1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237e56f5c9eSBarry Smith A->nonzerostate++; \ 238a30f8f8cSSatish Balay a_noinsert:; \ 239a30f8f8cSSatish Balay ailen[brow] = nrow; \ 240a8f51744SPierre Jolivet } while (0) 241e5e170daSBarry Smith 242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 243a8f51744SPierre Jolivet do { \ 244a30f8f8cSSatish Balay brow = row / bs; \ 2459371c9d4SSatish Balay rp = bj + bi[brow]; \ 2469371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2479371c9d4SSatish Balay rmax = bimax[brow]; \ 2489371c9d4SSatish Balay nrow = bilen[brow]; \ 249a30f8f8cSSatish Balay bcol = col / bs; \ 2509371c9d4SSatish Balay ridx = row % bs; \ 2519371c9d4SSatish Balay cidx = col % bs; \ 2529371c9d4SSatish Balay low = 0; \ 2539371c9d4SSatish Balay high = nrow; \ 254a30f8f8cSSatish Balay while (high - low > 3) { \ 255a30f8f8cSSatish Balay t = (low + high) / 2; \ 256a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 257a30f8f8cSSatish Balay else low = t; \ 258a30f8f8cSSatish Balay } \ 259a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 260a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 261a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 262a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 263a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 264a30f8f8cSSatish Balay else *bap = value; \ 265a30f8f8cSSatish Balay goto b_noinsert; \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay } \ 268a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2695f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 270fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 271a30f8f8cSSatish Balay N = nrow++ - 1; \ 272a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 276a30f8f8cSSatish Balay rp[_i] = bcol; \ 277a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 278e56f5c9eSBarry Smith B->nonzerostate++; \ 279a30f8f8cSSatish Balay b_noinsert:; \ 280a30f8f8cSSatish Balay bilen[brow] = nrow; \ 281a8f51744SPierre Jolivet } while (0) 282a30f8f8cSSatish Balay 283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 284da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 285a30f8f8cSSatish Balay */ 28666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 287d71ae5a4SJacob Faibussowitsch { 288a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 289a30f8f8cSSatish Balay MatScalar value; 290ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2911302d50aSBarry Smith PetscInt i, j, row, col; 292d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 293d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 294d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 300a30f8f8cSSatish Balay MatScalar *aa = a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 305a30f8f8cSSatish Balay MatScalar *ba = b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3081302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap, *bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3120298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3130298fd71SBarry Smith MatScalar *v_loc = NULL; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay if (!baij->donotstash) { 31759ffdab8SBarry Smith if (n > baij->n_loc) { 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32226fbe8dcSKarl Rupp 32359ffdab8SBarry Smith baij->n_loc = n; 32459ffdab8SBarry Smith } 32559ffdab8SBarry Smith in_loc = baij->in_loc; 32659ffdab8SBarry Smith v_loc = baij->v_loc; 327a30f8f8cSSatish Balay } 328a30f8f8cSSatish Balay 329a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 330a30f8f8cSSatish Balay if (im[i] < 0) continue; 3315f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 332a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 333a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 334a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33501b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33601b2bd88SHong Zhang if (a->ignore_ltriangular) { 33701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33901b2bd88SHong Zhang } 340a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 341a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3429371c9d4SSatish Balay brow = row / bs; 3439371c9d4SSatish Balay bcol = col / bs; 344a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 345db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 346db4deed7SKarl Rupp else value = v[i + j * m]; 347d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3489566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 349f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 350f7d195e4SLawrence Mitchell continue; 351f7d195e4SLawrence Mitchell } else { 352f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 353f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 354a30f8f8cSSatish Balay if (mat->was_assembled) { 35548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 357eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35871730473SSatish Balay col = col - 1; 359a30f8f8cSSatish Balay #else 36071730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 361a30f8f8cSSatish Balay #endif 362f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 364a30f8f8cSSatish Balay col = in[j]; 365a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 366a30f8f8cSSatish Balay B = baij->B; 367a30f8f8cSSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 3689371c9d4SSatish Balay bimax = b->imax; 3699371c9d4SSatish Balay bi = b->i; 3709371c9d4SSatish Balay bilen = b->ilen; 3719371c9d4SSatish Balay bj = b->j; 372a30f8f8cSSatish Balay ba = b->a; 37371730473SSatish Balay } else col += in[j] % bs; 374a30f8f8cSSatish Balay } else col = in[j]; 375db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 376db4deed7SKarl Rupp else value = v[i + j * m]; 377d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3789566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay } else { /* off processor entry */ 3825f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 383a30f8f8cSSatish Balay if (!baij->donotstash) { 3845080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 385a30f8f8cSSatish Balay n_loc = 0; 386a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 387f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 388a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 389a30f8f8cSSatish Balay if (roworiented) { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 391a30f8f8cSSatish Balay } else { 392a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay n_loc++; 395a30f8f8cSSatish Balay } 3969566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 404d71ae5a4SJacob Faibussowitsch { 40536bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 41036bd2089SBarry Smith const PetscScalar *value = v; 41136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41236bd2089SBarry Smith 41336bd2089SBarry Smith PetscFunctionBegin; 41436bd2089SBarry Smith if (col < row) { 4153ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41636bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41736bd2089SBarry Smith } 41836bd2089SBarry Smith rp = aj + ai[row]; 41936bd2089SBarry Smith ap = aa + bs2 * ai[row]; 42036bd2089SBarry Smith rmax = imax[row]; 42136bd2089SBarry Smith nrow = ailen[row]; 42236bd2089SBarry Smith value = v; 42336bd2089SBarry Smith low = 0; 42436bd2089SBarry Smith high = nrow; 42536bd2089SBarry Smith 42636bd2089SBarry Smith while (high - low > 7) { 42736bd2089SBarry Smith t = (low + high) / 2; 42836bd2089SBarry Smith if (rp[t] > col) high = t; 42936bd2089SBarry Smith else low = t; 43036bd2089SBarry Smith } 43136bd2089SBarry Smith for (i = low; i < high; i++) { 43236bd2089SBarry Smith if (rp[i] > col) break; 43336bd2089SBarry Smith if (rp[i] == col) { 43436bd2089SBarry Smith bap = ap + bs2 * i; 43536bd2089SBarry Smith if (roworiented) { 43636bd2089SBarry Smith if (is == ADD_VALUES) { 43736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 438ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43936bd2089SBarry Smith } 44036bd2089SBarry Smith } else { 44136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 442ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44336bd2089SBarry Smith } 44436bd2089SBarry Smith } 44536bd2089SBarry Smith } else { 44636bd2089SBarry Smith if (is == ADD_VALUES) { 44736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 448ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44936bd2089SBarry Smith } 45036bd2089SBarry Smith } else { 45136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 452ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45336bd2089SBarry Smith } 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith goto noinsert2; 45736bd2089SBarry Smith } 45836bd2089SBarry Smith } 45936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4605f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 46136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4629371c9d4SSatish Balay N = nrow++ - 1; 4639371c9d4SSatish Balay high++; 46436bd2089SBarry Smith /* shift up all the later entries in this row */ 4659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4669566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46736bd2089SBarry Smith rp[i] = col; 46836bd2089SBarry Smith bap = ap + bs2 * i; 46936bd2089SBarry Smith if (roworiented) { 47036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 471ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47236bd2089SBarry Smith } 47336bd2089SBarry Smith } else { 47436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 475ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } 47836bd2089SBarry Smith noinsert2:; 47936bd2089SBarry Smith ailen[row] = nrow; 4803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48136bd2089SBarry Smith } 48236bd2089SBarry Smith 48336bd2089SBarry Smith /* 48436bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48536bd2089SBarry Smith */ 486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 487d71ae5a4SJacob Faibussowitsch { 48836bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48936bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 49036bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 49136bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49236bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49336bd2089SBarry Smith const PetscScalar *value = v; 49436bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49536bd2089SBarry Smith 49636bd2089SBarry Smith PetscFunctionBegin; 49736bd2089SBarry Smith rp = aj + ai[row]; 49836bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49936bd2089SBarry Smith rmax = imax[row]; 50036bd2089SBarry Smith nrow = ailen[row]; 50136bd2089SBarry Smith low = 0; 50236bd2089SBarry Smith high = nrow; 50336bd2089SBarry Smith value = v; 50436bd2089SBarry Smith while (high - low > 7) { 50536bd2089SBarry Smith t = (low + high) / 2; 50636bd2089SBarry Smith if (rp[t] > col) high = t; 50736bd2089SBarry Smith else low = t; 50836bd2089SBarry Smith } 50936bd2089SBarry Smith for (i = low; i < high; i++) { 51036bd2089SBarry Smith if (rp[i] > col) break; 51136bd2089SBarry Smith if (rp[i] == col) { 51236bd2089SBarry Smith bap = ap + bs2 * i; 51336bd2089SBarry Smith if (roworiented) { 51436bd2089SBarry Smith if (is == ADD_VALUES) { 51536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 516ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } else { 51936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 520ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 52136bd2089SBarry Smith } 52236bd2089SBarry Smith } 52336bd2089SBarry Smith } else { 52436bd2089SBarry Smith if (is == ADD_VALUES) { 52536bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 526ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52736bd2089SBarry Smith bap += bs; 52836bd2089SBarry Smith } 52936bd2089SBarry Smith } else { 53036bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 531ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53236bd2089SBarry Smith bap += bs; 53336bd2089SBarry Smith } 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith goto noinsert2; 53736bd2089SBarry Smith } 53836bd2089SBarry Smith } 53936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5405f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 54136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5429371c9d4SSatish Balay N = nrow++ - 1; 5439371c9d4SSatish Balay high++; 54436bd2089SBarry Smith /* shift up all the later entries in this row */ 5459566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5469566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54736bd2089SBarry Smith rp[i] = col; 54836bd2089SBarry Smith bap = ap + bs2 * i; 54936bd2089SBarry Smith if (roworiented) { 55036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 551ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55236bd2089SBarry Smith } 55336bd2089SBarry Smith } else { 55436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 555ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55636bd2089SBarry Smith } 55736bd2089SBarry Smith } 55836bd2089SBarry Smith noinsert2:; 55936bd2089SBarry Smith ailen[row] = nrow; 5603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56136bd2089SBarry Smith } 56236bd2089SBarry Smith 56336bd2089SBarry Smith /* 56436bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56536bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56636bd2089SBarry Smith */ 56766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 568d71ae5a4SJacob Faibussowitsch { 5690880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 570f15d580aSBarry Smith const MatScalar *value; 571f15d580aSBarry Smith MatScalar *barray = baij->barray; 572ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 573899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 574476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 575476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5760880e062SHong Zhang 577a30f8f8cSSatish Balay PetscFunctionBegin; 5780880e062SHong Zhang if (!barray) { 5799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5800880e062SHong Zhang baij->barray = barray; 5810880e062SHong Zhang } 5820880e062SHong Zhang 5830880e062SHong Zhang if (roworiented) { 5840880e062SHong Zhang stepval = (n - 1) * bs; 5850880e062SHong Zhang } else { 5860880e062SHong Zhang stepval = (m - 1) * bs; 5870880e062SHong Zhang } 5880880e062SHong Zhang for (i = 0; i < m; i++) { 5890880e062SHong Zhang if (im[i] < 0) continue; 5906bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5910880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5920880e062SHong Zhang row = im[i] - rstart; 5930880e062SHong Zhang for (j = 0; j < n; j++) { 594f3f98c53SJed Brown if (im[i] > in[j]) { 595f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 596e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 597f3f98c53SJed Brown } 5980880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5990880e062SHong Zhang if ((roworiented) && (n == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 6010880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 602f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6030880e062SHong Zhang } else { /* Here a copy is required */ 6040880e062SHong Zhang if (roworiented) { 6050880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6060880e062SHong Zhang } else { 6070880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6080880e062SHong Zhang } 6090880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 610ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6110880e062SHong Zhang } 6120880e062SHong Zhang barray -= bs2; 6130880e062SHong Zhang } 6140880e062SHong Zhang 6150880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6160880e062SHong Zhang col = in[j] - cstart; 6179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 618f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 619f7d195e4SLawrence Mitchell continue; 620f7d195e4SLawrence Mitchell } else { 621f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6220880e062SHong Zhang if (mat->was_assembled) { 62348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6240880e062SHong Zhang 6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6260880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6279371c9d4SSatish Balay { 6289371c9d4SSatish Balay PetscInt data; 629eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 63008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6310880e062SHong Zhang } 6320880e062SHong Zhang #else 63308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6340880e062SHong Zhang #endif 6350880e062SHong Zhang #endif 6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 637eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 6380880e062SHong Zhang col = (col - 1) / bs; 6390880e062SHong Zhang #else 6400880e062SHong Zhang col = (baij->colmap[in[j]] - 1) / bs; 6410880e062SHong Zhang #endif 642f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6439566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6440880e062SHong Zhang col = in[j]; 6450880e062SHong Zhang } 64626fbe8dcSKarl Rupp } else col = in[j]; 6479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6480880e062SHong Zhang } 6490880e062SHong Zhang } 6500880e062SHong Zhang } else { 6515f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6520880e062SHong Zhang if (!baij->donotstash) { 6530880e062SHong Zhang if (roworiented) { 6549566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6550880e062SHong Zhang } else { 6569566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6570880e062SHong Zhang } 6580880e062SHong Zhang } 6590880e062SHong Zhang } 6600880e062SHong Zhang } 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 66466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 665d71ae5a4SJacob Faibussowitsch { 666f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 667d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 668d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay PetscFunctionBegin; 671a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 67254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 67354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 674a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 675a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 676a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 67754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 679a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 680a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 682a30f8f8cSSatish Balay } else { 68348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 685eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 686a30f8f8cSSatish Balay data--; 687a30f8f8cSSatish Balay #else 688a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 689a30f8f8cSSatish Balay #endif 690a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 691a30f8f8cSSatish Balay else { 692a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6939566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay } 697f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 698a30f8f8cSSatish Balay } 6993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay 70266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 703d71ae5a4SJacob Faibussowitsch { 704a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 705a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay PetscFunctionBegin; 708a30f8f8cSSatish Balay if (baij->size == 1) { 7099566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 710a30f8f8cSSatish Balay } else { 711a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 7129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7139566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7149371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7159371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7169566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7179371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7189371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7220b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7230b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7240b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 7250b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 726899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 727d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7280b8dc8d2SHong Zhang MatScalar *v; 7290b8dc8d2SHong Zhang 7309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 7319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7320b8dc8d2SHong Zhang /* Amat */ 7339371c9d4SSatish Balay v = amat->a; 7349371c9d4SSatish Balay jj = amat->j; 7350b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7360b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7370b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7380b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7399371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7409371c9d4SSatish Balay jj++; 7410b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7420b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7439371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7449371c9d4SSatish Balay v++; 7450b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7460b8dc8d2SHong Zhang /* non-diagonal block */ 7470b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7480b8dc8d2SHong Zhang } 7490b8dc8d2SHong Zhang } 7500b8dc8d2SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7520b8dc8d2SHong Zhang } 7530b8dc8d2SHong Zhang /* Bmat */ 7549371c9d4SSatish Balay v = bmat->a; 7559371c9d4SSatish Balay jj = bmat->j; 7560b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7570b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7580b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7590b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7609371c9d4SSatish Balay gcol = bs * garray[*jj]; 7619371c9d4SSatish Balay jj++; 7620b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7630b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7649371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7659371c9d4SSatish Balay v++; 7660b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7670b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7680b8dc8d2SHong Zhang } 7690b8dc8d2SHong Zhang } 7700b8dc8d2SHong Zhang } 7719566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7720b8dc8d2SHong Zhang } 7731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7740b8dc8d2SHong Zhang *norm = 0.0; 775d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7760b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7770b8dc8d2SHong Zhang } 7789566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 779f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 780a30f8f8cSSatish Balay } 7813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay 78466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 785d71ae5a4SJacob Faibussowitsch { 786a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7871302d50aSBarry Smith PetscInt nstash, reallocs; 788a30f8f8cSSatish Balay 789a30f8f8cSSatish Balay PetscFunctionBegin; 7903ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 791a30f8f8cSSatish Balay 7929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7949566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7959566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7969566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7979566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay 80166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 802d71ae5a4SJacob Faibussowitsch { 803a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 804a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 80513f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 806e44c0bd4SBarry Smith PetscInt *row, *col; 807ace3abfcSBarry Smith PetscBool other_disassembled; 80813f74950SBarry Smith PetscMPIInt n; 809ace3abfcSBarry Smith PetscBool r1, r2, r3; 810a30f8f8cSSatish Balay MatScalar *val; 811a30f8f8cSSatish Balay 81291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 813a30f8f8cSSatish Balay PetscFunctionBegin; 8144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 815a30f8f8cSSatish Balay while (1) { 8169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 817a30f8f8cSSatish Balay if (!flg) break; 818a30f8f8cSSatish Balay 819a30f8f8cSSatish Balay for (i = 0; i < n;) { 820a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 82126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 82226fbe8dcSKarl Rupp if (row[j] != rstart) break; 82326fbe8dcSKarl Rupp } 824a30f8f8cSSatish Balay if (j < n) ncols = j - i; 825a30f8f8cSSatish Balay else ncols = n - i; 826a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 828a30f8f8cSSatish Balay i = j; 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay } 8319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 832a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8335e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 834a30f8f8cSSatish Balay restore the original flags */ 835a30f8f8cSSatish Balay r1 = baij->roworiented; 836a30f8f8cSSatish Balay r2 = a->roworiented; 83791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 83826fbe8dcSKarl Rupp 839a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 840a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 84126fbe8dcSKarl Rupp 84291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 843a30f8f8cSSatish Balay while (1) { 8449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 845a30f8f8cSSatish Balay if (!flg) break; 846a30f8f8cSSatish Balay 847a30f8f8cSSatish Balay for (i = 0; i < n;) { 848a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 84926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 85026fbe8dcSKarl Rupp if (row[j] != rstart) break; 85126fbe8dcSKarl Rupp } 852a30f8f8cSSatish Balay if (j < n) ncols = j - i; 853a30f8f8cSSatish Balay else ncols = n - i; 8549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 855a30f8f8cSSatish Balay i = j; 856a30f8f8cSSatish Balay } 857a30f8f8cSSatish Balay } 8589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 85926fbe8dcSKarl Rupp 860a30f8f8cSSatish Balay baij->roworiented = r1; 861a30f8f8cSSatish Balay a->roworiented = r2; 86226fbe8dcSKarl Rupp 86391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 871a30f8f8cSSatish Balay /* 872a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 873a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 874a30f8f8cSSatish Balay */ 875a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 87748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay 8809371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 883a30f8f8cSSatish Balay 8849566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 88526fbe8dcSKarl Rupp 886f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8874f9cfa9eSBarry Smith 8884f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 889f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 890e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 892e56f5c9eSBarry Smith } 8933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8979804daf3SBarry Smith #include <petscdraw.h> 898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 899d71ae5a4SJacob Faibussowitsch { 900a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 901d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 9027da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 903ace3abfcSBarry Smith PetscBool iascii, isdraw; 904b0a32e0cSBarry Smith PetscViewer sviewer; 905f3ef73ceSBarry Smith PetscViewerFormat format; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 9089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 91032077d6dSBarry Smith if (iascii) { 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 912456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 913a30f8f8cSSatish Balay MatInfo info; 9149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9179371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9189371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9199566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9269566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 928fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 931c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay } 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay if (isdraw) { 937b0a32e0cSBarry Smith PetscDraw draw; 938ace3abfcSBarry Smith PetscBool isnull; 9399566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9409566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9413ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 942a30f8f8cSSatish Balay } 943a30f8f8cSSatish Balay 9447da1fb6eSBarry Smith { 945a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 946a30f8f8cSSatish Balay Mat A; 94765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 94865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 949d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 950a30f8f8cSSatish Balay MatScalar *a; 9513e219373SBarry Smith const char *matname; 952a30f8f8cSSatish Balay 953f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 955dd400576SPatrick Sanan if (rank == 0) { 9569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 