173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 11f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 12e249d750SSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 13f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode); 14f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 15e249d750SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 32f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 33f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 34f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 35f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 36f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51a30f8f8cSSatish Balay int ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66a30f8f8cSSatish Balay int ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay /* 76a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 77a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 78a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 79a30f8f8cSSatish Balay length of colmap equals the global matrix length. 80a30f8f8cSSatish Balay */ 814a2ae208SSatish Balay #undef __FUNCT__ 824a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 83a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 84a30f8f8cSSatish Balay { 85a30f8f8cSSatish Balay PetscFunctionBegin; 8629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 88a30f8f8cSSatish Balay } 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define CHUNKSIZE 10 91a30f8f8cSSatish Balay 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 97a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto a_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 116a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 117a30f8f8cSSatish Balay if (nrow >= rmax) { \ 118a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 119a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 120a30f8f8cSSatish Balay MatScalar *new_a; \ 121a30f8f8cSSatish Balay \ 122a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 123a30f8f8cSSatish Balay \ 124a30f8f8cSSatish Balay /* malloc new storage space */ \ 125a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12682502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 128a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 129a30f8f8cSSatish Balay \ 130a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 131a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 132a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13787828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 139a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay /* free up old matrix storage */ \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 143a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 144a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 145a30f8f8cSSatish Balay } \ 146a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 147a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 148a30f8f8cSSatish Balay \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 151b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 152a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 153a30f8f8cSSatish Balay a->reallocs++; \ 154a30f8f8cSSatish Balay a->s_nz++; \ 155a30f8f8cSSatish Balay } \ 156a30f8f8cSSatish Balay N = nrow++ - 1; \ 157a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 158a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 159a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 160a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 163a30f8f8cSSatish Balay rp[_i] = bcol; \ 164a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 165a30f8f8cSSatish Balay a_noinsert:; \ 166a30f8f8cSSatish Balay ailen[brow] = nrow; \ 167a30f8f8cSSatish Balay } 168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 169a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 170a30f8f8cSSatish Balay { \ 171a30f8f8cSSatish Balay brow = row/bs; \ 172a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 173a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 174a30f8f8cSSatish Balay bcol = col/bs; \ 175a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 176a30f8f8cSSatish Balay low = 0; high = nrow; \ 177a30f8f8cSSatish Balay while (high-low > 3) { \ 178a30f8f8cSSatish Balay t = (low+high)/2; \ 179a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 180a30f8f8cSSatish Balay else low = t; \ 181a30f8f8cSSatish Balay } \ 182a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 183a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 184a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 185a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 186a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 187a30f8f8cSSatish Balay else *bap = value; \ 188a30f8f8cSSatish Balay goto b_noinsert; \ 189a30f8f8cSSatish Balay } \ 190a30f8f8cSSatish Balay } \ 191a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 192a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 193a30f8f8cSSatish Balay if (nrow >= rmax) { \ 194a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 195a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 196a30f8f8cSSatish Balay MatScalar *new_a; \ 197a30f8f8cSSatish Balay \ 198a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 199a30f8f8cSSatish Balay \ 200a30f8f8cSSatish Balay /* malloc new storage space */ \ 201a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 204a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 205a30f8f8cSSatish Balay \ 206a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 207a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 208a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 215a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay /* free up old matrix storage */ \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 219a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 220a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 221a30f8f8cSSatish Balay } \ 222a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 223a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 224a30f8f8cSSatish Balay \ 225a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 226a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 227b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 228a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 229a30f8f8cSSatish Balay b->reallocs++; \ 230a30f8f8cSSatish Balay b->nz++; \ 231a30f8f8cSSatish Balay } \ 232a30f8f8cSSatish Balay N = nrow++ - 1; \ 233a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 234a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 235a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 236a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 237a30f8f8cSSatish Balay } \ 238a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 239a30f8f8cSSatish Balay rp[_i] = bcol; \ 240a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 241a30f8f8cSSatish Balay b_noinsert:; \ 242a30f8f8cSSatish Balay bilen[brow] = nrow; \ 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay #endif 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 249f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 250a30f8f8cSSatish Balay { 251a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 252a30f8f8cSSatish Balay int ierr,i,N = m*n; 253a30f8f8cSSatish Balay MatScalar *vsingle; 254a30f8f8cSSatish Balay 255a30f8f8cSSatish Balay PetscFunctionBegin; 256a30f8f8cSSatish Balay if (N > b->setvalueslen) { 257a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 259a30f8f8cSSatish Balay b->setvalueslen = N; 260a30f8f8cSSatish Balay } 261a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay for (i=0; i<N; i++) { 264a30f8f8cSSatish Balay vsingle[i] = v[i]; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 267a30f8f8cSSatish Balay PetscFunctionReturn(0); 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 272f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 273a30f8f8cSSatish Balay { 274a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 275a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 276a30f8f8cSSatish Balay MatScalar *vsingle; 277a30f8f8cSSatish Balay 278a30f8f8cSSatish Balay PetscFunctionBegin; 279a30f8f8cSSatish Balay if (N > b->setvalueslen) { 280a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 28182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 282a30f8f8cSSatish Balay b->setvalueslen = N; 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 285a30f8f8cSSatish Balay for (i=0; i<N; i++) { 286a30f8f8cSSatish Balay vsingle[i] = v[i]; 287a30f8f8cSSatish Balay } 288a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 289a30f8f8cSSatish Balay PetscFunctionReturn(0); 290a30f8f8cSSatish Balay } 291a30f8f8cSSatish Balay 2924a2ae208SSatish Balay #undef __FUNCT__ 2934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 294f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 295a30f8f8cSSatish Balay { 296a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 297a30f8f8cSSatish Balay int ierr,i,N = m*n; 298a30f8f8cSSatish Balay MatScalar *vsingle; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay PetscFunctionBegin; 30129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3024d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay 3054a2ae208SSatish Balay #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 307f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 308a30f8f8cSSatish Balay { 309a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 310a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 311a30f8f8cSSatish Balay MatScalar *vsingle; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 31429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3154d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay #endif 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 320a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 321a30f8f8cSSatish Balay */ 3224a2ae208SSatish Balay #undef __FUNCT__ 323e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 324f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 325a30f8f8cSSatish Balay { 326a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 327a30f8f8cSSatish Balay MatScalar value; 328b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 329a30f8f8cSSatish Balay int ierr,i,j,row,col; 330b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 331a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 332a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 333a30f8f8cSSatish Balay 334a30f8f8cSSatish Balay /* Some Variables required in the macro */ 335a30f8f8cSSatish Balay Mat A = baij->A; 336a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 337a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 338a30f8f8cSSatish Balay MatScalar *aa=a->a; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay Mat B = baij->B; 341a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 342a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 343a30f8f8cSSatish Balay MatScalar *ba=b->a; 344a30f8f8cSSatish Balay 345a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 346a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 347a30f8f8cSSatish Balay MatScalar *ap,*bap; 348a30f8f8cSSatish Balay 349a30f8f8cSSatish Balay /* for stash */ 350f65c83cfSHong Zhang int n_loc, *in_loc=0; 351f65c83cfSHong Zhang MatScalar *v_loc=0; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay PetscFunctionBegin; 354a30f8f8cSSatish Balay 355a30f8f8cSSatish Balay if(!baij->donotstash){ 35682502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35782502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 360a30f8f8cSSatish Balay for (i=0; i<m; i++) { 361a30f8f8cSSatish Balay if (im[i] < 0) continue; 362a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 363590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 364a30f8f8cSSatish Balay #endif 365a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 366a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 367a30f8f8cSSatish Balay for (j=0; j<n; j++) { 368f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 369a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 370a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 371a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 372a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 373a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 374a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 375a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 376a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 377a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 378590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 379a30f8f8cSSatish Balay #endif 380a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 381a30f8f8cSSatish Balay if (mat->was_assembled) { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38771730473SSatish Balay col = col - 1; 388a30f8f8cSSatish Balay #else 38971730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 392a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 393a30f8f8cSSatish Balay col = in[j]; 394a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 395a30f8f8cSSatish Balay B = baij->B; 396a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 397a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 398a30f8f8cSSatish Balay ba=b->a; 39971730473SSatish Balay } else col += in[j]%bs; 400a30f8f8cSSatish Balay } else col = in[j]; 401a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 402a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 403a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } else { /* off processor entry */ 407a30f8f8cSSatish Balay if (!baij->donotstash) { 408a30f8f8cSSatish Balay n_loc = 0; 409a30f8f8cSSatish Balay for (j=0; j<n; j++){ 410f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 411a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 