1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 626cec326SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 181d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 191d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237e56f5c9eSBarry Smith A->nonzerostate++; \ 238a30f8f8cSSatish Balay a_noinsert:; \ 239a30f8f8cSSatish Balay ailen[brow] = nrow; \ 240a8f51744SPierre Jolivet } while (0) 241e5e170daSBarry Smith 242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 243a8f51744SPierre Jolivet do { \ 244a30f8f8cSSatish Balay brow = row / bs; \ 2459371c9d4SSatish Balay rp = bj + bi[brow]; \ 2469371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2479371c9d4SSatish Balay rmax = bimax[brow]; \ 2489371c9d4SSatish Balay nrow = bilen[brow]; \ 249a30f8f8cSSatish Balay bcol = col / bs; \ 2509371c9d4SSatish Balay ridx = row % bs; \ 2519371c9d4SSatish Balay cidx = col % bs; \ 2529371c9d4SSatish Balay low = 0; \ 2539371c9d4SSatish Balay high = nrow; \ 254a30f8f8cSSatish Balay while (high - low > 3) { \ 255a30f8f8cSSatish Balay t = (low + high) / 2; \ 256a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 257a30f8f8cSSatish Balay else low = t; \ 258a30f8f8cSSatish Balay } \ 259a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 260a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 261a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 262a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 263a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 264a30f8f8cSSatish Balay else *bap = value; \ 265a30f8f8cSSatish Balay goto b_noinsert; \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay } \ 268a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2695f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 270fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 271a30f8f8cSSatish Balay N = nrow++ - 1; \ 272a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 276a30f8f8cSSatish Balay rp[_i] = bcol; \ 277a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 278e56f5c9eSBarry Smith B->nonzerostate++; \ 279a30f8f8cSSatish Balay b_noinsert:; \ 280a30f8f8cSSatish Balay bilen[brow] = nrow; \ 281a8f51744SPierre Jolivet } while (0) 282a30f8f8cSSatish Balay 283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 284da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 285a30f8f8cSSatish Balay */ 286d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 287d71ae5a4SJacob Faibussowitsch { 288a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 289a30f8f8cSSatish Balay MatScalar value; 290ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2911302d50aSBarry Smith PetscInt i, j, row, col; 292d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 293d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 294d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 300a30f8f8cSSatish Balay MatScalar *aa = a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 305a30f8f8cSSatish Balay MatScalar *ba = b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3081302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap, *bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3120298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3130298fd71SBarry Smith MatScalar *v_loc = NULL; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay if (!baij->donotstash) { 31759ffdab8SBarry Smith if (n > baij->n_loc) { 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32226fbe8dcSKarl Rupp 32359ffdab8SBarry Smith baij->n_loc = n; 32459ffdab8SBarry Smith } 32559ffdab8SBarry Smith in_loc = baij->in_loc; 32659ffdab8SBarry Smith v_loc = baij->v_loc; 327a30f8f8cSSatish Balay } 328a30f8f8cSSatish Balay 329a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 330a30f8f8cSSatish Balay if (im[i] < 0) continue; 3315f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 332a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 333a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 334a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33501b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33601b2bd88SHong Zhang if (a->ignore_ltriangular) { 33701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33901b2bd88SHong Zhang } 340a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 341a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3429371c9d4SSatish Balay brow = row / bs; 3439371c9d4SSatish Balay bcol = col / bs; 344a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 345db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 346db4deed7SKarl Rupp else value = v[i + j * m]; 347d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3489566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 349f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 350f7d195e4SLawrence Mitchell continue; 351f7d195e4SLawrence Mitchell } else { 352f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 353f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 354a30f8f8cSSatish Balay if (mat->was_assembled) { 35548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 357eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35871730473SSatish Balay col = col - 1; 359a30f8f8cSSatish Balay #else 36071730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 361a30f8f8cSSatish Balay #endif 362a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) { 3639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 364a30f8f8cSSatish Balay col = in[j]; 365a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 366a30f8f8cSSatish Balay B = baij->B; 367a30f8f8cSSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 3689371c9d4SSatish Balay bimax = b->imax; 3699371c9d4SSatish Balay bi = b->i; 3709371c9d4SSatish Balay bilen = b->ilen; 3719371c9d4SSatish Balay bj = b->j; 372a30f8f8cSSatish Balay ba = b->a; 37371730473SSatish Balay } else col += in[j] % bs; 374a30f8f8cSSatish Balay } else col = in[j]; 375db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 376db4deed7SKarl Rupp else value = v[i + j * m]; 377d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3789566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay } else { /* off processor entry */ 3825f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 383a30f8f8cSSatish Balay if (!baij->donotstash) { 3845080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 385a30f8f8cSSatish Balay n_loc = 0; 386a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 387f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 388a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 389a30f8f8cSSatish Balay if (roworiented) { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 391a30f8f8cSSatish Balay } else { 392a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay n_loc++; 395a30f8f8cSSatish Balay } 3969566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 404d71ae5a4SJacob Faibussowitsch { 40536bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 41036bd2089SBarry Smith const PetscScalar *value = v; 41136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41236bd2089SBarry Smith 41336bd2089SBarry Smith PetscFunctionBegin; 41436bd2089SBarry Smith if (col < row) { 4153ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41636bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41736bd2089SBarry Smith } 41836bd2089SBarry Smith rp = aj + ai[row]; 41936bd2089SBarry Smith ap = aa + bs2 * ai[row]; 42036bd2089SBarry Smith rmax = imax[row]; 42136bd2089SBarry Smith nrow = ailen[row]; 42236bd2089SBarry Smith value = v; 42336bd2089SBarry Smith low = 0; 42436bd2089SBarry Smith high = nrow; 42536bd2089SBarry Smith 42636bd2089SBarry Smith while (high - low > 7) { 42736bd2089SBarry Smith t = (low + high) / 2; 42836bd2089SBarry Smith if (rp[t] > col) high = t; 42936bd2089SBarry Smith else low = t; 43036bd2089SBarry Smith } 43136bd2089SBarry Smith for (i = low; i < high; i++) { 43236bd2089SBarry Smith if (rp[i] > col) break; 43336bd2089SBarry Smith if (rp[i] == col) { 43436bd2089SBarry Smith bap = ap + bs2 * i; 43536bd2089SBarry Smith if (roworiented) { 43636bd2089SBarry Smith if (is == ADD_VALUES) { 43736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 438ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43936bd2089SBarry Smith } 44036bd2089SBarry Smith } else { 44136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 442ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44336bd2089SBarry Smith } 44436bd2089SBarry Smith } 44536bd2089SBarry Smith } else { 44636bd2089SBarry Smith if (is == ADD_VALUES) { 44736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 448ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44936bd2089SBarry Smith } 45036bd2089SBarry Smith } else { 45136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 452ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45336bd2089SBarry Smith } 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith goto noinsert2; 45736bd2089SBarry Smith } 45836bd2089SBarry Smith } 45936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4605f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 46136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4629371c9d4SSatish Balay N = nrow++ - 1; 4639371c9d4SSatish Balay high++; 46436bd2089SBarry Smith /* shift up all the later entries in this row */ 4659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4669566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46736bd2089SBarry Smith rp[i] = col; 46836bd2089SBarry Smith bap = ap + bs2 * i; 46936bd2089SBarry Smith if (roworiented) { 47036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 471ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47236bd2089SBarry Smith } 47336bd2089SBarry Smith } else { 47436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 475ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } 47836bd2089SBarry Smith noinsert2:; 47936bd2089SBarry Smith ailen[row] = nrow; 4803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48136bd2089SBarry Smith } 48236bd2089SBarry Smith 48336bd2089SBarry Smith /* 48436bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48536bd2089SBarry Smith */ 486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 487d71ae5a4SJacob Faibussowitsch { 48836bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48936bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 49036bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 49136bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49236bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49336bd2089SBarry Smith const PetscScalar *value = v; 49436bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49536bd2089SBarry Smith 49636bd2089SBarry Smith PetscFunctionBegin; 49736bd2089SBarry Smith rp = aj + ai[row]; 49836bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49936bd2089SBarry Smith rmax = imax[row]; 50036bd2089SBarry Smith nrow = ailen[row]; 50136bd2089SBarry Smith low = 0; 50236bd2089SBarry Smith high = nrow; 50336bd2089SBarry Smith value = v; 50436bd2089SBarry Smith while (high - low > 7) { 50536bd2089SBarry Smith t = (low + high) / 2; 50636bd2089SBarry Smith if (rp[t] > col) high = t; 50736bd2089SBarry Smith else low = t; 50836bd2089SBarry Smith } 50936bd2089SBarry Smith for (i = low; i < high; i++) { 51036bd2089SBarry Smith if (rp[i] > col) break; 51136bd2089SBarry Smith if (rp[i] == col) { 51236bd2089SBarry Smith bap = ap + bs2 * i; 51336bd2089SBarry Smith if (roworiented) { 51436bd2089SBarry Smith if (is == ADD_VALUES) { 51536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 516ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } else { 51936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 520ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 52136bd2089SBarry Smith } 52236bd2089SBarry Smith } 52336bd2089SBarry Smith } else { 52436bd2089SBarry Smith if (is == ADD_VALUES) { 52536bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 526ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52736bd2089SBarry Smith bap += bs; 52836bd2089SBarry Smith } 52936bd2089SBarry Smith } else { 53036bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 531ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53236bd2089SBarry Smith bap += bs; 53336bd2089SBarry Smith } 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith goto noinsert2; 53736bd2089SBarry Smith } 53836bd2089SBarry Smith } 53936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5405f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 54136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5429371c9d4SSatish Balay N = nrow++ - 1; 5439371c9d4SSatish Balay high++; 54436bd2089SBarry Smith /* shift up all the later entries in this row */ 5459566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5469566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54736bd2089SBarry Smith rp[i] = col; 54836bd2089SBarry Smith bap = ap + bs2 * i; 54936bd2089SBarry Smith if (roworiented) { 55036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 551ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55236bd2089SBarry Smith } 55336bd2089SBarry Smith } else { 55436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 555ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55636bd2089SBarry Smith } 55736bd2089SBarry Smith } 55836bd2089SBarry Smith noinsert2:; 55936bd2089SBarry Smith ailen[row] = nrow; 5603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56136bd2089SBarry Smith } 56236bd2089SBarry Smith 56336bd2089SBarry Smith /* 56436bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56536bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56636bd2089SBarry Smith */ 567d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 568d71ae5a4SJacob Faibussowitsch { 5690880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 570f15d580aSBarry Smith const MatScalar *value; 571f15d580aSBarry Smith MatScalar *barray = baij->barray; 572ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 573899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 574476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 575476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5760880e062SHong Zhang 577a30f8f8cSSatish Balay PetscFunctionBegin; 5780880e062SHong