957a30f8f8cSSatish Balay } else { 9589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 959a30f8f8cSSatish Balay } 9609566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9619566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9629566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay /* copy over the A part */ 96565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9669371c9d4SSatish Balay ai = Aloc->i; 9679371c9d4SSatish Balay aj = Aloc->j; 9689371c9d4SSatish Balay a = Aloc->a; 9699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 970a30f8f8cSSatish Balay 971a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 972e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 974a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 975e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 976a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 97826fbe8dcSKarl Rupp col++; 97926fbe8dcSKarl Rupp a += bs; 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay /* copy over the B part */ 98465d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9859371c9d4SSatish Balay ai = Bloc->i; 9869371c9d4SSatish Balay aj = Bloc->j; 9879371c9d4SSatish Balay a = Bloc->a; 988a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 989e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 99026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 991a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 992a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 993a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 99526fbe8dcSKarl Rupp col++; 99626fbe8dcSKarl Rupp a += bs; 997a30f8f8cSSatish Balay } 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay } 10009566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 1003a30f8f8cSSatish Balay /* 1004a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 1005b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 1006a30f8f8cSSatish Balay */ 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 100823a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1009dd400576SPatrick Sanan if (rank == 0) { 1010f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 1011f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 1012a30f8f8cSSatish Balay } 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1015a30f8f8cSSatish Balay } 10163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1017a30f8f8cSSatish Balay } 1018a30f8f8cSSatish Balay 1019618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1020618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1021d1654148SHong Zhang 102266976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1023d71ae5a4SJacob Faibussowitsch { 1024ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1025a30f8f8cSSatish Balay 1026a30f8f8cSSatish Balay PetscFunctionBegin; 10279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1031d1654148SHong Zhang if (iascii || isdraw || issocket) { 10329566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10331baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1035a30f8f8cSSatish Balay } 1036a30f8f8cSSatish Balay 1037*789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1038*789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1039d71ae5a4SJacob Faibussowitsch { 1040547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1041eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10426de40e93SBarry Smith PetscScalar *from; 10436de40e93SBarry Smith const PetscScalar *x; 1044547795f9SHong Zhang 1045547795f9SHong Zhang PetscFunctionBegin; 1046547795f9SHong Zhang /* diagonal part */ 10479566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1048629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1049629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1050629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1051547795f9SHong Zhang 1052547795f9SHong Zhang /* subdiagonal part */ 10535f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1055547795f9SHong Zhang 1056547795f9SHong Zhang /* copy x into the vec slvec0 */ 10579566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1059547795f9SHong Zhang 10609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1063547795f9SHong Zhang 10649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1066547795f9SHong Zhang /* supperdiagonal part */ 10679566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1069547795f9SHong Zhang } 1070*789afff4SPierre Jolivet #endif 1071547795f9SHong Zhang 107266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1073d71ae5a4SJacob Faibussowitsch { 1074a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1075eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1076d9ca1df4SBarry Smith PetscScalar *from; 1077d9ca1df4SBarry Smith const PetscScalar *x; 1078a9d4b620SHong Zhang 1079a9d4b620SHong Zhang PetscFunctionBegin; 1080a9d4b620SHong Zhang /* diagonal part */ 10819566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1082629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1083629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1084629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1085a9d4b620SHong Zhang 1086a9d4b620SHong Zhang /* subdiagonal part */ 10879566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1088fc165ae2SBarry Smith 1089a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10909566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1092a9d4b620SHong Zhang 10939566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10949566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1096fc165ae2SBarry Smith 10979566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10989566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1099a9d4b620SHong Zhang /* supperdiagonal part */ 11009566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 11013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1102a9d4b620SHong Zhang } 1103a9d4b620SHong Zhang 110466976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 110566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1106d71ae5a4SJacob Faibussowitsch { 1107eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1108eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1109629a200eSBarry Smith PetscScalar *from; 1110eb1ec7c1SStefano Zampini const PetscScalar *x; 1111eb1ec7c1SStefano Zampini 1112eb1ec7c1SStefano Zampini PetscFunctionBegin; 1113eb1ec7c1SStefano Zampini /* diagonal part */ 11149566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1115629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1116629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1117eb1ec7c1SStefano Zampini 1118eb1ec7c1SStefano Zampini /* subdiagonal part */ 11195f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11209566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1121eb1ec7c1SStefano Zampini 1122eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11239566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11269566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1127eb1ec7c1SStefano Zampini 11289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1131eb1ec7c1SStefano Zampini 1132eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11339566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1135eb1ec7c1SStefano Zampini } 113666976f2fSJacob Faibussowitsch #endif 1137eb1ec7c1SStefano Zampini 113866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1139d71ae5a4SJacob Faibussowitsch { 1140de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1141d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1142629a200eSBarry Smith PetscScalar *from; 1143d9ca1df4SBarry Smith const PetscScalar *x; 1144a9d4b620SHong Zhang 1145a9d4b620SHong Zhang PetscFunctionBegin; 1146a9d4b620SHong Zhang /* diagonal part */ 11479566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1148629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1149629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1150a9d4b620SHong Zhang 1151a9d4b620SHong Zhang /* subdiagonal part */ 11529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1153a9d4b620SHong Zhang 1154a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11559566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11569566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11579566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1159a9d4b620SHong Zhang 11609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1163a9d4b620SHong Zhang 1164a9d4b620SHong Zhang /* supperdiagonal part */ 11659566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1167a9d4b620SHong Zhang } 1168a9d4b620SHong Zhang 1169a30f8f8cSSatish Balay /* 1170a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1171a30f8f8cSSatish Balay diagonal block 1172a30f8f8cSSatish Balay */ 117366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1174d71ae5a4SJacob Faibussowitsch { 1175a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1176a30f8f8cSSatish Balay 1177a30f8f8cSSatish Balay PetscFunctionBegin; 117808401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11799566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay 118366976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1184d71ae5a4SJacob Faibussowitsch { 1185a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1186a30f8f8cSSatish Balay 1187a30f8f8cSSatish Balay PetscFunctionBegin; 11889566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11899566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1191a30f8f8cSSatish Balay } 1192a30f8f8cSSatish Balay 119366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1194d71ae5a4SJacob Faibussowitsch { 1195d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1196d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1197d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1198d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1199899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1200d0d4cfc2SHong Zhang 1201a30f8f8cSSatish Balay PetscFunctionBegin; 12025f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1203d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1204d0d4cfc2SHong Zhang 1205d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1206d0d4cfc2SHong Zhang /* 1207d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1208d0d4cfc2SHong Zhang */ 1209d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1210d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1211d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1212d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1213d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 121426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1215d0d4cfc2SHong Zhang } 12169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1217d0d4cfc2SHong Zhang } 1218d0d4cfc2SHong Zhang 12195f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1220d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1221d0d4cfc2SHong Zhang 12229371c9d4SSatish Balay pvA = &vworkA; 12239371c9d4SSatish Balay pcA = &cworkA; 12249371c9d4SSatish Balay pvB = &vworkB; 12259371c9d4SSatish Balay pcB = &cworkB; 12269371c9d4SSatish Balay if (!v) { 12279371c9d4SSatish Balay pvA = NULL; 12289371c9d4SSatish Balay pvB = NULL; 12299371c9d4SSatish Balay } 12309371c9d4SSatish Balay if (!idx) { 12319371c9d4SSatish Balay pcA = NULL; 12329371c9d4SSatish Balay if (!v) pcB = NULL; 12339371c9d4SSatish Balay } 12349566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12359566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1236d0d4cfc2SHong Zhang nztot = nzA + nzB; 1237d0d4cfc2SHong Zhang 1238d0d4cfc2SHong Zhang cmap = mat->garray; 1239d0d4cfc2SHong Zhang if (v || idx) { 1240d0d4cfc2SHong Zhang if (nztot) { 1241d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1242d0d4cfc2SHong Zhang PetscInt imark = -1; 1243d0d4cfc2SHong Zhang if (v) { 1244d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1245d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1246d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1247d0d4cfc2SHong Zhang else break; 1248d0d4cfc2SHong Zhang } 1249d0d4cfc2SHong Zhang imark = i; 1250d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1251d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1252d0d4cfc2SHong Zhang } 1253d0d4cfc2SHong Zhang if (idx) { 1254d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1255d0d4cfc2SHong Zhang if (imark > -1) { 1256ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1257d0d4cfc2SHong Zhang } else { 1258d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 125926fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1260d0d4cfc2SHong Zhang else break; 1261d0d4cfc2SHong Zhang } 1262d0d4cfc2SHong Zhang imark = i; 1263d0d4cfc2SHong Zhang } 1264d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1265d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1266d0d4cfc2SHong Zhang } 1267d0d4cfc2SHong Zhang } else { 1268f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1269f4259b30SLisandro Dalcin if (v) *v = NULL; 1270d0d4cfc2SHong Zhang } 1271d0d4cfc2SHong Zhang } 1272d0d4cfc2SHong Zhang *nz = nztot; 12739566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12749566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1276a30f8f8cSSatish Balay } 1277a30f8f8cSSatish Balay 127866976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1279d71ae5a4SJacob Faibussowitsch { 1280a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay PetscFunctionBegin; 12835f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1284a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1286a30f8f8cSSatish Balay } 1287a30f8f8cSSatish Balay 128866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1289d71ae5a4SJacob Faibussowitsch { 1290d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1291d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1292d0d4cfc2SHong Zhang 1293d0d4cfc2SHong Zhang PetscFunctionBegin; 1294d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296d0d4cfc2SHong Zhang } 129766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1298d71ae5a4SJacob Faibussowitsch { 1299d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1300d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1301d0d4cfc2SHong Zhang 1302d0d4cfc2SHong Zhang PetscFunctionBegin; 1303d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1305d0d4cfc2SHong Zhang } 1306d0d4cfc2SHong Zhang 130766976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1308d71ae5a4SJacob Faibussowitsch { 13095f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 13105f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13112726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 13122726fb6dSPierre