a30f8f8cSSatish Balay   PetscFunctionBegin;
111829bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1119a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1120a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1121a30f8f8cSSatish Balay }
1122a30f8f8cSSatish Balay 
11234a2ae208SSatish Balay #undef __FUNCT__
11244a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1125dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1126a30f8f8cSSatish Balay {
1127a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1128dfbe8321SBarry Smith   PetscErrorCode ierr;
1129a30f8f8cSSatish Balay 
1130a30f8f8cSSatish Balay   PetscFunctionBegin;
1131a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1132a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1133a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1134a30f8f8cSSatish Balay }
1135a30f8f8cSSatish Balay 
11364a2ae208SSatish Balay #undef __FUNCT__
11374a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
11381302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1139a30f8f8cSSatish Balay {
1140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
114187828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
11426849ba73SBarry Smith   PetscErrorCode ierr;
11431302d50aSBarry Smith   PetscInt       bs = mat->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
11441302d50aSBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
11451302d50aSBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstart;
1146a30f8f8cSSatish Balay 
1147a30f8f8cSSatish Balay   PetscFunctionBegin;
114829bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1149a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1150a30f8f8cSSatish Balay 
1151a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1152a30f8f8cSSatish Balay     /*
1153a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1154a30f8f8cSSatish Balay     */
1155a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1156a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
11571302d50aSBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1158a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1159a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1160a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1161a30f8f8cSSatish Balay     }
11621302d50aSBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
11631302d50aSBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1164a30f8f8cSSatish Balay   }
1165a30f8f8cSSatish Balay 
116629bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1167a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1168a30f8f8cSSatish Balay 
1169a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1170a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1171a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1172a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1173a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay   nztot = nzA + nzB;
1175a30f8f8cSSatish Balay 
1176a30f8f8cSSatish Balay   cmap  = mat->garray;
1177a30f8f8cSSatish Balay   if (v  || idx) {
1178a30f8f8cSSatish Balay     if (nztot) {
1179a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
11801302d50aSBarry Smith       PetscInt imark = -1;
1181a30f8f8cSSatish Balay       if (v) {
1182a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1183a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1184a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1185a30f8f8cSSatish Balay           else break;
1186a30f8f8cSSatish Balay         }
1187a30f8f8cSSatish Balay         imark = i;
1188a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1189a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1190a30f8f8cSSatish Balay       }
1191a30f8f8cSSatish Balay       if (idx) {
1192a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1193a30f8f8cSSatish Balay         if (imark > -1) {
1194a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1195a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1196a30f8f8cSSatish Balay           }
1197a30f8f8cSSatish Balay         } else {
1198a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1199a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1200a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1201a30f8f8cSSatish Balay             else break;
1202a30f8f8cSSatish Balay           }
1203a30f8f8cSSatish Balay           imark = i;
1204a30f8f8cSSatish Balay         }
1205a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1206a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1207a30f8f8cSSatish Balay       }
1208a30f8f8cSSatish Balay     } else {
1209a30f8f8cSSatish Balay       if (idx) *idx = 0;
1210a30f8f8cSSatish Balay       if (v)   *v   = 0;
1211a30f8f8cSSatish Balay     }
1212a30f8f8cSSatish Balay   }
1213a30f8f8cSSatish Balay   *nz = nztot;
1214a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1215a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1216a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1217a30f8f8cSSatish Balay }
1218a30f8f8cSSatish Balay 
12194a2ae208SSatish Balay #undef __FUNCT__
12204a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
12211302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1222a30f8f8cSSatish Balay {
1223a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1224a30f8f8cSSatish Balay 
1225a30f8f8cSSatish Balay   PetscFunctionBegin;
1226a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
122729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1228a30f8f8cSSatish Balay   }
1229a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
12351302d50aSBarry Smith PetscErrorCode MatGetBlockSize_MPISBAIJ(Mat mat,PetscInt *bs)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1238a30f8f8cSSatish Balay 
1239a30f8f8cSSatish Balay   PetscFunctionBegin;
1240a30f8f8cSSatish Balay   *bs = baij->bs;
1241a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1242a30f8f8cSSatish Balay }
1243a30f8f8cSSatish Balay 
12444a2ae208SSatish Balay #undef __FUNCT__
12454a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1246dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1247a30f8f8cSSatish Balay {
1248a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1249dfbe8321SBarry Smith   PetscErrorCode ierr;
1250a30f8f8cSSatish Balay 
1251a30f8f8cSSatish Balay   PetscFunctionBegin;
1252a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1253a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1254a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1255a30f8f8cSSatish Balay }
1256a30f8f8cSSatish Balay 
12574a2ae208SSatish Balay #undef __FUNCT__
12584a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1259dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1260a30f8f8cSSatish Balay {
1261a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1262a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1263dfbe8321SBarry Smith   PetscErrorCode ierr;
1264a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1265a30f8f8cSSatish Balay 
1266a30f8f8cSSatish Balay   PetscFunctionBegin;
1267f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1268a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1269a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1270a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1271a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1272a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1273a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1274a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1275a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1276a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1277a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1278a30f8f8cSSatish Balay     info->memory       = isend[3];
1279a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1280a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1281d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1282a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1283a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1284a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1285a30f8f8cSSatish Balay     info->memory       = irecv[3];
1286a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1287a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1288d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1289a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1290a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1291a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1292a30f8f8cSSatish Balay     info->memory       = irecv[3];
1293a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1294a30f8f8cSSatish Balay   } else {
1295*77431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1296a30f8f8cSSatish Balay   }
1297f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1298f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1299f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1300f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1301a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1302a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1303a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1304a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1305a30f8f8cSSatish Balay }