Zhang if (!barray) { 5799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5800880e062SHong Zhang baij->barray = barray; 5810880e062SHong Zhang } 5820880e062SHong Zhang 5830880e062SHong Zhang if (roworiented) { 5840880e062SHong Zhang stepval = (n - 1) * bs; 5850880e062SHong Zhang } else { 5860880e062SHong Zhang stepval = (m - 1) * bs; 5870880e062SHong Zhang } 5880880e062SHong Zhang for (i = 0; i < m; i++) { 5890880e062SHong Zhang if (im[i] < 0) continue; 5906bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5910880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5920880e062SHong Zhang row = im[i] - rstart; 5930880e062SHong Zhang for (j = 0; j < n; j++) { 594f3f98c53SJed Brown if (im[i] > in[j]) { 595f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 596e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 597f3f98c53SJed Brown } 5980880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5990880e062SHong Zhang if ((roworiented) && (n == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 6010880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 602f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6030880e062SHong Zhang } else { /* Here a copy is required */ 6040880e062SHong Zhang if (roworiented) { 6050880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6060880e062SHong Zhang } else { 6070880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6080880e062SHong Zhang } 6090880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 610ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6110880e062SHong Zhang } 6120880e062SHong Zhang barray -= bs2; 6130880e062SHong Zhang } 6140880e062SHong Zhang 6150880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6160880e062SHong Zhang col = in[j] - cstart; 6179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 618f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 619f7d195e4SLawrence Mitchell continue; 620f7d195e4SLawrence Mitchell } else { 621f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6220880e062SHong Zhang if (mat->was_assembled) { 62348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6240880e062SHong Zhang 6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6260880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6279371c9d4SSatish Balay { 6289371c9d4SSatish Balay PetscInt data; 629eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 63008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6310880e062SHong Zhang } 6320880e062SHong Zhang #else 63308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6340880e062SHong Zhang #endif 6350880e062SHong Zhang #endif 6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 637eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 6380880e062SHong Zhang col = (col - 1) / bs; 6390880e062SHong Zhang #else 6400880e062SHong Zhang col = (baij->colmap[in[j]] - 1) / bs; 6410880e062SHong Zhang #endif 6420880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 6439566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6440880e062SHong Zhang col = in[j]; 6450880e062SHong Zhang } 64626fbe8dcSKarl Rupp } else col = in[j]; 6479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6480880e062SHong Zhang } 6490880e062SHong Zhang } 6500880e062SHong Zhang } else { 6515f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6520880e062SHong Zhang if (!baij->donotstash) { 6530880e062SHong Zhang if (roworiented) { 6549566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6550880e062SHong Zhang } else { 6569566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6570880e062SHong Zhang } 6580880e062SHong Zhang } 6590880e062SHong Zhang } 6600880e062SHong Zhang } 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 665d71ae5a4SJacob Faibussowitsch { 666f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 667d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 668d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay PetscFunctionBegin; 671a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 67254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 67354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 674a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 675a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 676a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 67754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 679a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 680a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 682a30f8f8cSSatish Balay } else { 68348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 685eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 686a30f8f8cSSatish Balay data--; 687a30f8f8cSSatish Balay #else 688a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 689a30f8f8cSSatish Balay #endif 690a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 691a30f8f8cSSatish Balay else { 692a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6939566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay } 697f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 698a30f8f8cSSatish Balay } 6993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay 702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 703d71ae5a4SJacob Faibussowitsch { 704a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 705a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay PetscFunctionBegin; 708a30f8f8cSSatish Balay if (baij->size == 1) { 7099566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 710a30f8f8cSSatish Balay } else { 711a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 7129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7139566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7149371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7159371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7169566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7179371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7189371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7220b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7230b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7240b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 7250b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 726899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 727d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7280b8dc8d2SHong Zhang MatScalar *v; 7290b8dc8d2SHong Zhang 7309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 7319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7320b8dc8d2SHong Zhang /* Amat */ 7339371c9d4SSatish Balay v = amat->a; 7349371c9d4SSatish Balay jj = amat->j; 7350b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7360b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7370b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7380b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7399371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7409371c9d4SSatish Balay jj++; 7410b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7420b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7439371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7449371c9d4SSatish Balay v++; 7450b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7460b8dc8d2SHong Zhang /* non-diagonal block */ 7470b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7480b8dc8d2SHong Zhang } 7490b8dc8d2SHong Zhang } 7500b8dc8d2SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7520b8dc8d2SHong Zhang } 7530b8dc8d2SHong Zhang /* Bmat */ 7549371c9d4SSatish Balay v = bmat->a; 7559371c9d4SSatish Balay jj = bmat->j; 7560b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7570b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7580b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7590b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7609371c9d4SSatish Balay gcol = bs * garray[*jj]; 7619371c9d4SSatish Balay jj++; 7620b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7630b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7649371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7659371c9d4SSatish Balay v++; 7660b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7670b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7680b8dc8d2SHong Zhang } 7690b8dc8d2SHong Zhang } 7700b8dc8d2SHong Zhang } 7719566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7720b8dc8d2SHong Zhang } 7731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7740b8dc8d2SHong Zhang *norm = 0.0; 775d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7760b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7770b8dc8d2SHong Zhang } 7789566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 779f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 780a30f8f8cSSatish Balay } 7813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay 784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 785d71ae5a4SJacob Faibussowitsch { 786a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7871302d50aSBarry Smith PetscInt nstash, reallocs; 788a30f8f8cSSatish Balay 789a30f8f8cSSatish Balay PetscFunctionBegin; 7903ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 791a30f8f8cSSatish Balay 7929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7949566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7959566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7969566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7979566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay 801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 802d71ae5a4SJacob Faibussowitsch { 803a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 804a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 80513f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 806e44c0bd4SBarry Smith PetscInt *row, *col; 807ace3abfcSBarry Smith PetscBool other_disassembled; 80813f74950SBarry Smith PetscMPIInt n; 809ace3abfcSBarry Smith PetscBool r1, r2, r3; 810a30f8f8cSSatish Balay MatScalar *val; 811a30f8f8cSSatish Balay 81291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 813a30f8f8cSSatish Balay PetscFunctionBegin; 8144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 815a30f8f8cSSatish Balay while (1) { 8169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 817a30f8f8cSSatish Balay if (!flg) break; 818a30f8f8cSSatish Balay 819a30f8f8cSSatish Balay for (i = 0; i < n;) { 820a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 82126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 82226fbe8dcSKarl Rupp if (row[j] != rstart) break; 82326fbe8dcSKarl Rupp } 824a30f8f8cSSatish Balay if (j < n) ncols = j - i; 825a30f8f8cSSatish Balay else ncols = n - i; 826a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 828a30f8f8cSSatish Balay i = j; 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay } 8319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 832a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 833a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 834a30f8f8cSSatish Balay restore the original flags */ 835a30f8f8cSSatish Balay r1 = baij->roworiented; 836a30f8f8cSSatish Balay r2 = a->roworiented; 83791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 83826fbe8dcSKarl Rupp 839a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 840a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 84126fbe8dcSKarl Rupp 84291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 843a30f8f8cSSatish Balay while (1) { 8449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 845a30f8f8cSSatish Balay if (!flg) break; 846a30f8f8cSSatish Balay 847a30f8f8cSSatish Balay for (i = 0; i < n;) { 848a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 84926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 85026fbe8dcSKarl Rupp if (row[j] != rstart) break; 85126fbe8dcSKarl Rupp } 852a30f8f8cSSatish Balay if (j < n) ncols = j - i; 853a30f8f8cSSatish Balay else ncols = n - i; 8549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 855a30f8f8cSSatish Balay i = j; 856a30f8f8cSSatish Balay } 857a30f8f8cSSatish Balay } 8589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 85926fbe8dcSKarl Rupp 860a30f8f8cSSatish Balay baij->roworiented = r1; 861a30f8f8cSSatish Balay a->roworiented = r2; 86226fbe8dcSKarl Rupp 86391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 871a30f8f8cSSatish Balay /* 872a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 873a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 874a30f8f8cSSatish Balay */ 875a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 87748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay 8809371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 883a30f8f8cSSatish Balay 8849566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 88526fbe8dcSKarl Rupp 886f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8874f9cfa9eSBarry Smith 8884f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8894f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 890e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 892e56f5c9eSBarry Smith } 8933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8979804daf3SBarry Smith #include <petscdraw.h> 898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 899d71ae5a4SJacob Faibussowitsch { 900a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 901d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 9027da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 903ace3abfcSBarry Smith PetscBool iascii, isdraw; 904b0a32e0cSBarry Smith PetscViewer sviewer; 905f3ef73ceSBarry Smith PetscViewerFormat format; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 9089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 91032077d6dSBarry Smith if (iascii) { 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 912456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 913a30f8f8cSSatish Balay MatInfo info; 9149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9179371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9189371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9199566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9269566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 928fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 