Jolivet 13139566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13149566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13155f80ce2aSJacob Faibussowitsch } 13163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13172726fb6dSPierre Jolivet } 13182726fb6dSPierre Jolivet 131966976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1320d71ae5a4SJacob Faibussowitsch { 132199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 132299cafbc1SBarry Smith 132399cafbc1SBarry Smith PetscFunctionBegin; 13249566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13259566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132799cafbc1SBarry Smith } 132899cafbc1SBarry Smith 132966976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1330d71ae5a4SJacob Faibussowitsch { 133199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 133299cafbc1SBarry Smith 133399cafbc1SBarry Smith PetscFunctionBegin; 13349566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13359566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133799cafbc1SBarry Smith } 133899cafbc1SBarry Smith 13397dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 134036032a97SHong Zhang Input: isrow - distributed(parallel), 134136032a97SHong Zhang iscol_local - locally owned (seq) 134236032a97SHong Zhang */ 134366976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1344d71ae5a4SJacob Faibussowitsch { 13458f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13468f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 134736032a97SHong Zhang 134836032a97SHong Zhang PetscFunctionBegin; 134966976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13509566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13519566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 135266976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13538f46ffcaSHong Zhang 13549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13559566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13568f46ffcaSHong Zhang 13579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13619566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13629566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13638f46ffcaSHong Zhang 13648f46ffcaSHong Zhang nmatch = 0; 13658f46ffcaSHong Zhang k = 0; 13668f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13678f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13688f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13699371c9d4SSatish Balay k = j; 13709371c9d4SSatish Balay nmatch++; 13718f46ffcaSHong Zhang break; 13728f46ffcaSHong Zhang } 13738f46ffcaSHong Zhang } 13748f46ffcaSHong Zhang } 13759566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13779566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13789566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13791098a8e8SHong Zhang if (nmatch < sz1) { 13801098a8e8SHong Zhang *flg = PETSC_FALSE; 13811098a8e8SHong Zhang } else { 13821098a8e8SHong Zhang *flg = PETSC_TRUE; 13831098a8e8SHong Zhang } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13858f46ffcaSHong Zhang } 138636032a97SHong Zhang 138766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1388d71ae5a4SJacob Faibussowitsch { 1389fdfbdca6SPierre Jolivet Mat C[2]; 1390fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1391fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1392fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 139336032a97SHong Zhang 139436032a97SHong Zhang PetscFunctionBegin; 13959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1396fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 139736032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13989566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13995f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 140036032a97SHong Zhang } else { 14019566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 14029566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1403fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 14048f46ffcaSHong Zhang } 1405fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1406fdfbdca6SPierre Jolivet if (!isequal) { 1407fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1408fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1409fdfbdca6SPierre Jolivet if (!isidentity) { 1410fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1411fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1412fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1413fdfbdca6SPierre Jolivet } else { 1414fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1415fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1416fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1417fdfbdca6SPierre Jolivet } 1418fdfbdca6SPierre Jolivet } 1419fdfbdca6SPierre Jolivet } 14207dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1421fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1422fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14238f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1424fdfbdca6SPierre Jolivet IS intersect; 1425fdfbdca6SPierre Jolivet PetscInt ni; 1426fdfbdca6SPierre Jolivet 1427fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1428fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1429fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1430fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1431fdfbdca6SPierre Jolivet } 1432fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1433fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1434fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1435fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1436fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1437fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1438fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1439fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1440fdfbdca6SPierre Jolivet } 1441fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1442fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1443fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1444fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1445fdfbdca6SPierre Jolivet } 14469566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14488f46ffcaSHong Zhang } 14493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14508f46ffcaSHong Zhang } 14518f46ffcaSHong Zhang 145266976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1453d71ae5a4SJacob Faibussowitsch { 1454a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1455a30f8f8cSSatish Balay 1456a30f8f8cSSatish Balay PetscFunctionBegin; 14579566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1460a30f8f8cSSatish Balay } 1461a30f8f8cSSatish Balay 146266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1463d71ae5a4SJacob Faibussowitsch { 1464a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1465a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14663966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1467a30f8f8cSSatish Balay 1468a30f8f8cSSatish Balay PetscFunctionBegin; 1469d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 147026fbe8dcSKarl Rupp 14719566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 147226fbe8dcSKarl Rupp 14739371c9d4SSatish Balay isend[0] = info->nz_used; 14749371c9d4SSatish Balay isend[1] = info->nz_allocated; 14759371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14769371c9d4SSatish Balay isend[3] = info->memory; 14779371c9d4SSatish Balay isend[4] = info->mallocs; 147826fbe8dcSKarl Rupp 14799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 148026fbe8dcSKarl Rupp 14819371c9d4SSatish Balay isend[0] += info->nz_used; 14829371c9d4SSatish Balay isend[1] += info->nz_allocated; 14839371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14849371c9d4SSatish Balay isend[3] += info->memory; 14859371c9d4SSatish Balay isend[4] += info->mallocs; 1486a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1487a30f8f8cSSatish Balay info->nz_used = isend[0]; 1488a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1489a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1490a30f8f8cSSatish Balay info->memory = isend[3]; 1491a30f8f8cSSatish Balay info->mallocs = isend[4]; 1492a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14931c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 149426fbe8dcSKarl Rupp 1495a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1496a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1497a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1498a30f8f8cSSatish Balay info->memory = irecv[3]; 1499a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1500a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 15011c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 150226fbe8dcSKarl Rupp 1503a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1504a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1505a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1506a30f8f8cSSatish Balay info->memory = irecv[3]; 1507a30f8f8cSSatish Balay info->mallocs = irecv[4]; 150898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1509a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1510a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1511a30f8f8cSSatish Balay info->factor_mallocs = 0; 15123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1513a30f8f8cSSatish Balay } 1514a30f8f8cSSatish Balay 151566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1516d71ae5a4SJacob Faibussowitsch { 1517a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1518d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1519a30f8f8cSSatish Balay 1520a30f8f8cSSatish Balay PetscFunctionBegin; 1521e98b92d7SKris Buschelman switch (op) { 1522512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1523e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 152428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1525a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1526c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1527e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 152843674050SBarry Smith MatCheckPreallocated(A, 1); 15299566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15309566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1531e98b92d7SKris Buschelman break; 1532e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 153343674050SBarry Smith MatCheckPreallocated(A, 1); 15344e0d8c25SBarry Smith a->roworiented = flg; 153526fbe8dcSKarl Rupp 15369566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15379566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1538e98b92d7SKris Buschelman break; 15398c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1540d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1541d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1542d71ae5a4SJacob Faibussowitsch break; 1543d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1544d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1545d71ae5a4SJacob Faibussowitsch break; 1546d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1547d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1548d71ae5a4SJacob Faibussowitsch break; 1549d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1550d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1551d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15520f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1553eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1554547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1555eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1556eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1557eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1558b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1559eb1ec7c1SStefano Zampini } 15600f2140c7SStefano Zampini #endif 1561eeffb40dSHong Zhang break; 1562ffa07934SHong Zhang case MAT_SPD: 1563d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1564d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1565d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1566eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1567eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1568eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1569eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1570eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1571eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1572eb1ec7c1SStefano Zampini } 1573eb1ec7c1SStefano Zampini #endif 1574eeffb40dSHong Zhang break; 157577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 157643674050SBarry Smith MatCheckPreallocated(A, 1); 15779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1578eeffb40dSHong Zhang break; 15799a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1580b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15815f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15829566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 158377e54ba9SKris Buschelman break; 1584d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1585d71ae5a4SJacob Faibussowitsch break; 1586d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1587d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1588d71ae5a4SJacob Faibussowitsch break; 1589d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1590d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1591d71ae5a4SJacob Faibussowitsch break; 1592d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1593d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1594d71ae5a4SJacob Faibussowitsch break; 1595d71ae5a4SJacob Faibussowitsch default: 1596d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1597a30f8f8cSSatish Balay } 15983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1599a30f8f8cSSatish Balay } 1600a30f8f8cSSatish Balay 160166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1602d71ae5a4SJacob Faibussowitsch { 1603a30f8f8cSSatish Balay PetscFunctionBegin; 16047fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1605cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 16069566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1607cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 16089566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1609fc4dec0aSBarry Smith } 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611a30f8f8cSSatish Balay } 1612a30f8f8cSSatish Balay 161366976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1614d71ae5a4SJacob Faibussowitsch { 1615a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1616a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 16175e90f9d9SHong Zhang PetscInt nv, m, n; 1618ace3abfcSBarry Smith