1306a30f8f8cSSatish Balay 
13074a2ae208SSatish Balay #undef __FUNCT__
13084a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1309dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1310a30f8f8cSSatish Balay {
1311a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1312dfbe8321SBarry Smith   PetscErrorCode ierr;
1313a30f8f8cSSatish Balay 
1314a30f8f8cSSatish Balay   PetscFunctionBegin;
1315e98b92d7SKris Buschelman   switch (op) {
1316e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1317e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1318e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1319e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1320e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1321e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1322e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1323a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1324a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1325e98b92d7SKris Buschelman     break;
1326e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1327a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1328a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1330e98b92d7SKris Buschelman     break;
1331e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1332e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1333e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1334b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1335e98b92d7SKris Buschelman     break;
1336e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1337a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1338a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1339a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1340e98b92d7SKris Buschelman     break;
1341e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1342a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1343e98b92d7SKris Buschelman     break;
1344e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
134529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1346e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1347a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1348e98b92d7SKris Buschelman     break;
13499a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
13509a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
13519a4540c5SBarry Smith   case MAT_HERMITIAN:
13529a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
135377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
135477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13559a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
13569a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
13579a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
135877e54ba9SKris Buschelman     break;
1359e98b92d7SKris Buschelman   default:
136029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1361a30f8f8cSSatish Balay   }
1362a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1363a30f8f8cSSatish Balay }
1364a30f8f8cSSatish Balay 
13654a2ae208SSatish Balay #undef __FUNCT__
13668115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1367dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1368a30f8f8cSSatish Balay {
1369dfbe8321SBarry Smith   PetscErrorCode ierr;
1370a30f8f8cSSatish Balay   PetscFunctionBegin;
1371999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13728115998fSBarry Smith   PetscFunctionReturn(0);
1373a30f8f8cSSatish Balay }
1374a30f8f8cSSatish Balay 
13754a2ae208SSatish Balay #undef __FUNCT__
13764a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1377dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1378a30f8f8cSSatish Balay {
1379a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1380a30f8f8cSSatish Balay   Mat            a = baij->A,b = baij->B;
1381dfbe8321SBarry Smith   PetscErrorCode ierr;
13821302d50aSBarry Smith   PetscInt       s1,s2,s3;
1383a30f8f8cSSatish Balay 
1384a30f8f8cSSatish Balay   PetscFunctionBegin;
1385a30f8f8cSSatish Balay   if (ll != rr) {
138629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1387a30f8f8cSSatish Balay   }
1388a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1389a30f8f8cSSatish Balay   if (rr) {
1390a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
139129bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1392a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1393a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1394a30f8f8cSSatish Balay     /*} if (ll) { */
1395a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
139629bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1397a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1398a30f8f8cSSatish Balay     /* } */
1399a30f8f8cSSatish Balay   /* scale  the diagonal block */
1400a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1401a30f8f8cSSatish Balay 
1402a30f8f8cSSatish Balay   /* if (rr) { */
1403a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1404a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1405a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1406a30f8f8cSSatish Balay   }
1407a30f8f8cSSatish Balay 
1408a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1409a30f8f8cSSatish Balay }
1410a30f8f8cSSatish Balay 
14114a2ae208SSatish Balay #undef __FUNCT__
14124a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
1413dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag)
1414a30f8f8cSSatish Balay {
1415a30f8f8cSSatish Balay   PetscFunctionBegin;
1416c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1417a30f8f8cSSatish Balay }
1418a30f8f8cSSatish Balay 
14194a2ae208SSatish Balay #undef __FUNCT__
14204a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1421dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1422a30f8f8cSSatish Balay {
1423a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1424a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
14251302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1426dfbe8321SBarry Smith   PetscErrorCode    ierr;
1427a30f8f8cSSatish Balay 
1428a30f8f8cSSatish Balay   PetscFunctionBegin;
1429a30f8f8cSSatish Balay   if (!a->rank) {
1430a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1431a30f8f8cSSatish Balay   }
14321302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1433a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1434a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1435a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1436a30f8f8cSSatish Balay }
1437a30f8f8cSSatish Balay 
14384a2ae208SSatish Balay #undef __FUNCT__
14394a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1440dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1441a30f8f8cSSatish Balay {
1442f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1443dfbe8321SBarry Smith   PetscErrorCode ierr;
1444a30f8f8cSSatish Balay 
1445a30f8f8cSSatish Balay   PetscFunctionBegin;
1446a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1447a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1448a30f8f8cSSatish Balay }
1449a30f8f8cSSatish Balay 
14506849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1451a30f8f8cSSatish Balay 
14524a2ae208SSatish Balay #undef __FUNCT__
14534a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1454dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1455a30f8f8cSSatish Balay {
1456a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1457a30f8f8cSSatish Balay   Mat            a,b,c,d;
1458a30f8f8cSSatish Balay   PetscTruth     flg;
1459dfbe8321SBarry Smith   PetscErrorCode ierr;
1460a30f8f8cSSatish Balay 
1461a30f8f8cSSatish Balay   PetscFunctionBegin;
1462a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1463a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1464a30f8f8cSSatish Balay 
1465a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1466a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1467a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1468a30f8f8cSSatish Balay   }
1469a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1470a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1471a30f8f8cSSatish Balay }
1472a30f8f8cSSatish Balay 
14734a2ae208SSatish Balay #undef __FUNCT__
14744a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1475dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1476273d9f13SBarry Smith {
1477dfbe8321SBarry Smith   PetscErrorCode ierr;
1478273d9f13SBarry Smith 
1479273d9f13SBarry Smith   PetscFunctionBegin;
1480273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1481273d9f13SBarry Smith   PetscFunctionReturn(0);
1482273d9f13SBarry Smith }
1483a5e6ed63SBarry Smith 
1484a5e6ed63SBarry Smith #undef __FUNCT__
1485a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14861302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1487a5e6ed63SBarry Smith {
14886849ba73SBarry Smith   PetscErrorCode ierr;
