xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 789afff49e22c0b31a41d280c30e86915c8d497b)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237e56f5c9eSBarry Smith     A->nonzerostate++; \
238a30f8f8cSSatish Balay   a_noinsert:; \
239a30f8f8cSSatish Balay     ailen[brow] = nrow; \
240a8f51744SPierre Jolivet   } while (0)
241e5e170daSBarry Smith 
242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
243a8f51744SPierre Jolivet   do { \
244a30f8f8cSSatish Balay     brow = row / bs; \
2459371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2469371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2479371c9d4SSatish Balay     rmax = bimax[brow]; \
2489371c9d4SSatish Balay     nrow = bilen[brow]; \
249a30f8f8cSSatish Balay     bcol = col / bs; \
2509371c9d4SSatish Balay     ridx = row % bs; \
2519371c9d4SSatish Balay     cidx = col % bs; \
2529371c9d4SSatish Balay     low  = 0; \
2539371c9d4SSatish Balay     high = nrow; \
254a30f8f8cSSatish Balay     while (high - low > 3) { \
255a30f8f8cSSatish Balay       t = (low + high) / 2; \
256a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
257a30f8f8cSSatish Balay       else low = t; \
258a30f8f8cSSatish Balay     } \
259a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
260a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
261a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
262a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
263a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
264a30f8f8cSSatish Balay         else *bap = value; \
265a30f8f8cSSatish Balay         goto b_noinsert; \
266a30f8f8cSSatish Balay       } \
267a30f8f8cSSatish Balay     } \
268a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2695f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
270fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
271a30f8f8cSSatish Balay     N = nrow++ - 1; \
272a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2759566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
276a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
277a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
278e56f5c9eSBarry Smith     B->nonzerostate++; \
279a30f8f8cSSatish Balay   b_noinsert:; \
280a30f8f8cSSatish Balay     bilen[brow] = nrow; \
281a8f51744SPierre Jolivet   } while (0)
282a30f8f8cSSatish Balay 
283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
284da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
285a30f8f8cSSatish Balay */
28666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
287d71ae5a4SJacob Faibussowitsch {
288a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
289a30f8f8cSSatish Balay   MatScalar     value;
290ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2911302d50aSBarry Smith   PetscInt      i, j, row, col;
292d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
293d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
294d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
295a30f8f8cSSatish Balay 
296a30f8f8cSSatish Balay   /* Some Variables required in the macro */
297a30f8f8cSSatish Balay   Mat           A     = baij->A;
298a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)(A)->data;
2991302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
300a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   Mat          B     = baij->B;
303a30f8f8cSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
3041302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
305a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
306a30f8f8cSSatish Balay 
3071302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3081302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
309a30f8f8cSSatish Balay   MatScalar *ap, *bap;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   /* for stash */
3120298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3130298fd71SBarry Smith   MatScalar *v_loc = NULL;
314a30f8f8cSSatish Balay 
315a30f8f8cSSatish Balay   PetscFunctionBegin;
316a30f8f8cSSatish Balay   if (!baij->donotstash) {
31759ffdab8SBarry Smith     if (n > baij->n_loc) {
3189566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3219566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32226fbe8dcSKarl Rupp 
32359ffdab8SBarry Smith       baij->n_loc = n;
32459ffdab8SBarry Smith     }
32559ffdab8SBarry Smith     in_loc = baij->in_loc;
32659ffdab8SBarry Smith     v_loc  = baij->v_loc;
327a30f8f8cSSatish Balay   }
328a30f8f8cSSatish Balay 
329a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
330a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3315f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
332a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
333a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
334a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33501b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
33601b2bd88SHong Zhang           if (a->ignore_ltriangular) {
33701b2bd88SHong Zhang             continue; /* ignore lower triangular blocks */
33826fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33901b2bd88SHong Zhang         }
340a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
341a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3429371c9d4SSatish Balay           brow = row / bs;
3439371c9d4SSatish Balay           bcol = col / bs;
344a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
345db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
346db4deed7SKarl Rupp           else value = v[i + j * m];
347d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3489566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
349f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
350f7d195e4SLawrence Mitchell           continue;
351f7d195e4SLawrence Mitchell         } else {
352f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
353f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
354a30f8f8cSSatish Balay           if (mat->was_assembled) {
35548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
357eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35871730473SSatish Balay             col = col - 1;
359a30f8f8cSSatish Balay #else
36071730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
361a30f8f8cSSatish Balay #endif
362f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) {
3639566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
364a30f8f8cSSatish Balay               col = in[j];
365a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
366a30f8f8cSSatish Balay               B     = baij->B;
367a30f8f8cSSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
3689371c9d4SSatish Balay               bimax = b->imax;
3699371c9d4SSatish Balay               bi    = b->i;
3709371c9d4SSatish Balay               bilen = b->ilen;
3719371c9d4SSatish Balay               bj    = b->j;
372a30f8f8cSSatish Balay               ba    = b->a;
37371730473SSatish Balay             } else col += in[j] % bs;
374a30f8f8cSSatish Balay           } else col = in[j];
375db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
376db4deed7SKarl Rupp           else value = v[i + j * m];
377d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3789566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
379a30f8f8cSSatish Balay         }
380a30f8f8cSSatish Balay       }
381a30f8f8cSSatish Balay     } else { /* off processor entry */
3825f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
383a30f8f8cSSatish Balay       if (!baij->donotstash) {
3845080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
385a30f8f8cSSatish Balay         n_loc          = 0;
386a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
387f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
388a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
389a30f8f8cSSatish Balay           if (roworiented) {
390a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
391a30f8f8cSSatish Balay           } else {
392a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
393a30f8f8cSSatish Balay           }
394a30f8f8cSSatish Balay           n_loc++;
395a30f8f8cSSatish Balay         }
3969566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
397a30f8f8cSSatish Balay       }
398a30f8f8cSSatish Balay     }
399a30f8f8cSSatish Balay   }
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
404d71ae5a4SJacob Faibussowitsch {
40536bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40636bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40736bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40836bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40936bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
41036bd2089SBarry Smith   const PetscScalar *value       = v;
41136bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
41236bd2089SBarry Smith 
41336bd2089SBarry Smith   PetscFunctionBegin;
41436bd2089SBarry Smith   if (col < row) {
4153ba16761SJacob Faibussowitsch     if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41636bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
41736bd2089SBarry Smith   }
41836bd2089SBarry Smith   rp    = aj + ai[row];
41936bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
42036bd2089SBarry Smith   rmax  = imax[row];
42136bd2089SBarry Smith   nrow  = ailen[row];
42236bd2089SBarry Smith   value = v;
42336bd2089SBarry Smith   low   = 0;
42436bd2089SBarry Smith   high  = nrow;
42536bd2089SBarry Smith 
42636bd2089SBarry Smith   while (high - low > 7) {
42736bd2089SBarry Smith     t = (low + high) / 2;
42836bd2089SBarry Smith     if (rp[t] > col) high = t;
42936bd2089SBarry Smith     else low = t;
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   for (i = low; i < high; i++) {
43236bd2089SBarry Smith     if (rp[i] > col) break;
43336bd2089SBarry Smith     if (rp[i] == col) {
43436bd2089SBarry Smith       bap = ap + bs2 * i;
43536bd2089SBarry Smith       if (roworiented) {
43636bd2089SBarry Smith         if (is == ADD_VALUES) {
43736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
438ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43936bd2089SBarry Smith           }
44036bd2089SBarry Smith         } else {
44136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
442ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44336bd2089SBarry Smith           }
44436bd2089SBarry Smith         }
44536bd2089SBarry Smith       } else {
44636bd2089SBarry Smith         if (is == ADD_VALUES) {
44736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
448ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44936bd2089SBarry Smith           }
45036bd2089SBarry Smith         } else {
45136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
452ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45336bd2089SBarry Smith           }
45436bd2089SBarry Smith         }
45536bd2089SBarry Smith       }
45636bd2089SBarry Smith       goto noinsert2;
45736bd2089SBarry Smith     }
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4605f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
46136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4629371c9d4SSatish Balay   N = nrow++ - 1;
4639371c9d4SSatish Balay   high++;
46436bd2089SBarry Smith   /* shift up all the later entries in this row */
4659566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4669566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46736bd2089SBarry Smith   rp[i] = col;
46836bd2089SBarry Smith   bap   = ap + bs2 * i;
46936bd2089SBarry Smith   if (roworiented) {
47036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
471ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
47236bd2089SBarry Smith     }
47336bd2089SBarry Smith   } else {
47436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
475ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47636bd2089SBarry Smith     }
47736bd2089SBarry Smith   }
47836bd2089SBarry Smith noinsert2:;
47936bd2089SBarry Smith   ailen[row] = nrow;
4803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48136bd2089SBarry Smith }
48236bd2089SBarry Smith 
48336bd2089SBarry Smith /*
48436bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48536bd2089SBarry Smith */
486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
487d71ae5a4SJacob Faibussowitsch {
48836bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48936bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
49036bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
49136bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
49236bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49336bd2089SBarry Smith   const PetscScalar *value       = v;
49436bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49536bd2089SBarry Smith 
49636bd2089SBarry Smith   PetscFunctionBegin;
49736bd2089SBarry Smith   rp    = aj + ai[row];
49836bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49936bd2089SBarry Smith   rmax  = imax[row];
50036bd2089SBarry Smith   nrow  = ailen[row];
50136bd2089SBarry Smith   low   = 0;
50236bd2089SBarry Smith   high  = nrow;
