xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 77433607a89e53856bb5781060753af114ae555b)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
626cec326SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
181d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
191d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237e56f5c9eSBarry Smith     A->nonzerostate++; \
238a30f8f8cSSatish Balay   a_noinsert:; \
239a30f8f8cSSatish Balay     ailen[brow] = nrow; \
240a8f51744SPierre Jolivet   } while (0)
241e5e170daSBarry Smith 
242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
243a8f51744SPierre Jolivet   do { \
244a30f8f8cSSatish Balay     brow = row / bs; \
2459371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2469371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2479371c9d4SSatish Balay     rmax = bimax[brow]; \
2489371c9d4SSatish Balay     nrow = bilen[brow]; \
249a30f8f8cSSatish Balay     bcol = col / bs; \
2509371c9d4SSatish Balay     ridx = row % bs; \
2519371c9d4SSatish Balay     cidx = col % bs; \
2529371c9d4SSatish Balay     low  = 0; \
2539371c9d4SSatish Balay     high = nrow; \
254a30f8f8cSSatish Balay     while (high - low > 3) { \
255a30f8f8cSSatish Balay       t = (low + high) / 2; \
256a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
257a30f8f8cSSatish Balay       else low = t; \
258a30f8f8cSSatish Balay     } \
259a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
260a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
261a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
262a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
263a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
264a30f8f8cSSatish Balay         else *bap = value; \
265a30f8f8cSSatish Balay         goto b_noinsert; \
266a30f8f8cSSatish Balay       } \
267a30f8f8cSSatish Balay     } \
268a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2695f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
270fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
271a30f8f8cSSatish Balay     N = nrow++ - 1; \
272a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2759566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
276a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
277a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
278e56f5c9eSBarry Smith     B->nonzerostate++; \
279a30f8f8cSSatish Balay   b_noinsert:; \
280a30f8f8cSSatish Balay     bilen[brow] = nrow; \
281a8f51744SPierre Jolivet   } while (0)
282a30f8f8cSSatish Balay 
283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
284da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
285a30f8f8cSSatish Balay */
286d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
287d71ae5a4SJacob Faibussowitsch {
288a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
289a30f8f8cSSatish Balay   MatScalar     value;
290ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2911302d50aSBarry Smith   PetscInt      i, j, row, col;
292d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
293d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
294d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
295a30f8f8cSSatish Balay 
296a30f8f8cSSatish Balay   /* Some Variables required in the macro */
297a30f8f8cSSatish Balay   Mat           A     = baij->A;
298a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)(A)->data;
2991302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
300a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   Mat          B     = baij->B;
303a30f8f8cSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
3041302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
305a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
306a30f8f8cSSatish Balay 
3071302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3081302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
309a30f8f8cSSatish Balay   MatScalar *ap, *bap;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   /* for stash */
3120298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3130298fd71SBarry Smith   MatScalar *v_loc = NULL;
314a30f8f8cSSatish Balay 
315a30f8f8cSSatish Balay   PetscFunctionBegin;
316a30f8f8cSSatish Balay   if (!baij->donotstash) {
31759ffdab8SBarry Smith     if (n > baij->n_loc) {
3189566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3219566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32226fbe8dcSKarl Rupp 
32359ffdab8SBarry Smith       baij->n_loc = n;
32459ffdab8SBarry Smith     }
32559ffdab8SBarry Smith     in_loc = baij->in_loc;
32659ffdab8SBarry Smith     v_loc  = baij->v_loc;
327a30f8f8cSSatish Balay   }
328a30f8f8cSSatish Balay 
329a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
330a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3315f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
332a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
333a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
334a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33501b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
33601b2bd88SHong Zhang           if (a->ignore_ltriangular) {
33701b2bd88SHong Zhang             continue; /* ignore lower triangular blocks */
33826fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33901b2bd88SHong Zhang         }
340a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
341a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3429371c9d4SSatish Balay           brow = row / bs;
3439371c9d4SSatish Balay           bcol = col / bs;
344a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
345db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
346db4deed7SKarl Rupp           else value = v[i + j * m];
347d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3489566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
349f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
350f7d195e4SLawrence Mitchell           continue;
351f7d195e4SLawrence Mitchell         } else {
352f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
353f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
354a30f8f8cSSatish Balay           if (mat->was_assembled) {
35548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
357eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35871730473SSatish Balay             col = col - 1;
359a30f8f8cSSatish Balay #else
36071730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
361a30f8f8cSSatish Balay #endif
362a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) {
3639566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
364a30f8f8cSSatish Balay               col = in[j];
365a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
366a30f8f8cSSatish Balay               B     = baij->B;
367a30f8f8cSSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
3689371c9d4SSatish Balay               bimax = b->imax;
3699371c9d4SSatish Balay               bi    = b->i;
3709371c9d4SSatish Balay               bilen = b->ilen;
3719371c9d4SSatish Balay               bj    = b->j;
372a30f8f8cSSatish Balay               ba    = b->a;
37371730473SSatish Balay             } else col += in[j] % bs;
374a30f8f8cSSatish Balay           } else col = in[j];
375db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
376db4deed7SKarl Rupp           else value = v[i + j * m];
377d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3789566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
379a30f8f8cSSatish Balay         }
380a30f8f8cSSatish Balay       }
381a30f8f8cSSatish Balay     } else { /* off processor entry */
3825f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
383a30f8f8cSSatish Balay       if (!baij->donotstash) {
3845080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
385a30f8f8cSSatish Balay         n_loc          = 0;
386a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
387f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
388a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
389a30f8f8cSSatish Balay           if (roworiented) {
390a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
391a30f8f8cSSatish Balay           } else {
392a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
393a30f8f8cSSatish Balay           }
394a30f8f8cSSatish Balay           n_loc++;
395a30f8f8cSSatish Balay         }
3969566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
397a30f8f8cSSatish Balay       }
398a30f8f8cSSatish Balay     }
399a30f8f8cSSatish Balay   }
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
404d71ae5a4SJacob Faibussowitsch {
40536bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40636bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40736bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40836bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40936bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
41036bd2089SBarry Smith   const PetscScalar *value       = v;
41136bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
41236bd2089SBarry Smith 
41336bd2089SBarry Smith   PetscFunctionBegin;
41436bd2089SBarry Smith   if (col < row) {
4153ba16761SJacob Faibussowitsch     if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41636bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
41736bd2089SBarry Smith   }
41836bd2089SBarry Smith   rp    = aj + ai[row];
41936bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
42036bd2089SBarry Smith   rmax  = imax[row];
42136bd2089SBarry Smith   nrow  = ailen[row];
42236bd2089SBarry Smith   value = v;
42336bd2089SBarry Smith   low   = 0;
42436bd2089SBarry Smith   high  = nrow;
42536bd2089SBarry Smith 
42636bd2089SBarry Smith   while (high - low > 7) {
42736bd2089SBarry Smith     t = (low + high) / 2;
42836bd2089SBarry Smith     if (rp[t] > col) high = t;
42936bd2089SBarry Smith     else low = t;
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   for (i = low; i < high; i++) {
43236bd2089SBarry Smith     if (rp[i] > col) break;
43336bd2089SBarry Smith     if (rp[i] == col) {
43436bd2089SBarry Smith       bap = ap + bs2 * i;
43536bd2089SBarry Smith       if (roworiented) {
43636bd2089SBarry Smith         if (is == ADD_VALUES) {
43736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
438ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43936bd2089SBarry Smith           }
44036bd2089SBarry Smith         } else {
44136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
442ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44336bd2089SBarry Smith           }
44436bd2089SBarry Smith         }
44536bd2089SBarry Smith       } else {
44636bd2089SBarry Smith         if (is == ADD_VALUES) {
44736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
448ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44936bd2089SBarry Smith           }
45036bd2089SBarry Smith         } else {
45136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
452ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45336bd2089SBarry Smith           }
45436bd2089SBarry Smith         }
45536bd2089SBarry Smith       }
45636bd2089SBarry Smith       goto noinsert2;
45736bd2089SBarry Smith     }
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4605f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
46136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4629371c9d4SSatish Balay   N = nrow++ - 1;
4639371c9d4SSatish Balay   high++;
46436bd2089SBarry Smith   /* shift up all the later entries in this row */
4659566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4669566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46736bd2089SBarry Smith   rp[i] = col;
46836bd2089SBarry Smith   bap   = ap + bs2 * i;
46936bd2089SBarry Smith   if (roworiented) {
47036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
471ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
47236bd2089SBarry Smith     }
47336bd2089SBarry Smith   } else {
47436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
475ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47636bd2089SBarry Smith     }
47736bd2089SBarry Smith   }
47836bd2089SBarry Smith noinsert2:;
47936bd2089SBarry Smith   ailen[row] = nrow;
4803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48136bd2089SBarry Smith }
48236bd2089SBarry Smith 
48336bd2089SBarry Smith /*
48436bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48536bd2089SBarry Smith */
486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
487d71ae5a4SJacob Faibussowitsch {
48836bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48936bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
49036bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
49136bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
49236bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49336bd2089SBarry Smith   const PetscScalar *value       = v;
49436bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49536bd2089SBarry Smith 
49636bd2089SBarry Smith   PetscFunctionBegin;
49736bd2089SBarry Smith   rp    = aj + ai[row];
49836bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49936bd2089SBarry Smith   rmax  = imax[row];
50036bd2089SBarry Smith   nrow  = ailen[row];
50136bd2089SBarry Smith   low   = 0;
50236bd2089SBarry Smith   high  = nrow;
50336bd2089SBarry Smith   value = v;
50436bd2089SBarry Smith   while (high - low > 7) {
50536bd2089SBarry Smith     t = (low + high) / 2;
50636bd2089SBarry Smith     if (rp[t] > col) high = t;
50736bd2089SBarry Smith     else low = t;
50836bd2089SBarry Smith   }
50936bd2089SBarry Smith   for (i = low; i < high; i++) {
51036bd2089SBarry Smith     if (rp[i] > col) break;
51136bd2089SBarry Smith     if (rp[i] == col) {
51236bd2089SBarry Smith       bap = ap + bs2 * i;
51336bd2089SBarry Smith       if (roworiented) {
51436bd2089SBarry Smith         if (is == ADD_VALUES) {
51536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
516ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51736bd2089SBarry Smith           }
51836bd2089SBarry Smith         } else {
51936bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
520ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
52136bd2089SBarry Smith           }
52236bd2089SBarry Smith         }
52336bd2089SBarry Smith       } else {
52436bd2089SBarry Smith         if (is == ADD_VALUES) {
52536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
526ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52736bd2089SBarry Smith             bap += bs;
52836bd2089SBarry Smith           }
52936bd2089SBarry Smith         } else {
53036bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
531ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
53236bd2089SBarry Smith             bap += bs;
53336bd2089SBarry Smith           }
53436bd2089SBarry Smith         }
53536bd2089SBarry Smith       }
53636bd2089SBarry Smith       goto noinsert2;
53736bd2089SBarry Smith     }
53836bd2089SBarry Smith   }
53936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5405f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
54136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5429371c9d4SSatish Balay   N = nrow++ - 1;
5439371c9d4SSatish Balay   high++;
54436bd2089SBarry Smith   /* shift up all the later entries in this row */
5459566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5469566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54736bd2089SBarry Smith   rp[i] = col;
54836bd2089SBarry Smith   bap   = ap + bs2 * i;
54936bd2089SBarry Smith   if (roworiented) {
55036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
551ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
55236bd2089SBarry Smith     }
55336bd2089SBarry Smith   } else {
55436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
555ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55636bd2089SBarry Smith     }
55736bd2089SBarry Smith   }
55836bd2089SBarry Smith noinsert2:;
55936bd2089SBarry Smith   ailen[row] = nrow;