14891302d50aSBarry Smith   PetscInt       i;
1490a5e6ed63SBarry Smith   PetscTruth     flg;
1491a5e6ed63SBarry Smith 
14926849ba73SBarry Smith   PetscFunctionBegin;
1493a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1494a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1495a5e6ed63SBarry Smith     if (!flg) {
14961302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1497a5e6ed63SBarry Smith     }
1498a5e6ed63SBarry Smith   }
1499a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1500a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1501a5e6ed63SBarry Smith }
1502a5e6ed63SBarry Smith 
1503a5e6ed63SBarry Smith 
1504a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1505a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1506a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1507a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1508a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1509a9d4b620SHong Zhang        MatMult_MPISBAIJ,
151097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1511a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1512a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1513a30f8f8cSSatish Balay        0,
1514a30f8f8cSSatish Balay        0,
1515a30f8f8cSSatish Balay        0,
151697304618SKris Buschelman /*10*/ 0,
1517a30f8f8cSSatish Balay        0,
1518a30f8f8cSSatish Balay        0,
15192798e883SHong Zhang        MatRelax_MPISBAIJ,
1520a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
152197304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1522a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1523a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1524a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1525a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
152697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1527a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1528a30f8f8cSSatish Balay        0,
1529a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1530a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
153197304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ,
1532a30f8f8cSSatish Balay        0,
1533a30f8f8cSSatish Balay        0,
1534a30f8f8cSSatish Balay        0,
1535a30f8f8cSSatish Balay        0,
153697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1537b5df2d14SHong Zhang        0,
1538a30f8f8cSSatish Balay        0,
1539a30f8f8cSSatish Balay        0,
1540a30f8f8cSSatish Balay        0,
154197304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1542a30f8f8cSSatish Balay        0,
1543a30f8f8cSSatish Balay        0,
1544a30f8f8cSSatish Balay        0,
1545a30f8f8cSSatish Balay        0,
154697304618SKris Buschelman /*40*/ 0,
1547a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1548d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1549a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1550a30f8f8cSSatish Balay        0,
155197304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1552a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1553a30f8f8cSSatish Balay        0,
1554a30f8f8cSSatish Balay        0,
1555a30f8f8cSSatish Balay        0,
155697304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ,
1557a30f8f8cSSatish Balay        0,
1558a30f8f8cSSatish Balay        0,
1559a30f8f8cSSatish Balay        0,
1560a30f8f8cSSatish Balay        0,
156197304618SKris Buschelman /*55*/ 0,
1562a30f8f8cSSatish Balay        0,
1563a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1564a30f8f8cSSatish Balay        0,
1565a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
156697304618SKris Buschelman /*60*/ 0,
1567a30f8f8cSSatish Balay        0,
1568a30f8f8cSSatish Balay        0,
15698a124369SBarry Smith        MatGetPetscMaps_Petsc,
157024d5174aSHong Zhang        0,
157197304618SKris Buschelman /*65*/ 0,
157224d5174aSHong Zhang        0,
157324d5174aSHong Zhang        0,
157424d5174aSHong Zhang        0,
157524d5174aSHong Zhang        0,
157697304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
157724d5174aSHong Zhang        0,
157897304618SKris Buschelman        0,
157997304618SKris Buschelman        0,
158097304618SKris Buschelman        0,
158197304618SKris Buschelman /*75*/ 0,
158297304618SKris Buschelman        0,
158397304618SKris Buschelman        0,
158497304618SKris Buschelman        0,
158597304618SKris Buschelman        0,
158697304618SKris Buschelman /*80*/ 0,
158797304618SKris Buschelman        0,
158897304618SKris Buschelman        0,
158997304618SKris Buschelman        0,
1590865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1591865e5f61SKris Buschelman /*85*/ 0,
1592865e5f61SKris Buschelman        0,
1593865e5f61SKris Buschelman        0,
1594865e5f61SKris Buschelman        0,
1595865e5f61SKris Buschelman        0,
1596865e5f61SKris Buschelman /*90*/ 0,
1597865e5f61SKris Buschelman        0,
1598865e5f61SKris Buschelman        0,
1599865e5f61SKris Buschelman        0,
1600865e5f61SKris Buschelman        0,
1601865e5f61SKris Buschelman /*95*/ 0,
1602865e5f61SKris Buschelman        0,
1603865e5f61SKris Buschelman        0,
1604865e5f61SKris Buschelman        0};
1605a30f8f8cSSatish Balay 
1606a30f8f8cSSatish Balay 
1607a30f8f8cSSatish Balay EXTERN_C_BEGIN
16084a2ae208SSatish Balay #undef __FUNCT__
16094a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1610dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1611a30f8f8cSSatish Balay {
1612a30f8f8cSSatish Balay   PetscFunctionBegin;
1613a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1614a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1615a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1616a30f8f8cSSatish Balay }
1617a30f8f8cSSatish Balay EXTERN_C_END
1618a30f8f8cSSatish Balay 
1619273d9f13SBarry Smith EXTERN_C_BEGIN
16204a2ae208SSatish Balay #undef __FUNCT__
1621a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
16221302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1623a23d5eceSKris Buschelman {
1624a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1625dfbe8321SBarry Smith   PetscErrorCode ierr;
16261302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1627a23d5eceSKris Buschelman 
1628a23d5eceSKris Buschelman   PetscFunctionBegin;
1629a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1630a23d5eceSKris Buschelman 
1631a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1632a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1633a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1634*77431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1635*77431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1636a23d5eceSKris Buschelman   if (d_nnz) {
1637a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1638*77431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1639a23d5eceSKris Buschelman     }
1640a23d5eceSKris Buschelman   }
1641a23d5eceSKris Buschelman   if (o_nnz) {
1642a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1643*77431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1644a23d5eceSKris Buschelman     }
1645a23d5eceSKris Buschelman   }
1646a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1647a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1648a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1649a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1650a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1651a23d5eceSKris Buschelman 
1652a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1653a23d5eceSKris Buschelman   mbs = B->m/bs;
1654a23d5eceSKris Buschelman   Mbs = B->M/bs;
1655a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
1656*77431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1657a23d5eceSKris Buschelman   }
1658a23d5eceSKris Buschelman 
1659a23d5eceSKris Buschelman   b->bs  = bs;
1660a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1661a23d5eceSKris Buschelman   b->mbs = mbs;
1662a23d5eceSKris Buschelman   b->nbs = mbs;
1663a23d5eceSKris Buschelman   b->Mbs = Mbs;
1664a23d5eceSKris Buschelman   b->Nbs = Mbs;
1665a23d5eceSKris Buschelman 
1666a23d5eceSKris Buschelman   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1667a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1668a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1669a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1670a23d5eceSKris Buschelman   }
1671a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1672a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1673a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1674a23d5eceSKris Buschelman   b->cend      = b->rend;
1675a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1676a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1677a23d5eceSKris Buschelman   }
1678a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1679a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1680a23d5eceSKris Buschelman 
1681a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1682a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1683a23d5eceSKris Buschelman 