50336bd2089SBarry Smith   value = v;
50436bd2089SBarry Smith   while (high - low > 7) {
50536bd2089SBarry Smith     t = (low + high) / 2;
50636bd2089SBarry Smith     if (rp[t] > col) high = t;
50736bd2089SBarry Smith     else low = t;
50836bd2089SBarry Smith   }
50936bd2089SBarry Smith   for (i = low; i < high; i++) {
51036bd2089SBarry Smith     if (rp[i] > col) break;
51136bd2089SBarry Smith     if (rp[i] == col) {
51236bd2089SBarry Smith       bap = ap + bs2 * i;
51336bd2089SBarry Smith       if (roworiented) {
51436bd2089SBarry Smith         if (is == ADD_VALUES) {
51536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
516ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51736bd2089SBarry Smith           }
51836bd2089SBarry Smith         } else {
51936bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
520ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
52136bd2089SBarry Smith           }
52236bd2089SBarry Smith         }
52336bd2089SBarry Smith       } else {
52436bd2089SBarry Smith         if (is == ADD_VALUES) {
52536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
526ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52736bd2089SBarry Smith             bap += bs;
52836bd2089SBarry Smith           }
52936bd2089SBarry Smith         } else {
53036bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
531ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
53236bd2089SBarry Smith             bap += bs;
53336bd2089SBarry Smith           }
53436bd2089SBarry Smith         }
53536bd2089SBarry Smith       }
53636bd2089SBarry Smith       goto noinsert2;
53736bd2089SBarry Smith     }
53836bd2089SBarry Smith   }
53936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5405f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
54136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5429371c9d4SSatish Balay   N = nrow++ - 1;
5439371c9d4SSatish Balay   high++;
54436bd2089SBarry Smith   /* shift up all the later entries in this row */
5459566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5469566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54736bd2089SBarry Smith   rp[i] = col;
54836bd2089SBarry Smith   bap   = ap + bs2 * i;
54936bd2089SBarry Smith   if (roworiented) {
55036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
551ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
55236bd2089SBarry Smith     }
55336bd2089SBarry Smith   } else {
55436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
555ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55636bd2089SBarry Smith     }
55736bd2089SBarry Smith   }
55836bd2089SBarry Smith noinsert2:;
55936bd2089SBarry Smith   ailen[row] = nrow;
5603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56136bd2089SBarry Smith }
56236bd2089SBarry Smith 
56336bd2089SBarry Smith /*
56436bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56536bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56636bd2089SBarry Smith */
56766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
568d71ae5a4SJacob Faibussowitsch {
5690880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
570f15d580aSBarry Smith   const MatScalar *value;
571f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
572ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
573899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
574476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
575476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5760880e062SHong Zhang 
577a30f8f8cSSatish Balay   PetscFunctionBegin;
5780880e062SHong Zhang   if (!barray) {
5799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5800880e062SHong Zhang     baij->barray = barray;
5810880e062SHong Zhang   }
5820880e062SHong Zhang 
5830880e062SHong Zhang   if (roworiented) {
5840880e062SHong Zhang     stepval = (n - 1) * bs;
5850880e062SHong Zhang   } else {
5860880e062SHong Zhang     stepval = (m - 1) * bs;
5870880e062SHong Zhang   }
5880880e062SHong Zhang   for (i = 0; i < m; i++) {
5890880e062SHong Zhang     if (im[i] < 0) continue;
5906bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5910880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5920880e062SHong Zhang       row = im[i] - rstart;
5930880e062SHong Zhang       for (j = 0; j < n; j++) {
594f3f98c53SJed Brown         if (im[i] > in[j]) {
595f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
596e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
597f3f98c53SJed Brown         }
5980880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5990880e062SHong Zhang         if ((roworiented) && (n == 1)) {
600f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
6010880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
602f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6030880e062SHong Zhang         } else { /* Here a copy is required */
6040880e062SHong Zhang           if (roworiented) {
6050880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6060880e062SHong Zhang           } else {
6070880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6080880e062SHong Zhang           }
6090880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
610ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6110880e062SHong Zhang           }
6120880e062SHong Zhang           barray -= bs2;
6130880e062SHong Zhang         }
6140880e062SHong Zhang 
6150880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6160880e062SHong Zhang           col = in[j] - cstart;
6179566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
618f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
619f7d195e4SLawrence Mitchell           continue;
620f7d195e4SLawrence Mitchell         } else {
621f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6220880e062SHong Zhang           if (mat->was_assembled) {
62348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6240880e062SHong Zhang 
6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
6260880e062SHong Zhang   #if defined(PETSC_USE_CTABLE)
6279371c9d4SSatish Balay             {
6289371c9d4SSatish Balay               PetscInt data;
629eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
63008401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
6310880e062SHong Zhang             }
6320880e062SHong Zhang   #else
63308401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
6340880e062SHong Zhang   #endif
6350880e062SHong Zhang #endif
6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
637eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
6380880e062SHong Zhang             col = (col - 1) / bs;
6390880e062SHong Zhang #else
6400880e062SHong Zhang             col = (baij->colmap[in[j]] - 1) / bs;
6410880e062SHong Zhang #endif
642f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
6439566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6440880e062SHong Zhang               col = in[j];
6450880e062SHong Zhang             }
64626fbe8dcSKarl Rupp           } else col = in[j];
6479566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6480880e062SHong Zhang         }
6490880e062SHong Zhang       }
6500880e062SHong Zhang     } else {
6515f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6520880e062SHong Zhang       if (!baij->donotstash) {
6530880e062SHong Zhang         if (roworiented) {
6549566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6550880e062SHong Zhang         } else {
6569566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6570880e062SHong Zhang         }
6580880e062SHong Zhang       }
6590880e062SHong Zhang     }
6600880e062SHong Zhang   }
6613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
66466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
665d71ae5a4SJacob Faibussowitsch {
666f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
667d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
668d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay   PetscFunctionBegin;
671a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
67254c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
67354c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
674a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
675a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
676a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
67754c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
67854c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
679a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
680a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
6819566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
682a30f8f8cSSatish Balay         } else {
68348a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
685eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
686a30f8f8cSSatish Balay           data--;
687a30f8f8cSSatish Balay #else
688a30f8f8cSSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
689a30f8f8cSSatish Balay #endif
690a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
691a30f8f8cSSatish Balay           else {
692a30f8f8cSSatish Balay             col = data + idxn[j] % bs;
6939566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
694a30f8f8cSSatish Balay           }
695a30f8f8cSSatish Balay         }
696a30f8f8cSSatish Balay       }
697f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
698a30f8f8cSSatish Balay   }
6993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700a30f8f8cSSatish Balay }
701a30f8f8cSSatish Balay 
70266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
703d71ae5a4SJacob Faibussowitsch {
704a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
705a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
706a30f8f8cSSatish Balay 
707a30f8f8cSSatish Balay   PetscFunctionBegin;
708a30f8f8cSSatish Balay   if (baij->size == 1) {
7099566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
710a30f8f8cSSatish Balay   } else {
711a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
7129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
7139566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
7149371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7159371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
7169566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7179371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7189371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
7191c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7208f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7219566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7220b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7230b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7240b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
7250b8dc8d2SHong Zhang       PetscReal    *rsum, *rsum2, vabs;
726899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
727d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7280b8dc8d2SHong Zhang       MatScalar    *v;
7290b8dc8d2SHong Zhang 
7309566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2));
7319566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
7320b8dc8d2SHong Zhang       /* Amat */
7339371c9d4SSatish Balay       v  = amat->a;
7349371c9d4SSatish Balay       jj = amat->j;
7350b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7360b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7370b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7380b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7399371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7409371c9d4SSatish Balay           jj++;
7410b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7420b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7439371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7449371c9d4SSatish Balay               v++;
7450b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7460b8dc8d2SHong Zhang               /* non-diagonal block */
7470b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7480b8dc8d2SHong Zhang             }
7490b8dc8d2SHong Zhang           }
7500b8dc8d2SHong Zhang         }
7519566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7520b8dc8d2SHong Zhang       }
7530b8dc8d2SHong Zhang       /* Bmat */
7549371c9d4SSatish Balay       v  = bmat->a;
7559371c9d4SSatish Balay       jj = bmat->j;
7560b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7570b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7580b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7590b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7609371c9d4SSatish Balay           gcol = bs * garray[*jj];
7619371c9d4SSatish Balay           jj++;
7620b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7630b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7649371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7659371c9d4SSatish Balay               v++;
7660b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7670b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7680b8dc8d2SHong Zhang             }
7690b8dc8d2SHong Zhang           }