412a30f8f8cSSatish Balay if (roworiented) { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay n_loc++; 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay } 423a30f8f8cSSatish Balay 424a30f8f8cSSatish Balay if(!baij->donotstash){ 425a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 426a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay PetscFunctionReturn(0); 429a30f8f8cSSatish Balay } 430a30f8f8cSSatish Balay 4314a2ae208SSatish Balay #undef __FUNCT__ 432e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 433f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 434a30f8f8cSSatish Balay { 4350880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 436f15d580aSBarry Smith const MatScalar *value; 437f15d580aSBarry Smith MatScalar *barray=baij->barray; 4380880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4390880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4400880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4410880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4420880e062SHong Zhang 443a30f8f8cSSatish Balay PetscFunctionBegin; 4440880e062SHong Zhang if(!barray) { 4450880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4460880e062SHong Zhang baij->barray = barray; 4470880e062SHong Zhang } 4480880e062SHong Zhang 4490880e062SHong Zhang if (roworiented) { 4500880e062SHong Zhang stepval = (n-1)*bs; 4510880e062SHong Zhang } else { 4520880e062SHong Zhang stepval = (m-1)*bs; 4530880e062SHong Zhang } 4540880e062SHong Zhang for (i=0; i<m; i++) { 4550880e062SHong Zhang if (im[i] < 0) continue; 4560880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 457590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4580880e062SHong Zhang #endif 4590880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4600880e062SHong Zhang row = im[i] - rstart; 4610880e062SHong Zhang for (j=0; j<n; j++) { 4620880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4630880e062SHong Zhang if ((roworiented) && (n == 1)) { 464f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4650880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 466f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4670880e062SHong Zhang } else { /* Here a copy is required */ 4680880e062SHong Zhang if (roworiented) { 4690880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4700880e062SHong Zhang } else { 4710880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4720880e062SHong Zhang } 4730880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4740880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4750880e062SHong Zhang *barray++ = *value++; 4760880e062SHong Zhang } 4770880e062SHong Zhang } 4780880e062SHong Zhang barray -=bs2; 4790880e062SHong Zhang } 4800880e062SHong Zhang 4810880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4820880e062SHong Zhang col = in[j] - cstart; 4830880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4840880e062SHong Zhang } 4850880e062SHong Zhang else if (in[j] < 0) continue; 4860880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 487590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4880880e062SHong Zhang #endif 4890880e062SHong Zhang else { 4900880e062SHong Zhang if (mat->was_assembled) { 4910880e062SHong Zhang if (!baij->colmap) { 4920880e062SHong Zhang ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4960880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4970880e062SHong Zhang { int data; 4980880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4990880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 5000880e062SHong Zhang } 5010880e062SHong Zhang #else 5020880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 5030880e062SHong Zhang #endif 5040880e062SHong Zhang #endif 5050880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 5060880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5070880e062SHong Zhang col = (col - 1)/bs; 5080880e062SHong Zhang #else 5090880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5100880e062SHong Zhang #endif 5110880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5120880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5130880e062SHong Zhang col = in[j]; 5140880e062SHong Zhang } 5150880e062SHong Zhang } 5160880e062SHong Zhang else col = in[j]; 517e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5180880e062SHong Zhang } 5190880e062SHong Zhang } 5200880e062SHong Zhang } else { 5210880e062SHong Zhang if (!baij->donotstash) { 5220880e062SHong Zhang if (roworiented) { 5230880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5240880e062SHong Zhang } else { 5250880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5260880e062SHong Zhang } 5270880e062SHong Zhang } 5280880e062SHong Zhang } 5290880e062SHong Zhang } 5300880e062SHong Zhang PetscFunctionReturn(0); 531a30f8f8cSSatish Balay } 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 534a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 535a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 536a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5374a2ae208SSatish Balay #undef __FUNCT__ 5384a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 539f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 540a30f8f8cSSatish Balay { 541a30f8f8cSSatish Balay PetscFunctionBegin; 54229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 54396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 548f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 549a30f8f8cSSatish Balay { 550a30f8f8cSSatish Balay PetscFunctionBegin; 55129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 553a30f8f8cSSatish Balay } 554a30f8f8cSSatish Balay 5554a2ae208SSatish Balay #undef __FUNCT__ 5564a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 557f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 558a30f8f8cSSatish Balay { 559f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 560a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 561a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 562a30f8f8cSSatish Balay 563a30f8f8cSSatish Balay PetscFunctionBegin; 564a30f8f8cSSatish Balay for (i=0; i<m; i++) { 565590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 566590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 567a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 568a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 569a30f8f8cSSatish Balay for (j=0; j<n; j++) { 570590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 571590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 572a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 573a30f8f8cSSatish Balay col = idxn[j] - bscstart; 574c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 575a30f8f8cSSatish Balay } else { 576a30f8f8cSSatish Balay if (!baij->colmap) { 577a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 578a30f8f8cSSatish Balay } 579a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 580a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 581a30f8f8cSSatish Balay data --; 582a30f8f8cSSatish Balay #else 583a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 584a30f8f8cSSatish Balay #endif 585a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 586a30f8f8cSSatish Balay else { 587a30f8f8cSSatish Balay col = data + idxn[j]%bs; 588e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay } 591a30f8f8cSSatish Balay } 592a30f8f8cSSatish Balay } else { 59329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 594a30f8f8cSSatish Balay } 595a30f8f8cSSatish Balay } 596a30f8f8cSSatish Balay PetscFunctionReturn(0); 597a30f8f8cSSatish Balay } 598a30f8f8cSSatish Balay 5994a2ae208SSatish Balay #undef __FUNCT__ 6004a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 601a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 602a30f8f8cSSatish Balay { 603a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 604bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 605bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 606a30f8f8cSSatish Balay int ierr; 607a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 608a30f8f8cSSatish Balay 609a30f8f8cSSatish Balay PetscFunctionBegin; 610a30f8f8cSSatish Balay if (baij->size == 1) { 611a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 612a30f8f8cSSatish Balay } else { 613a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 614f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 615a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 616a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 617a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 618a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 619a30f8f8cSSatish Balay /* 62056faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 62156faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 622a30f8f8cSSatish Balay */ 623d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 624a30f8f8cSSatish Balay /* 62556faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 62656faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 627a30f8f8cSSatish Balay 628a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 629a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 630a30f8f8cSSatish Balay } else { 63129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 632a30f8f8cSSatish Balay } 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay PetscFunctionReturn(0); 635a30f8f8cSSatish Balay } 636a30f8f8cSSatish Balay 637a30f8f8cSSatish Balay /* 638a30f8f8cSSatish Balay Creates the hash table, and sets the table 639a30f8f8cSSatish Balay This table is created only once. 640a30f8f8cSSatish Balay If new entried need to be added to the matrix 641a30f8f8cSSatish Balay then the hash table has to be destroyed and 642a30f8f8cSSatish Balay recreated. 643a30f8f8cSSatish Balay */ 6444a2ae208SSatish Balay #undef __FUNCT__ 6454a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 646a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 647a30f8f8cSSatish Balay { 648a30f8f8cSSatish Balay PetscFunctionBegin; 64929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 65096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 651a30f8f8cSSatish Balay } 652a30f8f8cSSatish Balay 6534a2ae208SSatish Balay #undef __FUNCT__ 6544a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 655a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 656a30f8f8cSSatish Balay { 657a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 658a30f8f8cSSatish Balay int ierr,nstash,reallocs; 659a30f8f8cSSatish Balay InsertMode addv; 660a30f8f8cSSatish Balay 661a30f8f8cSSatish Balay PetscFunctionBegin; 662a30f8f8cSSatish Balay if (baij->donotstash) { 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 666a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 667a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 668a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 66929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 672a30f8f8cSSatish Balay 673a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 674a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 675a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 676b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 677a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 678b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 679a30f8f8cSSatish Balay PetscFunctionReturn(0); 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay 6824a2ae208SSatish Balay #undef __FUNCT__ 6834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 684a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 685a30f8f8cSSatish Balay { 686a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 687a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 688a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 689a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 690a30f8f8cSSatish Balay int *row,*col,other_disassembled; 691a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 692a30f8f8cSSatish Balay MatScalar *val; 693a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 694a30f8f8cSSatish Balay 695a30f8f8cSSatish Balay PetscFunctionBegin; 696a30f8f8cSSatish Balay 697a30f8f8cSSatish Balay if (!baij->donotstash) { 698a30f8f8cSSatish Balay while (1) { 699a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 700a30f8f8cSSatish Balay /* 70156faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 70256faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 703a30f8f8cSSatish Balay */ 704a30f8f8cSSatish Balay if (!flg) break; 705a30f8f8cSSatish Balay 706a30f8f8cSSatish Balay for (i=0; i<n;) { 707a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 708a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 709a30f8f8cSSatish Balay if (j < n) ncols = j-i; 710a30f8f8cSSatish Balay else ncols = n-i; 711a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 712a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 713a30f8f8cSSatish Balay i = j; 714a30f8f8cSSatish Balay } 715a30f8f8cSSatish Balay } 716a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 717a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 718a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 719a30f8f8cSSatish Balay restore the original flags */ 720a30f8f8cSSatish Balay r1 = baij->roworiented; 721a30f8f8cSSatish Balay r2 = a->roworiented; 722a30f8f8cSSatish Balay r3 = b->roworiented; 723a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 724a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 725a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 726a30f8f8cSSatish Balay while (1) { 727a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 728a30f8f8cSSatish Balay if (!flg) break; 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay for (i=0; i<n;) { 731a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 732a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 733a30f8f8cSSatish Balay if (j < n) ncols = j-i; 734a30f8f8cSSatish Balay else ncols = n-i; 735a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 736a30f8f8cSSatish Balay i = j; 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 740a30f8f8cSSatish Balay baij->roworiented = r1; 741a30f8f8cSSatish Balay a->roworiented = r2; 742a30f8f8cSSatish Balay b->roworiented = r3; 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 746a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 747a30f8f8cSSatish Balay 748a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 749a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 750a30f8f8cSSatish Balay /* 751a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 752a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 753a30f8f8cSSatish Balay */ 754a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 755a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 756a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 757c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 758a30f8f8cSSatish Balay } 759a30f8f8cSSatish Balay } 760a30f8f8cSSatish Balay 761a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 76240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 763a30f8f8cSSatish Balay } 764a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 765a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 766a30f8f8cSSatish Balay 767a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 768a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 769f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 770a30f8f8cSSatish Balay baij->ht_total_ct = 0; 771a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay #endif 774a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 775c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 776a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 777a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay 780a30f8f8cSSatish Balay if (baij->rowvalues) { 781a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 782a30f8f8cSSatish Balay baij->rowvalues = 0; 783a30f8f8cSSatish Balay } 7845222a1afSHong Zhang 785a30f8f8cSSatish Balay PetscFunctionReturn(0); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 7884a2ae208SSatish Balay #undef __FUNCT__ 7894a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 790b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 791a30f8f8cSSatish Balay { 792a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 793fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 794a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 795b0a32e0cSBarry Smith PetscViewer sviewer; 796f3ef73ceSBarry Smith PetscViewerFormat format; 797a30f8f8cSSatish Balay 798a30f8f8cSSatish Balay PetscFunctionBegin; 799b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 800fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 801a30f8f8cSSatish Balay if (isascii) { 802b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 803456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 804a30f8f8cSSatish Balay MatInfo info; 805a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 806a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 807b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 808b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 809a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 810a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 811b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 812a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 813b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 814b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 815a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 816a30f8f8cSSatish Balay PetscFunctionReturn(0); 817fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 818b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 819a30f8f8cSSatish Balay PetscFunctionReturn(0); 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay } 822a30f8f8cSSatish Balay 823a30f8f8cSSatish Balay if (isdraw) { 824b0a32e0cSBarry Smith PetscDraw draw; 825a30f8f8cSSatish Balay PetscTruth isnull; 826b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 827b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay 830a30f8f8cSSatish Balay if (size == 1) { 831e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 832a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 833a30f8f8cSSatish Balay } else { 834a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 835a30f8f8cSSatish Balay Mat A; 83665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 83765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 838b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 839a30f8f8cSSatish Balay MatScalar *a; 840a30f8f8cSSatish Balay 841a30f8f8cSSatish Balay if (!rank) { 842bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 843a30f8f8cSSatish Balay } else { 844f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 845a30f8f8cSSatish Balay } 846b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 847a30f8f8cSSatish Balay 848a30f8f8cSSatish Balay /* copy over the A part */ 84965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 850a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 85182502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 852a30f8f8cSSatish Balay 853a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 854a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 855a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 856a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 857a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 858a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 859a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 860a30f8f8cSSatish Balay col++; a += bs; 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay } 864a30f8f8cSSatish Balay /* copy over the B part */ 86565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 86665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 867a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 868a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 869a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 870a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 871a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 872a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 873a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 874a30f8f8cSSatish Balay col++; a += bs; 875a30f8f8cSSatish Balay } 876a30f8f8cSSatish Balay } 877a30f8f8cSSatish Balay } 878a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 879a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 880a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 881a30f8f8cSSatish Balay /* 882a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 883b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 884a30f8f8cSSatish Balay */ 885b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 88665d70643SHong Zhang if (!rank) { 887e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 888a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 889a30f8f8cSSatish Balay } 890b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 891a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 892a30f8f8cSSatish Balay } 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 8964a2ae208SSatish Balay #undef __FUNCT__ 8974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 898b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 899a30f8f8cSSatish Balay { 900a30f8f8cSSatish Balay int ierr; 901a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 902a30f8f8cSSatish Balay 903a30f8f8cSSatish Balay PetscFunctionBegin; 904b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 905fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 906b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 907fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 908a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 909a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 910a30f8f8cSSatish Balay } else { 91129bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 912a30f8f8cSSatish Balay } 913a30f8f8cSSatish Balay PetscFunctionReturn(0); 914a30f8f8cSSatish Balay } 915a30f8f8cSSatish Balay 9164a2ae208SSatish Balay #undef __FUNCT__ 9174a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 918a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 919a30f8f8cSSatish Balay { 920a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 921a30f8f8cSSatish Balay int ierr; 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay PetscFunctionBegin; 924a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 925b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 926a30f8f8cSSatish Balay #endif 927a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 928a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 929a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 930a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 931a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 932a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 933a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 934a30f8f8cSSatish Balay #else 935a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay #endif 937a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 938a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 939a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 94040781036SHong Zhang if (baij->slvec0) { 94140781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 94240781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 94340781036SHong Zhang } 94440781036SHong Zhang if (baij->slvec1) { 94540781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 94640781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 94740781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 94840781036SHong Zhang } 94940781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 950a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 951a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 952a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 953a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 954a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 955a30f8f8cSSatish Balay #endif 956a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 957a30f8f8cSSatish Balay PetscFunctionReturn(0); 958a30f8f8cSSatish Balay } 959a30f8f8cSSatish Balay 9604a2ae208SSatish Balay #undef __FUNCT__ 961a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 962a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 963a9d4b620SHong Zhang { 964a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9654024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 966a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang PetscFunctionBegin; 969a9d4b620SHong Zhang /* 97056faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," _1comm is called ...\n"); 97156faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 972a9d4b620SHong Zhang */ 973a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 974a9d4b620SHong Zhang if (nt != A->n) { 975a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 976a9d4b620SHong Zhang } 977a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 978a9d4b620SHong Zhang if (nt != A->m) { 979a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 980a9d4b620SHong Zhang } 981a9d4b620SHong Zhang 982a9d4b620SHong Zhang /* diagonal part */ 983a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 984a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 985a9d4b620SHong Zhang 986a9d4b620SHong Zhang /* subdiagonal part */ 987a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 988a9d4b620SHong Zhang 989a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 990a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 991a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 992a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 993a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 994a9d4b620SHong Zhang 995a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 996a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 997a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 998a9d4b620SHong Zhang 999a9d4b620SHong Zhang /* supperdiagonal part */ 1000a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1001a9d4b620SHong Zhang 1002a9d4b620SHong Zhang PetscFunctionReturn(0); 1003a9d4b620SHong Zhang } 1004a9d4b620SHong Zhang 1005a9d4b620SHong Zhang #undef __FUNCT__ 100640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 100740781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1008a30f8f8cSSatish Balay { 1009a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1010a30f8f8cSSatish Balay int ierr,nt; 1011a30f8f8cSSatish Balay 1012a30f8f8cSSatish Balay PetscFunctionBegin; 1013a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1014b5df2d14SHong Zhang if (nt != A->n) { 101529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1016a30f8f8cSSatish Balay } 1017a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1018b5df2d14SHong Zhang if (nt != A->m) { 101929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1020a30f8f8cSSatish Balay } 102165d70643SHong Zhang 1022b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1023b941877fSHong Zhang /* do diagonal part */ 1024b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1025b941877fSHong Zhang /* do supperdiagonal part */ 1026b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1027b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1028b941877fSHong Zhang /* do subdiagonal part */ 1029b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1030b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1031b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 103265d70643SHong Zhang 1033a30f8f8cSSatish Balay PetscFunctionReturn(0); 1034a30f8f8cSSatish Balay } 1035a30f8f8cSSatish Balay 10364a2ae208SSatish Balay #undef __FUNCT__ 