5603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56136bd2089SBarry Smith }
56236bd2089SBarry Smith 
56336bd2089SBarry Smith /*
56436bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56536bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56636bd2089SBarry Smith */
567d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
568d71ae5a4SJacob Faibussowitsch {
5690880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
570f15d580aSBarry Smith   const MatScalar *value;
571f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
572ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
573899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
574476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
575476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5760880e062SHong Zhang 
577a30f8f8cSSatish Balay   PetscFunctionBegin;
5780880e062SHong Zhang   if (!barray) {
5799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5800880e062SHong Zhang     baij->barray = barray;
5810880e062SHong Zhang   }
5820880e062SHong Zhang 
5830880e062SHong Zhang   if (roworiented) {
5840880e062SHong Zhang     stepval = (n - 1) * bs;
5850880e062SHong Zhang   } else {
5860880e062SHong Zhang     stepval = (m - 1) * bs;
5870880e062SHong Zhang   }
5880880e062SHong Zhang   for (i = 0; i < m; i++) {
5890880e062SHong Zhang     if (im[i] < 0) continue;
5906bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5910880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5920880e062SHong Zhang       row = im[i] - rstart;
5930880e062SHong Zhang       for (j = 0; j < n; j++) {
594f3f98c53SJed Brown         if (im[i] > in[j]) {
595f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
596e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
597f3f98c53SJed Brown         }
5980880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5990880e062SHong Zhang         if ((roworiented) && (n == 1)) {
600f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
6010880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
602f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6030880e062SHong Zhang         } else { /* Here a copy is required */
6040880e062SHong Zhang           if (roworiented) {
6050880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6060880e062SHong Zhang           } else {
6070880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6080880e062SHong Zhang           }
6090880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
610ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6110880e062SHong Zhang           }
6120880e062SHong Zhang           barray -= bs2;
6130880e062SHong Zhang         }
6140880e062SHong Zhang 
6150880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6160880e062SHong Zhang           col = in[j] - cstart;
6179566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
618f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
619f7d195e4SLawrence Mitchell           continue;
620f7d195e4SLawrence Mitchell         } else {
621f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6220880e062SHong Zhang           if (mat->was_assembled) {
62348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6240880e062SHong Zhang 
6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
6260880e062SHong Zhang   #if defined(PETSC_USE_CTABLE)
6279371c9d4SSatish Balay             {
6289371c9d4SSatish Balay               PetscInt data;
629eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
63008401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
6310880e062SHong Zhang             }
6320880e062SHong Zhang   #else
63308401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
6340880e062SHong Zhang   #endif
6350880e062SHong Zhang #endif
6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
637eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
6380880e062SHong Zhang             col = (col - 1) / bs;
6390880e062SHong Zhang #else
6400880e062SHong Zhang             col = (baij->colmap[in[j]] - 1) / bs;
6410880e062SHong Zhang #endif
6420880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
6439566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6440880e062SHong Zhang               col = in[j];
6450880e062SHong Zhang             }
64626fbe8dcSKarl Rupp           } else col = in[j];
6479566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6480880e062SHong Zhang         }
6490880e062SHong Zhang       }
6500880e062SHong Zhang     } else {
6515f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6520880e062SHong Zhang       if (!baij->donotstash) {
6530880e062SHong Zhang         if (roworiented) {
6549566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6550880e062SHong Zhang         } else {
6569566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6570880e062SHong Zhang         }
6580880e062SHong Zhang       }
6590880e062SHong Zhang     }
6600880e062SHong Zhang   }
6613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
665d71ae5a4SJacob Faibussowitsch {
666f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
667d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
668d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay   PetscFunctionBegin;
671a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
67254c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
67354c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
674a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
675a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
676a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
67754c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
67854c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
679a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
680a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
6819566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
682a30f8f8cSSatish Balay         } else {
68348a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
685eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
686a30f8f8cSSatish Balay           data--;
687a30f8f8cSSatish Balay #else
688a30f8f8cSSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
689a30f8f8cSSatish Balay #endif
690a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
691a30f8f8cSSatish Balay           else {
692a30f8f8cSSatish Balay             col = data + idxn[j] % bs;
6939566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
694a30f8f8cSSatish Balay           }
695a30f8f8cSSatish Balay         }
696a30f8f8cSSatish Balay       }
697f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
698a30f8f8cSSatish Balay   }
6993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700a30f8f8cSSatish Balay }
701a30f8f8cSSatish Balay 
702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
703d71ae5a4SJacob Faibussowitsch {
704a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
705a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
706a30f8f8cSSatish Balay 
707a30f8f8cSSatish Balay   PetscFunctionBegin;
708a30f8f8cSSatish Balay   if (baij->size == 1) {
7099566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
710a30f8f8cSSatish Balay   } else {
711a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
7129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
7139566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
7149371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7159371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
7169566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7179371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7189371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
7191c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7208f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7219566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7220b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7230b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7240b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
7250b8dc8d2SHong Zhang       PetscReal    *rsum, *rsum2, vabs;
726899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
727d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7280b8dc8d2SHong Zhang       MatScalar    *v;
7290b8dc8d2SHong Zhang 
7309566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2));
7319566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
7320b8dc8d2SHong Zhang       /* Amat */
7339371c9d4SSatish Balay       v  = amat->a;
7349371c9d4SSatish Balay       jj = amat->j;
7350b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7360b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7370b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7380b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7399371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7409371c9d4SSatish Balay           jj++;
7410b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7420b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7439371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7449371c9d4SSatish Balay               v++;
7450b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7460b8dc8d2SHong Zhang               /* non-diagonal block */
7470b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7480b8dc8d2SHong Zhang             }
7490b8dc8d2SHong Zhang           }
7500b8dc8d2SHong Zhang         }
7519566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7520b8dc8d2SHong Zhang       }
7530b8dc8d2SHong Zhang       /* Bmat */
7549371c9d4SSatish Balay       v  = bmat->a;
7559371c9d4SSatish Balay       jj = bmat->j;
7560b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7570b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7580b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7590b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7609371c9d4SSatish Balay           gcol = bs * garray[*jj];
7619371c9d4SSatish Balay           jj++;
7620b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7630b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7649371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7659371c9d4SSatish Balay               v++;
7660b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7670b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7680b8dc8d2SHong Zhang             }
7690b8dc8d2SHong Zhang           }
7700b8dc8d2SHong Zhang         }
7719566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7720b8dc8d2SHong Zhang       }
7731c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7740b8dc8d2SHong Zhang       *norm = 0.0;
775d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
7760b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7770b8dc8d2SHong Zhang       }
7789566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum, rsum2));
779f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
780a30f8f8cSSatish Balay   }
7813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
782a30f8f8cSSatish Balay }
783a30f8f8cSSatish Balay 
784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
785d71ae5a4SJacob Faibussowitsch {
786a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7871302d50aSBarry Smith   PetscInt      nstash, reallocs;
788a30f8f8cSSatish Balay 
789a30f8f8cSSatish Balay   PetscFunctionBegin;
7903ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
791a30f8f8cSSatish Balay 
7929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7949566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7959566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7969566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7979566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
799a30f8f8cSSatish Balay }
800a30f8f8cSSatish Balay 
801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
802d71ae5a4SJacob Faibussowitsch {
803a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
804a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
80513f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
806e44c0bd4SBarry Smith   PetscInt     *row, *col;
807ace3abfcSBarry Smith   PetscBool     other_disassembled;
80813f74950SBarry Smith   PetscMPIInt   n;
809ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
810a30f8f8cSSatish Balay   MatScalar    *val;
811a30f8f8cSSatish Balay 
81291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
813a30f8f8cSSatish Balay   PetscFunctionBegin;
8144cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
815a30f8f8cSSatish Balay     while (1) {
8169566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
817a30f8f8cSSatish Balay       if (!flg) break;
818a30f8f8cSSatish Balay 
819a30f8f8cSSatish Balay       for (i = 0; i < n;) {
820a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
82126fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
82226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
82326fbe8dcSKarl Rupp         }
824a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
825a30f8f8cSSatish Balay         else ncols = n - i;
826a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8279566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
828a30f8f8cSSatish Balay         i = j;
829a30f8f8cSSatish Balay       }
830a30f8f8cSSatish Balay     }
8319566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
832a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
833a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
834a30f8f8cSSatish Balay        restore the original flags */
835a30f8f8cSSatish Balay     r1 = baij->roworiented;
836a30f8f8cSSatish Balay     r2 = a->roworiented;
83791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
83826fbe8dcSKarl Rupp 
839a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
840a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
84126fbe8dcSKarl Rupp 
84291c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
843a30f8f8cSSatish Balay     while (1) {
8449566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
845a30f8f8cSSatish Balay       if (!flg) break;
846a30f8f8cSSatish Balay 
847a30f8f8cSSatish Balay       for (i = 0; i < n;) {
848a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
84926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
85026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
85126fbe8dcSKarl Rupp         }
852a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
853a30f8f8cSSatish Balay         else ncols = n - i;
8549566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
855a30f8f8cSSatish Balay         i = j;
856a30f8f8cSSatish Balay       }
857a30f8f8cSSatish Balay     }
8589566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
85926fbe8dcSKarl Rupp 
860a30f8f8cSSatish Balay     baij->roworiented = r1;
861a30f8f8cSSatish Balay     a->roworiented    = r2;
86226fbe8dcSKarl Rupp 
86391c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */
864a30f8f8cSSatish Balay   }
865a30f8f8cSSatish Balay 
8669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
868a30f8f8cSSatish Balay 
869a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
8706aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
871a30f8f8cSSatish Balay   /*
872a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
873a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
874a30f8f8cSSatish Balay   */
875a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8765f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
87748a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
878a30f8f8cSSatish Balay   }
879a30f8f8cSSatish Balay 
8809371c9d4SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ }
8819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
883a30f8f8cSSatish Balay 
8849566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
88526fbe8dcSKarl Rupp 
886f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8874f9cfa9eSBarry Smith 
8884f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8894f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