7700b8dc8d2SHong Zhang         }
7719566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7720b8dc8d2SHong Zhang       }
7731c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7740b8dc8d2SHong Zhang       *norm = 0.0;
775d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
7760b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7770b8dc8d2SHong Zhang       }
7789566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum, rsum2));
779f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
780a30f8f8cSSatish Balay   }
7813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
782a30f8f8cSSatish Balay }
783a30f8f8cSSatish Balay 
78466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
785d71ae5a4SJacob Faibussowitsch {
786a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7871302d50aSBarry Smith   PetscInt      nstash, reallocs;
788a30f8f8cSSatish Balay 
789a30f8f8cSSatish Balay   PetscFunctionBegin;
7903ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
791a30f8f8cSSatish Balay 
7929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7949566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7959566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7969566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7979566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
799a30f8f8cSSatish Balay }
800a30f8f8cSSatish Balay 
80166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
802d71ae5a4SJacob Faibussowitsch {
803a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
804a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
80513f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
806e44c0bd4SBarry Smith   PetscInt     *row, *col;
807ace3abfcSBarry Smith   PetscBool     other_disassembled;
80813f74950SBarry Smith   PetscMPIInt   n;
809ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
810a30f8f8cSSatish Balay   MatScalar    *val;
811a30f8f8cSSatish Balay 
81291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
813a30f8f8cSSatish Balay   PetscFunctionBegin;
8144cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
815a30f8f8cSSatish Balay     while (1) {
8169566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
817a30f8f8cSSatish Balay       if (!flg) break;
818a30f8f8cSSatish Balay 
819a30f8f8cSSatish Balay       for (i = 0; i < n;) {
820a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
82126fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
82226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
82326fbe8dcSKarl Rupp         }
824a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
825a30f8f8cSSatish Balay         else ncols = n - i;
826a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8279566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
828a30f8f8cSSatish Balay         i = j;
829a30f8f8cSSatish Balay       }
830a30f8f8cSSatish Balay     }
8319566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
832a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
8335e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
834a30f8f8cSSatish Balay        restore the original flags */
835a30f8f8cSSatish Balay     r1 = baij->roworiented;
836a30f8f8cSSatish Balay     r2 = a->roworiented;
83791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
83826fbe8dcSKarl Rupp 
839a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
840a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
84126fbe8dcSKarl Rupp 
84291c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
843a30f8f8cSSatish Balay     while (1) {
8449566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
845a30f8f8cSSatish Balay       if (!flg) break;
846a30f8f8cSSatish Balay 
847a30f8f8cSSatish Balay       for (i = 0; i < n;) {
848a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
84926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
85026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
85126fbe8dcSKarl Rupp         }
852a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
853a30f8f8cSSatish Balay         else ncols = n - i;
8549566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
855a30f8f8cSSatish Balay         i = j;
856a30f8f8cSSatish Balay       }
857a30f8f8cSSatish Balay     }
8589566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
85926fbe8dcSKarl Rupp 
860a30f8f8cSSatish Balay     baij->roworiented = r1;
861a30f8f8cSSatish Balay     a->roworiented    = r2;
86226fbe8dcSKarl Rupp 
86391c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */
864a30f8f8cSSatish Balay   }
865a30f8f8cSSatish Balay 
8669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
868a30f8f8cSSatish Balay 
869a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
8706aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
871a30f8f8cSSatish Balay   /*
872a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
873a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
874a30f8f8cSSatish Balay   */
875a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8765f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
87748a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
878a30f8f8cSSatish Balay   }
879a30f8f8cSSatish Balay 
8809371c9d4SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ }
8819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
883a30f8f8cSSatish Balay 
8849566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
88526fbe8dcSKarl Rupp 
886f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8874f9cfa9eSBarry Smith 
8884f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
889f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
890e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8911c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
892e56f5c9eSBarry Smith   }
8933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8979804daf3SBarry Smith #include <petscdraw.h>
898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
899d71ae5a4SJacob Faibussowitsch {
900a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
901d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
9027da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
903ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
904b0a32e0cSBarry Smith   PetscViewer       sviewer;
905f3ef73ceSBarry Smith   PetscViewerFormat format;
906a30f8f8cSSatish Balay 
907a30f8f8cSSatish Balay   PetscFunctionBegin;
9089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
9099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
91032077d6dSBarry Smith   if (iascii) {
9119566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
912456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
913a30f8f8cSSatish Balay       MatInfo info;
9149566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
9159566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9169566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9179371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
9189371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
9199566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9209566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9219566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9229566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9239566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9249566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9259566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9269566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9273ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
928fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9299566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9303ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
931c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9323ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
933a30f8f8cSSatish Balay     }
934a30f8f8cSSatish Balay   }
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay   if (isdraw) {
937b0a32e0cSBarry Smith     PetscDraw draw;
938ace3abfcSBarry Smith     PetscBool isnull;
9399566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9409566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9413ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
942a30f8f8cSSatish Balay   }
943a30f8f8cSSatish Balay 
9447da1fb6eSBarry Smith   {
945a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
946a30f8f8cSSatish Balay     Mat           A;
94765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
94865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
949d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
950a30f8f8cSSatish Balay     MatScalar    *a;
9513e219373SBarry Smith     const char   *matname;
952a30f8f8cSSatish Balay 
953f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9549566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
955dd400576SPatrick Sanan     if (rank == 0) {
9569566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
957a30f8f8cSSatish Balay     } else {
9589566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
959a30f8f8cSSatish Balay     }
9609566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9619566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
963a30f8f8cSSatish Balay 
964a30f8f8cSSatish Balay     /* copy over the A part */
96565d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9669371c9d4SSatish Balay     ai   = Aloc->i;
9679371c9d4SSatish Balay     aj   = Aloc->j;
9689371c9d4SSatish Balay     a    = Aloc->a;
9699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
970a30f8f8cSSatish Balay 
971a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
972e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
97326fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
974a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
975e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
976a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9779566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
97826fbe8dcSKarl Rupp           col++;
97926fbe8dcSKarl Rupp           a += bs;
980a30f8f8cSSatish Balay         }
981a30f8f8cSSatish Balay       }
982a30f8f8cSSatish Balay     }
983a30f8f8cSSatish Balay     /* copy over the B part */
98465d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9859371c9d4SSatish Balay     ai   = Bloc->i;
9869371c9d4SSatish Balay     aj   = Bloc->j;
9879371c9d4SSatish Balay     a    = Bloc->a;
988a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
989e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
99026fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
991a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
992a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
993a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9949566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
99526fbe8dcSKarl Rupp           col++;
99626fbe8dcSKarl Rupp           a += bs;
997a30f8f8cSSatish Balay         }
998a30f8f8cSSatish Balay       }
999a30f8f8cSSatish Balay     }
10009566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
10019566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
10029566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
1003a30f8f8cSSatish Balay     /*
1004a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
1005b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
1006a30f8f8cSSatish Balay     */
10079566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
100823a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1009dd400576SPatrick Sanan     if (rank == 0) {
1010f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname));
1011f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer));
1012a30f8f8cSSatish Balay     }
10139566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
10149566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
1015a30f8f8cSSatish Balay   }
10163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1017a30f8f8cSSatish Balay }
1018a30f8f8cSSatish Balay 
1019618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1020618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1021d1654148SHong Zhang 
102266976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1023d71ae5a4SJacob Faibussowitsch {
1024ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1025a30f8f8cSSatish Balay 
1026a30f8f8cSSatish Balay   PetscFunctionBegin;
10279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10289566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10309566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1031d1654148SHong Zhang   if (iascii || isdraw || issocket) {
10329566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
10331baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1035a30f8f8cSSatish Balay }
1036a30f8f8cSSatish Balay 
1037*789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX)
1038*789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1039d71ae5a4SJacob Faibussowitsch {
1040547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1041eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10426de40e93SBarry Smith   PetscScalar       *from;