931c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay } 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay if (isdraw) { 937b0a32e0cSBarry Smith PetscDraw draw; 938ace3abfcSBarry Smith PetscBool isnull; 9399566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9409566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9413ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 942a30f8f8cSSatish Balay } 943a30f8f8cSSatish Balay 9447da1fb6eSBarry Smith { 945a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 946a30f8f8cSSatish Balay Mat A; 94765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 94865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 949d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 950a30f8f8cSSatish Balay MatScalar *a; 9513e219373SBarry Smith const char *matname; 952a30f8f8cSSatish Balay 953f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 955dd400576SPatrick Sanan if (rank == 0) { 9569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 957a30f8f8cSSatish Balay } else { 9589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 959a30f8f8cSSatish Balay } 9609566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9619566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9629566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay /* copy over the A part */ 96565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9669371c9d4SSatish Balay ai = Aloc->i; 9679371c9d4SSatish Balay aj = Aloc->j; 9689371c9d4SSatish Balay a = Aloc->a; 9699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 970a30f8f8cSSatish Balay 971a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 972e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 974a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 975e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 976a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 97826fbe8dcSKarl Rupp col++; 97926fbe8dcSKarl Rupp a += bs; 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay /* copy over the B part */ 98465d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9859371c9d4SSatish Balay ai = Bloc->i; 9869371c9d4SSatish Balay aj = Bloc->j; 9879371c9d4SSatish Balay a = Bloc->a; 988a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 989e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 99026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 991a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 992a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 993a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 99526fbe8dcSKarl Rupp col++; 99626fbe8dcSKarl Rupp a += bs; 997a30f8f8cSSatish Balay } 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay } 10009566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 1003a30f8f8cSSatish Balay /* 1004a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 1005b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 1006a30f8f8cSSatish Balay */ 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 100823a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1009dd400576SPatrick Sanan if (rank == 0) { 101023a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname)); 10119566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer)); 1012a30f8f8cSSatish Balay } 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10149566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1016a30f8f8cSSatish Balay } 10173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay 1020618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1021618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1022d1654148SHong Zhang 1023d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1024d71ae5a4SJacob Faibussowitsch { 1025ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1026a30f8f8cSSatish Balay 1027a30f8f8cSSatish Balay PetscFunctionBegin; 10289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1032d1654148SHong Zhang if (iascii || isdraw || issocket) { 10339566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10341baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1036a30f8f8cSSatish Balay } 1037a30f8f8cSSatish Balay 1038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1039d71ae5a4SJacob Faibussowitsch { 1040547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1041eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10426de40e93SBarry Smith PetscScalar *from; 10436de40e93SBarry Smith const PetscScalar *x; 1044547795f9SHong Zhang 1045547795f9SHong Zhang PetscFunctionBegin; 1046547795f9SHong Zhang /* diagonal part */ 10479566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1048629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1049629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1050629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1051547795f9SHong Zhang 1052547795f9SHong Zhang /* subdiagonal part */ 10535f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1055547795f9SHong Zhang 1056547795f9SHong Zhang /* copy x into the vec slvec0 */ 10579566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1059547795f9SHong Zhang 10609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1063547795f9SHong Zhang 10649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1066547795f9SHong Zhang /* supperdiagonal part */ 10679566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1069547795f9SHong Zhang } 1070547795f9SHong Zhang 1071d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1072d71ae5a4SJacob Faibussowitsch { 1073a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1074eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1075d9ca1df4SBarry Smith PetscScalar *from; 1076d9ca1df4SBarry Smith const PetscScalar *x; 1077a9d4b620SHong Zhang 1078a9d4b620SHong Zhang PetscFunctionBegin; 1079a9d4b620SHong Zhang /* diagonal part */ 10809566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1081629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1082629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1083629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1084a9d4b620SHong Zhang 1085a9d4b620SHong Zhang /* subdiagonal part */ 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1087fc165ae2SBarry Smith 1088a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10899566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1091a9d4b620SHong Zhang 10929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1095fc165ae2SBarry Smith 10969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1098a9d4b620SHong Zhang /* supperdiagonal part */ 10999566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 11003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1101a9d4b620SHong Zhang } 1102a9d4b620SHong Zhang 1103d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1104d71ae5a4SJacob Faibussowitsch { 1105eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1106eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1107629a200eSBarry Smith PetscScalar *from; 1108eb1ec7c1SStefano Zampini const PetscScalar *x; 1109eb1ec7c1SStefano Zampini 1110eb1ec7c1SStefano Zampini PetscFunctionBegin; 1111eb1ec7c1SStefano Zampini /* diagonal part */ 11129566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1113629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1114629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1115eb1ec7c1SStefano Zampini 1116eb1ec7c1SStefano Zampini /* subdiagonal part */ 11175f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11189566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1119eb1ec7c1SStefano Zampini 1120eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11219566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1125eb1ec7c1SStefano Zampini 11269566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11289566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1129eb1ec7c1SStefano Zampini 1130eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1133eb1ec7c1SStefano Zampini } 1134eb1ec7c1SStefano Zampini 1135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1136d71ae5a4SJacob Faibussowitsch { 1137de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1138d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1139629a200eSBarry Smith PetscScalar *from; 1140d9ca1df4SBarry Smith const PetscScalar *x; 1141a9d4b620SHong Zhang 1142a9d4b620SHong Zhang PetscFunctionBegin; 1143a9d4b620SHong Zhang /* diagonal part */ 11449566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1145629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1146629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1147a9d4b620SHong Zhang 1148a9d4b620SHong Zhang /* subdiagonal part */ 11499566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1150a9d4b620SHong Zhang 1151a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11529566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11539566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11549566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1156a9d4b620SHong Zhang 11579566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11599566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1160a9d4b620SHong Zhang 1161a9d4b620SHong Zhang /* supperdiagonal part */ 11629566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1164a9d4b620SHong Zhang } 1165a9d4b620SHong Zhang 1166a30f8f8cSSatish Balay /* 1167a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1168a30f8f8cSSatish Balay diagonal block 1169a30f8f8cSSatish Balay */ 1170d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1171d71ae5a4SJacob Faibussowitsch { 1172a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1173a30f8f8cSSatish Balay 1174a30f8f8cSSatish Balay PetscFunctionBegin; 117508401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11769566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1178a30f8f8cSSatish Balay } 1179a30f8f8cSSatish Balay 1180d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1181d71ae5a4SJacob Faibussowitsch { 1182a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1183a30f8f8cSSatish Balay 1184a30f8f8cSSatish Balay PetscFunctionBegin; 11859566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11869566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1188a30f8f8cSSatish Balay } 1189a30f8f8cSSatish Balay 1190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1191d71ae5a4SJacob Faibussowitsch { 1192d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1193d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1194d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1195d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1196899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1197d0d4cfc2SHong Zhang 1198a30f8f8cSSatish Balay PetscFunctionBegin; 11995f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1200d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1201d0d4cfc2SHong Zhang 1202d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1203d0d4cfc2SHong Zhang /* 1204d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1205d0d4cfc2SHong Zhang */ 1206d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1207d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1208d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1209d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1210d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 121126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1212d0d4cfc2SHong Zhang } 12139566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1214d0d4cfc2SHong Zhang } 1215d0d4cfc2SHong Zhang 12165f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1217d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1218d0d4cfc2SHong Zhang 12199371c9d4SSatish Balay pvA = &vworkA; 12209371c9d4SSatish Balay pcA = &cworkA; 12219371c9d4SSatish Balay pvB = &vworkB; 12229371c9d4SSatish Balay pcB = &cworkB; 12239371c9d4SSatish Balay if (!v) { 12249371c9d4SSatish Balay pvA = NULL; 12259371c9d4SSatish Balay pvB = NULL; 12269371c9d4SSatish Balay } 12279371c9d4SSatish Balay if (!idx) { 12289371c9d4SSatish Balay pcA = NULL; 12299371c9d4SSatish Balay if (!v) pcB = NULL; 12309371c9d4SSatish Balay } 12319566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12329566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1233d0d4cfc2SHong Zhang nztot = nzA + nzB; 1234d0d4cfc2SHong Zhang 1235d0d4cfc2SHong Zhang cmap = mat->garray; 1236d0d4cfc2SHong Zhang if (v || idx) { 1237d0d4cfc2SHong Zhang if (nztot) { 1238d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1239d0d4cfc2SHong Zhang PetscInt imark = -1; 1240d0d4cfc2SHong Zhang if (v) { 1241d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1242d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1243d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1244d0d4cfc2SHong Zhang else break; 1245d0d4cfc2SHong Zhang } 1246d0d4cfc2SHong Zhang imark = i; 1247d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1248d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1249d0d4cfc2SHong Zhang } 1250d0d4cfc2SHong Zhang if (idx) { 1251d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1252d0d4cfc2SHong Zhang if (imark > -1) { 1253ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1254d0d4cfc2SHong Zhang } else { 1255d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 125626fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1257d0d4cfc2SHong Zhang else break; 1258d0d4cfc2SHong Zhang } 1259d0d4cfc2SHong Zhang imark = i; 1260d0d4cfc2SHong Zhang } 1261d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1262d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1263d0d4cfc2SHong Zhang } 1264d0d4cfc2SHong Zhang } else { 1265f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1266f4259b30SLisandro Dalcin if (v) *v = NULL; 1267d0d4cfc2SHong Zhang } 1268d0d4cfc2SHong Zhang } 1269d0d4cfc2SHong Zhang *nz = nztot; 12709566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12719566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1273a30f8f8cSSatish Balay } 1274a30f8f8cSSatish Balay 1275d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1276d71ae5a4SJacob Faibussowitsch { 1277a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1278a30f8f8cSSatish Balay 1279a30f8f8cSSatish