10374a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1038a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1039a30f8f8cSSatish Balay { 1040de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1041a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1042a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1043a9d4b620SHong Zhang 1044a9d4b620SHong Zhang PetscFunctionBegin; 1045a9d4b620SHong Zhang /* 104656faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 104756faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1048a9d4b620SHong Zhang */ 1049a9d4b620SHong Zhang /* diagonal part */ 1050a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1051a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1052a9d4b620SHong Zhang 1053a9d4b620SHong Zhang /* subdiagonal part */ 1054a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1055a9d4b620SHong Zhang 1056a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 1057a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1058a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1059a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1060a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1061a9d4b620SHong Zhang 1062a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1063a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1064a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1065a9d4b620SHong Zhang 1066a9d4b620SHong Zhang /* supperdiagonal part */ 1067a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1068a9d4b620SHong Zhang 1069a9d4b620SHong Zhang PetscFunctionReturn(0); 1070a9d4b620SHong Zhang } 1071a9d4b620SHong Zhang 1072a9d4b620SHong Zhang #undef __FUNCT__ 1073a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1074a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1075a9d4b620SHong Zhang { 1076a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1077aa482183SHong Zhang int ierr; 1078a30f8f8cSSatish Balay 1079a30f8f8cSSatish Balay PetscFunctionBegin; 1080b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1081b941877fSHong Zhang /* do diagonal part */ 1082b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1083b941877fSHong Zhang /* do supperdiagonal part */ 1084b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1085de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1086de8b6608SHong Zhang 1087b941877fSHong Zhang /* do subdiagonal part */ 1088a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1089a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1090a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1091aa482183SHong Zhang 1092a30f8f8cSSatish Balay PetscFunctionReturn(0); 1093a30f8f8cSSatish Balay } 1094a30f8f8cSSatish Balay 10954a2ae208SSatish Balay #undef __FUNCT__ 10964a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1097a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1098a30f8f8cSSatish Balay { 1099a30f8f8cSSatish Balay PetscFunctionBegin; 110029bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 110196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1102a30f8f8cSSatish Balay } 1103a30f8f8cSSatish Balay 11044a2ae208SSatish Balay #undef __FUNCT__ 11054a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1106a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1107a30f8f8cSSatish Balay { 1108a30f8f8cSSatish Balay PetscFunctionBegin; 110929bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 111096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1111a30f8f8cSSatish Balay } 1112a30f8f8cSSatish Balay 1113a30f8f8cSSatish Balay /* 1114a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1115a30f8f8cSSatish Balay diagonal block 1116a30f8f8cSSatish Balay */ 11174a2ae208SSatish Balay #undef __FUNCT__ 11184a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1119a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1120a30f8f8cSSatish Balay { 1121a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1122a30f8f8cSSatish Balay int ierr; 1123a30f8f8cSSatish Balay 1124a30f8f8cSSatish Balay PetscFunctionBegin; 112529bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1126a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1127a30f8f8cSSatish Balay PetscFunctionReturn(0); 1128a30f8f8cSSatish Balay } 1129a30f8f8cSSatish Balay 11304a2ae208SSatish Balay #undef __FUNCT__ 11314a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1132268466fbSBarry Smith int MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1133a30f8f8cSSatish Balay { 1134a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1135a30f8f8cSSatish Balay int ierr; 1136a30f8f8cSSatish Balay 1137a30f8f8cSSatish Balay PetscFunctionBegin; 1138a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1139a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1140a30f8f8cSSatish Balay PetscFunctionReturn(0); 1141a30f8f8cSSatish Balay } 1142a30f8f8cSSatish Balay 11434a2ae208SSatish Balay #undef __FUNCT__ 11444a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 114587828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1146a30f8f8cSSatish Balay { 1147a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 114887828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1149a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1150a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1151a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1152a30f8f8cSSatish Balay 1153a30f8f8cSSatish Balay PetscFunctionBegin; 115429bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1155a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1156a30f8f8cSSatish Balay 1157a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1158a30f8f8cSSatish Balay /* 1159a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1160a30f8f8cSSatish Balay */ 1161a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1162a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1163a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1164a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1165a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1166a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1167a30f8f8cSSatish Balay } 116887828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1169a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1170a30f8f8cSSatish Balay } 1171a30f8f8cSSatish Balay 117229bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1173a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1174a30f8f8cSSatish Balay 1175a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1176a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1177a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1178a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1179a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1180a30f8f8cSSatish Balay nztot = nzA + nzB; 1181a30f8f8cSSatish Balay 1182a30f8f8cSSatish Balay cmap = mat->garray; 1183a30f8f8cSSatish Balay if (v || idx) { 1184a30f8f8cSSatish Balay if (nztot) { 1185a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1186a30f8f8cSSatish Balay int imark = -1; 1187a30f8f8cSSatish Balay if (v) { 1188a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1189a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1190a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1191a30f8f8cSSatish Balay else break; 1192a30f8f8cSSatish Balay } 1193a30f8f8cSSatish Balay imark = i; 1194a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1195a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1196a30f8f8cSSatish Balay } 1197a30f8f8cSSatish Balay if (idx) { 1198a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1199a30f8f8cSSatish Balay if (imark > -1) { 1200a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1201a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1202a30f8f8cSSatish Balay } 1203a30f8f8cSSatish Balay } else { 1204a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1205a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1206a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1207a30f8f8cSSatish Balay else break; 1208a30f8f8cSSatish Balay } 1209a30f8f8cSSatish Balay imark = i; 1210a30f8f8cSSatish Balay } 1211a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1212a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1213a30f8f8cSSatish Balay } 1214a30f8f8cSSatish Balay } else { 1215a30f8f8cSSatish Balay if (idx) *idx = 0; 1216a30f8f8cSSatish Balay if (v) *v = 0; 1217a30f8f8cSSatish Balay } 1218a30f8f8cSSatish Balay } 1219a30f8f8cSSatish Balay *nz = nztot; 1220a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1221a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1222a30f8f8cSSatish Balay PetscFunctionReturn(0); 1223a30f8f8cSSatish Balay } 1224a30f8f8cSSatish Balay 12254a2ae208SSatish Balay #undef __FUNCT__ 12264a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 122787828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1228a30f8f8cSSatish Balay { 1229a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1230a30f8f8cSSatish Balay 1231a30f8f8cSSatish Balay PetscFunctionBegin; 1232a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 123329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1234a30f8f8cSSatish Balay } 1235a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1236a30f8f8cSSatish Balay PetscFunctionReturn(0); 1237a30f8f8cSSatish Balay } 1238a30f8f8cSSatish Balay 12394a2ae208SSatish Balay #undef __FUNCT__ 12404a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1241a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1242a30f8f8cSSatish Balay { 1243a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1244a30f8f8cSSatish Balay 1245a30f8f8cSSatish Balay PetscFunctionBegin; 1246a30f8f8cSSatish Balay *bs = baij->bs; 1247a30f8f8cSSatish Balay PetscFunctionReturn(0); 1248a30f8f8cSSatish Balay } 1249a30f8f8cSSatish Balay 12504a2ae208SSatish Balay #undef __FUNCT__ 12514a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1252a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1253a30f8f8cSSatish Balay { 1254a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1255a30f8f8cSSatish Balay int ierr; 1256a30f8f8cSSatish Balay 1257a30f8f8cSSatish Balay PetscFunctionBegin; 1258a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1259a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1260a30f8f8cSSatish Balay PetscFunctionReturn(0); 1261a30f8f8cSSatish Balay } 1262a30f8f8cSSatish Balay 12634a2ae208SSatish Balay #undef __FUNCT__ 12644a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1265a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1266a30f8f8cSSatish Balay { 1267a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1268a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1269a30f8f8cSSatish Balay int ierr; 1270a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1271a30f8f8cSSatish Balay 1272a30f8f8cSSatish Balay PetscFunctionBegin; 1273f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1274a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1275a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1276a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1277a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1278a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1279a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1280a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1281a30f8f8cSSatish Balay info->nz_used = isend[0]; 1282a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1283a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1284a30f8f8cSSatish Balay info->memory = isend[3]; 1285a30f8f8cSSatish Balay info->mallocs = isend[4]; 1286a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1287d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1288a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1289a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1290a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1291a30f8f8cSSatish Balay info->memory = irecv[3]; 1292a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1293a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1294d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1295a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1296a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1297a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1298a30f8f8cSSatish Balay info->memory = irecv[3]; 1299a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1300a30f8f8cSSatish Balay } else { 130129bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1302a30f8f8cSSatish Balay } 1303f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1304f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1305f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1306f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1307a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1308a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1309a30f8f8cSSatish Balay info->factor_mallocs = 0; 1310a30f8f8cSSatish Balay PetscFunctionReturn(0); 1311a30f8f8cSSatish Balay } 1312a30f8f8cSSatish Balay 13134a2ae208SSatish Balay #undef __FUNCT__ 13144a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1315a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1316a30f8f8cSSatish Balay { 1317a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1318a30f8f8cSSatish Balay int ierr; 1319a30f8f8cSSatish Balay 1320a30f8f8cSSatish Balay PetscFunctionBegin; 1321e98b92d7SKris Buschelman switch (op) { 1322e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1323e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1324e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1325e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1326e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1327e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1328e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1329a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1330a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1331e98b92d7SKris