890e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8911c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
892e56f5c9eSBarry Smith   }
8933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8979804daf3SBarry Smith #include <petscdraw.h>
898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
899d71ae5a4SJacob Faibussowitsch {
900a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
901d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
9027da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
903ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
904b0a32e0cSBarry Smith   PetscViewer       sviewer;
905f3ef73ceSBarry Smith   PetscViewerFormat format;
906a30f8f8cSSatish Balay 
907a30f8f8cSSatish Balay   PetscFunctionBegin;
9089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
9099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
91032077d6dSBarry Smith   if (iascii) {
9119566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
912456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
913a30f8f8cSSatish Balay       MatInfo info;
9149566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
9159566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9169566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9179371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
9189371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
9199566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9209566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9219566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9229566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9239566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9249566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9259566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9269566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9273ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
928fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9299566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9303ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
931c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9323ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
933a30f8f8cSSatish Balay     }
934a30f8f8cSSatish Balay   }
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay   if (isdraw) {
937b0a32e0cSBarry Smith     PetscDraw draw;
938ace3abfcSBarry Smith     PetscBool isnull;
9399566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9409566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9413ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
942a30f8f8cSSatish Balay   }
943a30f8f8cSSatish Balay 
9447da1fb6eSBarry Smith   {
945a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
946a30f8f8cSSatish Balay     Mat           A;
94765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
94865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
949d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
950a30f8f8cSSatish Balay     MatScalar    *a;
9513e219373SBarry Smith     const char   *matname;
952a30f8f8cSSatish Balay 
953f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9549566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
955dd400576SPatrick Sanan     if (rank == 0) {
9569566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
957a30f8f8cSSatish Balay     } else {
9589566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
959a30f8f8cSSatish Balay     }
9609566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9619566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
963a30f8f8cSSatish Balay 
964a30f8f8cSSatish Balay     /* copy over the A part */
96565d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9669371c9d4SSatish Balay     ai   = Aloc->i;
9679371c9d4SSatish Balay     aj   = Aloc->j;
9689371c9d4SSatish Balay     a    = Aloc->a;
9699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
970a30f8f8cSSatish Balay 
971a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
972e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
97326fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
974a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
975e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
976a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9779566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
97826fbe8dcSKarl Rupp           col++;
97926fbe8dcSKarl Rupp           a += bs;
980a30f8f8cSSatish Balay         }
981a30f8f8cSSatish Balay       }
982a30f8f8cSSatish Balay     }
983a30f8f8cSSatish Balay     /* copy over the B part */
98465d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9859371c9d4SSatish Balay     ai   = Bloc->i;
9869371c9d4SSatish Balay     aj   = Bloc->j;
9879371c9d4SSatish Balay     a    = Bloc->a;
988a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
989e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
99026fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
991a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
992a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
993a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9949566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
99526fbe8dcSKarl Rupp           col++;
99626fbe8dcSKarl Rupp           a += bs;
997a30f8f8cSSatish Balay         }
998a30f8f8cSSatish Balay       }
999a30f8f8cSSatish Balay     }
10009566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
10019566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
10029566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
1003a30f8f8cSSatish Balay     /*
1004a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
1005b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
1006a30f8f8cSSatish Balay     */
10079566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
100823a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1009dd400576SPatrick Sanan     if (rank == 0) {
101023a3927dSBarry Smith       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname));
10119566063dSJacob Faibussowitsch       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer));
1012a30f8f8cSSatish Balay     }
10139566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
10149566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
10159566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
1016a30f8f8cSSatish Balay   }
10173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1018a30f8f8cSSatish Balay }
1019a30f8f8cSSatish Balay 
1020618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1021618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1022d1654148SHong Zhang 
1023d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1024d71ae5a4SJacob Faibussowitsch {
1025ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1026a30f8f8cSSatish Balay 
1027a30f8f8cSSatish Balay   PetscFunctionBegin;
10289566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10309566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10319566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1032d1654148SHong Zhang   if (iascii || isdraw || issocket) {
10339566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
10341baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1036a30f8f8cSSatish Balay }
1037a30f8f8cSSatish Balay 
1038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1039d71ae5a4SJacob Faibussowitsch {
1040547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1041eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10426de40e93SBarry Smith   PetscScalar       *from;
10436de40e93SBarry Smith   const PetscScalar *x;
1044547795f9SHong Zhang 
1045547795f9SHong Zhang   PetscFunctionBegin;
1046547795f9SHong Zhang   /* diagonal part */
10479566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1048629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1049629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1050629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1051547795f9SHong Zhang 
1052547795f9SHong Zhang   /* subdiagonal part */
10535f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10549566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1055547795f9SHong Zhang 
1056547795f9SHong Zhang   /* copy x into the vec slvec0 */
10579566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10589566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1059547795f9SHong Zhang 
10609566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10629566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1063547795f9SHong Zhang 
10649566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1066547795f9SHong Zhang   /* supperdiagonal part */
10679566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1069547795f9SHong Zhang }
1070547795f9SHong Zhang 
1071d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1072d71ae5a4SJacob Faibussowitsch {
1073a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1074eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1075d9ca1df4SBarry Smith   PetscScalar       *from;
1076d9ca1df4SBarry Smith   const PetscScalar *x;
1077a9d4b620SHong Zhang 
1078a9d4b620SHong Zhang   PetscFunctionBegin;
1079a9d4b620SHong Zhang   /* diagonal part */
10809566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1081629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1082629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1083629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1084a9d4b620SHong Zhang 
1085a9d4b620SHong Zhang   /* subdiagonal part */
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1087fc165ae2SBarry Smith 
1088a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10899566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10909566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1091a9d4b620SHong Zhang 
10929566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1095fc165ae2SBarry Smith 
10969566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10979566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1098a9d4b620SHong Zhang   /* supperdiagonal part */
10999566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
11003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1101a9d4b620SHong Zhang }
1102a9d4b620SHong Zhang 
1103d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1104d71ae5a4SJacob Faibussowitsch {
1105eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1106eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1107629a200eSBarry Smith   PetscScalar       *from;
1108eb1ec7c1SStefano Zampini   const PetscScalar *x;
1109eb1ec7c1SStefano Zampini 
1110eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1111eb1ec7c1SStefano Zampini   /* diagonal part */
11129566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1113629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1114629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1115eb1ec7c1SStefano Zampini 
1116eb1ec7c1SStefano Zampini   /* subdiagonal part */
11175f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
11189566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1119eb1ec7c1SStefano Zampini 
1120eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11219566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11239566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11249566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1125eb1ec7c1SStefano Zampini 
11269566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11289566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1129eb1ec7c1SStefano Zampini 
1130eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1133eb1ec7c1SStefano Zampini }
1134eb1ec7c1SStefano Zampini 
1135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1136d71ae5a4SJacob Faibussowitsch {
1137de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1138d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1139629a200eSBarry Smith   PetscScalar       *from;
1140d9ca1df4SBarry Smith   const PetscScalar *x;
1141a9d4b620SHong Zhang 
1142a9d4b620SHong Zhang   PetscFunctionBegin;
1143a9d4b620SHong Zhang   /* diagonal part */
11449566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1145629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1146629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1147a9d4b620SHong Zhang 
1148a9d4b620SHong Zhang   /* subdiagonal part */
11499566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1150a9d4b620SHong Zhang 
1151a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11529566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11539566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11549566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11559566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1156a9d4b620SHong Zhang 
11579566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11599566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1160a9d4b620SHong Zhang 
1161a9d4b620SHong Zhang   /* supperdiagonal part */
11629566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1164a9d4b620SHong Zhang }
1165a9d4b620SHong Zhang 
1166a30f8f8cSSatish Balay /*
1167a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1168a30f8f8cSSatish Balay    diagonal block
1169a30f8f8cSSatish Balay */
1170d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1171d71ae5a4SJacob Faibussowitsch {
1172a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1173a30f8f8cSSatish Balay 
1174a30f8f8cSSatish Balay   PetscFunctionBegin;
117508401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11769566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1178a30f8f8cSSatish Balay }
1179a30f8f8cSSatish Balay 
1180d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1181d71ae5a4SJacob Faibussowitsch {
1182a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1183a30f8f8cSSatish Balay 
1184a30f8f8cSSatish Balay   PetscFunctionBegin;
11859566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11869566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1188a30f8f8cSSatish Balay }
1189a30f8f8cSSatish Balay 
1190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1191d71ae5a4SJacob Faibussowitsch {
1192d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1193d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1194d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1195d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1196899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1197d0d4cfc2SHong Zhang 
1198a30f8f8cSSatish Balay   PetscFunctionBegin;
11995f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1200d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1201d0d4cfc2SHong Zhang 
1202d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1203d0d4cfc2SHong Zhang     /*
1204d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1205d0d4cfc2SHong Zhang     */
1206d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1207d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1208d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1209d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1210d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
121126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1212d0d4cfc2SHong Zhang     }
12139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1214d0d4cfc2SHong Zhang   }
1215d0d4cfc2SHong Zhang 
12165f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1217d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1218d0d4cfc2SHong Zhang 
12199371c9d4SSatish Balay   pvA = &vworkA;
12209371c9d4SSatish Balay   pcA = &cworkA;
12219371c9d4SSatish Balay   pvB = &vworkB;
12229371c9d4SSatish Balay   pcB = &cworkB;
12239371c9d4SSatish Balay   if (!v) {
12249371c9d4SSatish Balay     pvA = NULL;
12259371c9d4SSatish Balay     pvB = NULL;
12269371c9d4SSatish Balay   }
12279371c9d4SSatish Balay   if (!idx) {
12289371c9d4SSatish Balay     pcA = NULL;