16849c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
16859c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1686c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
16879c097c71SKris Buschelman   PetscLogObjectParent(B,b->A);
16889c097c71SKris Buschelman 
16899c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
16904aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1691589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
16929c097c71SKris Buschelman   PetscLogObjectParent(B,b->B);
1693a23d5eceSKris Buschelman 
1694a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1695a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1696a23d5eceSKris Buschelman 
1697a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1698a23d5eceSKris Buschelman }
1699a23d5eceSKris Buschelman EXTERN_C_END
1700a23d5eceSKris Buschelman 
17010bad9183SKris Buschelman /*MC
1702fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
17030bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
17040bad9183SKris Buschelman 
17050bad9183SKris Buschelman    Options Database Keys:
17060bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17070bad9183SKris Buschelman 
17080bad9183SKris Buschelman   Level: beginner
17090bad9183SKris Buschelman 
17100bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17110bad9183SKris Buschelman M*/
17120bad9183SKris Buschelman 
1713a23d5eceSKris Buschelman EXTERN_C_BEGIN
1714a23d5eceSKris Buschelman #undef __FUNCT__
17154a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1716dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1717b5df2d14SHong Zhang {
1718b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1719dfbe8321SBarry Smith   PetscErrorCode ierr;
1720b5df2d14SHong Zhang   PetscTruth     flg;
1721b5df2d14SHong Zhang 
1722b5df2d14SHong Zhang   PetscFunctionBegin;
1723b5df2d14SHong Zhang 
1724b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1725b0a32e0cSBarry Smith   B->data = (void*)b;
1726b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1727b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1730b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1731b5df2d14SHong Zhang   B->mapping    = 0;
1732b5df2d14SHong Zhang   B->factor     = 0;
1733b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1734b5df2d14SHong Zhang 
1735b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1736b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1737b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1738b5df2d14SHong Zhang 
1739b5df2d14SHong Zhang   /* build local table of row and column ownerships */
17401302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1741273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1742273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
17431302d50aSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1744b5df2d14SHong Zhang 
1745b5df2d14SHong Zhang   /* build cache for off array entries formed */
1746b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1747b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1748b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1749b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1750b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1751b5df2d14SHong Zhang 
1752f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1753b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
175464a35ccbSBarry Smith   b->setvalueslen     = 0;
1755b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1756b5df2d14SHong Zhang #endif
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang   /* stuff used in block assembly */
1759b5df2d14SHong Zhang   b->barray       = 0;
1760b5df2d14SHong Zhang 
1761b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1762b5df2d14SHong Zhang   b->lvec         = 0;
1763b5df2d14SHong Zhang   b->Mvctx        = 0;
176440781036SHong Zhang   b->slvec0       = 0;
176540781036SHong Zhang   b->slvec0b      = 0;
176640781036SHong Zhang   b->slvec1       = 0;
176740781036SHong Zhang   b->slvec1a      = 0;
176840781036SHong Zhang   b->slvec1b      = 0;
176940781036SHong Zhang   b->sMvctx       = 0;
1770b5df2d14SHong Zhang 
1771b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1772b5df2d14SHong Zhang   b->rowindices   = 0;
1773b5df2d14SHong Zhang   b->rowvalues    = 0;
1774b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1775b5df2d14SHong Zhang 
1776b5df2d14SHong Zhang   /* hash table stuff */
1777b5df2d14SHong Zhang   b->ht           = 0;
1778b5df2d14SHong Zhang   b->hd           = 0;
1779b5df2d14SHong Zhang   b->ht_size      = 0;
1780b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1781b5df2d14SHong Zhang   b->ht_fact      = 0;
1782b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1783b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1784b5df2d14SHong Zhang 
1785e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1786b5df2d14SHong Zhang   if (flg) {
1787f6275e2eSBarry Smith     PetscReal fact = 1.39;
1788b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1789e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1790b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1791b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1792b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1793b5df2d14SHong Zhang   }
1794b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1795b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1796b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1797b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1798b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1799b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1800b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1801b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1802b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1803a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1804a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1805a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
180623ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
180723ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
180823ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
180923ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1810b5df2d14SHong Zhang   PetscFunctionReturn(0);
1811b5df2d14SHong Zhang }
1812273d9f13SBarry Smith EXTERN_C_END
1813b5df2d14SHong Zhang 
1814209238afSKris Buschelman /*MC
1815002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1816209238afSKris Buschelman 
1817209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1818209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1819209238afSKris Buschelman 
1820209238afSKris Buschelman    Options Database Keys:
1821209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1822209238afSKris Buschelman 
1823209238afSKris Buschelman   Level: beginner
1824209238afSKris Buschelman 
1825209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1826209238afSKris Buschelman M*/
1827209238afSKris Buschelman 
1828209238afSKris Buschelman EXTERN_C_BEGIN
1829209238afSKris Buschelman #undef __FUNCT__
1830209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1831dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A)
1832dfbe8321SBarry Smith {
18336849ba73SBarry Smith   PetscErrorCode ierr;
18341302d50aSBarry Smith   PetscMPIInt    size;
1835209238afSKris Buschelman 
1836209238afSKris Buschelman   PetscFunctionBegin;
1837209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1838209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1839209238afSKris Buschelman   if (size == 1) {
1840209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1841209238afSKris Buschelman   } else {
1842209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1843209238afSKris Buschelman   }
1844209238afSKris Buschelman   PetscFunctionReturn(0);
1845209238afSKris Buschelman }
1846209238afSKris Buschelman EXTERN_C_END
1847209238afSKris Buschelman 
18484a2ae208SSatish Balay #undef __FUNCT__
18494a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1850b5df2d14SHong Zhang /*@C
1851b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1852b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1853b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1854b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1855b5df2d14SHong Zhang 
1856b5df2d14SHong Zhang    Collective on Mat
1857b5df2d14SHong Zhang 
1858b5df2d14SHong Zhang    Input Parameters:
1859b5df2d14SHong Zhang +  A - the matrix
1860b5df2d14SHong Zhang .  bs   - size of blockk
1861b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1862b5df2d14SHong Zhang            submatrix  (same for all local rows)
1863b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18646d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18656d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18666d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1867b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1868b5df2d14SHong Zhang            submatrix (same for all local rows).