10436de40e93SBarry Smith   const PetscScalar *x;
1044547795f9SHong Zhang 
1045547795f9SHong Zhang   PetscFunctionBegin;
1046547795f9SHong Zhang   /* diagonal part */
10479566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1048629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1049629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1050629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1051547795f9SHong Zhang 
1052547795f9SHong Zhang   /* subdiagonal part */
10535f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10549566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1055547795f9SHong Zhang 
1056547795f9SHong Zhang   /* copy x into the vec slvec0 */
10579566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10589566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1059547795f9SHong Zhang 
10609566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10629566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1063547795f9SHong Zhang 
10649566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1066547795f9SHong Zhang   /* supperdiagonal part */
10679566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1069547795f9SHong Zhang }
1070*789afff4SPierre Jolivet #endif
1071547795f9SHong Zhang 
107266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1073d71ae5a4SJacob Faibussowitsch {
1074a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1075eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1076d9ca1df4SBarry Smith   PetscScalar       *from;
1077d9ca1df4SBarry Smith   const PetscScalar *x;
1078a9d4b620SHong Zhang 
1079a9d4b620SHong Zhang   PetscFunctionBegin;
1080a9d4b620SHong Zhang   /* diagonal part */
10819566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1082629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1083629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1084629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1085a9d4b620SHong Zhang 
1086a9d4b620SHong Zhang   /* subdiagonal part */
10879566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1088fc165ae2SBarry Smith 
1089a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10909566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10919566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1092a9d4b620SHong Zhang 
10939566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1096fc165ae2SBarry Smith 
10979566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10989566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1099a9d4b620SHong Zhang   /* supperdiagonal part */
11009566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
11013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1102a9d4b620SHong Zhang }
1103a9d4b620SHong Zhang 
110466976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
110566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1106d71ae5a4SJacob Faibussowitsch {
1107eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1108eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1109629a200eSBarry Smith   PetscScalar       *from;
1110eb1ec7c1SStefano Zampini   const PetscScalar *x;
1111eb1ec7c1SStefano Zampini 
1112eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1113eb1ec7c1SStefano Zampini   /* diagonal part */
11149566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1115629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1116629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1117eb1ec7c1SStefano Zampini 
1118eb1ec7c1SStefano Zampini   /* subdiagonal part */
11195f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
11209566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1121eb1ec7c1SStefano Zampini 
1122eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11239566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11249566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11259566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1127eb1ec7c1SStefano Zampini 
11289566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11309566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1131eb1ec7c1SStefano Zampini 
1132eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11339566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1135eb1ec7c1SStefano Zampini }
113666976f2fSJacob Faibussowitsch #endif
1137eb1ec7c1SStefano Zampini 
113866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1139d71ae5a4SJacob Faibussowitsch {
1140de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1141d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1142629a200eSBarry Smith   PetscScalar       *from;
1143d9ca1df4SBarry Smith   const PetscScalar *x;
1144a9d4b620SHong Zhang 
1145a9d4b620SHong Zhang   PetscFunctionBegin;
1146a9d4b620SHong Zhang   /* diagonal part */
11479566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1148629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1149629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1150a9d4b620SHong Zhang 
1151a9d4b620SHong Zhang   /* subdiagonal part */
11529566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1153a9d4b620SHong Zhang 
1154a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11559566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11569566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11579566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1159a9d4b620SHong Zhang 
11609566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1163a9d4b620SHong Zhang 
1164a9d4b620SHong Zhang   /* supperdiagonal part */
11659566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1167a9d4b620SHong Zhang }
1168a9d4b620SHong Zhang 
1169a30f8f8cSSatish Balay /*
1170a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1171a30f8f8cSSatish Balay    diagonal block
1172a30f8f8cSSatish Balay */
117366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1174d71ae5a4SJacob Faibussowitsch {
1175a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1176a30f8f8cSSatish Balay 
1177a30f8f8cSSatish Balay   PetscFunctionBegin;
117808401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11799566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1181a30f8f8cSSatish Balay }
1182a30f8f8cSSatish Balay 
118366976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1184d71ae5a4SJacob Faibussowitsch {
1185a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1186a30f8f8cSSatish Balay 
1187a30f8f8cSSatish Balay   PetscFunctionBegin;
11889566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11899566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1191a30f8f8cSSatish Balay }
1192a30f8f8cSSatish Balay 
119366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1194d71ae5a4SJacob Faibussowitsch {
1195d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1196d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1197d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1198d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1199899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1200d0d4cfc2SHong Zhang 
1201a30f8f8cSSatish Balay   PetscFunctionBegin;
12025f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1203d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1204d0d4cfc2SHong Zhang 
1205d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1206d0d4cfc2SHong Zhang     /*
1207d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1208d0d4cfc2SHong Zhang     */
1209d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1210d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1211d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1212d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1213d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
121426fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1215d0d4cfc2SHong Zhang     }
12169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1217d0d4cfc2SHong Zhang   }
1218d0d4cfc2SHong Zhang 
12195f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1220d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1221d0d4cfc2SHong Zhang 
12229371c9d4SSatish Balay   pvA = &vworkA;
12239371c9d4SSatish Balay   pcA = &cworkA;
12249371c9d4SSatish Balay   pvB = &vworkB;
12259371c9d4SSatish Balay   pcB = &cworkB;
12269371c9d4SSatish Balay   if (!v) {
12279371c9d4SSatish Balay     pvA = NULL;
12289371c9d4SSatish Balay     pvB = NULL;
12299371c9d4SSatish Balay   }
12309371c9d4SSatish Balay   if (!idx) {
12319371c9d4SSatish Balay     pcA = NULL;
12329371c9d4SSatish Balay     if (!v) pcB = NULL;
12339371c9d4SSatish Balay   }
12349566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12359566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1236d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1237d0d4cfc2SHong Zhang 
1238d0d4cfc2SHong Zhang   cmap = mat->garray;
1239d0d4cfc2SHong Zhang   if (v || idx) {
1240d0d4cfc2SHong Zhang     if (nztot) {
1241d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1242d0d4cfc2SHong Zhang       PetscInt imark = -1;
1243d0d4cfc2SHong Zhang       if (v) {
1244d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1245d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1246d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1247d0d4cfc2SHong Zhang           else break;
1248d0d4cfc2SHong Zhang         }
1249d0d4cfc2SHong Zhang         imark = i;
1250d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1251d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1252d0d4cfc2SHong Zhang       }
1253d0d4cfc2SHong Zhang       if (idx) {
1254d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1255d0d4cfc2SHong Zhang         if (imark > -1) {
1256ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1257d0d4cfc2SHong Zhang         } else {
1258d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
125926fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1260d0d4cfc2SHong Zhang             else break;
1261d0d4cfc2SHong Zhang           }
1262d0d4cfc2SHong Zhang           imark = i;
1263d0d4cfc2SHong Zhang         }
1264d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1265d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1266d0d4cfc2SHong Zhang       }
1267d0d4cfc2SHong Zhang     } else {
1268f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1269f4259b30SLisandro Dalcin       if (v) *v = NULL;
1270d0d4cfc2SHong Zhang     }
1271d0d4cfc2SHong Zhang   }
1272d0d4cfc2SHong Zhang   *nz = nztot;
12739566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12749566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1276a30f8f8cSSatish Balay }
1277a30f8f8cSSatish Balay 
127866976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1279d71ae5a4SJacob Faibussowitsch {
1280a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1281a30f8f8cSSatish Balay 
1282a30f8f8cSSatish Balay   PetscFunctionBegin;
12835f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1284a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1286a30f8f8cSSatish Balay }
1287a30f8f8cSSatish Balay 
128866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1289d71ae5a4SJacob Faibussowitsch {
1290d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1291d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1292d0d4cfc2SHong Zhang 
1293d0d4cfc2SHong Zhang   PetscFunctionBegin;
1294d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1296d0d4cfc2SHong Zhang }
129766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1298d71ae5a4SJacob Faibussowitsch {
1299d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1300d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1301d0d4cfc2SHong Zhang 
1302d0d4cfc2SHong Zhang   PetscFunctionBegin;
1303d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1305d0d4cfc2SHong Zhang }
1306d0d4cfc2SHong Zhang 
130766976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1308d71ae5a4SJacob Faibussowitsch {
13095f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
13105f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
13112726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
13122726fb6dSPierre Jolivet 
13139566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
13149566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
13155f80ce2aSJacob Faibussowitsch   }
13163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13172726fb6dSPierre Jolivet }
13182726fb6dSPierre Jolivet 
131966976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1320d71ae5a4SJacob Faibussowitsch {
132199cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
132299cafbc1SBarry Smith 
132399cafbc1SBarry Smith   PetscFunctionBegin;
13249566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13259566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
132799cafbc1SBarry Smith }
132899cafbc1SBarry Smith 
132966976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1330d71ae5a4SJacob Faibussowitsch {
133199cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
133299cafbc1SBarry Smith 
133399cafbc1SBarry Smith   PetscFunctionBegin;