12299371c9d4SSatish Balay     if (!v) pcB = NULL;
12309371c9d4SSatish Balay   }
12319566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12329566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1233d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1234d0d4cfc2SHong Zhang 
1235d0d4cfc2SHong Zhang   cmap = mat->garray;
1236d0d4cfc2SHong Zhang   if (v || idx) {
1237d0d4cfc2SHong Zhang     if (nztot) {
1238d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1239d0d4cfc2SHong Zhang       PetscInt imark = -1;
1240d0d4cfc2SHong Zhang       if (v) {
1241d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1242d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1243d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1244d0d4cfc2SHong Zhang           else break;
1245d0d4cfc2SHong Zhang         }
1246d0d4cfc2SHong Zhang         imark = i;
1247d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1248d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1249d0d4cfc2SHong Zhang       }
1250d0d4cfc2SHong Zhang       if (idx) {
1251d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1252d0d4cfc2SHong Zhang         if (imark > -1) {
1253ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1254d0d4cfc2SHong Zhang         } else {
1255d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
125626fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1257d0d4cfc2SHong Zhang             else break;
1258d0d4cfc2SHong Zhang           }
1259d0d4cfc2SHong Zhang           imark = i;
1260d0d4cfc2SHong Zhang         }
1261d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1262d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1263d0d4cfc2SHong Zhang       }
1264d0d4cfc2SHong Zhang     } else {
1265f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1266f4259b30SLisandro Dalcin       if (v) *v = NULL;
1267d0d4cfc2SHong Zhang     }
1268d0d4cfc2SHong Zhang   }
1269d0d4cfc2SHong Zhang   *nz = nztot;
12709566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12719566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1273a30f8f8cSSatish Balay }
1274a30f8f8cSSatish Balay 
1275d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1276d71ae5a4SJacob Faibussowitsch {
1277a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1278a30f8f8cSSatish Balay 
1279a30f8f8cSSatish Balay   PetscFunctionBegin;
12805f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1281a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1283a30f8f8cSSatish Balay }
1284a30f8f8cSSatish Balay 
1285d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1286d71ae5a4SJacob Faibussowitsch {
1287d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1288d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1289d0d4cfc2SHong Zhang 
1290d0d4cfc2SHong Zhang   PetscFunctionBegin;
1291d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1293d0d4cfc2SHong Zhang }
1294d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1295d71ae5a4SJacob Faibussowitsch {
1296d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1297d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1298d0d4cfc2SHong Zhang 
1299d0d4cfc2SHong Zhang   PetscFunctionBegin;
1300d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
13013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1302d0d4cfc2SHong Zhang }
1303d0d4cfc2SHong Zhang 
1304d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1305d71ae5a4SJacob Faibussowitsch {
13065f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
13075f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
13082726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
13092726fb6dSPierre Jolivet 
13109566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
13119566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
13125f80ce2aSJacob Faibussowitsch   }
13133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13142726fb6dSPierre Jolivet }
13152726fb6dSPierre Jolivet 
1316d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1317d71ae5a4SJacob Faibussowitsch {
131899cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
131999cafbc1SBarry Smith 
132099cafbc1SBarry Smith   PetscFunctionBegin;
13219566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13229566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
132499cafbc1SBarry Smith }
132599cafbc1SBarry Smith 
1326d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1327d71ae5a4SJacob Faibussowitsch {
132899cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
132999cafbc1SBarry Smith 
133099cafbc1SBarry Smith   PetscFunctionBegin;
13319566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13329566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
133499cafbc1SBarry Smith }
133599cafbc1SBarry Smith 
13367dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
133736032a97SHong Zhang    Input: isrow       - distributed(parallel),
133836032a97SHong Zhang           iscol_local - locally owned (seq)
133936032a97SHong Zhang */
1340d71ae5a4SJacob Faibussowitsch PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1341d71ae5a4SJacob Faibussowitsch {
13428f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13438f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
134436032a97SHong Zhang 
134536032a97SHong Zhang   PetscFunctionBegin;
13469566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13479566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
13481098a8e8SHong Zhang   if (sz1 > sz2) {
13491098a8e8SHong Zhang     *flg = PETSC_FALSE;
13503ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13511098a8e8SHong Zhang   }
13528f46ffcaSHong Zhang 
13539566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13549566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13558f46ffcaSHong Zhang 
13569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13589566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13599566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13609566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13619566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13628f46ffcaSHong Zhang 
13638f46ffcaSHong Zhang   nmatch = 0;
13648f46ffcaSHong Zhang   k      = 0;
13658f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13668f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13678f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13689371c9d4SSatish Balay         k = j;
13699371c9d4SSatish Balay         nmatch++;
13708f46ffcaSHong Zhang         break;
13718f46ffcaSHong Zhang       }
13728f46ffcaSHong Zhang     }
13738f46ffcaSHong Zhang   }
13749566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13759566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13769566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13779566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13781098a8e8SHong Zhang   if (nmatch < sz1) {
13791098a8e8SHong Zhang     *flg = PETSC_FALSE;
13801098a8e8SHong Zhang   } else {
13811098a8e8SHong Zhang     *flg = PETSC_TRUE;
13821098a8e8SHong Zhang   }
13833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13848f46ffcaSHong Zhang }
138536032a97SHong Zhang 
1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1387d71ae5a4SJacob Faibussowitsch {
138836032a97SHong Zhang   IS        iscol_local;
138936032a97SHong Zhang   PetscInt  csize;
139036032a97SHong Zhang   PetscBool isequal;
139136032a97SHong Zhang 
139236032a97SHong Zhang   PetscFunctionBegin;
13939566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
139436032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13959566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13965f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
139736032a97SHong Zhang   } else {
1398068661f9SToby Isaac     PetscBool issorted;
1399068661f9SToby Isaac 
14009566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
14019566063dSJacob Faibussowitsch     PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
14029566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
14035f80ce2aSJacob Faibussowitsch     PetscCheck(isequal && issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must equal isrow and be sorted");
14048f46ffcaSHong Zhang   }
14058f46ffcaSHong Zhang 
14067dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
14079566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat));
14088f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
14099566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14109566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14118f46ffcaSHong Zhang   }
14123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14138f46ffcaSHong Zhang }
14148f46ffcaSHong Zhang 
1415d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1416d71ae5a4SJacob Faibussowitsch {
1417a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1418a30f8f8cSSatish Balay 
1419a30f8f8cSSatish Balay   PetscFunctionBegin;
14209566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14219566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1423a30f8f8cSSatish Balay }
1424a30f8f8cSSatish Balay 
1425d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1426d71ae5a4SJacob Faibussowitsch {
1427a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1428a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14293966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1430a30f8f8cSSatish Balay 
1431a30f8f8cSSatish Balay   PetscFunctionBegin;
1432d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
143326fbe8dcSKarl Rupp 
14349566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
143526fbe8dcSKarl Rupp 
14369371c9d4SSatish Balay   isend[0] = info->nz_used;
14379371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14389371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14399371c9d4SSatish Balay   isend[3] = info->memory;
14409371c9d4SSatish Balay   isend[4] = info->mallocs;
144126fbe8dcSKarl Rupp 
14429566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
144326fbe8dcSKarl Rupp 
14449371c9d4SSatish Balay   isend[0] += info->nz_used;
14459371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14469371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14479371c9d4SSatish Balay   isend[3] += info->memory;
14489371c9d4SSatish Balay   isend[4] += info->mallocs;
1449a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1450a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1451a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1452a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1453a30f8f8cSSatish Balay     info->memory       = isend[3];
1454a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1455a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14561c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
145726fbe8dcSKarl Rupp 
1458a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1459a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1460a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1461a30f8f8cSSatish Balay     info->memory       = irecv[3];
1462a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1463a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14641c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
146526fbe8dcSKarl Rupp 
1466a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1467a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1468a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1469a30f8f8cSSatish Balay     info->memory       = irecv[3];
1470a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
147198921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1472a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1473a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1474a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
14753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1476a30f8f8cSSatish Balay }
1477a30f8f8cSSatish Balay 
1478d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1479d71ae5a4SJacob Faibussowitsch {
1480a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1481d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1482a30f8f8cSSatish Balay 
1483a30f8f8cSSatish Balay   PetscFunctionBegin;
1484e98b92d7SKris Buschelman   switch (op) {
1485512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1486e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
148728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1488a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1489c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1490e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
149143674050SBarry Smith     MatCheckPreallocated(A, 1);
14929566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14939566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1494e98b92d7SKris Buschelman     break;
1495e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
149643674050SBarry Smith     MatCheckPreallocated(A, 1);
14974e0d8c25SBarry Smith     a->roworiented = flg;
149826fbe8dcSKarl Rupp 
14999566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15009566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1501e98b92d7SKris Buschelman     break;
15028c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1503d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1504d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1505d71ae5a4SJacob Faibussowitsch     break;
1506d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1507d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1508d71ae5a4SJacob Faibussowitsch     break;
1509d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1510d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1511d71ae5a4SJacob Faibussowitsch     break;
1512d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
1513d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1514d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15150f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1516eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1517547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1518eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1519eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1520eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1521b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1522eb1ec7c1SStefano Zampini     }
15230f2140c7SStefano Zampini #endif
1524eeffb40dSHong Zhang     break;
1525ffa07934SHong Zhang   case MAT_SPD:
1526d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
1527d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1528d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1529eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1530eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1531eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1532eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1533eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1534eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1535eb1ec7c1SStefano Zampini     }
1536eb1ec7c1SStefano Zampini #endif
1537eeffb40dSHong Zhang     break;
153877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
153943674050SBarry Smith     MatCheckPreallocated(A, 1);
15409566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1541eeffb40dSHong Zhang     break;
15429a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1543b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
15445f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric");
15459566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
154677e54ba9SKris Buschelman     break;
1547d71ae5a4SJacob Faibussowitsch   case MAT_SPD_ETERNAL:
1548d71ae5a4SJacob Faibussowitsch     break;
1549d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1550d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1551d71ae5a4SJacob Faibussowitsch     break;
1552d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1553d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1554d71ae5a4SJacob Faibussowitsch     break;