Balay PetscFunctionBegin; 12805f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1281a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1283a30f8f8cSSatish Balay } 1284a30f8f8cSSatish Balay 1285d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1286d71ae5a4SJacob Faibussowitsch { 1287d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1288d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1289d0d4cfc2SHong Zhang 1290d0d4cfc2SHong Zhang PetscFunctionBegin; 1291d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1293d0d4cfc2SHong Zhang } 1294d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1295d71ae5a4SJacob Faibussowitsch { 1296d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1297d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1298d0d4cfc2SHong Zhang 1299d0d4cfc2SHong Zhang PetscFunctionBegin; 1300d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 13013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1302d0d4cfc2SHong Zhang } 1303d0d4cfc2SHong Zhang 1304d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1305d71ae5a4SJacob Faibussowitsch { 13065f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 13075f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13082726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 13092726fb6dSPierre Jolivet 13109566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13119566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13125f80ce2aSJacob Faibussowitsch } 13133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13142726fb6dSPierre Jolivet } 13152726fb6dSPierre Jolivet 1316d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1317d71ae5a4SJacob Faibussowitsch { 131899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131999cafbc1SBarry Smith 132099cafbc1SBarry Smith PetscFunctionBegin; 13219566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13229566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132499cafbc1SBarry Smith } 132599cafbc1SBarry Smith 1326d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1327d71ae5a4SJacob Faibussowitsch { 132899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 132999cafbc1SBarry Smith 133099cafbc1SBarry Smith PetscFunctionBegin; 13319566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13329566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133499cafbc1SBarry Smith } 133599cafbc1SBarry Smith 13367dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 133736032a97SHong Zhang Input: isrow - distributed(parallel), 133836032a97SHong Zhang iscol_local - locally owned (seq) 133936032a97SHong Zhang */ 1340d71ae5a4SJacob Faibussowitsch PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1341d71ae5a4SJacob Faibussowitsch { 13428f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13438f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 134436032a97SHong Zhang 134536032a97SHong Zhang PetscFunctionBegin; 13469566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13479566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 13481098a8e8SHong Zhang if (sz1 > sz2) { 13491098a8e8SHong Zhang *flg = PETSC_FALSE; 13503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13511098a8e8SHong Zhang } 13528f46ffcaSHong Zhang 13539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13558f46ffcaSHong Zhang 13569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13609566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13619566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13628f46ffcaSHong Zhang 13638f46ffcaSHong Zhang nmatch = 0; 13648f46ffcaSHong Zhang k = 0; 13658f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13668f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13678f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13689371c9d4SSatish Balay k = j; 13699371c9d4SSatish Balay nmatch++; 13708f46ffcaSHong Zhang break; 13718f46ffcaSHong Zhang } 13728f46ffcaSHong Zhang } 13738f46ffcaSHong Zhang } 13749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13759566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13769566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13779566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13781098a8e8SHong Zhang if (nmatch < sz1) { 13791098a8e8SHong Zhang *flg = PETSC_FALSE; 13801098a8e8SHong Zhang } else { 13811098a8e8SHong Zhang *flg = PETSC_TRUE; 13821098a8e8SHong Zhang } 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13848f46ffcaSHong Zhang } 138536032a97SHong Zhang 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1387d71ae5a4SJacob Faibussowitsch { 138836032a97SHong Zhang IS iscol_local; 138936032a97SHong Zhang PetscInt csize; 139036032a97SHong Zhang PetscBool isequal; 139136032a97SHong Zhang 139236032a97SHong Zhang PetscFunctionBegin; 13939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 139436032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13965f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 139736032a97SHong Zhang } else { 1398068661f9SToby Isaac PetscBool issorted; 1399068661f9SToby Isaac 14009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 14019566063dSJacob Faibussowitsch PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 14029566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 14035f80ce2aSJacob Faibussowitsch PetscCheck(isequal && issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must equal isrow and be sorted"); 14048f46ffcaSHong Zhang } 14058f46ffcaSHong Zhang 14067dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 14088f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14118f46ffcaSHong Zhang } 14123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14138f46ffcaSHong Zhang } 14148f46ffcaSHong Zhang 1415d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1416d71ae5a4SJacob Faibussowitsch { 1417a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1418a30f8f8cSSatish Balay 1419a30f8f8cSSatish Balay PetscFunctionBegin; 14209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14219566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1423a30f8f8cSSatish Balay } 1424a30f8f8cSSatish Balay 1425d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1426d71ae5a4SJacob Faibussowitsch { 1427a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1428a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14293966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1430a30f8f8cSSatish Balay 1431a30f8f8cSSatish Balay PetscFunctionBegin; 1432d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 143326fbe8dcSKarl Rupp 14349566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 143526fbe8dcSKarl Rupp 14369371c9d4SSatish Balay isend[0] = info->nz_used; 14379371c9d4SSatish Balay isend[1] = info->nz_allocated; 14389371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14399371c9d4SSatish Balay isend[3] = info->memory; 14409371c9d4SSatish Balay isend[4] = info->mallocs; 144126fbe8dcSKarl Rupp 14429566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 144326fbe8dcSKarl Rupp 14449371c9d4SSatish Balay isend[0] += info->nz_used; 14459371c9d4SSatish Balay isend[1] += info->nz_allocated; 14469371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14479371c9d4SSatish Balay isend[3] += info->memory; 14489371c9d4SSatish Balay isend[4] += info->mallocs; 1449a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1450a30f8f8cSSatish Balay info->nz_used = isend[0]; 1451a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1452a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1453a30f8f8cSSatish Balay info->memory = isend[3]; 1454a30f8f8cSSatish Balay info->mallocs = isend[4]; 1455a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14561c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 145726fbe8dcSKarl Rupp 1458a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1459a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1460a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1461a30f8f8cSSatish Balay info->memory = irecv[3]; 1462a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1463a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14641c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 146526fbe8dcSKarl Rupp 1466a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1467a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1468a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1469a30f8f8cSSatish Balay info->memory = irecv[3]; 1470a30f8f8cSSatish Balay info->mallocs = irecv[4]; 147198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1472a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1473a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1474a30f8f8cSSatish Balay info->factor_mallocs = 0; 14753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1476a30f8f8cSSatish Balay } 1477a30f8f8cSSatish Balay 1478d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1479d71ae5a4SJacob Faibussowitsch { 1480a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1481d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1482a30f8f8cSSatish Balay 1483a30f8f8cSSatish Balay PetscFunctionBegin; 1484e98b92d7SKris Buschelman switch (op) { 1485512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1486e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 148728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1488a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1489c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1490e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 149143674050SBarry Smith MatCheckPreallocated(A, 1); 14929566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14939566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1494e98b92d7SKris Buschelman break; 1495e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 149643674050SBarry Smith MatCheckPreallocated(A, 1); 14974e0d8c25SBarry Smith a->roworiented = flg; 149826fbe8dcSKarl Rupp 14999566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15009566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1501e98b92d7SKris Buschelman break; 15028c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1503d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1504d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1505d71ae5a4SJacob Faibussowitsch break; 1506d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1507d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1508d71ae5a4SJacob Faibussowitsch break; 1509d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1510d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1511d71ae5a4SJacob Faibussowitsch break; 1512d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1513d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1514d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15150f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1516eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1517547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1518eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1519eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1520eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1521b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1522eb1ec7c1SStefano Zampini } 15230f2140c7SStefano Zampini #endif 1524eeffb40dSHong Zhang break; 1525ffa07934SHong Zhang case MAT_SPD: 1526d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1527d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1528d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1529eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1530eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1531eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1532eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1533eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1534eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1535eb1ec7c1SStefano Zampini } 1536eb1ec7c1SStefano Zampini #endif 1537eeffb40dSHong Zhang break; 153877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 153943674050SBarry Smith MatCheckPreallocated(A, 1); 15409566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1541eeffb40dSHong Zhang break; 15429a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1543b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15445f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15459566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 154677e54ba9SKris Buschelman break; 1547d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1548d71ae5a4SJacob Faibussowitsch break; 1549d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1550d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1551d71ae5a4SJacob Faibussowitsch break; 1552d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1553d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1554d71ae5a4SJacob Faibussowitsch break; 1555d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1556d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1557d71ae5a4SJacob Faibussowitsch break; 1558d71ae5a4SJacob Faibussowitsch default: 1559d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1560a30f8f8cSSatish Balay } 15613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1562a30f8f8cSSatish Balay } 1563a30f8f8cSSatish Balay 1564d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1565d71ae5a4SJacob Faibussowitsch { 1566a30f8f8cSSatish Balay PetscFunctionBegin; 15677fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1568cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15699566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1570cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15719566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1572fc4dec0aSBarry Smith } 15733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1574a30f8f8cSSatish Balay } 1575a30f8f8cSSatish Balay 1576d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1577d71ae5a4SJacob Faibussowitsch { 1578a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1579a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15805e90f9d9SHong Zhang PetscInt nv, m, n; 1581ace3abfcSBarry Smith PetscBool flg; 1582a30f8f8cSSatish Balay 1583a30f8f8cSSatish Balay PetscFunctionBegin; 1584a30f8f8cSSatish Balay if (ll != rr) { 