1869b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1870b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1871b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang 
1874b5df2d14SHong Zhang    Options Database Keys:
1875b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1876b5df2d14SHong Zhang                      block calculations (much slower)
1877b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1878b5df2d14SHong Zhang 
1879b5df2d14SHong Zhang    Notes:
1880b5df2d14SHong Zhang 
1881b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1882b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1883b5df2d14SHong Zhang 
1884b5df2d14SHong Zhang    Storage Information:
1885b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1886b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1887b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1888b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1889b5df2d14SHong Zhang 
1890b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1891b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1892b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1893b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1894b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1895b5df2d14SHong Zhang 
1896b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1897b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1898b5df2d14SHong Zhang 
1899b5df2d14SHong Zhang .vb
1900b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1901b5df2d14SHong Zhang           -------------------
1902b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1903b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1904b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1905b5df2d14SHong Zhang           -------------------
1906b5df2d14SHong Zhang .ve
1907b5df2d14SHong Zhang 
1908b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1909b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19106d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19116d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1912b5df2d14SHong Zhang 
19136d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19146d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1915b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1916b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1917b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1918b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1919b5df2d14SHong Zhang    matrices.
1920b5df2d14SHong Zhang 
1921b5df2d14SHong Zhang    Level: intermediate
1922b5df2d14SHong Zhang 
1923b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1924b5df2d14SHong Zhang 
1925b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1926b5df2d14SHong Zhang @*/
19271302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1928b5df2d14SHong Zhang {
19291302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1930b5df2d14SHong Zhang 
1931b5df2d14SHong Zhang   PetscFunctionBegin;
1932a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1933a23d5eceSKris Buschelman   if (f) {
1934a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1935b5df2d14SHong Zhang   }
1936b5df2d14SHong Zhang   PetscFunctionReturn(0);
1937b5df2d14SHong Zhang }
1938b5df2d14SHong Zhang 
19394a2ae208SSatish Balay #undef __FUNCT__
19404a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1941a30f8f8cSSatish Balay /*@C
1942a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1943a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1944a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1945a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1946a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1947a30f8f8cSSatish Balay 
1948a30f8f8cSSatish Balay    Collective on MPI_Comm
1949a30f8f8cSSatish Balay 
1950a30f8f8cSSatish Balay    Input Parameters:
1951a30f8f8cSSatish Balay +  comm - MPI communicator
1952a30f8f8cSSatish Balay .  bs   - size of blockk
1953a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1954a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1955a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1956a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1957a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1958a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1959a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1960a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1961a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1962a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1963a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19646d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19656d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19666d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1967a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1968a30f8f8cSSatish Balay            submatrix (same for all local rows).
1969a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1970a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1971a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1972a30f8f8cSSatish Balay 
1973a30f8f8cSSatish Balay    Output Parameter:
1974a30f8f8cSSatish Balay .  A - the matrix
1975a30f8f8cSSatish Balay 
1976a30f8f8cSSatish Balay    Options Database Keys:
1977a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1978a30f8f8cSSatish Balay                      block calculations (much slower)
1979a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1980a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1981a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1982a30f8f8cSSatish Balay 
1983a30f8f8cSSatish Balay    Notes:
1984a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1985a30f8f8cSSatish Balay    (possibly both).
1986a30f8f8cSSatish Balay 
1987a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1988a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1989a30f8f8cSSatish Balay 
1990a30f8f8cSSatish Balay    Storage Information:
1991a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1992a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1993a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1994a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1995a30f8f8cSSatish Balay 
1996a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1997a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1998a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1999a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2000a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2003a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2004a30f8f8cSSatish Balay 
2005a30f8f8cSSatish Balay .vb
2006a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2007a30f8f8cSSatish Balay           -------------------
2008a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2009a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2010a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2011a30f8f8cSSatish Balay           -------------------
2012a30f8f8cSSatish Balay .ve
2013a30f8f8cSSatish Balay 
2014a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2015a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20166d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20176d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2018a30f8f8cSSatish Balay 
20196d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20206d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2021a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2022a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2023a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2024a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2025a30f8f8cSSatish Balay    matrices.