1555d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1556d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1557d71ae5a4SJacob Faibussowitsch     break;
1558d71ae5a4SJacob Faibussowitsch   default:
1559d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
1560a30f8f8cSSatish Balay   }
15613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1562a30f8f8cSSatish Balay }
1563a30f8f8cSSatish Balay 
1564d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1565d71ae5a4SJacob Faibussowitsch {
1566a30f8f8cSSatish Balay   PetscFunctionBegin;
15677fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1568cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15699566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1570cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15719566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1572fc4dec0aSBarry Smith   }
15733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1574a30f8f8cSSatish Balay }
1575a30f8f8cSSatish Balay 
1576d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1577d71ae5a4SJacob Faibussowitsch {
1578a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1579a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
15805e90f9d9SHong Zhang   PetscInt      nv, m, n;
1581ace3abfcSBarry Smith   PetscBool     flg;
1582a30f8f8cSSatish Balay 
1583a30f8f8cSSatish Balay   PetscFunctionBegin;
1584a30f8f8cSSatish Balay   if (ll != rr) {
15859566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
15865f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1587a30f8f8cSSatish Balay   }
15883ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1589b3bf805bSHong Zhang 
15909566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
15915f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1592b3bf805bSHong Zhang 
15939566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
15945f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
15955e90f9d9SHong Zhang 
15969566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
15975e90f9d9SHong Zhang 
15985e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1599dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16005e90f9d9SHong Zhang 
16015e90f9d9SHong Zhang   /* scale the diagonal part */
1602dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1603a30f8f8cSSatish Balay 
16045e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
16059566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1606dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
16073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1608a30f8f8cSSatish Balay }
1609a30f8f8cSSatish Balay 
1610d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1611d71ae5a4SJacob Faibussowitsch {
1612f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1613a30f8f8cSSatish Balay 
1614a30f8f8cSSatish Balay   PetscFunctionBegin;
16159566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1617a30f8f8cSSatish Balay }
1618a30f8f8cSSatish Balay 
16196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1620a30f8f8cSSatish Balay 
1621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1622d71ae5a4SJacob Faibussowitsch {
1623a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1624a30f8f8cSSatish Balay   Mat           a, b, c, d;
1625ace3abfcSBarry Smith   PetscBool     flg;
1626a30f8f8cSSatish Balay 
1627a30f8f8cSSatish Balay   PetscFunctionBegin;
16289371c9d4SSatish Balay   a = matA->A;
16299371c9d4SSatish Balay   b = matA->B;
16309371c9d4SSatish Balay   c = matB->A;
16319371c9d4SSatish Balay   d = matB->B;
1632a30f8f8cSSatish Balay 
16339566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
163448a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
16351c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1637a30f8f8cSSatish Balay }
1638a30f8f8cSSatish Balay 
1639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1640d71ae5a4SJacob Faibussowitsch {
16414c7a3774SStefano Zampini   PetscBool isbaij;
16423c896bc6SHong Zhang 
16433c896bc6SHong Zhang   PetscFunctionBegin;
16449566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16455f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16463c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16473c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16489566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16499566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16509566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16513c896bc6SHong Zhang   } else {
16524c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16534c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16544c7a3774SStefano Zampini 
16559566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16569566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16573c896bc6SHong Zhang   }
16589566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16603c896bc6SHong Zhang }
16613c896bc6SHong Zhang 
1662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1663d71ae5a4SJacob Faibussowitsch {
16644fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16654fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16664fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16674fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16684fe895cdSHong Zhang 
16694fe895cdSHong Zhang   PetscFunctionBegin;
16704fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16714fe895cdSHong Zhang     PetscScalar alpha = a;
16724fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16734fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
16749566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1675792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16764fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
16774fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
16789566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1679792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16809566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1681ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16829566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16839566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
16849566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16854fe895cdSHong Zhang   } else {
16864de5dceeSHong Zhang     Mat       B;
16874de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16885f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16899566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16909566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16919566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16929566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
16939566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
16949566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
16959566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
16969566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
16979566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
16989566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
16999566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
17009566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
17019566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
17029566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
17039566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
17049566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
17059566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
17069566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
17074fe895cdSHong Zhang   }
17083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17094fe895cdSHong Zhang }
17104fe895cdSHong Zhang 
1711d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1712d71ae5a4SJacob Faibussowitsch {
17131302d50aSBarry Smith   PetscInt  i;
1714afebec48SHong Zhang   PetscBool flg;
1715a5e6ed63SBarry Smith 
17166849ba73SBarry Smith   PetscFunctionBegin;
17179566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1718a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17199566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
172048a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17214dcd73b1SHong Zhang   }
17223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1723a5e6ed63SBarry Smith }
1724a5e6ed63SBarry Smith 
1725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1726d71ae5a4SJacob Faibussowitsch {
17277d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17286f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17297d68702bSBarry Smith 
17307d68702bSBarry Smith   PetscFunctionBegin;
17316f33a894SBarry Smith   if (!Y->preallocated) {
17329566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17336f33a894SBarry Smith   } else if (!aij->nz) {
1734b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17359566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1736b83222d8SBarry Smith     aij->nonew = nonew;
17377d68702bSBarry Smith   }
17389566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17407d68702bSBarry Smith }
17417d68702bSBarry Smith 
1742d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d)
1743d71ae5a4SJacob Faibussowitsch {
17443b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
17453b49f96aSBarry Smith 
17463b49f96aSBarry Smith   PetscFunctionBegin;
17475f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
17489566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
17493b49f96aSBarry Smith   if (d) {
17503b49f96aSBarry Smith     PetscInt rstart;
17519566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
17523b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
17533b49f96aSBarry Smith   }
17543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17553b49f96aSBarry Smith }
17563b49f96aSBarry Smith 
1757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1758d71ae5a4SJacob Faibussowitsch {
1759a5b7ff6bSBarry Smith   PetscFunctionBegin;
1760a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1762a5b7ff6bSBarry Smith }
17633b49f96aSBarry Smith 
176417ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
176517ea310bSPierre Jolivet {
176617ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
176717ea310bSPierre Jolivet 
176817ea310bSPierre Jolivet   PetscFunctionBegin;
176917ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
177017ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
177117ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
177217ea310bSPierre Jolivet }
177317ea310bSPierre Jolivet 
17743964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1775a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1776a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1777a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
177897304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1779431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1780431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1781f4259b30SLisandro Dalcin                                        NULL,
1782f4259b30SLisandro Dalcin                                        NULL,
1783f4259b30SLisandro Dalcin                                        NULL,
1784f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1785f4259b30SLisandro Dalcin                                        NULL,
1786f4259b30SLisandro Dalcin                                        NULL,
178741f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1788a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
178997304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1790a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1791a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1792a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1793a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
179497304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1795a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1796a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1797a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1798f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1799f4259b30SLisandro Dalcin                                        NULL,
1800f4259b30SLisandro Dalcin                                        NULL,
1801f4259b30SLisandro Dalcin                                        NULL,
1802f4259b30SLisandro Dalcin                                        NULL,
180326cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1804f4259b30SLisandro Dalcin                                        NULL,
1805f4259b30SLisandro Dalcin                                        NULL,
1806a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1807f4259b30SLisandro Dalcin                                        NULL,
1808d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1809f4259b30SLisandro Dalcin                                        NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
18147dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1815d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1816a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18173c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1818f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1819a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18207d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
1823f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1824f4259b30SLisandro Dalcin                                        NULL,
1825f4259b30SLisandro Dalcin                                        NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1831f4259b30SLisandro Dalcin                                        NULL,
1832a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18337dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1839f4259b30SLisandro Dalcin                                        NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1844f4259b30SLisandro Dalcin                                        NULL,
184528d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1849f4259b30SLisandro Dalcin                                        NULL,
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
18575bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1858f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1859f4259b30SLisandro Dalcin                                        NULL,
1860f4259b30SLisandro Dalcin                                        NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                        NULL,
1863f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1864f4259b30SLisandro Dalcin                                        NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1874f4259b30SLisandro Dalcin                                        NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
18762726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        /*104*/ NULL,
187999cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1880d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1881d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
188295936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1883f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
18873b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1888f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
1906f4259b30SLisandro Dalcin                                        NULL,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1909f4259b30SLisandro Dalcin                                        NULL,
1910f4259b30SLisandro Dalcin                                        NULL,
1911f4259b30SLisandro Dalcin                                        NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
191346533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
1914f4259b30SLisandro Dalcin                                        NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