Buschelman break; 1332e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1333a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1334a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1335a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1336e98b92d7SKris Buschelman break; 1337e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1338e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1339e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1340b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1341e98b92d7SKris Buschelman break; 1342e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1343a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1344a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1345a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1346e98b92d7SKris Buschelman break; 1347e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1348a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1349e98b92d7SKris Buschelman break; 1350e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 135129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1352e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1353a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1354e98b92d7SKris Buschelman break; 1355*77e54ba9SKris Buschelman case MAT_SYMMETRIC: 1356*77e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1357*77e54ba9SKris Buschelman break; 1358e98b92d7SKris Buschelman default: 135929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1360a30f8f8cSSatish Balay } 1361a30f8f8cSSatish Balay PetscFunctionReturn(0); 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay 13644a2ae208SSatish Balay #undef __FUNCT__ 13658115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13668115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1367a30f8f8cSSatish Balay { 13688115998fSBarry Smith int ierr; 1369a30f8f8cSSatish Balay PetscFunctionBegin; 1370999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13718115998fSBarry Smith PetscFunctionReturn(0); 1372a30f8f8cSSatish Balay } 1373a30f8f8cSSatish Balay 13744a2ae208SSatish Balay #undef __FUNCT__ 13754a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1376a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1377a30f8f8cSSatish Balay { 1378a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1379a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1380a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1381a30f8f8cSSatish Balay 1382a30f8f8cSSatish Balay PetscFunctionBegin; 1383a30f8f8cSSatish Balay if (ll != rr) { 138429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1385a30f8f8cSSatish Balay } 1386a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1387a30f8f8cSSatish Balay if (rr) { 1388a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138929bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1390a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1391a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1392a30f8f8cSSatish Balay /*} if (ll) { */ 1393a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 139429bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1395a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay /* } */ 1397a30f8f8cSSatish Balay /* scale the diagonal block */ 1398a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1399a30f8f8cSSatish Balay 1400a30f8f8cSSatish Balay /* if (rr) { */ 1401a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1402a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1403a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1404a30f8f8cSSatish Balay } 1405a30f8f8cSSatish Balay 1406a30f8f8cSSatish Balay PetscFunctionReturn(0); 1407a30f8f8cSSatish Balay } 1408a30f8f8cSSatish Balay 14094a2ae208SSatish Balay #undef __FUNCT__ 14104a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1411268466fbSBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1412a30f8f8cSSatish Balay { 1413a30f8f8cSSatish Balay PetscFunctionBegin; 1414c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1415a30f8f8cSSatish Balay } 1416a30f8f8cSSatish Balay 14174a2ae208SSatish Balay #undef __FUNCT__ 14184a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1419a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1420a30f8f8cSSatish Balay { 1421a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1422a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1423a30f8f8cSSatish Balay static int called = 0; 1424a30f8f8cSSatish Balay int ierr; 1425a30f8f8cSSatish Balay 1426a30f8f8cSSatish Balay PetscFunctionBegin; 1427a30f8f8cSSatish Balay if (!a->rank) { 1428a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1429a30f8f8cSSatish Balay } 1430a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1431a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1432a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1433a30f8f8cSSatish Balay PetscFunctionReturn(0); 1434a30f8f8cSSatish Balay } 1435a30f8f8cSSatish Balay 14364a2ae208SSatish Balay #undef __FUNCT__ 14374a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1438a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1439a30f8f8cSSatish Balay { 1440f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1441a30f8f8cSSatish Balay int ierr; 1442a30f8f8cSSatish Balay 1443a30f8f8cSSatish Balay PetscFunctionBegin; 1444a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1445a30f8f8cSSatish Balay PetscFunctionReturn(0); 1446a30f8f8cSSatish Balay } 1447a30f8f8cSSatish Balay 1448a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1449a30f8f8cSSatish Balay 14504a2ae208SSatish Balay #undef __FUNCT__ 14514a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1452a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1453a30f8f8cSSatish Balay { 1454a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1455a30f8f8cSSatish Balay Mat a,b,c,d; 1456a30f8f8cSSatish Balay PetscTruth flg; 1457a30f8f8cSSatish Balay int ierr; 1458a30f8f8cSSatish Balay 1459a30f8f8cSSatish Balay PetscFunctionBegin; 1460a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1461a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1462a30f8f8cSSatish Balay 1463a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1464a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1465a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1466a30f8f8cSSatish Balay } 1467a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1468a30f8f8cSSatish Balay PetscFunctionReturn(0); 1469a30f8f8cSSatish Balay } 1470a30f8f8cSSatish Balay 14714a2ae208SSatish Balay #undef __FUNCT__ 14724a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1473273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1474273d9f13SBarry Smith { 1475273d9f13SBarry Smith int ierr; 1476273d9f13SBarry Smith 1477273d9f13SBarry Smith PetscFunctionBegin; 1478273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1479273d9f13SBarry Smith PetscFunctionReturn(0); 1480273d9f13SBarry Smith } 1481a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1482a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1483a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1484a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1485a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1486a9d4b620SHong Zhang MatMult_MPISBAIJ, 148797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1488a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1489a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 149397304618SKris Buschelman /*10*/ 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 14962798e883SHong Zhang MatRelax_MPISBAIJ, 1497a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 149897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1499a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1500a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1501a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1502a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 150397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1504a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1507a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 150897304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 151397304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1514b5df2d14SHong Zhang 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 151897304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 152397304618SKris Buschelman /*40*/ 0, 15240b15b8e2SSatish Balay 0, 15250b15b8e2SSatish Balay 0, 1526a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1527a30f8f8cSSatish Balay 0, 152897304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1529a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 153397304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 153897304618SKris Buschelman /*55*/ 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 154397304618SKris Buschelman /*60*/ 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 15468a124369SBarry Smith MatGetPetscMaps_Petsc, 154724d5174aSHong Zhang 0, 154897304618SKris Buschelman /*65*/ 0, 154924d5174aSHong Zhang 0, 155024d5174aSHong Zhang 0, 155124d5174aSHong Zhang 0, 155224d5174aSHong Zhang 0, 155397304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 155424d5174aSHong Zhang 0, 155597304618SKris Buschelman 0, 155697304618SKris Buschelman 0, 155797304618SKris Buschelman 0, 155897304618SKris Buschelman /*75*/ 0, 155997304618SKris Buschelman 0, 156097304618SKris Buschelman 0, 156197304618SKris Buschelman 0, 156297304618SKris Buschelman 0, 156397304618SKris Buschelman /*80*/ 0, 156497304618SKris Buschelman 0, 156597304618SKris Buschelman 0, 156697304618SKris Buschelman 0, 156797304618SKris Buschelman 0, 156897304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ 156997304618SKris Buschelman }; 1570a30f8f8cSSatish Balay 1571a30f8f8cSSatish Balay 1572a30f8f8cSSatish Balay EXTERN_C_BEGIN 15734a2ae208SSatish Balay #undef __FUNCT__ 15744a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1575a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1576a30f8f8cSSatish Balay { 1577a30f8f8cSSatish Balay PetscFunctionBegin; 1578a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1579a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1580a30f8f8cSSatish Balay PetscFunctionReturn(0); 1581a30f8f8cSSatish Balay } 1582a30f8f8cSSatish Balay EXTERN_C_END 1583a30f8f8cSSatish Balay 1584273d9f13SBarry Smith EXTERN_C_BEGIN 15854a2ae208SSatish Balay #undef __FUNCT__ 1586a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1587a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1588a23d5eceSKris Buschelman { 1589a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1590a23d5eceSKris Buschelman int ierr,i,mbs,Mbs; 1591a23d5eceSKris Buschelman 1592a23d5eceSKris Buschelman PetscFunctionBegin; 1593a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1594a23d5eceSKris Buschelman 1595a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1596a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1597a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1598a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1599a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1600a23d5eceSKris Buschelman if (d_nnz) { 1601a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1602a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1603a23d5eceSKris Buschelman } 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman if (o_nnz) { 1606a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1607a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1608a23d5eceSKris Buschelman } 1609a23d5eceSKris Buschelman } 1610a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1611a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1612a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1613a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1614a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1615a23d5eceSKris Buschelman 1616a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1617a23d5eceSKris Buschelman mbs = B->m/bs; 1618a23d5eceSKris Buschelman Mbs = B->M/bs; 1619a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1620a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1621a23d5eceSKris Buschelman } 1622a23d5eceSKris Buschelman 1623a23d5eceSKris Buschelman b->bs = bs; 1624a23d5eceSKris Buschelman b->bs2 = bs*bs; 1625a23d5eceSKris Buschelman b->mbs = mbs; 1626a23d5eceSKris Buschelman b->nbs = mbs; 1627a23d5eceSKris Buschelman b->Mbs = Mbs; 1628a23d5eceSKris Buschelman b->Nbs = Mbs; 1629a23d5eceSKris Buschelman 1630a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1631a23d5eceSKris Buschelman b->rowners[0] = 0; 1632a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1633a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1634a23d5eceSKris Buschelman } 1635a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1636a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1637a23d5eceSKris Buschelman b->cstart = b->rstart; 1638a23d5eceSKris Buschelman b->cend = b->rend; 1639a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1640a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1641a23d5eceSKris Buschelman } 1642a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1643a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1644a23d5eceSKris Buschelman 1645a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1646a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1647a23d5eceSKris Buschelman 1648a23d5eceSKris Buschelman 1649a23d5eceSKris Buschelman ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1650a23d5eceSKris Buschelman PetscLogObjectParent(B,b->A); 1651a23d5eceSKris Buschelman ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1652a23d5eceSKris Buschelman PetscLogObjectParent(B,b->B); 1653a23d5eceSKris Buschelman 1654a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1655a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1656a23d5eceSKris