15859566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 15865f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1587a30f8f8cSSatish Balay } 15883ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1589b3bf805bSHong Zhang 15909566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15915f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1592b3bf805bSHong Zhang 15939566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 15945f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 15955e90f9d9SHong Zhang 15969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 15975e90f9d9SHong Zhang 15985e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1599dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16005e90f9d9SHong Zhang 16015e90f9d9SHong Zhang /* scale the diagonal part */ 1602dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1603a30f8f8cSSatish Balay 16045e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16059566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1606dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1608a30f8f8cSSatish Balay } 1609a30f8f8cSSatish Balay 1610d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1611d71ae5a4SJacob Faibussowitsch { 1612f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1613a30f8f8cSSatish Balay 1614a30f8f8cSSatish Balay PetscFunctionBegin; 16159566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1617a30f8f8cSSatish Balay } 1618a30f8f8cSSatish Balay 16196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1620a30f8f8cSSatish Balay 1621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1622d71ae5a4SJacob Faibussowitsch { 1623a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1624a30f8f8cSSatish Balay Mat a, b, c, d; 1625ace3abfcSBarry Smith PetscBool flg; 1626a30f8f8cSSatish Balay 1627a30f8f8cSSatish Balay PetscFunctionBegin; 16289371c9d4SSatish Balay a = matA->A; 16299371c9d4SSatish Balay b = matA->B; 16309371c9d4SSatish Balay c = matB->A; 16319371c9d4SSatish Balay d = matB->B; 1632a30f8f8cSSatish Balay 16339566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 163448a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16351c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1637a30f8f8cSSatish Balay } 1638a30f8f8cSSatish Balay 1639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1640d71ae5a4SJacob Faibussowitsch { 16414c7a3774SStefano Zampini PetscBool isbaij; 16423c896bc6SHong Zhang 16433c896bc6SHong Zhang PetscFunctionBegin; 16449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16455f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16463c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16473c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16489566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16499566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16509566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16513c896bc6SHong Zhang } else { 16524c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16534c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16544c7a3774SStefano Zampini 16559566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16569566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16573c896bc6SHong Zhang } 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16603c896bc6SHong Zhang } 16613c896bc6SHong Zhang 1662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1663d71ae5a4SJacob Faibussowitsch { 16644fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16654fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16664fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16674fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16684fe895cdSHong Zhang 16694fe895cdSHong Zhang PetscFunctionBegin; 16704fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16714fe895cdSHong Zhang PetscScalar alpha = a; 16724fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16734fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16749566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1675792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16764fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16774fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16789566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1679792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1681ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16829566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16839566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16849566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16854fe895cdSHong Zhang } else { 16864de5dceeSHong Zhang Mat B; 16874de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16885f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16899566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16909566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 16939566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 16949566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 16959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 16969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 16979566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 16989566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 16999566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17009566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17019566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17029566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17039566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17049566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17059566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17069566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17074fe895cdSHong Zhang } 17083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17094fe895cdSHong Zhang } 17104fe895cdSHong Zhang 1711d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1712d71ae5a4SJacob Faibussowitsch { 17131302d50aSBarry Smith PetscInt i; 1714afebec48SHong Zhang PetscBool flg; 1715a5e6ed63SBarry Smith 17166849ba73SBarry Smith PetscFunctionBegin; 17179566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1718a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17199566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 172048a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17214dcd73b1SHong Zhang } 17223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1723a5e6ed63SBarry Smith } 1724a5e6ed63SBarry Smith 1725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1726d71ae5a4SJacob Faibussowitsch { 17277d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17286f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17297d68702bSBarry Smith 17307d68702bSBarry Smith PetscFunctionBegin; 17316f33a894SBarry Smith if (!Y->preallocated) { 17329566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17336f33a894SBarry Smith } else if (!aij->nz) { 1734b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17359566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1736b83222d8SBarry Smith aij->nonew = nonew; 17377d68702bSBarry Smith } 17389566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17407d68702bSBarry Smith } 17417d68702bSBarry Smith 1742d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1743d71ae5a4SJacob Faibussowitsch { 17443b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17453b49f96aSBarry Smith 17463b49f96aSBarry Smith PetscFunctionBegin; 17475f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17489566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17493b49f96aSBarry Smith if (d) { 17503b49f96aSBarry Smith PetscInt rstart; 17519566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17523b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17533b49f96aSBarry Smith } 17543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17553b49f96aSBarry Smith } 17563b49f96aSBarry Smith 1757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1758d71ae5a4SJacob Faibussowitsch { 1759a5b7ff6bSBarry Smith PetscFunctionBegin; 1760a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1762a5b7ff6bSBarry Smith } 17633b49f96aSBarry Smith 176417ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 176517ea310bSPierre Jolivet { 176617ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 176717ea310bSPierre Jolivet 176817ea310bSPierre Jolivet PetscFunctionBegin; 176917ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 177017ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 177117ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 177217ea310bSPierre Jolivet } 177317ea310bSPierre Jolivet 17743964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1775a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1776a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1777a9d4b620SHong Zhang MatMult_MPISBAIJ, 177897304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1779431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1780431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1781f4259b30SLisandro Dalcin NULL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin NULL, 1784f4259b30SLisandro Dalcin /* 10*/ NULL, 1785f4259b30SLisandro Dalcin NULL, 1786f4259b30SLisandro Dalcin NULL, 178741f059aeSBarry Smith MatSOR_MPISBAIJ, 1788a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 178997304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1790a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1791a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1792a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1793a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 179497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1795a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1796a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1797a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1798f4259b30SLisandro Dalcin /* 24*/ NULL, 1799f4259b30SLisandro Dalcin NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 180326cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1804f4259b30SLisandro Dalcin NULL, 1805f4259b30SLisandro Dalcin NULL, 1806a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1807f4259b30SLisandro Dalcin NULL, 1808d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18147dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1815d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1816a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18173c896bc6SHong Zhang MatCopy_MPISBAIJ, 1818f4259b30SLisandro Dalcin /* 44*/ NULL, 1819a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18207d68702bSBarry Smith MatShift_MPISBAIJ, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin /* 49*/ NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin /* 54*/ NULL, 1829f4259b30SLisandro Dalcin NULL, 1830a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1831f4259b30SLisandro Dalcin NULL, 1832a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18337dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin /* 64*/ NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1844f4259b30SLisandro Dalcin NULL, 184528d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin /* 74*/ NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin /* 79*/ NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 18575bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1858f4259b30SLisandro Dalcin /* 84*/ NULL, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin /* 89*/ NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin /* 94*/ NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin /* 99*/ NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 18762726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin /*104*/ NULL, 187999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1880d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1881d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 188295936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1883f4259b30SLisandro Dalcin /*109*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 18873b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1888f4259b30SLisandro Dalcin /*114*/ NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin /*119*/ NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin /*124*/ NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin /*129*/ NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin /*134*/ NULL, 1909f4259b30SLisandro Dalcin NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 1912f4259b30SLisandro Dalcin NULL, 191346533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1914f4259b30SLisandro Dalcin NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 1917f4259b30SLisandro Dalcin NULL, 1918d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1919d70f29a3SPierre Jolivet NULL, 1920d70f29a3SPierre Jolivet NULL, 192199a7f59eSMark Adams NULL, 192299a7f59eSMark Adams NULL, 19237fb60732SBarry Smith NULL, 1924dec0b466SHong Zhang /*150*/ NULL, 192517ea310bSPierre Jolivet MatEliminateZeros_MPISBAIJ}; 1926a30f8f8cSSatish Balay 1927d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1928d71ae5a4SJacob Faibussowitsch { 1929476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1930535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19315d2a9ed1SStefano Zampini PetscMPIInt size; 1932a23d5eceSKris Buschelman 1933a23d5eceSKris Buschelman PetscFunctionBegin; 1934ad79cf63SBarry Smith if (B->hash_active) { 1935aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1936ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1937ad79cf63SBarry Smith } 1938ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19399566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19429566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19435f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19445f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1945899cda47SBarry Smith 1946d0f46423SBarry Smith mbs = B->rmap->n / bs; 1947d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19485f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1949a23d5eceSKris Buschelman 1950d0f46423SBarry Smith B->rmap->bs = bs; 1951a23d5eceSKris Buschelman b->bs2 = bs * bs; 1952a23d5eceSKris Buschelman