1917f4259b30SLisandro Dalcin                                        NULL,
1918d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1919d70f29a3SPierre Jolivet                                        NULL,
1920d70f29a3SPierre Jolivet                                        NULL,
192199a7f59eSMark Adams                                        NULL,
192299a7f59eSMark Adams                                        NULL,
19237fb60732SBarry Smith                                        NULL,
1924dec0b466SHong Zhang                                        /*150*/ NULL,
192517ea310bSPierre Jolivet                                        MatEliminateZeros_MPISBAIJ};
1926a30f8f8cSSatish Balay 
1927d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1928d71ae5a4SJacob Faibussowitsch {
1929476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1930535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19315d2a9ed1SStefano Zampini   PetscMPIInt   size;
1932a23d5eceSKris Buschelman 
1933a23d5eceSKris Buschelman   PetscFunctionBegin;
1934ad79cf63SBarry Smith   if (B->hash_active) {
1935aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1936ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1937ad79cf63SBarry Smith   }
1938ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
19399566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
19409566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19435f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19445f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1945899cda47SBarry Smith 
1946d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1947d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19485f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1949a23d5eceSKris Buschelman 
1950d0f46423SBarry Smith   B->rmap->bs = bs;
1951a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1952a23d5eceSKris Buschelman   b->mbs      = mbs;
1953a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1954de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1955de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1956a23d5eceSKris Buschelman 
1957ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1958d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1959d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1960a23d5eceSKris Buschelman 
1961d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1962d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1963a23d5eceSKris Buschelman 
1964cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1965eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
1966cb7b82ddSBarry Smith #else
19679566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1968cb7b82ddSBarry Smith #endif
19699566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
19709566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
19719566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
19729566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
19739566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
19749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
19759566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
19769566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
19779566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1978cb7b82ddSBarry Smith 
19799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
19809566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19819566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
19829566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
19839566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
1984cb7b82ddSBarry Smith 
1985ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
19869566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
19879566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
19889566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
1989a23d5eceSKris Buschelman 
19909566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
19919566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
199226fbe8dcSKarl Rupp 
1993526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
1994cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
1995cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
19963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1997a23d5eceSKris Buschelman }
1998a23d5eceSKris Buschelman 
1999d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2000d71ae5a4SJacob Faibussowitsch {
200102106b30SBarry Smith   PetscInt        m, rstart, cend;
2002f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2003f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2004f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2005bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
20063bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2007dfb205c3SBarry Smith 
2008dfb205c3SBarry Smith   PetscFunctionBegin;
20095f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
20109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
20119566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
20129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
20139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
20149566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2015dfb205c3SBarry Smith   m      = B->rmap->n / bs;
2016dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
2017dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
2018dfb205c3SBarry Smith 
20195f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
20209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2021dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2022dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20235f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20240cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2025dfb205c3SBarry Smith     JJ = jj + ii[i];
20260cd7f59aSBarry Smith     bd = 0;
2027dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20280cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2029dfb205c3SBarry Smith       JJ++;
20300cd7f59aSBarry Smith       bd++;
2031dfb205c3SBarry Smith     }
2032dfb205c3SBarry Smith     d = 0;
2033dfb205c3SBarry Smith     for (; j < nz; j++) {
2034dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2035dfb205c3SBarry Smith       d++;
2036dfb205c3SBarry Smith     }
2037dfb205c3SBarry Smith     d_nnz[i] = d;
20380cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20390cd7f59aSBarry Smith     nz       = nz - bd;
20400cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2041dfb205c3SBarry Smith   }
20429566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20439566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20449566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2045dfb205c3SBarry Smith 
2046dfb205c3SBarry Smith   values = (PetscScalar *)V;
204748a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2048dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2049dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2050dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2051dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2052bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2053dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20549566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2055bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2056bb80cfbbSStefano Zampini       PetscInt j;
20570cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
20580cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20599566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20600cd7f59aSBarry Smith       }
20610cd7f59aSBarry Smith     }
2062dfb205c3SBarry Smith   }
2063dfb205c3SBarry Smith 
20649566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
20653bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20663bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
20679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
20689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
20693bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20703bd0feecSPierre Jolivet 
20719566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
20723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2073dfb205c3SBarry Smith }
2074dfb205c3SBarry Smith 
20750bad9183SKris Buschelman /*MC
2076fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2077828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2078828413b8SBarry Smith    the matrix is stored.
2079828413b8SBarry Smith 
2080828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
208111a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
20820bad9183SKris Buschelman 
20832ef1f0ffSBarry Smith    Options Database Key:
208411a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
20850bad9183SKris Buschelman 
20862ef1f0ffSBarry Smith    Level: beginner
20872ef1f0ffSBarry Smith 
208811a5261eSBarry Smith    Note:
2089476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2090476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2091476417e5SBarry Smith 
20921cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20930bad9183SKris Buschelman M*/
20940bad9183SKris Buschelman 
2095d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2096d71ae5a4SJacob Faibussowitsch {
2097b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
209894ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2099b5df2d14SHong Zhang 
2100b5df2d14SHong Zhang   PetscFunctionBegin;
21014dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2102b0a32e0cSBarry Smith   B->data   = (void *)b;
2103aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2104b5df2d14SHong Zhang 
2105b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2106b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2107b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2108b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
210926fbe8dcSKarl Rupp 
21109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
21119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2112b5df2d14SHong Zhang 
2113b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2115b5df2d14SHong Zhang 
2116b5df2d14SHong Zhang   /* build cache for off array entries formed */
21179566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
211826fbe8dcSKarl Rupp 
2119b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21200298fd71SBarry Smith   b->colmap      = NULL;
21210298fd71SBarry Smith   b->garray      = NULL;
2122b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2123b5df2d14SHong Zhang 
2124b5df2d14SHong Zhang   /* stuff used in block assembly */
2125f4259b30SLisandro Dalcin   b->barray = NULL;
2126b5df2d14SHong Zhang 
2127b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2128f4259b30SLisandro Dalcin   b->lvec    = NULL;
2129f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2130f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2131f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2132f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2133f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2134f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2135f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2136b5df2d14SHong Zhang 
2137b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2138f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2139f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2140b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2141b5df2d14SHong Zhang 
2142b5df2d14SHong Zhang   /* hash table stuff */
2143f4259b30SLisandro Dalcin   b->ht           = NULL;
2144f4259b30SLisandro Dalcin   b->hd           = NULL;
2145b5df2d14SHong Zhang   b->ht_size      = 0;
2146b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2147b5df2d14SHong Zhang   b->ht_fact      = 0;
2148b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2149b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2150b5df2d14SHong Zhang 
21517dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21527a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21537a868f3eSHong Zhang 
2154f4259b30SLisandro Dalcin   b->in_loc = NULL;
2155f4259b30SLisandro Dalcin   b->v_loc  = NULL;
215659ffdab8SBarry Smith   b->n_loc  = 0;
215794ae4db5SBarry Smith 
21589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21599566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21609566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21626214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21639566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
21646214f412SHong Zhang #endif
2165d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
21669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2167d24d4204SJose E. Roman #endif
21689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
21699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2170aa5a9175SDahai Guo 
2171b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2172b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2173b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2174b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2175eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2176b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2177eb1ec7c1SStefano Zampini #else
2178b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2179eb1ec7c1SStefano Zampini #endif
218013647f61SHong Zhang 
21819566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2182d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
21839566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
218494ae4db5SBarry Smith   if (flg) {
218594ae4db5SBarry Smith     PetscReal fact = 1.39;
21869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
21879566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
218894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
21899566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
21909566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
219194ae4db5SBarry Smith   }
2192d0609cedSBarry Smith   PetscOptionsEnd();
21933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2194b5df2d14SHong Zhang }
2195b5df2d14SHong Zhang 
21962920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2197209238afSKris Buschelman /*MC
2198002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2199209238afSKris Buschelman 
220011a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
220111a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2202209238afSKris Buschelman 
220311a5261eSBarry Smith    Options Database Key:
2204c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2205209238afSKris Buschelman 
2206209238afSKris Buschelman   Level: beginner
2207209238afSKris Buschelman 
22081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2209209238afSKris Buschelman M*/
2210209238afSKris Buschelman 
2211b5df2d14SHong Zhang /*@C
2212b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2213b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2214b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2215b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2216b5df2d14SHong Zhang 
2217c3339decSBarry Smith   Collective
2218b5df2d14SHong Zhang 
2219b5df2d14SHong Zhang   Input Parameters:
22201c4f3114SJed Brown + B     - the matrix
2221bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2222bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2223b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2224b5df2d14SHong Zhang            submatrix  (same for all local rows)
2225b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22266d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22272ef1f0ffSBarry Smith            (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
222895742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2229b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2230b5df2d14SHong Zhang            submatrix (same for all local rows).