2026a30f8f8cSSatish Balay 
2027a30f8f8cSSatish Balay    Level: intermediate
2028a30f8f8cSSatish Balay 
2029a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2030a30f8f8cSSatish Balay 
2031a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2032a30f8f8cSSatish Balay @*/
2033a30f8f8cSSatish Balay 
20341302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2035a30f8f8cSSatish Balay {
20366849ba73SBarry Smith   PetscErrorCode ierr;
20371302d50aSBarry Smith   PetscMPIInt    size;
2038a30f8f8cSSatish Balay 
2039a30f8f8cSSatish Balay   PetscFunctionBegin;
2040b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2041273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2042273d9f13SBarry Smith   if (size > 1) {
2043b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2044b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2045273d9f13SBarry Smith   } else {
2046273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2047273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2048273d9f13SBarry Smith   }
2049a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2050a30f8f8cSSatish Balay }
2051a30f8f8cSSatish Balay 
2052a30f8f8cSSatish Balay 
20534a2ae208SSatish Balay #undef __FUNCT__
20544a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2056a30f8f8cSSatish Balay {
2057a30f8f8cSSatish Balay   Mat            mat;
2058a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2059dfbe8321SBarry Smith   PetscErrorCode ierr;
20601302d50aSBarry Smith   PetscInt       len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs;
2061387bc808SHong Zhang   PetscScalar    *array;
2062a30f8f8cSSatish Balay 
2063a30f8f8cSSatish Balay   PetscFunctionBegin;
2064a30f8f8cSSatish Balay   *newmat       = 0;
2065b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2066be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20671d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2068e1b6402fSHong Zhang 
206982327fa8SHong Zhang   mat->factor       = matin->factor;
2070273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
207182327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20727fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20737fff6886SHong Zhang 
2074b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2075a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
2076a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2077a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2078a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2079a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2080a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2081a30f8f8cSSatish Balay 
2082a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2083a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2084a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2085a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2086a30f8f8cSSatish Balay   a->size         = oldmat->size;
2087a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2088a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2089a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2090a30f8f8cSSatish Balay   a->rowindices   = 0;
2091a30f8f8cSSatish Balay   a->rowvalues    = 0;
2092a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2093a30f8f8cSSatish Balay   a->barray       = 0;
2094a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2095a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2096a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2097a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2098a30f8f8cSSatish Balay 
2099a30f8f8cSSatish Balay   /* hash table stuff */
2100a30f8f8cSSatish Balay   a->ht           = 0;
2101a30f8f8cSSatish Balay   a->hd           = 0;
2102a30f8f8cSSatish Balay   a->ht_size      = 0;
2103a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2104a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2105a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2106a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2107a30f8f8cSSatish Balay 
21081302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2109a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2110a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2111a30f8f8cSSatish Balay   if (oldmat->colmap) {
2112a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2113a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2114a30f8f8cSSatish Balay #else
21151302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
21161302d50aSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));
21171302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2118a30f8f8cSSatish Balay #endif
2119a30f8f8cSSatish Balay   } else a->colmap = 0;
2120387bc808SHong Zhang 
2121a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21221302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
21231302d50aSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(PetscInt));
21241302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2125a30f8f8cSSatish Balay   } else a->garray = 0;
2126a30f8f8cSSatish Balay 
2127a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2128b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2129a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2130b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
213182327fa8SHong Zhang 
213282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
2133387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
213482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
2135387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2136387bc808SHong Zhang 
2137387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21381ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2139387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2140387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21411ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21421ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2143387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21441ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
2145387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0);
2146387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1);
2147387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec0b);
2148387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1a);
2149387bc808SHong Zhang   PetscLogObjectParent(mat,a->slvec1b);
2150387bc808SHong Zhang 
2151387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2152387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2153387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
2154387bc808SHong Zhang   PetscLogObjectParent(mat,a->sMvctx);
215582327fa8SHong Zhang 
2156a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2157b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2158a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2159b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2160b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay   *newmat = mat;
2162a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2163a30f8f8cSSatish Balay }
2164a30f8f8cSSatish Balay 
2165a30f8f8cSSatish Balay #include "petscsys.h"
2166a30f8f8cSSatish Balay 
21674a2ae208SSatish Balay #undef __FUNCT__
21684a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2169dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
2170a30f8f8cSSatish Balay {
2171a30f8f8cSSatish Balay   Mat            A;
21726849ba73SBarry Smith   PetscErrorCode ierr;
21731302d50aSBarry Smith   PetscInt       i,nz,j,rstart,rend,fd;
217487828ca2SBarry Smith   PetscScalar    *vals,*buf;
2175a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2176a30f8f8cSSatish Balay   MPI_Status     status;
21771302d50aSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
21781302d50aSBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
21791302d50aSBarry Smith   PetscInt       *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
21801302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21811302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21821302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
2183a30f8f8cSSatish Balay 
2184a30f8f8cSSatish Balay   PetscFunctionBegin;
2185b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2186a30f8f8cSSatish Balay 
2187a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   if (!rank) {
2190b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2191a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2192552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2193a30f8f8cSSatish Balay     if (header[3] < 0) {
219429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2195a30f8f8cSSatish Balay     }
2196a30f8f8cSSatish Balay   }
2197a30f8f8cSSatish Balay 
2198a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2199a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2200a30f8f8cSSatish Balay 
220129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2202a30f8f8cSSatish Balay 
2203a30f8f8cSSatish Balay   /*
2204a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2205a30f8f8cSSatish Balay      divisible by the blocksize
2206a30f8f8cSSatish Balay   */
2207a30f8f8cSSatish Balay   Mbs        = M/bs;
2208a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2209a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2210a30f8f8cSSatish Balay   else                  Mbs++;
2211a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2212b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2213a30f8f8cSSatish Balay   }
2214a30f8f8cSSatish Balay 
2215a30f8f8cSSatish Balay   /* determine ownership of all rows */