b->mbs = mbs; 1953a23d5eceSKris Buschelman b->Mbs = Mbs; 1954de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1955de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1956a23d5eceSKris Buschelman 1957ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1958d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1959d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1960a23d5eceSKris Buschelman 1961d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1962d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1963a23d5eceSKris Buschelman 1964cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1965eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1966cb7b82ddSBarry Smith #else 19679566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1968cb7b82ddSBarry Smith #endif 19699566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19719566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19779566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1978cb7b82ddSBarry Smith 19799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 19809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19819566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19839566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 1984cb7b82ddSBarry Smith 1985ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 19869566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19889566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 1989a23d5eceSKris Buschelman 19909566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19919566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 199226fbe8dcSKarl Rupp 1993526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1994cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1995cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 19963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1997a23d5eceSKris Buschelman } 1998a23d5eceSKris Buschelman 1999d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2000d71ae5a4SJacob Faibussowitsch { 200102106b30SBarry Smith PetscInt m, rstart, cend; 2002f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2003f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2004f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2005bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20063bd0feecSPierre Jolivet PetscBool nooffprocentries; 2007dfb205c3SBarry Smith 2008dfb205c3SBarry Smith PetscFunctionBegin; 20095f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20149566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2015dfb205c3SBarry Smith m = B->rmap->n / bs; 2016dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2017dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2018dfb205c3SBarry Smith 20195f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2021dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2022dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20235f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20240cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2025dfb205c3SBarry Smith JJ = jj + ii[i]; 20260cd7f59aSBarry Smith bd = 0; 2027dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20280cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2029dfb205c3SBarry Smith JJ++; 20300cd7f59aSBarry Smith bd++; 2031dfb205c3SBarry Smith } 2032dfb205c3SBarry Smith d = 0; 2033dfb205c3SBarry Smith for (; j < nz; j++) { 2034dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2035dfb205c3SBarry Smith d++; 2036dfb205c3SBarry Smith } 2037dfb205c3SBarry Smith d_nnz[i] = d; 20380cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20390cd7f59aSBarry Smith nz = nz - bd; 20400cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2041dfb205c3SBarry Smith } 20429566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20439566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20449566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2045dfb205c3SBarry Smith 2046dfb205c3SBarry Smith values = (PetscScalar *)V; 204748a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2048dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2049dfb205c3SBarry Smith PetscInt row = i + rstart; 2050dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2051dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2052bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2053dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2055bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2056bb80cfbbSStefano Zampini PetscInt j; 20570cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20580cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20599566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20600cd7f59aSBarry Smith } 20610cd7f59aSBarry Smith } 2062dfb205c3SBarry Smith } 2063dfb205c3SBarry Smith 20649566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20653bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20663bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 20689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 20693bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20703bd0feecSPierre Jolivet 20719566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 20723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2073dfb205c3SBarry Smith } 2074dfb205c3SBarry Smith 20750bad9183SKris Buschelman /*MC 2076fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2077828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2078828413b8SBarry Smith the matrix is stored. 2079828413b8SBarry Smith 2080828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 208111a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 20820bad9183SKris Buschelman 20832ef1f0ffSBarry Smith Options Database Key: 208411a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 20850bad9183SKris Buschelman 20862ef1f0ffSBarry Smith Level: beginner 20872ef1f0ffSBarry Smith 208811a5261eSBarry Smith Note: 2089476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2090476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2091476417e5SBarry Smith 20921cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20930bad9183SKris Buschelman M*/ 20940bad9183SKris Buschelman 2095d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2096d71ae5a4SJacob Faibussowitsch { 2097b5df2d14SHong Zhang Mat_MPISBAIJ *b; 209894ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2099b5df2d14SHong Zhang 2100b5df2d14SHong Zhang PetscFunctionBegin; 21014dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2102b0a32e0cSBarry Smith B->data = (void *)b; 2103aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2104b5df2d14SHong Zhang 2105b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2106b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2107b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2108b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 210926fbe8dcSKarl Rupp 21109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2112b5df2d14SHong Zhang 2113b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2115b5df2d14SHong Zhang 2116b5df2d14SHong Zhang /* build cache for off array entries formed */ 21179566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 211826fbe8dcSKarl Rupp 2119b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21200298fd71SBarry Smith b->colmap = NULL; 21210298fd71SBarry Smith b->garray = NULL; 2122b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2123b5df2d14SHong Zhang 2124b5df2d14SHong Zhang /* stuff used in block assembly */ 2125f4259b30SLisandro Dalcin b->barray = NULL; 2126b5df2d14SHong Zhang 2127b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2128f4259b30SLisandro Dalcin b->lvec = NULL; 2129f4259b30SLisandro Dalcin b->Mvctx = NULL; 2130f4259b30SLisandro Dalcin b->slvec0 = NULL; 2131f4259b30SLisandro Dalcin b->slvec0b = NULL; 2132f4259b30SLisandro Dalcin b->slvec1 = NULL; 2133f4259b30SLisandro Dalcin b->slvec1a = NULL; 2134f4259b30SLisandro Dalcin b->slvec1b = NULL; 2135f4259b30SLisandro Dalcin b->sMvctx = NULL; 2136b5df2d14SHong Zhang 2137b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2138f4259b30SLisandro Dalcin b->rowindices = NULL; 2139f4259b30SLisandro Dalcin b->rowvalues = NULL; 2140b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2141b5df2d14SHong Zhang 2142b5df2d14SHong Zhang /* hash table stuff */ 2143f4259b30SLisandro Dalcin b->ht = NULL; 2144f4259b30SLisandro Dalcin b->hd = NULL; 2145b5df2d14SHong Zhang b->ht_size = 0; 2146b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2147b5df2d14SHong Zhang b->ht_fact = 0; 2148b5df2d14SHong Zhang b->ht_total_ct = 0; 2149b5df2d14SHong Zhang b->ht_insert_ct = 0; 2150b5df2d14SHong Zhang 21517dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21527a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21537a868f3eSHong Zhang 2154f4259b30SLisandro Dalcin b->in_loc = NULL; 2155f4259b30SLisandro Dalcin b->v_loc = NULL; 215659ffdab8SBarry Smith b->n_loc = 0; 215794ae4db5SBarry Smith 21589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21626214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 21646214f412SHong Zhang #endif 2165d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 21669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2167d24d4204SJose E. Roman #endif 21689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 21699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2170aa5a9175SDahai Guo 2171b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2172b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2173b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2174b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2175eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2176b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2177eb1ec7c1SStefano Zampini #else 2178b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2179eb1ec7c1SStefano Zampini #endif 218013647f61SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2182d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21839566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 218494ae4db5SBarry Smith if (flg) { 218594ae4db5SBarry Smith PetscReal fact = 1.39; 21869566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21879566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 218894ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21899566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21909566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 219194ae4db5SBarry Smith } 2192d0609cedSBarry Smith PetscOptionsEnd(); 21933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2194b5df2d14SHong Zhang } 2195b5df2d14SHong Zhang 21962920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2197209238afSKris Buschelman /*MC 2198002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2199209238afSKris Buschelman 220011a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 220111a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2202209238afSKris Buschelman 220311a5261eSBarry Smith Options Database Key: 2204c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2205209238afSKris Buschelman 2206209238afSKris Buschelman Level: beginner 2207209238afSKris Buschelman 22081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2209209238afSKris Buschelman M*/ 2210209238afSKris Buschelman 2211b5df2d14SHong Zhang /*@C 2212b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2213b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2214b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2215b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2216b5df2d14SHong Zhang 2217c3339decSBarry Smith Collective 2218b5df2d14SHong Zhang 2219b5df2d14SHong Zhang Input Parameters: 22201c4f3114SJed Brown + B - the matrix 2221bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2222bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2223b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2224b5df2d14SHong Zhang submatrix (same for all local rows) 2225b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22266d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22272ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 222895742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2229b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2230b5df2d14SHong Zhang submatrix (same for all local rows). 