2231b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2232c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22332ef1f0ffSBarry Smith            (possibly different for each block row) or `NULL`.
2234b5df2d14SHong Zhang 
2235b5df2d14SHong Zhang   Options Database Keys:
2236a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2237b5df2d14SHong Zhang                      block calculations (much slower)
2238a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2239b5df2d14SHong Zhang 
22402ef1f0ffSBarry Smith   Level: intermediate
22412ef1f0ffSBarry Smith 
2242b5df2d14SHong Zhang   Notes:
2243b5df2d14SHong Zhang 
224411a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2245b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2246b5df2d14SHong Zhang 
224749a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
224849a6f317SBarry Smith 
2249b5df2d14SHong Zhang   Storage Information:
2250b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2251b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2252b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2253b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2254b5df2d14SHong Zhang 
2255b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
22562ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
22572ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2258b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
22592ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2260b5df2d14SHong Zhang 
226111a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2262aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22632ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2264aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2265aa95bbe8SBarry Smith 
2266b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2267b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2268b5df2d14SHong Zhang 
2269b5df2d14SHong Zhang .vb
2270b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2271a4b1a0f6SJed Brown           --------------------------
2272c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2273c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2274c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2275a4b1a0f6SJed Brown           --------------------------
2276b5df2d14SHong Zhang .ve
2277b5df2d14SHong Zhang 
2278b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2279b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
22806d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
228111a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2282b5df2d14SHong Zhang 
22832ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
22846d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
22852ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2286c2fc9fa9SBarry Smith 
2287b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
22882ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2289b5df2d14SHong Zhang 
22901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2291b5df2d14SHong Zhang @*/
2292d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2293d71ae5a4SJacob Faibussowitsch {
2294b5df2d14SHong Zhang   PetscFunctionBegin;
22956ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
22966ba663aaSJed Brown   PetscValidType(B, 1);
22976ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2298cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
22993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2300b5df2d14SHong Zhang }
2301b5df2d14SHong Zhang 
23022920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2303a30f8f8cSSatish Balay /*@C
230411a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2305a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2306a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
230720f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2308a30f8f8cSSatish Balay 
2309d083f849SBarry Smith   Collective
2310a30f8f8cSSatish Balay 
2311a30f8f8cSSatish Balay   Input Parameters:
2312a30f8f8cSSatish Balay + comm  - MPI communicator
231311a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
231420f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
231520f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2316a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2317a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
231820f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2319a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2320a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
232120f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
232220f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2323a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2324a30f8f8cSSatish Balay            submatrix (same for all local rows)
2325a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23266d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23272ef1f0ffSBarry Smith            (possibly different for each block block row) or `NULL`.
232895742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
232995742e49SBarry Smith            set its value even if it is zero.
2330a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2331a30f8f8cSSatish Balay            submatrix (same for all local rows).
2332a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2333a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23342ef1f0ffSBarry Smith            each block row) or `NULL`.
2335a30f8f8cSSatish Balay 
2336a30f8f8cSSatish Balay   Output Parameter:
2337a30f8f8cSSatish Balay . A - the matrix
2338a30f8f8cSSatish Balay 
2339a30f8f8cSSatish Balay   Options Database Keys:
2340a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2341a30f8f8cSSatish Balay                      block calculations (much slower)
2342a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2343a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2344a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2345a30f8f8cSSatish Balay 
23462ef1f0ffSBarry Smith   Level: intermediate
23472ef1f0ffSBarry Smith 
23482ef1f0ffSBarry Smith   Notes:
2349*77433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2350f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
235111a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2352175b88e8SBarry Smith 
2353d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
23546d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2355d1be2dadSMatthew Knepley 
2356a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2357a30f8f8cSSatish Balay   (possibly both).
2358a30f8f8cSSatish Balay 
235911a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2360a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2361a30f8f8cSSatish Balay 
236249a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
236349a6f317SBarry Smith 
2364a30f8f8cSSatish Balay   Storage Information:
2365a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2366a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2367a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2368a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2369a30f8f8cSSatish Balay 
2370a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
23712ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
23722ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2373a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
23742ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2375a30f8f8cSSatish Balay 
2376a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2377a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2378a30f8f8cSSatish Balay 
2379a30f8f8cSSatish Balay .vb
2380a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2381a4b1a0f6SJed Brown           --------------------------
2382c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2383c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2384c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2385a4b1a0f6SJed Brown           --------------------------
2386a30f8f8cSSatish Balay .ve
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2389a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
23906d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
23912ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2392a30f8f8cSSatish Balay 
23932ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23946d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
23952ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2396a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
23972ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2398a30f8f8cSSatish Balay 
23991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`
2400a30f8f8cSSatish Balay @*/
2401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2402d71ae5a4SJacob Faibussowitsch {
24031302d50aSBarry Smith   PetscMPIInt size;
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay   PetscFunctionBegin;
24069566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24079566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
24089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2409273d9f13SBarry Smith   if (size > 1) {
24109566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
24119566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2412273d9f13SBarry Smith   } else {
24139566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
24149566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2415273d9f13SBarry Smith   }
24163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2417a30f8f8cSSatish Balay }
2418a30f8f8cSSatish Balay 
2419d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2420d71ae5a4SJacob Faibussowitsch {
2421a30f8f8cSSatish Balay   Mat           mat;
2422a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2423d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2424387bc808SHong Zhang   PetscScalar  *array;
2425a30f8f8cSSatish Balay 
2426a30f8f8cSSatish Balay   PetscFunctionBegin;
2427f4259b30SLisandro Dalcin   *newmat = NULL;
242826fbe8dcSKarl Rupp 
24299566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24309566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24319566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2434e1b6402fSHong Zhang 
2435d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2436273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
243782327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24387fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24397fff6886SHong Zhang 
2440b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ *)mat->data;
2441a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2442a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2443a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2444a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2445a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2446a30f8f8cSSatish Balay 
2447a30f8f8cSSatish Balay   a->size         = oldmat->size;
2448a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2449a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2450a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2451f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2452f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2453a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2454f4259b30SLisandro Dalcin   a->barray       = NULL;
2455899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2456899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2457899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2458899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2459a30f8f8cSSatish Balay 
2460a30f8f8cSSatish Balay   /* hash table stuff */
2461f4259b30SLisandro Dalcin   a->ht           = NULL;
2462f4259b30SLisandro Dalcin   a->hd           = NULL;
2463a30f8f8cSSatish Balay   a->ht_size      = 0;
2464a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2465a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2466a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2467a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2468a30f8f8cSSatish Balay 
24699566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2470a30f8f8cSSatish Balay   if (oldmat->colmap) {
2471a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2472eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2473a30f8f8cSSatish Balay #else
24749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
24759566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2476a30f8f8cSSatish Balay #endif
2477f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2478387bc808SHong Zhang 
2479a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
24809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
24819566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2482f4259b30SLisandro Dalcin   } else a->garray = NULL;
2483a30f8f8cSSatish Balay 
24849566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
24859566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
24869566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
248782327fa8SHong Zhang 
24889566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
24899566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2490387bc808SHong Zhang 
24919566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(a->slvec1, &nt));
24929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec1, &array));
24939566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
24949566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
24959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec1, &array));
24969566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &array));
24979566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
24989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &array));
2499387bc808SHong Zhang 
2500387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25019566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2502387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
250382327fa8SHong Zhang 
25049566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
25059566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
25069566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2507a30f8f8cSSatish Balay   *newmat = mat;
25083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2509a30f8f8cSSatish Balay }
2510a30f8f8cSSatish Balay 
2511618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2512618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2513618cc2edSLisandro Dalcin 
2514d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2515d71ae5a4SJacob Faibussowitsch {
25167f489da9SVaclav Hapla   PetscBool isbinary;
251795936485SShri Abhyankar 
251895936485SShri Abhyankar   PetscFunctionBegin;
25199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25205f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25219566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
252395936485SShri Abhyankar }
252495936485SShri Abhyankar 
2525d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2526d71ae5a4SJacob Faibussowitsch {
252724d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2528f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)(a->B)->data;
2529ca54ac64SHong Zhang   PetscReal     atmp;
253087828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25311302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25321302d50aSBarry Smith   PetscMPIInt   rank, size;
25331302d50aSBarry Smith   PetscInt     *rowners_bs, dest, count, source;
253487828ca2SBarry Smith   PetscScalar  *va;
25358a1c53f2SBarry Smith   MatScalar    *ba;
2536f4c0e9e4SHong Zhang   MPI_Status    stat;
253724d5174aSHong Zhang 
253824d5174aSHong Zhang   PetscFunctionBegin;
25395f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25409566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25419566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2542f4c0e9e4SHong Zhang 
25439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2545f4c0e9e4SHong Zhang 
2546d0f46423SBarry Smith   bs  = A->rmap->bs;
2547f4c0e9e4SHong Zhang   mbs = a->mbs;
2548f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2549f4c0e9e4SHong Zhang   ba  = b->a;
2550f4c0e9e4SHong Zhang   bi  = b->i;