13349566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13359566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
133799cafbc1SBarry Smith }
133899cafbc1SBarry Smith 
13397dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
134036032a97SHong Zhang    Input: isrow       - distributed(parallel),
134136032a97SHong Zhang           iscol_local - locally owned (seq)
134236032a97SHong Zhang */
134366976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1344d71ae5a4SJacob Faibussowitsch {
13458f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13468f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
134736032a97SHong Zhang 
134836032a97SHong Zhang   PetscFunctionBegin;
134966976f2fSJacob Faibussowitsch   *flg = PETSC_FALSE;
13509566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13519566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
135266976f2fSJacob Faibussowitsch   if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13538f46ffcaSHong Zhang 
13549566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13559566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13568f46ffcaSHong Zhang 
13579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13599566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13609566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13619566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13629566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13638f46ffcaSHong Zhang 
13648f46ffcaSHong Zhang   nmatch = 0;
13658f46ffcaSHong Zhang   k      = 0;
13668f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13678f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13688f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13699371c9d4SSatish Balay         k = j;
13709371c9d4SSatish Balay         nmatch++;
13718f46ffcaSHong Zhang         break;
13728f46ffcaSHong Zhang       }
13738f46ffcaSHong Zhang     }
13748f46ffcaSHong Zhang   }
13759566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13769566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13779566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13789566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13791098a8e8SHong Zhang   if (nmatch < sz1) {
13801098a8e8SHong Zhang     *flg = PETSC_FALSE;
13811098a8e8SHong Zhang   } else {
13821098a8e8SHong Zhang     *flg = PETSC_TRUE;
13831098a8e8SHong Zhang   }
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13858f46ffcaSHong Zhang }
138636032a97SHong Zhang 
138766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1388d71ae5a4SJacob Faibussowitsch {
1389fdfbdca6SPierre Jolivet   Mat       C[2];
1390fdfbdca6SPierre Jolivet   IS        iscol_local, isrow_local;
1391fdfbdca6SPierre Jolivet   PetscInt  csize, csize_local, rsize;
1392fdfbdca6SPierre Jolivet   PetscBool isequal, issorted, isidentity = PETSC_FALSE;
139336032a97SHong Zhang 
139436032a97SHong Zhang   PetscFunctionBegin;
13959566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1396fdfbdca6SPierre Jolivet   PetscCall(ISGetLocalSize(isrow, &rsize));
139736032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13989566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13995f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
140036032a97SHong Zhang   } else {
14019566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
14029566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
1403fdfbdca6SPierre Jolivet     PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
14048f46ffcaSHong Zhang   }
1405fdfbdca6SPierre Jolivet   PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1406fdfbdca6SPierre Jolivet   if (!isequal) {
1407fdfbdca6SPierre Jolivet     PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1408fdfbdca6SPierre Jolivet     isidentity = (PetscBool)(mat->cmap->N == csize_local);
1409fdfbdca6SPierre Jolivet     if (!isidentity) {
1410fdfbdca6SPierre Jolivet       if (call == MAT_REUSE_MATRIX) {
1411fdfbdca6SPierre Jolivet         PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1412fdfbdca6SPierre Jolivet         PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1413fdfbdca6SPierre Jolivet       } else {
1414fdfbdca6SPierre Jolivet         PetscCall(ISAllGather(isrow, &isrow_local));
1415fdfbdca6SPierre Jolivet         PetscCall(ISSorted(isrow_local, &issorted));
1416fdfbdca6SPierre Jolivet         PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1417fdfbdca6SPierre Jolivet       }
1418fdfbdca6SPierre Jolivet     }
1419fdfbdca6SPierre Jolivet   }
14207dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
1421fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1422fdfbdca6SPierre Jolivet   if (!isequal && !isidentity) {
14238f46ffcaSHong Zhang     if (call == MAT_INITIAL_MATRIX) {
1424fdfbdca6SPierre Jolivet       IS       intersect;
1425fdfbdca6SPierre Jolivet       PetscInt ni;
1426fdfbdca6SPierre Jolivet 
1427fdfbdca6SPierre Jolivet       PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1428fdfbdca6SPierre Jolivet       PetscCall(ISGetLocalSize(intersect, &ni));
1429fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&intersect));
1430fdfbdca6SPierre Jolivet       PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1431fdfbdca6SPierre Jolivet     }
1432fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1433fdfbdca6SPierre Jolivet     PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1434fdfbdca6SPierre Jolivet     PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1435fdfbdca6SPierre Jolivet     if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1436fdfbdca6SPierre Jolivet     else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1437fdfbdca6SPierre Jolivet     else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1438fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C));
1439fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C + 1));
1440fdfbdca6SPierre Jolivet   }
1441fdfbdca6SPierre Jolivet   if (call == MAT_INITIAL_MATRIX) {
1442fdfbdca6SPierre Jolivet     if (!isequal && !isidentity) {
1443fdfbdca6SPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1444fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&isrow_local));
1445fdfbdca6SPierre Jolivet     }
14469566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14488f46ffcaSHong Zhang   }
14493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14508f46ffcaSHong Zhang }
14518f46ffcaSHong Zhang 
145266976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1453d71ae5a4SJacob Faibussowitsch {
1454a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1455a30f8f8cSSatish Balay 
1456a30f8f8cSSatish Balay   PetscFunctionBegin;
14579566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1460a30f8f8cSSatish Balay }
1461a30f8f8cSSatish Balay 
146266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1463d71ae5a4SJacob Faibussowitsch {
1464a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1465a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14663966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1467a30f8f8cSSatish Balay 
1468a30f8f8cSSatish Balay   PetscFunctionBegin;
1469d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
147026fbe8dcSKarl Rupp 
14719566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
147226fbe8dcSKarl Rupp 
14739371c9d4SSatish Balay   isend[0] = info->nz_used;
14749371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14759371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14769371c9d4SSatish Balay   isend[3] = info->memory;
14779371c9d4SSatish Balay   isend[4] = info->mallocs;
147826fbe8dcSKarl Rupp 
14799566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
148026fbe8dcSKarl Rupp 
14819371c9d4SSatish Balay   isend[0] += info->nz_used;
14829371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14839371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14849371c9d4SSatish Balay   isend[3] += info->memory;
14859371c9d4SSatish Balay   isend[4] += info->mallocs;
1486a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1487a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1488a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1489a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1490a30f8f8cSSatish Balay     info->memory       = isend[3];
1491a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1492a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14931c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
149426fbe8dcSKarl Rupp 
1495a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1496a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1497a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1498a30f8f8cSSatish Balay     info->memory       = irecv[3];
1499a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1500a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
15011c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
150226fbe8dcSKarl Rupp 
1503a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1504a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1505a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1506a30f8f8cSSatish Balay     info->memory       = irecv[3];
1507a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
150898921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1509a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1510a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1511a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
15123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1513a30f8f8cSSatish Balay }
1514a30f8f8cSSatish Balay 
151566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1516d71ae5a4SJacob Faibussowitsch {
1517a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1518d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1519a30f8f8cSSatish Balay 
1520a30f8f8cSSatish Balay   PetscFunctionBegin;
1521e98b92d7SKris Buschelman   switch (op) {
1522512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1523e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
152428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1525a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1526c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1527e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
152843674050SBarry Smith     MatCheckPreallocated(A, 1);
15299566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15309566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1531e98b92d7SKris Buschelman     break;
1532e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
153343674050SBarry Smith     MatCheckPreallocated(A, 1);
15344e0d8c25SBarry Smith     a->roworiented = flg;
153526fbe8dcSKarl Rupp 
15369566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15379566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1538e98b92d7SKris Buschelman     break;
15398c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1540d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1541d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1542d71ae5a4SJacob Faibussowitsch     break;
1543d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1544d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1545d71ae5a4SJacob Faibussowitsch     break;
1546d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1547d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1548d71ae5a4SJacob Faibussowitsch     break;
1549d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
1550d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1551d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15520f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1553eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1554547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1555eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1556eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1557eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1558b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1559eb1ec7c1SStefano Zampini     }
15600f2140c7SStefano Zampini #endif
1561eeffb40dSHong Zhang     break;
1562ffa07934SHong Zhang   case MAT_SPD:
1563d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
1564d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1565d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1566eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1567eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1568eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1569eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1570eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1571eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1572eb1ec7c1SStefano Zampini     }
1573eb1ec7c1SStefano Zampini #endif
1574eeffb40dSHong Zhang     break;
157577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
157643674050SBarry Smith     MatCheckPreallocated(A, 1);
15779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1578eeffb40dSHong Zhang     break;
15799a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1580b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