PetscBool flg; 1619a30f8f8cSSatish Balay 1620a30f8f8cSSatish Balay PetscFunctionBegin; 1621a30f8f8cSSatish Balay if (ll != rr) { 16229566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 16235f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1624a30f8f8cSSatish Balay } 16253ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1626b3bf805bSHong Zhang 16279566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 16285f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1629b3bf805bSHong Zhang 16309566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 16315f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 16325e90f9d9SHong Zhang 16339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16345e90f9d9SHong Zhang 16355e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1636dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16375e90f9d9SHong Zhang 16385e90f9d9SHong Zhang /* scale the diagonal part */ 1639dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1640a30f8f8cSSatish Balay 16415e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16429566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1643dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1645a30f8f8cSSatish Balay } 1646a30f8f8cSSatish Balay 164766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1648d71ae5a4SJacob Faibussowitsch { 1649f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1650a30f8f8cSSatish Balay 1651a30f8f8cSSatish Balay PetscFunctionBegin; 16529566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1654a30f8f8cSSatish Balay } 1655a30f8f8cSSatish Balay 16566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1657a30f8f8cSSatish Balay 165866976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1659d71ae5a4SJacob Faibussowitsch { 1660a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1661a30f8f8cSSatish Balay Mat a, b, c, d; 1662ace3abfcSBarry Smith PetscBool flg; 1663a30f8f8cSSatish Balay 1664a30f8f8cSSatish Balay PetscFunctionBegin; 16659371c9d4SSatish Balay a = matA->A; 16669371c9d4SSatish Balay b = matA->B; 16679371c9d4SSatish Balay c = matB->A; 16689371c9d4SSatish Balay d = matB->B; 1669a30f8f8cSSatish Balay 16709566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 167148a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16721c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1674a30f8f8cSSatish Balay } 1675a30f8f8cSSatish Balay 167666976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1677d71ae5a4SJacob Faibussowitsch { 16784c7a3774SStefano Zampini PetscBool isbaij; 16793c896bc6SHong Zhang 16803c896bc6SHong Zhang PetscFunctionBegin; 16819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16825f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16833c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16843c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16859566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16869566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16879566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16883c896bc6SHong Zhang } else { 16894c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16904c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16914c7a3774SStefano Zampini 16929566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16939566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16943c896bc6SHong Zhang } 16959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16973c896bc6SHong Zhang } 16983c896bc6SHong Zhang 169966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1700d71ae5a4SJacob Faibussowitsch { 17014fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 17024fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 17034fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 17044fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 17054fe895cdSHong Zhang 17064fe895cdSHong Zhang PetscFunctionBegin; 17074fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17084fe895cdSHong Zhang PetscScalar alpha = a; 17094fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 17104fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 17119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1712792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 17134fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 17144fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 17159566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1716792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 17179566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1718ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 17199566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 17209566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 17219566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 17224fe895cdSHong Zhang } else { 17234de5dceeSHong Zhang Mat B; 17244de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 17255f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 17269566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 17279566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 17289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 17299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 17309566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 17319566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 17329566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17349566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17359566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17369566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17379566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17389566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17399566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17409566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17419566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17429566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17439566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17444fe895cdSHong Zhang } 17453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17464fe895cdSHong Zhang } 17474fe895cdSHong Zhang 174866976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1749d71ae5a4SJacob Faibussowitsch { 17501302d50aSBarry Smith PetscInt i; 1751afebec48SHong Zhang PetscBool flg; 1752a5e6ed63SBarry Smith 17536849ba73SBarry Smith PetscFunctionBegin; 17549566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1755a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17569566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 175748a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17584dcd73b1SHong Zhang } 17593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1760a5e6ed63SBarry Smith } 1761a5e6ed63SBarry Smith 176266976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1763d71ae5a4SJacob Faibussowitsch { 17647d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17656f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17667d68702bSBarry Smith 17677d68702bSBarry Smith PetscFunctionBegin; 17686f33a894SBarry Smith if (!Y->preallocated) { 17699566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17706f33a894SBarry Smith } else if (!aij->nz) { 1771b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17729566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1773b83222d8SBarry Smith aij->nonew = nonew; 17747d68702bSBarry Smith } 17759566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17777d68702bSBarry Smith } 17787d68702bSBarry Smith 177966976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1780d71ae5a4SJacob Faibussowitsch { 17813b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17823b49f96aSBarry Smith 17833b49f96aSBarry Smith PetscFunctionBegin; 17845f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17859566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17863b49f96aSBarry Smith if (d) { 17873b49f96aSBarry Smith PetscInt rstart; 17889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17893b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17903b49f96aSBarry Smith } 17913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17923b49f96aSBarry Smith } 17933b49f96aSBarry Smith 179466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1795d71ae5a4SJacob Faibussowitsch { 1796a5b7ff6bSBarry Smith PetscFunctionBegin; 1797a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1799a5b7ff6bSBarry Smith } 18003b49f96aSBarry Smith 180117ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 180217ea310bSPierre Jolivet { 180317ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 180417ea310bSPierre Jolivet 180517ea310bSPierre Jolivet PetscFunctionBegin; 180617ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 180717ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 180817ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 180917ea310bSPierre Jolivet } 181017ea310bSPierre Jolivet 18116cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1812*789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1813*789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 18146cff0a6bSPierre Jolivet 18153964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1816a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1817a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1818a9d4b620SHong Zhang MatMult_MPISBAIJ, 181997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1820431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1821431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin /* 10*/ NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 182841f059aeSBarry Smith MatSOR_MPISBAIJ, 1829a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 183097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1831a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1832a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1833a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1834a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 183597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1836a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1837a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1838a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1839f4259b30SLisandro Dalcin /* 24*/ NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 184426cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1848f4259b30SLisandro Dalcin NULL, 1849d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18557dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1856d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1857a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18583c896bc6SHong Zhang MatCopy_MPISBAIJ, 1859f4259b30SLisandro Dalcin /* 44*/ NULL, 1860a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18617d68702bSBarry Smith MatShift_MPISBAIJ, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin /* 49*/ NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin /* 54*/ NULL, 1870f4259b30SLisandro Dalcin NULL, 1871a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1872f4259b30SLisandro Dalcin NULL, 1873a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18747dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin /* 64*/ NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1885f4259b30SLisandro Dalcin NULL, 188628d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin /* 74*/ NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin /* 79*/ NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 18985bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1899f4259b30SLisandro Dalcin /* 84*/ NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin NULL, 1904f4259b30SLisandro Dalcin /* 89*/ NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin NULL, 1909f4259b30SLisandro Dalcin /* 94*/ NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 1912f4259b30SLisandro Dalcin NULL, 1913f4259b30SLisandro Dalcin NULL, 1914f4259b30SLisandro Dalcin /* 99*/ NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 19172726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1918f4259b30SLisandro Dalcin NULL, 1919f4259b30SLisandro Dalcin /*104*/ NULL, 192099cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1921d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1922d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 192395936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1924f4259b30SLisandro Dalcin /*109*/ NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 19283b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1929f4259b30SLisandro Dalcin /*114*/ NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin NULL, 1934f4259b30SLisandro Dalcin /*119*/ NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin NULL, 1937f4259b30SLisandro Dalcin NULL, 1938f4259b30SLisandro Dalcin NULL, 1939f4259b30SLisandro Dalcin /*124*/ NULL, 1940f4259b30SLisandro Dalcin NULL, 1941f4259b30SLisandro Dalcin NULL, 1942f4259b30SLisandro Dalcin NULL, 1943f4259b30SLisandro Dalcin NULL, 1944f4259b30SLisandro Dalcin /*129*/ NULL, 1945f4259b30SLisandro Dalcin NULL, 1946f4259b30SLisandro Dalcin NULL, 1947f4259b30SLisandro Dalcin NULL, 1948f4259b30SLisandro Dalcin NULL, 1949f4259b30SLisandro Dalcin /*134*/ NULL, 1950f4259b30SLisandro Dalcin NULL, 1951f4259b30SLisandro Dalcin NULL, 1952f4259b30SLisandro Dalcin NULL, 1953f4259b30SLisandro Dalcin NULL, 195446533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1955f4259b30SLisandro Dalcin NULL, 1956f4259b30SLisandro Dalcin NULL, 1957f4259b30SLisandro Dalcin NULL, 1958f4259b30SLisandro Dalcin NULL, 1959d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1960d70f29a3SPierre Jolivet NULL, 1961d70f29a3SPierre Jolivet NULL, 196299a7f59eSMark Adams NULL, 196399a7f59eSMark Adams NULL, 19647fb60732SBarry Smith NULL, 1965dec0b466SHong Zhang /*150*/ NULL, 1966eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 1967eede4a3fSMark Adams NULL}; 1968a30f8f8cSSatish Balay 196966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1970d71ae5a4SJacob Faibussowitsch { 1971476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1972535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19735d2a9ed1SStefano Zampini PetscMPIInt size; 1974a23d5eceSKris Buschelman 1975a23d5eceSKris Buschelman PetscFunctionBegin; 1976ad79cf63SBarry Smith if (B->hash_active) { 1977aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1978ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1979ad79cf63SBarry Smith } 1980ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19819566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19849566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19855f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19865f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1987899cda47SBarry