2216a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2217a30f8f8cSSatish Balay   m          = mbs*bs;
22181302d50aSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
2219a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2220a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay   rowners[0] = 0;
2222a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2223a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2224a30f8f8cSSatish Balay   rstart = rowners[rank];
2225a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2226a30f8f8cSSatish Balay 
2227a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22281302d50aSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay   if (!rank) {
22301302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
22331302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&sndcounts);CHKERRQ(ierr);
2234a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2235a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2237a30f8f8cSSatish Balay   } else {
2238a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2239a30f8f8cSSatish Balay   }
2240a30f8f8cSSatish Balay 
22410222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2242a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22431302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22441302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2245a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2246a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2247a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2248a30f8f8cSSatish Balay       }
2249a30f8f8cSSatish Balay     }
2250a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay 
2252a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2253a30f8f8cSSatish Balay     maxnz = 0;
2254a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2255a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2256a30f8f8cSSatish Balay     }
22571302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay 
2259a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2260a30f8f8cSSatish Balay     nz     = procsnz[0];
22611302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2262a30f8f8cSSatish Balay     mycols = ibuf;
2263a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2264a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2266a30f8f8cSSatish Balay 
2267a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2268a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2269a30f8f8cSSatish Balay       nz   = procsnz[i];
2270a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2271a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay     }
2273a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2274a30f8f8cSSatish Balay     if (size != 1) {
2275a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2276a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2277a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2278a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay     }
2280a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22810222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2282a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2283a30f8f8cSSatish Balay     nz = 0;
2284a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2285a30f8f8cSSatish Balay       nz += locrowlens[i];
2286a30f8f8cSSatish Balay     }
22871302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2288a30f8f8cSSatish Balay     mycols = ibuf;
2289a30f8f8cSSatish Balay     /* receive message of column indices*/
2290a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2291a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
229229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2293a30f8f8cSSatish Balay   }
2294a30f8f8cSSatish Balay 
2295a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22961302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2297a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22981302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22991302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2300a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2301a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2302a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2303a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2304a30f8f8cSSatish Balay     dcount  = 0;
2305a30f8f8cSSatish Balay     odcount = 0;
2306a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2307a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2308a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23090222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2310a30f8f8cSSatish Balay         if (!mask[tmp]) {
2311a30f8f8cSSatish Balay           mask[tmp] = 1;
23120222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23130222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2314a30f8f8cSSatish Balay         }
2315a30f8f8cSSatish Balay       }
2316a30f8f8cSSatish Balay       rowcount++;
2317a30f8f8cSSatish Balay     }
2318a30f8f8cSSatish Balay 
23190222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23200222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2321a30f8f8cSSatish Balay 
2322a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2323a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2324a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2325a30f8f8cSSatish Balay   }
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay   /* create our matrix */
232822191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
232922191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
233022191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2331273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay 
2333a30f8f8cSSatish Balay   if (!rank) {
233487828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2336a30f8f8cSSatish Balay     nz = procsnz[0];
2337a30f8f8cSSatish Balay     vals = buf;
2338a30f8f8cSSatish Balay     mycols = ibuf;
2339a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2340a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2342a30f8f8cSSatish Balay 
2343a30f8f8cSSatish Balay     /* insert into matrix */
2344a30f8f8cSSatish Balay     jj      = rstart*bs;
2345a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23467e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2347a30f8f8cSSatish Balay       mycols += locrowlens[i];
2348a30f8f8cSSatish Balay       vals   += locrowlens[i];
2349a30f8f8cSSatish Balay       jj++;
2350a30f8f8cSSatish Balay     }
23517e06b45fSHong Zhang 
2352a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2353a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2354a30f8f8cSSatish Balay       nz   = procsnz[i];
2355a30f8f8cSSatish Balay       vals = buf;
2356a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2357a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay     }
2359a30f8f8cSSatish Balay     /* the last proc */
2360a30f8f8cSSatish Balay     if (size != 1){
2361a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2362a30f8f8cSSatish Balay       vals = buf;
2363a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2364a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2365a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay     }
2367a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23687e06b45fSHong Zhang 
2369a30f8f8cSSatish Balay   } else {
2370a30f8f8cSSatish Balay     /* receive numeric values */
237187828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2372a30f8f8cSSatish Balay 
2373a30f8f8cSSatish Balay     /* receive message of values*/
2374a30f8f8cSSatish Balay     vals   = buf;
2375a30f8f8cSSatish Balay     mycols = ibuf;
2376a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2377a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2379a30f8f8cSSatish Balay 
2380a30f8f8cSSatish Balay     /* insert into matrix */
2381a30f8f8cSSatish Balay     jj      = rstart*bs;
2382a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2383a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2384a30f8f8cSSatish Balay       mycols += locrowlens[i];
2385a30f8f8cSSatish Balay       vals   += locrowlens[i];
2386a30f8f8cSSatish Balay       jj++;
2387a30f8f8cSSatish Balay     }
2388a30f8f8cSSatish Balay   }
23897e06b45fSHong Zhang 
2390a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2391a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2392a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2393a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2394a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2395a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2396a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2397a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239822191285SKris Buschelman   *newmat = A;
2399a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2400a30f8f8cSSatish Balay }
2401a30f8f8cSSatish Balay 
24024a2ae208SSatish Balay #undef __FUNCT__
24034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2404a30f8f8cSSatish Balay /*@
2405a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay    Input Parameters:
2408a30f8f8cSSatish Balay .  mat  - the matrix
2409a30f8f8cSSatish Balay .  fact - factor
2410a30f8f8cSSatish Balay 
2411a30f8f8cSSatish Balay    Collective on Mat
2412a30f8f8cSSatish Balay 
2413a30f8f8cSSatish Balay    Level: advanced
2414a30f8f8cSSatish Balay 
2415a30f8f8cSSatish Balay   Notes:
2416a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2417a30f8f8cSSatish Balay 
2418a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2419a30f8f8cSSatish Balay 
2420a30f8f8cSSatish Balay .seealso: MatSetOption()
2421a30f8f8cSSatish Balay @*/