Buschelman 1657a23d5eceSKris Buschelman PetscFunctionReturn(0); 1658a23d5eceSKris Buschelman } 1659a23d5eceSKris Buschelman EXTERN_C_END 1660a23d5eceSKris Buschelman 16610bad9183SKris Buschelman /*MC 1662fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16630bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16640bad9183SKris Buschelman 16650bad9183SKris Buschelman Options Database Keys: 16660bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16670bad9183SKris Buschelman 16680bad9183SKris Buschelman Level: beginner 16690bad9183SKris Buschelman 16700bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16710bad9183SKris Buschelman M*/ 16720bad9183SKris Buschelman 1673a23d5eceSKris Buschelman EXTERN_C_BEGIN 1674a23d5eceSKris Buschelman #undef __FUNCT__ 16754a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1676b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1677b5df2d14SHong Zhang { 1678b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1679ca54ac64SHong Zhang int ierr; 1680b5df2d14SHong Zhang PetscTruth flg; 1681b5df2d14SHong Zhang 1682b5df2d14SHong Zhang PetscFunctionBegin; 1683b5df2d14SHong Zhang 1684b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1685b0a32e0cSBarry Smith B->data = (void*)b; 1686b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1687b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1688b5df2d14SHong Zhang 1689b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1690b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1691b5df2d14SHong Zhang B->mapping = 0; 1692b5df2d14SHong Zhang B->factor = 0; 1693b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1696b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1697b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang /* build local table of row and column ownerships */ 170082502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1701273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1702273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1703b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1704b5df2d14SHong Zhang 1705b5df2d14SHong Zhang /* build cache for off array entries formed */ 1706b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1707b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1708b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1709b5df2d14SHong Zhang b->garray = PETSC_NULL; 1710b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1711b5df2d14SHong Zhang 1712f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1713b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 171464a35ccbSBarry Smith b->setvalueslen = 0; 1715b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1716b5df2d14SHong Zhang #endif 1717b5df2d14SHong Zhang 1718b5df2d14SHong Zhang /* stuff used in block assembly */ 1719b5df2d14SHong Zhang b->barray = 0; 1720b5df2d14SHong Zhang 1721b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1722b5df2d14SHong Zhang b->lvec = 0; 1723b5df2d14SHong Zhang b->Mvctx = 0; 172440781036SHong Zhang b->slvec0 = 0; 172540781036SHong Zhang b->slvec0b = 0; 172640781036SHong Zhang b->slvec1 = 0; 172740781036SHong Zhang b->slvec1a = 0; 172840781036SHong Zhang b->slvec1b = 0; 172940781036SHong Zhang b->sMvctx = 0; 1730b5df2d14SHong Zhang 1731b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1732b5df2d14SHong Zhang b->rowindices = 0; 1733b5df2d14SHong Zhang b->rowvalues = 0; 1734b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1735b5df2d14SHong Zhang 1736b5df2d14SHong Zhang /* hash table stuff */ 1737b5df2d14SHong Zhang b->ht = 0; 1738b5df2d14SHong Zhang b->hd = 0; 1739b5df2d14SHong Zhang b->ht_size = 0; 1740b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1741b5df2d14SHong Zhang b->ht_fact = 0; 1742b5df2d14SHong Zhang b->ht_total_ct = 0; 1743b5df2d14SHong Zhang b->ht_insert_ct = 0; 1744b5df2d14SHong Zhang 1745e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1746b5df2d14SHong Zhang if (flg) { 1747f6275e2eSBarry Smith PetscReal fact = 1.39; 1748b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1749e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1750b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1751b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1752b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1753b5df2d14SHong Zhang } 1754b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1755b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1756b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1757b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1758b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1759b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1760b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1761b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1762b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1763a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1764a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1765a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1766b5df2d14SHong Zhang PetscFunctionReturn(0); 1767b5df2d14SHong Zhang } 1768273d9f13SBarry Smith EXTERN_C_END 1769b5df2d14SHong Zhang 1770209238afSKris Buschelman /*MC 1771002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1772209238afSKris Buschelman 1773209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1774209238afSKris Buschelman and MATMPISBAIJ otherwise. 1775209238afSKris Buschelman 1776209238afSKris Buschelman Options Database Keys: 1777209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1778209238afSKris Buschelman 1779209238afSKris Buschelman Level: beginner 1780209238afSKris Buschelman 1781209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1782209238afSKris Buschelman M*/ 1783209238afSKris Buschelman 1784209238afSKris Buschelman EXTERN_C_BEGIN 1785209238afSKris Buschelman #undef __FUNCT__ 1786209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1787209238afSKris Buschelman int MatCreate_SBAIJ(Mat A) { 1788209238afSKris Buschelman int ierr,size; 1789209238afSKris Buschelman 1790209238afSKris Buschelman PetscFunctionBegin; 1791209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1792209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1793209238afSKris Buschelman if (size == 1) { 1794209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1795209238afSKris Buschelman } else { 1796209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1797209238afSKris Buschelman } 1798209238afSKris Buschelman PetscFunctionReturn(0); 1799209238afSKris Buschelman } 1800209238afSKris Buschelman EXTERN_C_END 1801209238afSKris Buschelman 18024a2ae208SSatish Balay #undef __FUNCT__ 18034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1804b5df2d14SHong Zhang /*@C 1805b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1806b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1807b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1808b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1809b5df2d14SHong Zhang 1810b5df2d14SHong Zhang Collective on Mat 1811b5df2d14SHong Zhang 1812b5df2d14SHong Zhang Input Parameters: 1813b5df2d14SHong Zhang + A - the matrix 1814b5df2d14SHong Zhang . bs - size of blockk 1815b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1816b5df2d14SHong Zhang submatrix (same for all local rows) 1817b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18186d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18196d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18206d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1821b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1822b5df2d14SHong Zhang submatrix (same for all local rows). 1823b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1824b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1825b5df2d14SHong Zhang each block row) or PETSC_NULL. 1826b5df2d14SHong Zhang 1827b5df2d14SHong Zhang 1828b5df2d14SHong Zhang Options Database Keys: 1829b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1830b5df2d14SHong Zhang block calculations (much slower) 1831b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang Notes: 1834b5df2d14SHong Zhang 1835b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1836b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1837b5df2d14SHong Zhang 1838b5df2d14SHong Zhang Storage Information: 1839b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1840b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1841b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1842b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1843b5df2d14SHong Zhang 1844b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1845b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1846b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1847b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1848b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1849b5df2d14SHong Zhang 1850b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1851b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang .vb 1854b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1855b5df2d14SHong Zhang ------------------- 1856b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1857b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1858b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1859b5df2d14SHong Zhang ------------------- 1860b5df2d14SHong Zhang .ve 1861b5df2d14SHong Zhang 1862b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1863b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18646d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18656d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1866b5df2d14SHong Zhang 18676d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18686d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1869b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1870b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1871b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1872b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1873b5df2d14SHong Zhang matrices. 1874b5df2d14SHong Zhang 1875b5df2d14SHong Zhang Level: intermediate 1876b5df2d14SHong Zhang 1877b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1878b5df2d14SHong Zhang 1879b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1880b5df2d14SHong Zhang @*/ 1881ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 1882b5df2d14SHong Zhang { 1883ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 1884b5df2d14SHong Zhang 1885b5df2d14SHong Zhang PetscFunctionBegin; 1886a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1887a23d5eceSKris Buschelman if (f) { 1888a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1889b5df2d14SHong Zhang } 1890b5df2d14SHong Zhang PetscFunctionReturn(0); 1891b5df2d14SHong Zhang } 1892b5df2d14SHong Zhang 18934a2ae208SSatish Balay #undef __FUNCT__ 18944a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1895a30f8f8cSSatish Balay /*@C 1896a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1897a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1898a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1899a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1900a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1901a30f8f8cSSatish Balay 1902a30f8f8cSSatish Balay Collective on MPI_Comm 1903a30f8f8cSSatish Balay 1904a30f8f8cSSatish Balay Input Parameters: 1905a30f8f8cSSatish Balay + comm - MPI communicator 1906a30f8f8cSSatish Balay . bs - size of blockk 1907a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1908a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1909a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1910a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1911a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1912a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1913a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1914a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1915a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1916a30f8f8cSSatish Balay submatrix (same for all local rows) 1917a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19186d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19196d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19206d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1921a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1922a30f8f8cSSatish Balay submatrix (same for all local rows). 1923a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1924a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1925a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay Output Parameter: 1928a30f8f8cSSatish Balay . A - the matrix 1929a30f8f8cSSatish Balay 1930a30f8f8cSSatish Balay Options Database Keys: 1931a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1932a30f8f8cSSatish Balay block calculations (much slower) 1933a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1934a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1935a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1936a30f8f8cSSatish Balay 1937a30f8f8cSSatish Balay Notes: 1938a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1939a30f8f8cSSatish Balay (possibly both). 