2231b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2232c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22332ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2234b5df2d14SHong Zhang 2235b5df2d14SHong Zhang Options Database Keys: 2236a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2237b5df2d14SHong Zhang block calculations (much slower) 2238a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2239b5df2d14SHong Zhang 22402ef1f0ffSBarry Smith Level: intermediate 22412ef1f0ffSBarry Smith 2242b5df2d14SHong Zhang Notes: 2243b5df2d14SHong Zhang 224411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2245b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2246b5df2d14SHong Zhang 224749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 224849a6f317SBarry Smith 2249b5df2d14SHong Zhang Storage Information: 2250b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2251b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2252b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2253b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2254b5df2d14SHong Zhang 2255b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22562ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22572ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2258b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22592ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2260b5df2d14SHong Zhang 226111a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2262aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22632ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2264aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2265aa95bbe8SBarry Smith 2266b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2267b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2268b5df2d14SHong Zhang 2269b5df2d14SHong Zhang .vb 2270b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2271a4b1a0f6SJed Brown -------------------------- 2272c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2273c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2274c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2275a4b1a0f6SJed Brown -------------------------- 2276b5df2d14SHong Zhang .ve 2277b5df2d14SHong Zhang 2278b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2279b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22806d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 228111a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2282b5df2d14SHong Zhang 22832ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 22846d10fdaeSSatish Balay plus the diagonal part of the d matrix, 22852ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2286c2fc9fa9SBarry Smith 2287b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 22882ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2289b5df2d14SHong Zhang 22901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2291b5df2d14SHong Zhang @*/ 2292d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2293d71ae5a4SJacob Faibussowitsch { 2294b5df2d14SHong Zhang PetscFunctionBegin; 22956ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 22966ba663aaSJed Brown PetscValidType(B, 1); 22976ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2298cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 22993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2300b5df2d14SHong Zhang } 2301b5df2d14SHong Zhang 23022920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2303a30f8f8cSSatish Balay /*@C 230411a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2305a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2306a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 230720f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2308a30f8f8cSSatish Balay 2309d083f849SBarry Smith Collective 2310a30f8f8cSSatish Balay 2311a30f8f8cSSatish Balay Input Parameters: 2312a30f8f8cSSatish Balay + comm - MPI communicator 231311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 231420f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 231520f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2316a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2317a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 231820f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2319a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2320a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 232120f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 232220f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2323a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2324a30f8f8cSSatish Balay submatrix (same for all local rows) 2325a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23266d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23272ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 232895742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 232995742e49SBarry Smith set its value even if it is zero. 2330a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2331a30f8f8cSSatish Balay submatrix (same for all local rows). 2332a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2333a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23342ef1f0ffSBarry Smith each block row) or `NULL`. 2335a30f8f8cSSatish Balay 2336a30f8f8cSSatish Balay Output Parameter: 2337a30f8f8cSSatish Balay . A - the matrix 2338a30f8f8cSSatish Balay 2339a30f8f8cSSatish Balay Options Database Keys: 2340a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2341a30f8f8cSSatish Balay block calculations (much slower) 2342a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2343a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2344a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2345a30f8f8cSSatish Balay 23462ef1f0ffSBarry Smith Level: intermediate 23472ef1f0ffSBarry Smith 23482ef1f0ffSBarry Smith Notes: 2349*77433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2350f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 235111a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2352175b88e8SBarry Smith 2353d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23546d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2355d1be2dadSMatthew Knepley 2356a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2357a30f8f8cSSatish Balay (possibly both). 2358a30f8f8cSSatish Balay 235911a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2360a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2361a30f8f8cSSatish Balay 236249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 236349a6f317SBarry Smith 2364a30f8f8cSSatish Balay Storage Information: 2365a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2366a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2367a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2368a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2369a30f8f8cSSatish Balay 2370a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 23712ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 23722ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2373a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 23742ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2375a30f8f8cSSatish Balay 2376a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2377a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2378a30f8f8cSSatish Balay 2379a30f8f8cSSatish Balay .vb 2380a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2381a4b1a0f6SJed Brown -------------------------- 2382c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2383c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2384c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2385a4b1a0f6SJed Brown -------------------------- 2386a30f8f8cSSatish Balay .ve 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2389a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23906d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23912ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2392a30f8f8cSSatish Balay 23932ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23946d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23952ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2396a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 23972ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2398a30f8f8cSSatish Balay 23991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2400a30f8f8cSSatish Balay @*/ 2401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2402d71ae5a4SJacob Faibussowitsch { 24031302d50aSBarry Smith PetscMPIInt size; 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay PetscFunctionBegin; 24069566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2409273d9f13SBarry Smith if (size > 1) { 24109566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24119566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2412273d9f13SBarry Smith } else { 24139566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24149566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2415273d9f13SBarry Smith } 24163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2417a30f8f8cSSatish Balay } 2418a30f8f8cSSatish Balay 2419d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2420d71ae5a4SJacob Faibussowitsch { 2421a30f8f8cSSatish Balay Mat mat; 2422a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2423d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2424387bc808SHong Zhang PetscScalar *array; 2425a30f8f8cSSatish Balay 2426a30f8f8cSSatish Balay PetscFunctionBegin; 2427f4259b30SLisandro Dalcin *newmat = NULL; 242826fbe8dcSKarl Rupp 24299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24319566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24329566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24339566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2434e1b6402fSHong Zhang 2435d5f3da31SBarry Smith mat->factortype = matin->factortype; 2436273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 243782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24387fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24397fff6886SHong Zhang 2440b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2441a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2442a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2443a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2444a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2445a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2446a30f8f8cSSatish Balay 2447a30f8f8cSSatish Balay a->size = oldmat->size; 2448a30f8f8cSSatish Balay a->rank = oldmat->rank; 2449a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2450a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2451f4259b30SLisandro Dalcin a->rowindices = NULL; 2452f4259b30SLisandro Dalcin a->rowvalues = NULL; 2453a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2454f4259b30SLisandro Dalcin a->barray = NULL; 2455899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2456899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2457899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2458899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2459a30f8f8cSSatish Balay 2460a30f8f8cSSatish Balay /* hash table stuff */ 2461f4259b30SLisandro Dalcin a->ht = NULL; 2462f4259b30SLisandro Dalcin a->hd = NULL; 2463a30f8f8cSSatish Balay a->ht_size = 0; 2464a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2465a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2466a30f8f8cSSatish Balay a->ht_total_ct = 0; 2467a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2468a30f8f8cSSatish Balay 24699566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2470a30f8f8cSSatish Balay if (oldmat->colmap) { 2471a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2472eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2473a30f8f8cSSatish Balay #else 24749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 24759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2476a30f8f8cSSatish Balay #endif 2477f4259b30SLisandro Dalcin } else a->colmap = NULL; 2478387bc808SHong Zhang 2479a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 24809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2482f4259b30SLisandro Dalcin } else a->garray = NULL; 2483a30f8f8cSSatish Balay 24849566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24859566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 24869566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 248782327fa8SHong Zhang 24889566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 24899566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2490387bc808SHong Zhang 24919566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 24929566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 24939566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 24949566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 24959566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 24969566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 24979566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 24989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2499387bc808SHong Zhang 2500387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25019566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2502387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 250382327fa8SHong Zhang 25049566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25059566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 25069566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2507a30f8f8cSSatish Balay *newmat = mat; 25083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2509a30f8f8cSSatish Balay } 2510a30f8f8cSSatish Balay 2511618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2512618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2513618cc2edSLisandro Dalcin 2514d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2515d71ae5a4SJacob Faibussowitsch { 25167f489da9SVaclav Hapla PetscBool isbinary; 251795936485SShri Abhyankar 251895936485SShri Abhyankar PetscFunctionBegin; 25199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25205f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25219566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 252395936485SShri Abhyankar } 252495936485SShri Abhyankar 2525d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2526d71ae5a4SJacob Faibussowitsch { 252724d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2528f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(a->B)->data; 2529ca54ac64SHong Zhang PetscReal atmp; 253087828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25311302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25321302d50aSBarry Smith PetscMPIInt rank, size; 25331302d50aSBarry Smith PetscInt *rowners_bs, dest, count, source; 253487828ca2SBarry Smith PetscScalar *va; 25358a1c53f2SBarry Smith MatScalar *ba; 2536f4c0e9e4SHong Zhang MPI_Status stat; 253724d5174aSHong Zhang 253824d5174aSHong Zhang PetscFunctionBegin; 25395f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25409566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25419566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2542f4c0e9e4SHong Zhang 25439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2545f4c0e9e4SHong Zhang 2546d0f46423SBarry Smith bs = A->rmap->bs; 2547f4c0e9e4SHong Zhang mbs = a->mbs; 2548f4c0e9e4SHong Zhang Mbs = a->Mbs; 2549f4c0e9e4SHong Zhang ba = b->a; 2550f4c0e9e4SHong Zhang bi = b->i; 2551f4c0e9e4SHong Zhang bj = b->j; 2552f4c0e9e4SHong Zhang 2553f4c0e9e4SHong Zhang /* find ownerships */ 2554d0f46423SBarry Smith rowners_bs = A->rmap->range; 2555f4c0e9e4SHong Zhang 2556f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25579566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2558f4c0e9e4SHong Zhang 2559f4c0e9e4SHong Zhang /* row_max for B */ 2560b8475685SHong Zhang if (rank != size - 1) { 2561f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25629371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25639371c9d4SSatish Balay bi++; 2564f4c0e9e4SHong Zhang brow = bs * i; 2565f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2566f4c0e9e4SHong