15815f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric");
15829566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
158377e54ba9SKris Buschelman     break;
1584d71ae5a4SJacob Faibussowitsch   case MAT_SPD_ETERNAL:
1585d71ae5a4SJacob Faibussowitsch     break;
1586d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1587d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1588d71ae5a4SJacob Faibussowitsch     break;
1589d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1590d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1591d71ae5a4SJacob Faibussowitsch     break;
1592d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1593d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1594d71ae5a4SJacob Faibussowitsch     break;
1595d71ae5a4SJacob Faibussowitsch   default:
1596d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
1597a30f8f8cSSatish Balay   }
15983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1599a30f8f8cSSatish Balay }
1600a30f8f8cSSatish Balay 
160166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1602d71ae5a4SJacob Faibussowitsch {
1603a30f8f8cSSatish Balay   PetscFunctionBegin;
16047fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1605cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
16069566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1607cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
16089566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1609fc4dec0aSBarry Smith   }
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1611a30f8f8cSSatish Balay }
1612a30f8f8cSSatish Balay 
161366976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1614d71ae5a4SJacob Faibussowitsch {
1615a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1616a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
16175e90f9d9SHong Zhang   PetscInt      nv, m, n;
1618ace3abfcSBarry Smith   PetscBool     flg;
1619a30f8f8cSSatish Balay 
1620a30f8f8cSSatish Balay   PetscFunctionBegin;
1621a30f8f8cSSatish Balay   if (ll != rr) {
16229566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
16235f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1624a30f8f8cSSatish Balay   }
16253ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1626b3bf805bSHong Zhang 
16279566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
16285f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1629b3bf805bSHong Zhang 
16309566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
16315f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
16325e90f9d9SHong Zhang 
16339566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
16345e90f9d9SHong Zhang 
16355e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1636dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16375e90f9d9SHong Zhang 
16385e90f9d9SHong Zhang   /* scale the diagonal part */
1639dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1640a30f8f8cSSatish Balay 
16415e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
16429566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1643dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
16443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1645a30f8f8cSSatish Balay }
1646a30f8f8cSSatish Balay 
164766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1648d71ae5a4SJacob Faibussowitsch {
1649f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1650a30f8f8cSSatish Balay 
1651a30f8f8cSSatish Balay   PetscFunctionBegin;
16529566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1654a30f8f8cSSatish Balay }
1655a30f8f8cSSatish Balay 
16566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1657a30f8f8cSSatish Balay 
165866976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1659d71ae5a4SJacob Faibussowitsch {
1660a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1661a30f8f8cSSatish Balay   Mat           a, b, c, d;
1662ace3abfcSBarry Smith   PetscBool     flg;
1663a30f8f8cSSatish Balay 
1664a30f8f8cSSatish Balay   PetscFunctionBegin;
16659371c9d4SSatish Balay   a = matA->A;
16669371c9d4SSatish Balay   b = matA->B;
16679371c9d4SSatish Balay   c = matB->A;
16689371c9d4SSatish Balay   d = matB->B;
1669a30f8f8cSSatish Balay 
16709566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
167148a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
16721c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1674a30f8f8cSSatish Balay }
1675a30f8f8cSSatish Balay 
167666976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1677d71ae5a4SJacob Faibussowitsch {
16784c7a3774SStefano Zampini   PetscBool isbaij;
16793c896bc6SHong Zhang 
16803c896bc6SHong Zhang   PetscFunctionBegin;
16819566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16825f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16833c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16843c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16859566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16869566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16879566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16883c896bc6SHong Zhang   } else {
16894c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16904c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16914c7a3774SStefano Zampini 
16929566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16939566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16943c896bc6SHong Zhang   }
16959566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16973c896bc6SHong Zhang }
16983c896bc6SHong Zhang 
169966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1700d71ae5a4SJacob Faibussowitsch {
17014fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
17024fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
17034fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
17044fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
17054fe895cdSHong Zhang 
17064fe895cdSHong Zhang   PetscFunctionBegin;
17074fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17084fe895cdSHong Zhang     PetscScalar alpha = a;
17094fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
17104fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
17119566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1712792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
17134fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
17144fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
17159566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1716792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
17179566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1718ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
17199566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
17209566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
17219566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
17224fe895cdSHong Zhang   } else {
17234de5dceeSHong Zhang     Mat       B;
17244de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
17255f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
17269566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
17279566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
17289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
17299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
17309566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
17319566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
17329566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
17339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
17349566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
17359566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
17369566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
17379566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
17389566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
17399566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
17409566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
17419566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
17429566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
17439566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
17444fe895cdSHong Zhang   }
17453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17464fe895cdSHong Zhang }
17474fe895cdSHong Zhang 
174866976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1749d71ae5a4SJacob Faibussowitsch {
17501302d50aSBarry Smith   PetscInt  i;
1751afebec48SHong Zhang   PetscBool flg;
1752a5e6ed63SBarry Smith 
17536849ba73SBarry Smith   PetscFunctionBegin;
17549566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1755a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17569566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
175748a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17584dcd73b1SHong Zhang   }
17593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1760a5e6ed63SBarry Smith }
1761a5e6ed63SBarry Smith 
176266976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1763d71ae5a4SJacob Faibussowitsch {
17647d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17656f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17667d68702bSBarry Smith 
17677d68702bSBarry Smith   PetscFunctionBegin;
17686f33a894SBarry Smith   if (!Y->preallocated) {
17699566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17706f33a894SBarry Smith   } else if (!aij->nz) {
1771b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17729566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1773b83222d8SBarry Smith     aij->nonew = nonew;
17747d68702bSBarry Smith   }
17759566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17777d68702bSBarry Smith }
17787d68702bSBarry Smith 
177966976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d)
1780d71ae5a4SJacob Faibussowitsch {
17813b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
17823b49f96aSBarry Smith 
17833b49f96aSBarry Smith   PetscFunctionBegin;
17845f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
17859566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
17863b49f96aSBarry Smith   if (d) {
17873b49f96aSBarry Smith     PetscInt rstart;
17889566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
17893b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
17903b49f96aSBarry Smith   }
17913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17923b49f96aSBarry Smith }
17933b49f96aSBarry Smith 
179466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1795d71ae5a4SJacob Faibussowitsch {
1796a5b7ff6bSBarry Smith   PetscFunctionBegin;
1797a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1799a5b7ff6bSBarry Smith }
18003b49f96aSBarry Smith 
180117ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
180217ea310bSPierre Jolivet {
180317ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
180417ea310bSPierre Jolivet 
180517ea310bSPierre Jolivet   PetscFunctionBegin;
180617ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
180717ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
180817ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
180917ea310bSPierre Jolivet }
181017ea310bSPierre Jolivet 
18116cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer);
1812*789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]);
1813*789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
18146cff0a6bSPierre Jolivet 
18153964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1816a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1817a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1818a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
181997304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1820431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1821431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1822f4259b30SLisandro Dalcin                                        NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824f4259b30SLisandro Dalcin                                        NULL,
1825f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
182841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1829a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
183097304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1831a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1832a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1833a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1834a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
183597304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1836a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1837a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1838a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1839f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
184426cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1848f4259b30SLisandro Dalcin                                        NULL,
1849d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