1940a30f8f8cSSatish Balay 1941a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1942a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1943a30f8f8cSSatish Balay 1944a30f8f8cSSatish Balay Storage Information: 1945a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1946a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1947a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1948a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1949a30f8f8cSSatish Balay 1950a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1951a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1952a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1953a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1954a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1955a30f8f8cSSatish Balay 1956a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1957a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay .vb 1960a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1961a30f8f8cSSatish Balay ------------------- 1962a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1963a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1964a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1965a30f8f8cSSatish Balay ------------------- 1966a30f8f8cSSatish Balay .ve 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1969a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19706d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19716d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1972a30f8f8cSSatish Balay 19736d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19746d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1975a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1976a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1977a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1978a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1979a30f8f8cSSatish Balay matrices. 1980a30f8f8cSSatish Balay 1981a30f8f8cSSatish Balay Level: intermediate 1982a30f8f8cSSatish Balay 1983a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1984a30f8f8cSSatish Balay 1985a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1986a30f8f8cSSatish Balay @*/ 1987a30f8f8cSSatish Balay 1988ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 1989a30f8f8cSSatish Balay { 1990273d9f13SBarry Smith int ierr,size; 1991a30f8f8cSSatish Balay 1992a30f8f8cSSatish Balay PetscFunctionBegin; 1993b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1994273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1995273d9f13SBarry Smith if (size > 1) { 1996b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1997b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1998273d9f13SBarry Smith } else { 1999273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2000273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2001273d9f13SBarry Smith } 2002a30f8f8cSSatish Balay PetscFunctionReturn(0); 2003a30f8f8cSSatish Balay } 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay 20064a2ae208SSatish Balay #undef __FUNCT__ 20074a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 2008a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2009a30f8f8cSSatish Balay { 2010a30f8f8cSSatish Balay Mat mat; 2011a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2012a30f8f8cSSatish Balay int ierr,len=0; 2013a30f8f8cSSatish Balay 2014a30f8f8cSSatish Balay PetscFunctionBegin; 2015a30f8f8cSSatish Balay *newmat = 0; 2016b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2017b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 2018273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 2019b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2020a30f8f8cSSatish Balay a->bs = oldmat->bs; 2021a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2022a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2023a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2024a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2025a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2026a30f8f8cSSatish Balay 2027a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2028a30f8f8cSSatish Balay a->rend = oldmat->rend; 2029a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2030a30f8f8cSSatish Balay a->cend = oldmat->cend; 2031a30f8f8cSSatish Balay a->size = oldmat->size; 2032a30f8f8cSSatish Balay a->rank = oldmat->rank; 2033a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2034a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2035a30f8f8cSSatish Balay a->rowindices = 0; 2036a30f8f8cSSatish Balay a->rowvalues = 0; 2037a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2038a30f8f8cSSatish Balay a->barray = 0; 2039a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2040a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2041a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2042a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2043a30f8f8cSSatish Balay 2044a30f8f8cSSatish Balay /* hash table stuff */ 2045a30f8f8cSSatish Balay a->ht = 0; 2046a30f8f8cSSatish Balay a->hd = 0; 2047a30f8f8cSSatish Balay a->ht_size = 0; 2048a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2049a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2050a30f8f8cSSatish Balay a->ht_total_ct = 0; 2051a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2052a30f8f8cSSatish Balay 205382502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 2054b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 2055a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 2056a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 2057a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2058a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2059a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2060a30f8f8cSSatish Balay if (oldmat->colmap) { 2061a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2062a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2063a30f8f8cSSatish Balay #else 206482502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2065b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2066a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2067a30f8f8cSSatish Balay #endif 2068a30f8f8cSSatish Balay } else a->colmap = 0; 2069a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 207082502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2071b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2072a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2073a30f8f8cSSatish Balay } else a->garray = 0; 2074a30f8f8cSSatish Balay 2075a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2076b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2077a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2078a30f8f8cSSatish Balay 2079b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2080a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2081b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2082a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2083b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2084b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2085a30f8f8cSSatish Balay *newmat = mat; 2086a30f8f8cSSatish Balay PetscFunctionReturn(0); 2087a30f8f8cSSatish Balay } 2088a30f8f8cSSatish Balay 2089a30f8f8cSSatish Balay #include "petscsys.h" 2090a30f8f8cSSatish Balay 20914a2ae208SSatish Balay #undef __FUNCT__ 20924a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2093b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 2094a30f8f8cSSatish Balay { 2095a30f8f8cSSatish Balay Mat A; 2096a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 209787828ca2SBarry Smith PetscScalar *vals,*buf; 2098a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2099a30f8f8cSSatish Balay MPI_Status status; 2100a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2101a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2102a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2103a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2104a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2105a30f8f8cSSatish Balay 2106a30f8f8cSSatish Balay PetscFunctionBegin; 2107b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2108a30f8f8cSSatish Balay 2109a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay if (!rank) { 2112b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2113a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2114552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2115a30f8f8cSSatish Balay if (header[3] < 0) { 211629bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2117a30f8f8cSSatish Balay } 2118a30f8f8cSSatish Balay } 2119a30f8f8cSSatish Balay 2120a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2121a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2122a30f8f8cSSatish Balay 212329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2124a30f8f8cSSatish Balay 2125a30f8f8cSSatish Balay /* 2126a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2127a30f8f8cSSatish Balay divisible by the blocksize 2128a30f8f8cSSatish Balay */ 2129a30f8f8cSSatish Balay Mbs = M/bs; 2130a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2131a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2132a30f8f8cSSatish Balay else Mbs++; 2133a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2134b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2135a30f8f8cSSatish Balay } 2136a30f8f8cSSatish Balay 2137a30f8f8cSSatish Balay /* determine ownership of all rows */ 2138a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2139a30f8f8cSSatish Balay m = mbs*bs; 2140b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2141a30f8f8cSSatish Balay browners = rowners + size + 1; 2142a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2143a30f8f8cSSatish Balay rowners[0] = 0; 2144a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2145a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2146a30f8f8cSSatish Balay rstart = rowners[rank]; 2147a30f8f8cSSatish Balay rend = rowners[rank+1]; 2148a30f8f8cSSatish Balay 2149a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 215082502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay if (!rank) { 2152b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 215582502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2157a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2158a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay } else { 2160a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay } 2162a30f8f8cSSatish Balay 21630222edb1SHong Zhang if (!rank) { /* procs[0] */ 2164a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 216582502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2167a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2168a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2169a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2170a30f8f8cSSatish Balay } 2171a30f8f8cSSatish Balay } 2172a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay 2174a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2175a30f8f8cSSatish Balay maxnz = 0; 2176a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2177a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2178a30f8f8cSSatish Balay } 217982502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay 2181a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2182a30f8f8cSSatish Balay nz = procsnz[0]; 218382502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2184a30f8f8cSSatish Balay mycols = ibuf; 2185a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2186a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2188a30f8f8cSSatish Balay 2189a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2190a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2191a30f8f8cSSatish Balay nz = procsnz[i]; 2192a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay } 2195a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2196a30f8f8cSSatish Balay if (size != 1) { 2197a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2198a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2200a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay } 2202a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22030222edb1SHong Zhang } else { /* procs[i], i>0 */ 2204a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2205a30f8f8cSSatish Balay nz = 0; 2206a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2207a30f8f8cSSatish Balay nz += locrowlens[i]; 2208a30f8f8cSSatish Balay } 220982502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay mycols = ibuf; 2211a30f8f8cSSatish Balay /* receive message of column indices*/ 2212a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 221429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2215a30f8f8cSSatish Balay } 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 221882502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 222082502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2222a30f8f8cSSatish Balay masked1 = mask + Mbs; 2223a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2224a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2225a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2226a30f8f8cSSatish Balay dcount = 0; 2227a30f8f8cSSatish Balay odcount = 0; 2228a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2229a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2230a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22310222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2232a30f8f8cSSatish Balay if (!mask[tmp]) { 2233a30f8f8cSSatish Balay mask[tmp] = 1; 22340222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22350222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2236a30f8f8cSSatish Balay } 2237a30f8f8cSSatish Balay } 2238a30f8f8cSSatish Balay rowcount++; 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay 22410222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22420222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2243a30f8f8cSSatish Balay 2244a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2245a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2246a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2247a30f8f8cSSatish Balay } 2248a30f8f8cSSatish Balay 2249a30f8f8cSSatish Balay /* create our matrix */ 225022191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 225122191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 225222191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2253273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2254a30f8f8cSSatish Balay 2255a30f8f8cSSatish Balay if (!rank) { 225687828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2257a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2258a30f8f8cSSatish