Smith 1988d0f46423SBarry Smith mbs = B->rmap->n / bs; 1989d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19905f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1991a23d5eceSKris Buschelman 1992d0f46423SBarry Smith B->rmap->bs = bs; 1993a23d5eceSKris Buschelman b->bs2 = bs * bs; 1994a23d5eceSKris Buschelman b->mbs = mbs; 1995a23d5eceSKris Buschelman b->Mbs = Mbs; 1996de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1997de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1998a23d5eceSKris Buschelman 1999ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2000d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2001d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2002a23d5eceSKris Buschelman 2003d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2004d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2005a23d5eceSKris Buschelman 2006cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2007eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2008cb7b82ddSBarry Smith #else 20099566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2010cb7b82ddSBarry Smith #endif 20119566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 20129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 20139566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 20149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 20159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 20169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 20179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 20189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 20199566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 2020cb7b82ddSBarry Smith 20219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2022c508b908SBarry Smith 2023c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 20249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 20259566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 20269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 20279566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2028c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2029cb7b82ddSBarry Smith 2030c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2031ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 20329566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 20339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 20349566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 2035c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2036a23d5eceSKris Buschelman 20379566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 20389566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 203926fbe8dcSKarl Rupp 2040526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2041cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2042cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2044a23d5eceSKris Buschelman } 2045a23d5eceSKris Buschelman 204666976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2047d71ae5a4SJacob Faibussowitsch { 204802106b30SBarry Smith PetscInt m, rstart, cend; 2049f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2050f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2051f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2052bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20533bd0feecSPierre Jolivet PetscBool nooffprocentries; 2054dfb205c3SBarry Smith 2055dfb205c3SBarry Smith PetscFunctionBegin; 20565f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20619566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2062dfb205c3SBarry Smith m = B->rmap->n / bs; 2063dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2064dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2065dfb205c3SBarry Smith 20665f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2068dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2069dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20705f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20714cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2072dfb205c3SBarry Smith JJ = jj + ii[i]; 20730cd7f59aSBarry Smith bd = 0; 2074dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20750cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2076dfb205c3SBarry Smith JJ++; 20770cd7f59aSBarry Smith bd++; 2078dfb205c3SBarry Smith } 2079dfb205c3SBarry Smith d = 0; 2080dfb205c3SBarry Smith for (; j < nz; j++) { 2081dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2082dfb205c3SBarry Smith d++; 2083dfb205c3SBarry Smith } 2084dfb205c3SBarry Smith d_nnz[i] = d; 20850cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20860cd7f59aSBarry Smith nz = nz - bd; 20870cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2088dfb205c3SBarry Smith } 20899566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20909566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20919566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2092dfb205c3SBarry Smith 2093dfb205c3SBarry Smith values = (PetscScalar *)V; 209448a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2095dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2096dfb205c3SBarry Smith PetscInt row = i + rstart; 2097dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2098dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2099bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2100dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 21019566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2102bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2103bb80cfbbSStefano Zampini PetscInt j; 21040cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 21050cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 21069566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 21070cd7f59aSBarry Smith } 21080cd7f59aSBarry Smith } 2109dfb205c3SBarry Smith } 2110dfb205c3SBarry Smith 21119566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 21123bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 21133bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 21149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21163bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21173bd0feecSPierre Jolivet 21189566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 21193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2120dfb205c3SBarry Smith } 2121dfb205c3SBarry Smith 21220bad9183SKris Buschelman /*MC 2123fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2124828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2125828413b8SBarry Smith the matrix is stored. 2126828413b8SBarry Smith 2127828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 212811a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 21290bad9183SKris Buschelman 21302ef1f0ffSBarry Smith Options Database Key: 213111a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 21320bad9183SKris Buschelman 21332ef1f0ffSBarry Smith Level: beginner 21342ef1f0ffSBarry Smith 213511a5261eSBarry Smith Note: 2136476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2137476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2138476417e5SBarry Smith 21391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 21400bad9183SKris Buschelman M*/ 21410bad9183SKris Buschelman 2142d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2143d71ae5a4SJacob Faibussowitsch { 2144b5df2d14SHong Zhang Mat_MPISBAIJ *b; 214594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2146b5df2d14SHong Zhang 2147b5df2d14SHong Zhang PetscFunctionBegin; 21484dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2149b0a32e0cSBarry Smith B->data = (void *)b; 2150aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2151b5df2d14SHong Zhang 2152b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2153b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2154b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2155b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 215626fbe8dcSKarl Rupp 21579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2159b5df2d14SHong Zhang 2160b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2162b5df2d14SHong Zhang 2163b5df2d14SHong Zhang /* build cache for off array entries formed */ 21649566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 216526fbe8dcSKarl Rupp 2166b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21670298fd71SBarry Smith b->colmap = NULL; 21680298fd71SBarry Smith b->garray = NULL; 2169b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2170b5df2d14SHong Zhang 2171b5df2d14SHong Zhang /* stuff used in block assembly */ 2172f4259b30SLisandro Dalcin b->barray = NULL; 2173b5df2d14SHong Zhang 2174b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2175f4259b30SLisandro Dalcin b->lvec = NULL; 2176f4259b30SLisandro Dalcin b->Mvctx = NULL; 2177f4259b30SLisandro Dalcin b->slvec0 = NULL; 2178f4259b30SLisandro Dalcin b->slvec0b = NULL; 2179f4259b30SLisandro Dalcin b->slvec1 = NULL; 2180f4259b30SLisandro Dalcin b->slvec1a = NULL; 2181f4259b30SLisandro Dalcin b->slvec1b = NULL; 2182f4259b30SLisandro Dalcin b->sMvctx = NULL; 2183b5df2d14SHong Zhang 2184b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2185f4259b30SLisandro Dalcin b->rowindices = NULL; 2186f4259b30SLisandro Dalcin b->rowvalues = NULL; 2187b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2188b5df2d14SHong Zhang 2189b5df2d14SHong Zhang /* hash table stuff */ 2190f4259b30SLisandro Dalcin b->ht = NULL; 2191f4259b30SLisandro Dalcin b->hd = NULL; 2192b5df2d14SHong Zhang b->ht_size = 0; 2193b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2194b5df2d14SHong Zhang b->ht_fact = 0; 2195b5df2d14SHong Zhang b->ht_total_ct = 0; 2196b5df2d14SHong Zhang b->ht_insert_ct = 0; 2197b5df2d14SHong Zhang 21987dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21997a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 22007a868f3eSHong Zhang 2201f4259b30SLisandro Dalcin b->in_loc = NULL; 2202f4259b30SLisandro Dalcin b->v_loc = NULL; 220359ffdab8SBarry Smith b->n_loc = 0; 220494ae4db5SBarry Smith 22059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 22069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 22079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 22089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 22096214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 22109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 22116214f412SHong Zhang #endif 2212d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 22139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2214d24d4204SJose E. Roman #endif 22159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 22169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2217aa5a9175SDahai Guo 2218b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2219b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2220b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2221b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2222eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2223b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2224eb1ec7c1SStefano Zampini #else 2225b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2226eb1ec7c1SStefano Zampini #endif 222713647f61SHong Zhang 22289566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2229d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 22309566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 223194ae4db5SBarry Smith if (flg) { 223294ae4db5SBarry Smith PetscReal fact = 1.39; 22339566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 22349566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 223594ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 22369566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 22379566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 223894ae4db5SBarry Smith } 2239d0609cedSBarry Smith PetscOptionsEnd(); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241b5df2d14SHong Zhang } 2242b5df2d14SHong Zhang 22432920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2244209238afSKris Buschelman /*MC 2245002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2246209238afSKris Buschelman 224711a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 224811a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2249209238afSKris Buschelman 225011a5261eSBarry Smith Options Database Key: 2251c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2252209238afSKris Buschelman 2253209238afSKris Buschelman Level: beginner 2254209238afSKris Buschelman 22551cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2256209238afSKris Buschelman M*/ 2257209238afSKris Buschelman 2258b5df2d14SHong Zhang /*@C 2259b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2260b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2261b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2262b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2263b5df2d14SHong Zhang 2264c3339decSBarry Smith Collective 2265b5df2d14SHong Zhang 2266b5df2d14SHong Zhang Input Parameters: 22671c4f3114SJed Brown + B - the matrix 2268bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2269bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2270b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2271b5df2d14SHong Zhang submatrix (same for all local rows) 2272b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22736d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22742ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 227595742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2276b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2277b5df2d14SHong Zhang submatrix (same for all local rows). 