Zhang bcol = bs * (*bj); 2567f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2568ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 256904d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2570f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 25719371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 25729371c9d4SSatish Balay ba++; 2573ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2574ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2575f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2576f4c0e9e4SHong Zhang } 2577f4c0e9e4SHong Zhang } 2578f4c0e9e4SHong Zhang bj++; 2579f4c0e9e4SHong Zhang } 2580f4c0e9e4SHong Zhang } 2581f4c0e9e4SHong Zhang 2582f4c0e9e4SHong Zhang /* send values to its owners */ 2583f4c0e9e4SHong Zhang for (dest = rank + 1; dest < size; dest++) { 2584f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2585ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 25869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2587ca54ac64SHong Zhang } 2588f4c0e9e4SHong Zhang } 2589f4c0e9e4SHong Zhang 2590f4c0e9e4SHong Zhang /* receive values */ 2591ca54ac64SHong Zhang if (rank) { 2592f4c0e9e4SHong Zhang rvalues = work; 2593ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2594f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 25959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2596f4c0e9e4SHong Zhang /* process values */ 2597f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2598ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2599f4c0e9e4SHong Zhang } 2600f4c0e9e4SHong Zhang } 2601ca54ac64SHong Zhang } 2602f4c0e9e4SHong Zhang 26039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26049566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260624d5174aSHong Zhang } 26072798e883SHong Zhang 2608d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2609d71ae5a4SJacob Faibussowitsch { 26102798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2611d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26123649974fSBarry Smith PetscScalar *x, *ptr, *from; 2613ffe4fb16SHong Zhang Vec bb1; 26143649974fSBarry Smith const PetscScalar *b; 2615ffe4fb16SHong Zhang 2616ffe4fb16SHong Zhang PetscFunctionBegin; 26175f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26185f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2619ffe4fb16SHong Zhang 2620a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26219566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2623a2b30743SBarry Smith } 2624a2b30743SBarry Smith 2625ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2626ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26279566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2628ffe4fb16SHong Zhang its--; 2629ffe4fb16SHong Zhang } 2630ffe4fb16SHong Zhang 26319566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2632ffe4fb16SHong Zhang while (its--) { 2633ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26349566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2635ffe4fb16SHong Zhang 2636ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26379566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26389566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26399566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2641ffe4fb16SHong Zhang 26429566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2643ffe4fb16SHong Zhang 2644ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26459566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26469566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26479566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2649ffe4fb16SHong Zhang 2650ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2651629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2652629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2653ffe4fb16SHong Zhang 26549566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26579566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2658ffe4fb16SHong Zhang 2659ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26609566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2661ffe4fb16SHong Zhang 2662ffe4fb16SHong Zhang /* local diagonal sweep */ 26639566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2664ffe4fb16SHong Zhang } 26659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2666fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2668fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26699566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2670fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2671fa22f6d0SBarry Smith Vec xx1; 2672ace3abfcSBarry Smith PetscBool hasop; 267320f1ed55SBarry Smith const PetscScalar *diag; 2674887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 267520f1ed55SBarry Smith PetscInt i, n; 2676fa22f6d0SBarry Smith 2677fa22f6d0SBarry Smith if (!mat->xx1) { 26789566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 26799566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2680fa22f6d0SBarry Smith } 2681fa22f6d0SBarry Smith xx1 = mat->xx1; 2682fa22f6d0SBarry Smith bb1 = mat->bb1; 2683fa22f6d0SBarry Smith 26849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2685fa22f6d0SBarry Smith 2686fa22f6d0SBarry Smith if (!mat->diag) { 2687effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26889566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 26899566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2690fa22f6d0SBarry Smith } 26919566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2692fa22f6d0SBarry Smith 2693fa22f6d0SBarry Smith if (hasop) { 26949566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 26959566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 269620f1ed55SBarry Smith } else { 269720f1ed55SBarry Smith /* 269820f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 26999566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27009566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 270120f1ed55SBarry Smith */ 27029566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27059566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27069566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2707887ee2caSBarry Smith if (omega == 1.0) { 270826fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27099566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2710887ee2caSBarry Smith } else { 271126fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27129566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2713887ee2caSBarry Smith } 27149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27179566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 271820f1ed55SBarry Smith } 2719fa22f6d0SBarry Smith 2720fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2721629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2722629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27239566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27249566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27259566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27269566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27289566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27299566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27319566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2732fa22f6d0SBarry Smith 2733fa22f6d0SBarry Smith /* local sweep */ 27349566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27359566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2736f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2738ffe4fb16SHong Zhang } 2739ffe4fb16SHong Zhang 2740dfb205c3SBarry Smith /*@ 274111a5261eSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard 2742dfb205c3SBarry Smith CSR format the local rows. 2743dfb205c3SBarry Smith 2744d083f849SBarry Smith Collective 2745dfb205c3SBarry Smith 2746dfb205c3SBarry Smith Input Parameters: 2747dfb205c3SBarry Smith + comm - MPI communicator 2748dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 274911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2750dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 275111a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 27522ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27532ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27542ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2755483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2756dfb205c3SBarry Smith . j - column indices 2757dfb205c3SBarry Smith - a - matrix values 2758dfb205c3SBarry Smith 2759dfb205c3SBarry Smith Output Parameter: 2760dfb205c3SBarry Smith . mat - the matrix 2761dfb205c3SBarry Smith 2762dfb205c3SBarry Smith Level: intermediate 2763dfb205c3SBarry Smith 2764dfb205c3SBarry Smith Notes: 27652ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 27662ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 27672ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2768dfb205c3SBarry Smith 27692ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2770dfb205c3SBarry Smith 27711cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2772db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 2773dfb205c3SBarry Smith @*/ 2774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2775d71ae5a4SJacob Faibussowitsch { 2776dfb205c3SBarry Smith PetscFunctionBegin; 27775f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 27785f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27799566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 27809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 27819566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 27829566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 27833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2784dfb205c3SBarry Smith } 2785dfb205c3SBarry Smith 2786dfb205c3SBarry Smith /*@C 278711a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2788dfb205c3SBarry Smith 2789d083f849SBarry Smith Collective 2790dfb205c3SBarry Smith 2791dfb205c3SBarry Smith Input Parameters: 27921c4f3114SJed Brown + B - the matrix 2793dfb205c3SBarry Smith . bs - the block size 27942ef1f0ffSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2795dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2796dfb205c3SBarry Smith - v - optional values in the matrix 2797dfb205c3SBarry Smith 2798664954b6SBarry Smith Level: advanced 2799664954b6SBarry Smith 2800664954b6SBarry Smith Notes: 28010cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28020cd7f59aSBarry Smith and usually the numerical values as well 28030cd7f59aSBarry Smith 280450c5228eSBarry Smith Any entries below the diagonal are ignored 2805dfb205c3SBarry Smith 28061cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ` 2807dfb205c3SBarry Smith @*/ 2808d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2809d71ae5a4SJacob Faibussowitsch { 2810dfb205c3SBarry Smith PetscFunctionBegin; 2811cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2813dfb205c3SBarry Smith } 2814dfb205c3SBarry Smith 2815d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2816d71ae5a4SJacob Faibussowitsch { 281710c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 281810c56fdeSHong Zhang PetscInt *indx; 281910c56fdeSHong Zhang PetscScalar *values; 2820dfb205c3SBarry Smith 28214dcd73b1SHong Zhang PetscFunctionBegin; 28229566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 282310c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 282410c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2825de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 282610c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2827de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28284dcd73b1SHong Zhang 28299566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28309371c9d4SSatish Balay mbs = m / bs; 28319371c9d4SSatish Balay Nbs = N / cbs; 283248a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2833da91a574SPierre Jolivet nbs = n / cbs; 28344dcd73b1SHong Zhang 28359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2836d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2837de25e9cbSPierre Jolivet 28389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2840de25e9cbSPierre Jolivet if (rank == size - 1) { 2841de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28425f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2843de25e9cbSPierre Jolivet } 2844de25e9cbSPierre Jolivet 2845d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28469566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 284710c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28489566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28494dcd73b1SHong Zhang nnz = nnz / bs; 28504dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28519566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28529566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28534dcd73b1SHong Zhang } 28549566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28559566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28564dcd73b1SHong Zhang 28579566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28599566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28609566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28619566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28629566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2863d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 28644dcd73b1SHong Zhang } 28654dcd73b1SHong Zhang 286610c56fdeSHong Zhang /* numeric phase */ 28679566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28689566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 28694dcd73b1SHong Zhang 28709566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 28714dcd73b1SHong Zhang for (i = 0; i < m; i++) { 28729566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28734dcd73b1SHong Zhang Ii = i + rstart; 28749566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 28759566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28764dcd73b1SHong Zhang } 28779566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 28799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 28803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28814dcd73b1SHong Zhang } 2882