Balay nz = procsnz[0]; 2259a30f8f8cSSatish Balay vals = buf; 2260a30f8f8cSSatish Balay mycols = ibuf; 2261a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2262a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2264a30f8f8cSSatish Balay 2265a30f8f8cSSatish Balay /* insert into matrix */ 2266a30f8f8cSSatish Balay jj = rstart*bs; 2267a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22687e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2269a30f8f8cSSatish Balay mycols += locrowlens[i]; 2270a30f8f8cSSatish Balay vals += locrowlens[i]; 2271a30f8f8cSSatish Balay jj++; 2272a30f8f8cSSatish Balay } 22737e06b45fSHong Zhang 2274a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2275a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2276a30f8f8cSSatish Balay nz = procsnz[i]; 2277a30f8f8cSSatish Balay vals = buf; 2278a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2279a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay } 2281a30f8f8cSSatish Balay /* the last proc */ 2282a30f8f8cSSatish Balay if (size != 1){ 2283a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2284a30f8f8cSSatish Balay vals = buf; 2285a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2286a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2287a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2288a30f8f8cSSatish Balay } 2289a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22907e06b45fSHong Zhang 2291a30f8f8cSSatish Balay } else { 2292a30f8f8cSSatish Balay /* receive numeric values */ 229387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay /* receive message of values*/ 2296a30f8f8cSSatish Balay vals = buf; 2297a30f8f8cSSatish Balay mycols = ibuf; 2298a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2299a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 230029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2301a30f8f8cSSatish Balay 2302a30f8f8cSSatish Balay /* insert into matrix */ 2303a30f8f8cSSatish Balay jj = rstart*bs; 2304a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2305a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay mycols += locrowlens[i]; 2307a30f8f8cSSatish Balay vals += locrowlens[i]; 2308a30f8f8cSSatish Balay jj++; 2309a30f8f8cSSatish Balay } 2310a30f8f8cSSatish Balay } 23117e06b45fSHong Zhang 2312a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2313a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2314a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2315a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2316a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2317a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2318a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2319a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 232022191285SKris Buschelman *newmat = A; 2321a30f8f8cSSatish Balay PetscFunctionReturn(0); 2322a30f8f8cSSatish Balay } 2323a30f8f8cSSatish Balay 23244a2ae208SSatish Balay #undef __FUNCT__ 23254a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2326a30f8f8cSSatish Balay /*@ 2327a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2328a30f8f8cSSatish Balay 2329a30f8f8cSSatish Balay Input Parameters: 2330a30f8f8cSSatish Balay . mat - the matrix 2331a30f8f8cSSatish Balay . fact - factor 2332a30f8f8cSSatish Balay 2333a30f8f8cSSatish Balay Collective on Mat 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay Level: advanced 2336a30f8f8cSSatish Balay 2337a30f8f8cSSatish Balay Notes: 2338a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2339a30f8f8cSSatish Balay 2340a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2341a30f8f8cSSatish Balay 2342a30f8f8cSSatish Balay .seealso: MatSetOption() 2343a30f8f8cSSatish Balay @*/ 2344a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2345a30f8f8cSSatish Balay { 2346a30f8f8cSSatish Balay PetscFunctionBegin; 234729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 234896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2349a30f8f8cSSatish Balay } 235024d5174aSHong Zhang 23514a2ae208SSatish Balay #undef __FUNCT__ 23524a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 235324d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 235424d5174aSHong Zhang { 235524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2356f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2357ca54ac64SHong Zhang PetscReal atmp; 235887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2359ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2360154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 236187828ca2SBarry Smith PetscScalar *va; 23628a1c53f2SBarry Smith MatScalar *ba; 2363f4c0e9e4SHong Zhang MPI_Status stat; 236424d5174aSHong Zhang 236524d5174aSHong Zhang PetscFunctionBegin; 2366d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2367f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2368f4c0e9e4SHong Zhang 236956faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 237056faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2371f4c0e9e4SHong Zhang 2372f4c0e9e4SHong Zhang bs = a->bs; 2373f4c0e9e4SHong Zhang mbs = a->mbs; 2374f4c0e9e4SHong Zhang Mbs = a->Mbs; 2375f4c0e9e4SHong Zhang ba = b->a; 2376f4c0e9e4SHong Zhang bi = b->i; 2377f4c0e9e4SHong Zhang bj = b->j; 2378ca54ac64SHong Zhang /* 237956faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 238056faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2381ca54ac64SHong Zhang */ 2382f4c0e9e4SHong Zhang 2383f4c0e9e4SHong Zhang /* find ownerships */ 2384f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2385f4c0e9e4SHong Zhang /* 238604d41228SHong Zhang if (!rank){ 238704d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2388f4c0e9e4SHong Zhang } 2389f4c0e9e4SHong Zhang */ 2390f4c0e9e4SHong Zhang 2391f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 239282502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2393ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2394f4c0e9e4SHong Zhang 2395f4c0e9e4SHong Zhang /* row_max for B */ 2396b8475685SHong Zhang if (rank != size-1){ 2397f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2398f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2399f4c0e9e4SHong Zhang brow = bs*i; 2400f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2401f4c0e9e4SHong Zhang bcol = bs*(*bj); 2402f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2403ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 240404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2405ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2406f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2407f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2408ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2409f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2410ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2411f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2412f4c0e9e4SHong Zhang } 2413f4c0e9e4SHong Zhang } 2414f4c0e9e4SHong Zhang bj++; 2415f4c0e9e4SHong Zhang } 2416f4c0e9e4SHong Zhang } 241704d41228SHong Zhang /* 241804d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 241904d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 242004d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 242104d41228SHong Zhang */ 2422f4c0e9e4SHong Zhang 2423f4c0e9e4SHong Zhang /* send values to its owners */ 2424f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2425f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2426ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 242756faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2428ca54ac64SHong Zhang /* 242956faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 243056faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2431ca54ac64SHong Zhang */ 2432ca54ac64SHong Zhang } 2433f4c0e9e4SHong Zhang } 2434f4c0e9e4SHong Zhang 2435f4c0e9e4SHong Zhang /* receive values */ 2436ca54ac64SHong Zhang if (rank){ 2437f4c0e9e4SHong Zhang rvalues = work; 2438ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2439f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 244056faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2441f4c0e9e4SHong Zhang /* process values */ 2442f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2443ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2444f4c0e9e4SHong Zhang } 2445ca54ac64SHong Zhang /* 244656faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 244756faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2448ca54ac64SHong Zhang */ 2449f4c0e9e4SHong Zhang } 2450ca54ac64SHong Zhang } 2451f4c0e9e4SHong Zhang 2452f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2453ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 245424d5174aSHong Zhang PetscFunctionReturn(0); 245524d5174aSHong Zhang } 24562798e883SHong Zhang 24572798e883SHong Zhang #undef __FUNCT__ 24582798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2459c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 24602798e883SHong Zhang { 24612798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2462ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2463ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2464ffe4fb16SHong Zhang Vec bb1; 2465ffe4fb16SHong Zhang 2466ffe4fb16SHong Zhang PetscFunctionBegin; 2467ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2468ffe4fb16SHong Zhang if (bs > 1) 2469ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2470ffe4fb16SHong Zhang 2471ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2472ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2473ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2474ffe4fb16SHong Zhang its--; 2475ffe4fb16SHong Zhang } 2476ffe4fb16SHong Zhang 2477ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2478ffe4fb16SHong Zhang while (its--){ 2479ffe4fb16SHong Zhang 2480ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2481ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2482ffe4fb16SHong Zhang 2483ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2484ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2485ffe4fb16SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2486ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2487ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2488ffe4fb16SHong Zhang 2489ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2490ffe4fb16SHong Zhang 2491ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2492ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2493ffe4fb16SHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2494ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2495ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2496ffe4fb16SHong Zhang 2497ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2498ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2499ffe4fb16SHong Zhang 2500ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2501ffe4fb16SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2502ffe4fb16SHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2503ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2504ffe4fb16SHong Zhang 2505ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2506ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2507ffe4fb16SHong Zhang 2508ffe4fb16SHong Zhang /* local diagonal sweep */ 2509ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2510ffe4fb16SHong Zhang } 2511ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2512ffe4fb16SHong Zhang } else { 2513ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2514ffe4fb16SHong Zhang } 2515ffe4fb16SHong Zhang PetscFunctionReturn(0); 2516ffe4fb16SHong Zhang } 2517ffe4fb16SHong Zhang 2518ffe4fb16SHong Zhang #undef __FUNCT__ 2519ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2520ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2521ffe4fb16SHong Zhang { 2522ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25232798e883SHong Zhang int ierr; 2524d05c616dSSatish Balay PetscScalar mone=-1.0; 25252798e883SHong Zhang Vec lvec1,bb1; 25262798e883SHong Zhang 25272798e883SHong Zhang PetscFunctionBegin; 252891723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25292798e883SHong Zhang if (mat->bs > 1) 25302798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25312798e883SHong Zhang 2532c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25332798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2534bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25352798e883SHong Zhang its--; 25362798e883SHong Zhang } 25372798e883SHong Zhang 25382798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25392798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25402798e883SHong Zhang while (its--){ 25412798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25422798e883SHong Zhang 25432798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25442798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25452798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25462798e883SHong Zhang 25472798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25482798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25492798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25502798e883SHong Zhang 25512798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25522798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25532798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25542798e883SHong Zhang 25552798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25562798e883SHong Zhang 2557c14dc6b6SHong Zhang /* diagonal sweep */ 2558bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25592798e883SHong Zhang } 25602798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25612798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2562c14dc6b6SHong Zhang } else { 2563c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2564c14dc6b6SHong Zhang } 25652798e883SHong Zhang PetscFunctionReturn(0); 25662798e883SHong Zhang } 25672798e883SHong Zhang 2568