2422dfbe8321SBarry Smith PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2423a30f8f8cSSatish Balay {
2424a30f8f8cSSatish Balay   PetscFunctionBegin;
24251302d50aSBarry Smith   SETERRQ(PETSC_ERR_SUP,"Function not yet written for SBAIJ format");
242696e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2427a30f8f8cSSatish Balay }
242824d5174aSHong Zhang 
24294a2ae208SSatish Balay #undef __FUNCT__
24304a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2431dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
243224d5174aSHong Zhang {
243324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2434f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2435ca54ac64SHong Zhang   PetscReal      atmp;
243687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2437dfbe8321SBarry Smith   PetscErrorCode ierr;
24381302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24391302d50aSBarry Smith   PetscMPIInt    rank,size;
24401302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
244187828ca2SBarry Smith   PetscScalar    *va;
24428a1c53f2SBarry Smith   MatScalar      *ba;
2443f4c0e9e4SHong Zhang   MPI_Status     stat;
244424d5174aSHong Zhang 
244524d5174aSHong Zhang   PetscFunctionBegin;
2446d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24471ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2448f4c0e9e4SHong Zhang 
244956faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
245056faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2451f4c0e9e4SHong Zhang 
2452f4c0e9e4SHong Zhang   bs   = a->bs;
2453f4c0e9e4SHong Zhang   mbs  = a->mbs;
2454f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2455f4c0e9e4SHong Zhang   ba   = b->a;
2456f4c0e9e4SHong Zhang   bi   = b->i;
2457f4c0e9e4SHong Zhang   bj   = b->j;
2458f4c0e9e4SHong Zhang 
2459f4c0e9e4SHong Zhang   /* find ownerships */
2460f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2461f4c0e9e4SHong Zhang 
2462f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
246382502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2464ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2465f4c0e9e4SHong Zhang 
2466f4c0e9e4SHong Zhang   /* row_max for B */
2467b8475685SHong Zhang   if (rank != size-1){
2468f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2469f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2470f4c0e9e4SHong Zhang       brow  = bs*i;
2471f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2472f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2473f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2474ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
247504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2476f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2477f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2478ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2479ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2480f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2481f4c0e9e4SHong Zhang           }
2482f4c0e9e4SHong Zhang         }
2483f4c0e9e4SHong Zhang         bj++;
2484f4c0e9e4SHong Zhang       }
2485f4c0e9e4SHong Zhang     }
2486f4c0e9e4SHong Zhang 
2487f4c0e9e4SHong Zhang     /* send values to its owners */
2488f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2489f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2490ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
249156faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2492ca54ac64SHong Zhang     }
2493f4c0e9e4SHong Zhang   }
2494f4c0e9e4SHong Zhang 
2495f4c0e9e4SHong Zhang   /* receive values */
2496ca54ac64SHong Zhang   if (rank){
2497f4c0e9e4SHong Zhang     rvalues = work;
2498ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2499f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
250056faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2501f4c0e9e4SHong Zhang       /* process values */
2502f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2503ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2504f4c0e9e4SHong Zhang       }
2505f4c0e9e4SHong Zhang     }
2506ca54ac64SHong Zhang   }
2507f4c0e9e4SHong Zhang 
25081ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2509ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
251024d5174aSHong Zhang   PetscFunctionReturn(0);
251124d5174aSHong Zhang }
25122798e883SHong Zhang 
25132798e883SHong Zhang #undef __FUNCT__
25142798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
25151302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25162798e883SHong Zhang {
25172798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2518dfbe8321SBarry Smith   PetscErrorCode ierr;
25191302d50aSBarry Smith   PetscInt       mbs=mat->mbs,bs=mat->bs;
2520ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2521ffe4fb16SHong Zhang   Vec            bb1;
2522ffe4fb16SHong Zhang 
2523ffe4fb16SHong Zhang   PetscFunctionBegin;
2524*77431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2525ffe4fb16SHong Zhang   if (bs > 1)
2526ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2527ffe4fb16SHong Zhang 
2528ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2529ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2530ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2531ffe4fb16SHong Zhang       its--;
2532ffe4fb16SHong Zhang     }
2533ffe4fb16SHong Zhang 
2534ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang     while (its--){
2536ffe4fb16SHong Zhang 
2537ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2538ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2539ffe4fb16SHong Zhang 
2540ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25411ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25421ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2543ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25441ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2545ffe4fb16SHong Zhang 
2546ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2547ffe4fb16SHong Zhang 
2548ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25491ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25501ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2551ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25521ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2553ffe4fb16SHong Zhang 
2554ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2555ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2556ffe4fb16SHong Zhang 
2557ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25581ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25591ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2560ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2561ffe4fb16SHong Zhang 
2562ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2563ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2564ffe4fb16SHong Zhang 
2565ffe4fb16SHong Zhang       /* local diagonal sweep */
2566ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2567ffe4fb16SHong Zhang     }
2568ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2569ffe4fb16SHong Zhang   } else {
2570ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2571ffe4fb16SHong Zhang   }
2572ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2573ffe4fb16SHong Zhang }
2574ffe4fb16SHong Zhang 
2575ffe4fb16SHong Zhang #undef __FUNCT__
2576ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25771302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2578ffe4fb16SHong Zhang {
2579ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2580dfbe8321SBarry Smith   PetscErrorCode ierr;
2581d05c616dSSatish Balay   PetscScalar    mone=-1.0;
25822798e883SHong Zhang   Vec            lvec1,bb1;
25832798e883SHong Zhang 
25842798e883SHong Zhang   PetscFunctionBegin;
2585*77431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
25862798e883SHong Zhang   if (mat->bs > 1)
25872798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25882798e883SHong Zhang 
2589c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25902798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2591bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25922798e883SHong Zhang       its--;
25932798e883SHong Zhang     }
25942798e883SHong Zhang 
25952798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25962798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25972798e883SHong Zhang     while (its--){
25982798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25992798e883SHong Zhang 
26002798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26012798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
26022798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
26032798e883SHong Zhang 
26042798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
26052798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
26062798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26072798e883SHong Zhang 
26082798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
26092798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
26102798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26112798e883SHong Zhang 
26122798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
26132798e883SHong Zhang 
2614c14dc6b6SHong Zhang       /* diagonal sweep */
2615bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26162798e883SHong Zhang     }
26172798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26182798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2619c14dc6b6SHong Zhang   } else {
2620c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2621c14dc6b6SHong Zhang   }
26222798e883SHong Zhang   PetscFunctionReturn(0);
26232798e883SHong Zhang }
26242798e883SHong Zhang 
2625