18557dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1856d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1857a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18583c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1859f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1860a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18617d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1862f4259b30SLisandro Dalcin                                        NULL,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1872f4259b30SLisandro Dalcin                                        NULL,
1873a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18747dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1885f4259b30SLisandro Dalcin                                        NULL,
188628d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1887f4259b30SLisandro Dalcin                                        NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
18985bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1899f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
1906f4259b30SLisandro Dalcin                                        NULL,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
1909f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1910f4259b30SLisandro Dalcin                                        NULL,
1911f4259b30SLisandro Dalcin                                        NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
1913f4259b30SLisandro Dalcin                                        NULL,
1914f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
19172726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1918f4259b30SLisandro Dalcin                                        NULL,
1919f4259b30SLisandro Dalcin                                        /*104*/ NULL,
192099cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1921d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1922d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
192395936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1924f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1925f4259b30SLisandro Dalcin                                        NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        NULL,
19283b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1929f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1930f4259b30SLisandro Dalcin                                        NULL,
1931f4259b30SLisandro Dalcin                                        NULL,
1932f4259b30SLisandro Dalcin                                        NULL,
1933f4259b30SLisandro Dalcin                                        NULL,
1934f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1935f4259b30SLisandro Dalcin                                        NULL,
1936f4259b30SLisandro Dalcin                                        NULL,
1937f4259b30SLisandro Dalcin                                        NULL,
1938f4259b30SLisandro Dalcin                                        NULL,
1939f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1940f4259b30SLisandro Dalcin                                        NULL,
1941f4259b30SLisandro Dalcin                                        NULL,
1942f4259b30SLisandro Dalcin                                        NULL,
1943f4259b30SLisandro Dalcin                                        NULL,
1944f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1945f4259b30SLisandro Dalcin                                        NULL,
1946f4259b30SLisandro Dalcin                                        NULL,
1947f4259b30SLisandro Dalcin                                        NULL,
1948f4259b30SLisandro Dalcin                                        NULL,
1949f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1950f4259b30SLisandro Dalcin                                        NULL,
1951f4259b30SLisandro Dalcin                                        NULL,
1952f4259b30SLisandro Dalcin                                        NULL,
1953f4259b30SLisandro Dalcin                                        NULL,
195446533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
1955f4259b30SLisandro Dalcin                                        NULL,
1956f4259b30SLisandro Dalcin                                        NULL,
1957f4259b30SLisandro Dalcin                                        NULL,
1958f4259b30SLisandro Dalcin                                        NULL,
1959d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1960d70f29a3SPierre Jolivet                                        NULL,
1961d70f29a3SPierre Jolivet                                        NULL,
196299a7f59eSMark Adams                                        NULL,
196399a7f59eSMark Adams                                        NULL,
19647fb60732SBarry Smith                                        NULL,
1965dec0b466SHong Zhang                                        /*150*/ NULL,
1966eede4a3fSMark Adams                                        MatEliminateZeros_MPISBAIJ,
1967eede4a3fSMark Adams                                        NULL};
1968a30f8f8cSSatish Balay 
196966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1970d71ae5a4SJacob Faibussowitsch {
1971476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1972535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19735d2a9ed1SStefano Zampini   PetscMPIInt   size;
1974a23d5eceSKris Buschelman 
1975a23d5eceSKris Buschelman   PetscFunctionBegin;
1976ad79cf63SBarry Smith   if (B->hash_active) {
1977aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1978ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1979ad79cf63SBarry Smith   }
1980ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
19819566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
19829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19855f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19865f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1987899cda47SBarry Smith 
1988d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1989d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19905f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1991a23d5eceSKris Buschelman 
1992d0f46423SBarry Smith   B->rmap->bs = bs;
1993a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1994a23d5eceSKris Buschelman   b->mbs      = mbs;
1995a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1996de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1997de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1998a23d5eceSKris Buschelman 
1999ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2000d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2001d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2002a23d5eceSKris Buschelman 
2003d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2004d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2005a23d5eceSKris Buschelman 
2006cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2007eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2008cb7b82ddSBarry Smith #else
20099566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2010cb7b82ddSBarry Smith #endif
20119566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
20129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
20139566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
20149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
20159566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
20169566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
20179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
20189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
20199566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
2020cb7b82ddSBarry Smith 
20219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2022c508b908SBarry Smith 
2023c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
20249566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
20259566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
20269566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
20279566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2028c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2029cb7b82ddSBarry Smith 
2030c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2031ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
20329566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
20339566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
20349566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
2035c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2036a23d5eceSKris Buschelman 
20379566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
20389566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
203926fbe8dcSKarl Rupp 
2040526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2041cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2042cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
20433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2044a23d5eceSKris Buschelman }
2045a23d5eceSKris Buschelman 
204666976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2047d71ae5a4SJacob Faibussowitsch {
204802106b30SBarry Smith   PetscInt        m, rstart, cend;
2049f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2050f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2051f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2052bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
20533bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2054dfb205c3SBarry Smith 
2055dfb205c3SBarry Smith   PetscFunctionBegin;
20565f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
20579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
20589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
20599566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
20609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
20619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2062dfb205c3SBarry Smith   m      = B->rmap->n / bs;
2063dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
2064dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
2065dfb205c3SBarry Smith 
20665f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
20679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2068dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2069dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20705f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20714cf0e950SBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */
2072dfb205c3SBarry Smith     JJ = jj + ii[i];
20730cd7f59aSBarry Smith     bd = 0;
2074dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20750cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2076dfb205c3SBarry Smith       JJ++;
20770cd7f59aSBarry Smith       bd++;
2078dfb205c3SBarry Smith     }
2079dfb205c3SBarry Smith     d = 0;
2080dfb205c3SBarry Smith     for (; j < nz; j++) {
2081dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2082dfb205c3SBarry Smith       d++;
2083dfb205c3SBarry Smith     }
2084dfb205c3SBarry Smith     d_nnz[i] = d;
20850cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20860cd7f59aSBarry Smith     nz       = nz - bd;
20870cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2088dfb205c3SBarry Smith   }
20899566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20909566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20919566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2092dfb205c3SBarry Smith 
2093dfb205c3SBarry Smith   values = (PetscScalar *)V;
209448a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2095dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2096dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2097dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2098dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2099bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2100dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
21019566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2102bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2103bb80cfbbSStefano Zampini       PetscInt j;
21040cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
21050cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
21069566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
21070cd7f59aSBarry Smith       }
21080cd7f59aSBarry Smith     }
2109dfb205c3SBarry Smith   }
2110dfb205c3SBarry Smith 
21119566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
21123bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
21133bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
21149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21163bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
21173bd0feecSPierre Jolivet 
21189566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
21193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2120dfb205c3SBarry Smith }
2121dfb205c3SBarry Smith 
21220bad9183SKris Buschelman /*MC
2123fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2124828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2125828413b8SBarry Smith    the matrix is stored.