2278b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2279c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22802ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2281b5df2d14SHong Zhang 2282b5df2d14SHong Zhang Options Database Keys: 2283a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2284b5df2d14SHong Zhang block calculations (much slower) 2285a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2286b5df2d14SHong Zhang 22872ef1f0ffSBarry Smith Level: intermediate 22882ef1f0ffSBarry Smith 2289b5df2d14SHong Zhang Notes: 2290b5df2d14SHong Zhang 229111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2292b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2293b5df2d14SHong Zhang 229449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 229549a6f317SBarry Smith 2296b5df2d14SHong Zhang Storage Information: 2297b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2298b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2299b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2300b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2301b5df2d14SHong Zhang 2302b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 23032ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 23042ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2305b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 23062ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2307b5df2d14SHong Zhang 230811a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2309aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 23102ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2311aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2312aa95bbe8SBarry Smith 2313b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2314b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2315b5df2d14SHong Zhang 2316b5df2d14SHong Zhang .vb 2317b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2318a4b1a0f6SJed Brown -------------------------- 2319c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2320c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2321c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2322a4b1a0f6SJed Brown -------------------------- 2323b5df2d14SHong Zhang .ve 2324b5df2d14SHong Zhang 2325b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2326b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23276d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 232811a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2329b5df2d14SHong Zhang 23302ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23316d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23322ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2333c2fc9fa9SBarry Smith 2334b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 23352ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2336b5df2d14SHong Zhang 23371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2338b5df2d14SHong Zhang @*/ 2339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2340d71ae5a4SJacob Faibussowitsch { 2341b5df2d14SHong Zhang PetscFunctionBegin; 23426ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23436ba663aaSJed Brown PetscValidType(B, 1); 23446ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2345cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2347b5df2d14SHong Zhang } 2348b5df2d14SHong Zhang 23492920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2350a30f8f8cSSatish Balay /*@C 235111a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2352a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2353a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 235420f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2355a30f8f8cSSatish Balay 2356d083f849SBarry Smith Collective 2357a30f8f8cSSatish Balay 2358a30f8f8cSSatish Balay Input Parameters: 2359a30f8f8cSSatish Balay + comm - MPI communicator 236011a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 236120f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 236220f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2363a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2364a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 236520f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2366a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2367a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 236820f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 236920f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2370a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2371a30f8f8cSSatish Balay submatrix (same for all local rows) 2372a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23736d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23742ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 237595742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 237695742e49SBarry Smith set its value even if it is zero. 2377a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2378a30f8f8cSSatish Balay submatrix (same for all local rows). 2379a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2380a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23812ef1f0ffSBarry Smith each block row) or `NULL`. 2382a30f8f8cSSatish Balay 2383a30f8f8cSSatish Balay Output Parameter: 2384a30f8f8cSSatish Balay . A - the matrix 2385a30f8f8cSSatish Balay 2386a30f8f8cSSatish Balay Options Database Keys: 2387a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2388a30f8f8cSSatish Balay block calculations (much slower) 2389a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2390a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2391a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2392a30f8f8cSSatish Balay 23932ef1f0ffSBarry Smith Level: intermediate 23942ef1f0ffSBarry Smith 23952ef1f0ffSBarry Smith Notes: 239677433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2397f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 239811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2399175b88e8SBarry Smith 2400d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 24016d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2402d1be2dadSMatthew Knepley 2403a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2404a30f8f8cSSatish Balay (possibly both). 2405a30f8f8cSSatish Balay 240611a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2407a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2408a30f8f8cSSatish Balay 240949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 241049a6f317SBarry Smith 2411a30f8f8cSSatish Balay Storage Information: 2412a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2413a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2414a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2415a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2416a30f8f8cSSatish Balay 2417a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 24182ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 24192ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2420a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 24212ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2422a30f8f8cSSatish Balay 2423a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2424a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2425a30f8f8cSSatish Balay 2426a30f8f8cSSatish Balay .vb 2427a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2428a4b1a0f6SJed Brown -------------------------- 2429c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2430c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2431c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2432a4b1a0f6SJed Brown -------------------------- 2433a30f8f8cSSatish Balay .ve 2434a30f8f8cSSatish Balay 2435a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2436a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24376d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24382ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2439a30f8f8cSSatish Balay 24402ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24416d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24422ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2443a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24442ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2445a30f8f8cSSatish Balay 24461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2447a30f8f8cSSatish Balay @*/ 2448d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2449d71ae5a4SJacob Faibussowitsch { 24501302d50aSBarry Smith PetscMPIInt size; 2451a30f8f8cSSatish Balay 2452a30f8f8cSSatish Balay PetscFunctionBegin; 24539566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2456273d9f13SBarry Smith if (size > 1) { 24579566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24589566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2459273d9f13SBarry Smith } else { 24609566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24619566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2462273d9f13SBarry Smith } 24633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2464a30f8f8cSSatish Balay } 2465a30f8f8cSSatish Balay 2466d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2467d71ae5a4SJacob Faibussowitsch { 2468a30f8f8cSSatish Balay Mat mat; 2469a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2470d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2471387bc808SHong Zhang PetscScalar *array; 2472a30f8f8cSSatish Balay 2473a30f8f8cSSatish Balay PetscFunctionBegin; 2474f4259b30SLisandro Dalcin *newmat = NULL; 247526fbe8dcSKarl Rupp 24769566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24789566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24799566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24809566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2481e1b6402fSHong Zhang 2482420957c1SBarry Smith if (matin->hash_active) { 2483420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2484420957c1SBarry Smith } else { 2485d5f3da31SBarry Smith mat->factortype = matin->factortype; 2486273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 248782327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24887fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24897fff6886SHong Zhang 2490b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2491a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2492a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2493a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2494a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2495a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2496a30f8f8cSSatish Balay 2497a30f8f8cSSatish Balay a->size = oldmat->size; 2498a30f8f8cSSatish Balay a->rank = oldmat->rank; 2499a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2500a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2501f4259b30SLisandro Dalcin a->rowindices = NULL; 2502f4259b30SLisandro Dalcin a->rowvalues = NULL; 2503a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2504f4259b30SLisandro Dalcin a->barray = NULL; 2505899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2506899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2507899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2508899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2509a30f8f8cSSatish Balay 2510a30f8f8cSSatish Balay /* hash table stuff */ 2511f4259b30SLisandro Dalcin a->ht = NULL; 2512f4259b30SLisandro Dalcin a->hd = NULL; 2513a30f8f8cSSatish Balay a->ht_size = 0; 2514a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2515a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2516a30f8f8cSSatish Balay a->ht_total_ct = 0; 2517a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2518a30f8f8cSSatish Balay 25199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2520a30f8f8cSSatish Balay if (oldmat->colmap) { 2521a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2522eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2523a30f8f8cSSatish Balay #else 25249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 25259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2526a30f8f8cSSatish Balay #endif 2527f4259b30SLisandro Dalcin } else a->colmap = NULL; 2528387bc808SHong Zhang 2529f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 25309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 25319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2532f4259b30SLisandro Dalcin } else a->garray = NULL; 2533a30f8f8cSSatish Balay 25349566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 25359566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 25369566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 253782327fa8SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25399566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2540387bc808SHong Zhang 25419566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25429566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25439566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25449566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25469566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25479566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2549387bc808SHong Zhang 2550387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25519566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2552387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 255382327fa8SHong Zhang 25549566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25559566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2556420957c1SBarry Smith } 25579566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2558a30f8f8cSSatish Balay *newmat = mat; 25593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2560a30f8f8cSSatish Balay } 2561a30f8f8cSSatish Balay 2562618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2563618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2564618cc2edSLisandro Dalcin 25656cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2566d71ae5a4SJacob Faibussowitsch { 25677f489da9SVaclav Hapla PetscBool isbinary; 256895936485SShri Abhyankar 256995936485SShri Abhyankar PetscFunctionBegin; 25709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25715f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25729566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 257495936485SShri Abhyankar } 257595936485SShri Abhyankar 2576*789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2577d71ae5a4SJacob Faibussowitsch { 257824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2579f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2580ca54ac64SHong Zhang PetscReal atmp; 258187828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25821302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25831302d50aSBarry Smith PetscMPIInt rank, size; 25841302d50aSBarry Smith PetscInt *rowners_bs, dest, count, source; 258587828ca2SBarry Smith PetscScalar *va; 25868a1c53f2SBarry Smith MatScalar *ba; 2587f4c0e9e4SHong Zhang MPI_Status stat; 258824d5174aSHong Zhang 258924d5174aSHong Zhang PetscFunctionBegin; 25905f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25919566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25929566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2593f4c0e9e4SHong Zhang 25949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2596f4c0e9e4SHong Zhang 2597d0f46423SBarry Smith bs = A->rmap->bs; 2598f4c0e9e4SHong Zhang mbs = a->mbs; 2599f4c0e9e4SHong Zhang Mbs = a->Mbs; 2600f4c0e9e4SHong Zhang ba = b->a; 2601f4c0e9e4SHong Zhang bi = b->i; 2602f4c0e9e4SHong Zhang bj = b->j; 2603f4c0e9e4SHong Zhang 2604f4c0e9e4SHong Zhang /* find ownerships */ 2605d0f46423SBarry Smith rowners_bs = A->rmap->range; 2606f4c0e9e4SHong Zhang 2607f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 26089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2609f4c0e9e4SHong Zhang 2610f4c0e9e4SHong Zhang /* row_max for B */ 2611b8475685SHong Zhang if (rank != size - 1) { 2612f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 26139371c9d4SSatish Balay ncols = bi[1] - bi[0]; 26149371c9d4SSatish Balay bi++; 2615f4c0e9e4SHong Zhang brow = bs * i; 2616f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2617f4c0e9e4SHong Zhang bcol = bs * (*bj); 2618f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2619ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 262004d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2621f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 26229371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 26239371c9d4SSatish Balay ba++; 2624ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2625ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2626f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2627f4c0e9e4SHong Zhang } 2628f4c0e9e4SHong Zhang } 2629f4c0e9e4SHong Zhang bj++; 2630f4c0e9e4SHong Zhang } 2631f4c0e9e4SHong Zhang } 2632f4c0e9e4SHong Zhang 2633f4c0e9e4SHong Zhang /* send values to its owners */ 2634f4c0e9e4SHong Zhang for (dest = rank + 1; dest < size; dest++) { 2635f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2636ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2638ca54ac64SHong Zhang } 2639f4c0e9e4SHong Zhang } 2640f4c0e9e4SHong Zhang 2641f4c0e9e4SHong Zhang /* receive values */ 2642ca54ac64SHong Zhang if (rank) { 2643f4c0e9e4SHong Zhang rvalues = work; 2644ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2645f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2647f4c0e9e4SHong Zhang /* process values */ 2648f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2649ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2650f4c0e9e4SHong Zhang } 2651f4c0e9e4SHong Zhang } 2652ca54ac64SHong Zhang } 2653f4c0e9e4SHong Zhang 26549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26559566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 265724d5174aSHong Zhang } 26582798e883SHong Zhang 2659*789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2660d71ae5a4SJacob Faibussowitsch { 26612798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2662d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26633649974fSBarry Smith PetscScalar *x, *ptr, *from; 2664ffe4fb16SHong Zhang Vec bb1; 26653649974fSBarry Smith const PetscScalar *b; 2666ffe4fb16SHong Zhang 2667ffe4fb16SHong Zhang PetscFunctionBegin; 26685f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26695f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2670ffe4fb16SHong Zhang 2671a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26729566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2674a2b30743SBarry Smith } 2675a2b30743SBarry Smith 2676ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2677ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26789566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2679ffe4fb16SHong Zhang its--; 2680ffe4fb16SHong Zhang } 2681ffe4fb16SHong Zhang 26829566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2683ffe4fb16SHong Zhang while (its--) { 2684ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26859566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2686ffe4fb16SHong Zhang 2687ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26889566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26899566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2692ffe4fb16SHong Zhang 26939566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2694ffe4fb16SHong Zhang 2695ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26969566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26979566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2700ffe4fb16SHong Zhang 2701ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2702629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2703629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2704ffe4fb16SHong Zhang 27059566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27069566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27089566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2709ffe4fb16SHong Zhang 2710ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 27119566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2712ffe4fb16SHong Zhang 2713ffe4fb16SHong Zhang /* local diagonal sweep */ 27149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2715ffe4fb16SHong Zhang } 27169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2717fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27189566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2719fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2721fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2722fa22f6d0SBarry Smith Vec xx1; 2723ace3abfcSBarry Smith PetscBool hasop; 272420f1ed55SBarry Smith const PetscScalar *diag; 2725887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 272620f1ed55SBarry Smith PetscInt i, n; 2727fa22f6d0SBarry Smith 2728fa22f6d0SBarry Smith if (!mat->xx1) { 27299566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 27309566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2731fa22f6d0SBarry Smith } 2732fa22f6d0SBarry Smith xx1 = mat->xx1; 2733fa22f6d0SBarry Smith bb1 = mat->bb1; 2734fa22f6d0SBarry Smith 27359566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2736fa22f6d0SBarry Smith 2737fa22f6d0SBarry Smith if (!mat->diag) { 2738effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27399566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27409566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2741fa22f6d0SBarry Smith } 27429566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2743fa22f6d0SBarry Smith 2744fa22f6d0SBarry Smith if (hasop) { 27459566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27469566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 274720f1ed55SBarry Smith } else { 274820f1ed55SBarry Smith /* 274920f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27509566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27519566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 275220f1ed55SBarry Smith */ 27539566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27569566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27579566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2758887ee2caSBarry Smith if (omega == 1.0) { 275926fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27609566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2761887ee2caSBarry Smith } else { 276226fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27639566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2764887ee2caSBarry Smith } 27659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27679566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 276920f1ed55SBarry Smith } 2770fa22f6d0SBarry Smith 2771fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2772629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2773629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27749566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27759566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27769566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27829566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2783fa22f6d0SBarry Smith 2784fa22f6d0SBarry Smith /* local sweep */ 27859566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27869566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2787f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2789ffe4fb16SHong Zhang } 2790ffe4fb16SHong Zhang 2791dfb205c3SBarry Smith /*@ 2792d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2793dfb205c3SBarry Smith 2794d083f849SBarry Smith Collective 2795dfb205c3SBarry Smith 2796dfb205c3SBarry Smith Input Parameters: 2797dfb205c3SBarry Smith + comm - MPI communicator 2798dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 279911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2800dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2801d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 28022ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 28032ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 28042ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2805483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2806dfb205c3SBarry Smith . j - column indices 2807dfb205c3SBarry Smith - a - matrix values 2808dfb205c3SBarry Smith 2809dfb205c3SBarry Smith Output Parameter: 2810dfb205c3SBarry Smith . mat - the matrix 2811dfb205c3SBarry Smith 2812dfb205c3SBarry Smith Level: intermediate 2813dfb205c3SBarry Smith 2814dfb205c3SBarry Smith Notes: 28152ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 28162ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 28172ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2818dfb205c3SBarry Smith 28192ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2820dfb205c3SBarry Smith 28211cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2822d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2823dfb205c3SBarry Smith @*/ 2824d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2825d71ae5a4SJacob Faibussowitsch { 2826dfb205c3SBarry Smith PetscFunctionBegin; 28275f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 28285f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 28299566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 28309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 28319566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 28329566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 28333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2834dfb205c3SBarry Smith } 2835dfb205c3SBarry Smith 2836dfb205c3SBarry Smith /*@C 283711a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2838dfb205c3SBarry Smith 2839d083f849SBarry Smith Collective 2840dfb205c3SBarry Smith 2841dfb205c3SBarry Smith Input Parameters: 28421c4f3114SJed Brown + B - the matrix 2843dfb205c3SBarry Smith . bs - the block size 2844d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2845d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2846d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2847dfb205c3SBarry Smith 2848664954b6SBarry Smith Level: advanced 2849664954b6SBarry Smith 2850664954b6SBarry Smith Notes: 2851d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2852d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2853d8a51d2aSBarry Smith called this routine. 2854d8a51d2aSBarry Smith 28550cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28560cd7f59aSBarry Smith and usually the numerical values as well 28570cd7f59aSBarry Smith 2858d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2859dfb205c3SBarry Smith 2860d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2861d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2862dfb205c3SBarry Smith @*/ 2863d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2864d71ae5a4SJacob Faibussowitsch { 2865dfb205c3SBarry Smith PetscFunctionBegin; 2866cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2868dfb205c3SBarry Smith } 2869dfb205c3SBarry Smith 2870d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2871d71ae5a4SJacob Faibussowitsch { 287210c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 287310c56fdeSHong Zhang PetscInt *indx; 287410c56fdeSHong Zhang PetscScalar *values; 2875dfb205c3SBarry Smith 28764dcd73b1SHong Zhang PetscFunctionBegin; 28779566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 287810c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 287910c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2880de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 288110c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2882de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28834dcd73b1SHong Zhang 28849566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28859371c9d4SSatish Balay mbs = m / bs; 28869371c9d4SSatish Balay Nbs = N / cbs; 288748a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2888da91a574SPierre Jolivet nbs = n / cbs; 28894dcd73b1SHong Zhang 28909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2891d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2892de25e9cbSPierre Jolivet 28939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2895de25e9cbSPierre Jolivet if (rank == size - 1) { 2896de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28975f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2898de25e9cbSPierre Jolivet } 2899de25e9cbSPierre Jolivet 2900d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 29019566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 290210c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 29039566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 29044dcd73b1SHong Zhang nnz = nnz / bs; 29054dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 29069566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 29079566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 29084dcd73b1SHong Zhang } 29099566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29109566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 29114dcd73b1SHong Zhang 29129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 29139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 29149566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 29169566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 29179566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2918d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 29194dcd73b1SHong Zhang } 29204dcd73b1SHong Zhang 292110c56fdeSHong Zhang /* numeric phase */ 29229566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 29239566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 29244dcd73b1SHong Zhang 29259566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 29264dcd73b1SHong Zhang for (i = 0; i < m; i++) { 29279566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29284dcd73b1SHong Zhang Ii = i + rstart; 29299566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 29309566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29314dcd73b1SHong Zhang } 29329566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 29349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 29353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29364dcd73b1SHong Zhang } 2937