2551f4c0e9e4SHong Zhang   bj  = b->j;
2552f4c0e9e4SHong Zhang 
2553f4c0e9e4SHong Zhang   /* find ownerships */
2554d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2555f4c0e9e4SHong Zhang 
2556f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25579566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2558f4c0e9e4SHong Zhang 
2559f4c0e9e4SHong Zhang   /* row_max for B */
2560b8475685SHong Zhang   if (rank != size - 1) {
2561f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
25629371c9d4SSatish Balay       ncols = bi[1] - bi[0];
25639371c9d4SSatish Balay       bi++;
2564f4c0e9e4SHong Zhang       brow = bs * i;
2565f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2566f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2567f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2568ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
256904d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2570f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
25719371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
25729371c9d4SSatish Balay             ba++;
2573ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2574ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2575f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2576f4c0e9e4SHong Zhang           }
2577f4c0e9e4SHong Zhang         }
2578f4c0e9e4SHong Zhang         bj++;
2579f4c0e9e4SHong Zhang       }
2580f4c0e9e4SHong Zhang     }
2581f4c0e9e4SHong Zhang 
2582f4c0e9e4SHong Zhang     /* send values to its owners */
2583f4c0e9e4SHong Zhang     for (dest = rank + 1; dest < size; dest++) {
2584f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2585ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
25869566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2587ca54ac64SHong Zhang     }
2588f4c0e9e4SHong Zhang   }
2589f4c0e9e4SHong Zhang 
2590f4c0e9e4SHong Zhang   /* receive values */
2591ca54ac64SHong Zhang   if (rank) {
2592f4c0e9e4SHong Zhang     rvalues = work;
2593ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2594f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
25959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2596f4c0e9e4SHong Zhang       /* process values */
2597f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2598ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2599f4c0e9e4SHong Zhang       }
2600f4c0e9e4SHong Zhang     }
2601ca54ac64SHong Zhang   }
2602f4c0e9e4SHong Zhang 
26039566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
26049566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
26053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260624d5174aSHong Zhang }
26072798e883SHong Zhang 
2608d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2609d71ae5a4SJacob Faibussowitsch {
26102798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2611d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
26123649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2613ffe4fb16SHong Zhang   Vec                bb1;
26143649974fSBarry Smith   const PetscScalar *b;
2615ffe4fb16SHong Zhang 
2616ffe4fb16SHong Zhang   PetscFunctionBegin;
26175f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26185f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2619ffe4fb16SHong Zhang 
2620a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26219566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26223ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2623a2b30743SBarry Smith   }
2624a2b30743SBarry Smith 
2625ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2626ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26279566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2628ffe4fb16SHong Zhang       its--;
2629ffe4fb16SHong Zhang     }
2630ffe4fb16SHong Zhang 
26319566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2632ffe4fb16SHong Zhang     while (its--) {
2633ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26349566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2635ffe4fb16SHong Zhang 
2636ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26379566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26389566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26399566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26409566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2641ffe4fb16SHong Zhang 
26429566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2643ffe4fb16SHong Zhang 
2644ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26459566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26469566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26479566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2649ffe4fb16SHong Zhang 
2650ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2651629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2652629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2653ffe4fb16SHong Zhang 
26549566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26559566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
26569566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26579566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2658ffe4fb16SHong Zhang 
2659ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26609566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2661ffe4fb16SHong Zhang 
2662ffe4fb16SHong Zhang       /* local diagonal sweep */
26639566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2664ffe4fb16SHong Zhang     }
26659566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2666fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2668fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26699566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2670fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2671fa22f6d0SBarry Smith     Vec                xx1;
2672ace3abfcSBarry Smith     PetscBool          hasop;
267320f1ed55SBarry Smith     const PetscScalar *diag;
2674887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
267520f1ed55SBarry Smith     PetscInt           i, n;
2676fa22f6d0SBarry Smith 
2677fa22f6d0SBarry Smith     if (!mat->xx1) {
26789566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
26799566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2680fa22f6d0SBarry Smith     }
2681fa22f6d0SBarry Smith     xx1 = mat->xx1;
2682fa22f6d0SBarry Smith     bb1 = mat->bb1;
2683fa22f6d0SBarry Smith 
26849566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2685fa22f6d0SBarry Smith 
2686fa22f6d0SBarry Smith     if (!mat->diag) {
2687effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
26889566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
26899566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2690fa22f6d0SBarry Smith     }
26919566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2692fa22f6d0SBarry Smith 
2693fa22f6d0SBarry Smith     if (hasop) {
26949566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
26959566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
269620f1ed55SBarry Smith     } else {
269720f1ed55SBarry Smith       /*
269820f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
26999566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27009566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
270120f1ed55SBarry Smith       */
27029566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
27039566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
27049566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
27059566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
27069566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2707887ee2caSBarry Smith       if (omega == 1.0) {
270826fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
27099566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2710887ee2caSBarry Smith       } else {
271126fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
27129566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2713887ee2caSBarry Smith       }
27149566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
27159566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27169566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27179566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
271820f1ed55SBarry Smith     }
2719fa22f6d0SBarry Smith 
2720fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2721629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2722629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27239566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27249566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27259566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27269566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27279566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27299566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27309566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27319566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2732fa22f6d0SBarry Smith 
2733fa22f6d0SBarry Smith     /* local sweep */
27349566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27359566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2736f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2738ffe4fb16SHong Zhang }
2739ffe4fb16SHong Zhang 
2740dfb205c3SBarry Smith /*@
274111a5261eSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard
2742dfb205c3SBarry Smith   CSR format the local rows.
2743dfb205c3SBarry Smith 
2744d083f849SBarry Smith   Collective
2745dfb205c3SBarry Smith 
2746dfb205c3SBarry Smith   Input Parameters:
2747dfb205c3SBarry Smith + comm - MPI communicator
2748dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
274911a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2750dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
275111a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
27522ef1f0ffSBarry Smith        calculated if `N` is given) For square matrices `n` is almost always `m`.
27532ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27542ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2755483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2756dfb205c3SBarry Smith . j    - column indices
2757dfb205c3SBarry Smith - a    - matrix values
2758dfb205c3SBarry Smith 
2759dfb205c3SBarry Smith   Output Parameter:
2760dfb205c3SBarry Smith . mat - the matrix
2761dfb205c3SBarry Smith 
2762dfb205c3SBarry Smith   Level: intermediate
2763dfb205c3SBarry Smith 
2764dfb205c3SBarry Smith   Notes:
27652ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
27662ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
27672ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2768dfb205c3SBarry Smith 
27692ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2770dfb205c3SBarry Smith 
27711cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2772db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
2773dfb205c3SBarry Smith @*/
2774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2775d71ae5a4SJacob Faibussowitsch {
2776dfb205c3SBarry Smith   PetscFunctionBegin;
27775f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
27785f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
27799566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
27809566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
27819566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
27829566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
27833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2784dfb205c3SBarry Smith }
2785dfb205c3SBarry Smith 
2786dfb205c3SBarry Smith /*@C
278711a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2788dfb205c3SBarry Smith 
2789d083f849SBarry Smith   Collective
2790dfb205c3SBarry Smith 
2791dfb205c3SBarry Smith   Input Parameters:
27921c4f3114SJed Brown + B  - the matrix
2793dfb205c3SBarry Smith . bs - the block size
27942ef1f0ffSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2795dfb205c3SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2796dfb205c3SBarry Smith - v  - optional values in the matrix
2797dfb205c3SBarry Smith 
2798664954b6SBarry Smith   Level: advanced
2799664954b6SBarry Smith 
2800664954b6SBarry Smith   Notes:
28010cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28020cd7f59aSBarry Smith   and usually the numerical values as well
28030cd7f59aSBarry Smith 
280450c5228eSBarry Smith   Any entries below the diagonal are ignored
2805dfb205c3SBarry Smith 
28061cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`
2807dfb205c3SBarry Smith @*/
2808d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2809d71ae5a4SJacob Faibussowitsch {
2810dfb205c3SBarry Smith   PetscFunctionBegin;
2811cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2813dfb205c3SBarry Smith }
2814dfb205c3SBarry Smith 
2815d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2816d71ae5a4SJacob Faibussowitsch {
281710c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
281810c56fdeSHong Zhang   PetscInt    *indx;
281910c56fdeSHong Zhang   PetscScalar *values;
2820dfb205c3SBarry Smith 
28214dcd73b1SHong Zhang   PetscFunctionBegin;
28229566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
282310c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
282410c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2825de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
282610c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2827de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28284dcd73b1SHong Zhang 
28299566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28309371c9d4SSatish Balay     mbs = m / bs;
28319371c9d4SSatish Balay     Nbs = N / cbs;
283248a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2833da91a574SPierre Jolivet     nbs = n / cbs;
28344dcd73b1SHong Zhang 
28359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2836d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2837de25e9cbSPierre Jolivet 
28389566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28399566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2840de25e9cbSPierre Jolivet     if (rank == size - 1) {
2841de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28425f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2843de25e9cbSPierre Jolivet     }
2844de25e9cbSPierre Jolivet 
2845d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28469566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
284710c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
28489566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28494dcd73b1SHong Zhang       nnz = nnz / bs;
28504dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28519566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
28529566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28534dcd73b1SHong Zhang     }
28549566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28559566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28564dcd73b1SHong Zhang 
28579566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
28589566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28599566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28609566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
28619566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28629566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2863d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
28644dcd73b1SHong Zhang   }
28654dcd73b1SHong Zhang 
286610c56fdeSHong Zhang   /* numeric phase */
28679566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28689566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
28694dcd73b1SHong Zhang 
28709566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
28714dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
28729566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28734dcd73b1SHong Zhang     Ii = i + rstart;
28749566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
28759566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28764dcd73b1SHong Zhang   }
28779566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
28799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
28803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28814dcd73b1SHong Zhang }
2882