2126828413b8SBarry Smith 
2127828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
212811a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
21290bad9183SKris Buschelman 
21302ef1f0ffSBarry Smith    Options Database Key:
213111a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
21320bad9183SKris Buschelman 
21332ef1f0ffSBarry Smith    Level: beginner
21342ef1f0ffSBarry Smith 
213511a5261eSBarry Smith    Note:
2136476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2137476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2138476417e5SBarry Smith 
21391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
21400bad9183SKris Buschelman M*/
21410bad9183SKris Buschelman 
2142d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2143d71ae5a4SJacob Faibussowitsch {
2144b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
214594ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2146b5df2d14SHong Zhang 
2147b5df2d14SHong Zhang   PetscFunctionBegin;
21484dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2149b0a32e0cSBarry Smith   B->data   = (void *)b;
2150aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2151b5df2d14SHong Zhang 
2152b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2153b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2154b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2155b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
215626fbe8dcSKarl Rupp 
21579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
21589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2159b5df2d14SHong Zhang 
2160b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2162b5df2d14SHong Zhang 
2163b5df2d14SHong Zhang   /* build cache for off array entries formed */
21649566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
216526fbe8dcSKarl Rupp 
2166b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21670298fd71SBarry Smith   b->colmap      = NULL;
21680298fd71SBarry Smith   b->garray      = NULL;
2169b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2170b5df2d14SHong Zhang 
2171b5df2d14SHong Zhang   /* stuff used in block assembly */
2172f4259b30SLisandro Dalcin   b->barray = NULL;
2173b5df2d14SHong Zhang 
2174b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2175f4259b30SLisandro Dalcin   b->lvec    = NULL;
2176f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2177f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2178f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2179f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2180f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2181f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2182f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2183b5df2d14SHong Zhang 
2184b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2185f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2186f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2187b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2188b5df2d14SHong Zhang 
2189b5df2d14SHong Zhang   /* hash table stuff */
2190f4259b30SLisandro Dalcin   b->ht           = NULL;
2191f4259b30SLisandro Dalcin   b->hd           = NULL;
2192b5df2d14SHong Zhang   b->ht_size      = 0;
2193b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2194b5df2d14SHong Zhang   b->ht_fact      = 0;
2195b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2196b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2197b5df2d14SHong Zhang 
21987dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21997a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
22007a868f3eSHong Zhang 
2201f4259b30SLisandro Dalcin   b->in_loc = NULL;
2202f4259b30SLisandro Dalcin   b->v_loc  = NULL;
220359ffdab8SBarry Smith   b->n_loc  = 0;
220494ae4db5SBarry Smith 
22059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
22069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
22079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
22089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
22096214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
22109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
22116214f412SHong Zhang #endif
2212d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
22139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2214d24d4204SJose E. Roman #endif
22159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
22169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2217aa5a9175SDahai Guo 
2218b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2219b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2220b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2221b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2222eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2223b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2224eb1ec7c1SStefano Zampini #else
2225b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2226eb1ec7c1SStefano Zampini #endif
222713647f61SHong Zhang 
22289566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2229d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
22309566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
223194ae4db5SBarry Smith   if (flg) {
223294ae4db5SBarry Smith     PetscReal fact = 1.39;
22339566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
22349566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
223594ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
22369566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
22379566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
223894ae4db5SBarry Smith   }
2239d0609cedSBarry Smith   PetscOptionsEnd();
22403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2241b5df2d14SHong Zhang }
2242b5df2d14SHong Zhang 
22432920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2244209238afSKris Buschelman /*MC
2245002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2246209238afSKris Buschelman 
224711a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
224811a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2249209238afSKris Buschelman 
225011a5261eSBarry Smith    Options Database Key:
2251c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2252209238afSKris Buschelman 
2253209238afSKris Buschelman   Level: beginner
2254209238afSKris Buschelman 
22551cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2256209238afSKris Buschelman M*/
2257209238afSKris Buschelman 
2258b5df2d14SHong Zhang /*@C
2259b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2260b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2261b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2262b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2263b5df2d14SHong Zhang 
2264c3339decSBarry Smith   Collective
2265b5df2d14SHong Zhang 
2266b5df2d14SHong Zhang   Input Parameters:
22671c4f3114SJed Brown + B     - the matrix
2268bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2269bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2270b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2271b5df2d14SHong Zhang            submatrix  (same for all local rows)
2272b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22736d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22742ef1f0ffSBarry Smith            (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
227595742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2276b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2277b5df2d14SHong Zhang            submatrix (same for all local rows).
2278b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2279c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22802ef1f0ffSBarry Smith            (possibly different for each block row) or `NULL`.
2281b5df2d14SHong Zhang 
2282b5df2d14SHong Zhang   Options Database Keys:
2283a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2284b5df2d14SHong Zhang                      block calculations (much slower)
2285a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2286b5df2d14SHong Zhang 
22872ef1f0ffSBarry Smith   Level: intermediate
22882ef1f0ffSBarry Smith 
2289b5df2d14SHong Zhang   Notes:
2290b5df2d14SHong Zhang 
229111a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2292b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2293b5df2d14SHong Zhang 
229449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
229549a6f317SBarry Smith 
2296b5df2d14SHong Zhang   Storage Information:
2297b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2298b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2299b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2300b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2301b5df2d14SHong Zhang 
2302b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
23032ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
23042ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2305b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
23062ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2307b5df2d14SHong Zhang 
230811a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2309aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
23102ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2311aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2312aa95bbe8SBarry Smith 
2313b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2314b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2315b5df2d14SHong Zhang 
2316b5df2d14SHong Zhang .vb
2317b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2318a4b1a0f6SJed Brown           --------------------------
2319c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2320c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2321c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2322a4b1a0f6SJed Brown           --------------------------
2323b5df2d14SHong Zhang .ve
2324b5df2d14SHong Zhang 
2325b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2326b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
23276d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
232811a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2329b5df2d14SHong Zhang 
23302ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23316d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
23322ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2333c2fc9fa9SBarry Smith 
2334b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
23352ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2336b5df2d14SHong Zhang 
23371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2338b5df2d14SHong Zhang @*/
2339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2340d71ae5a4SJacob Faibussowitsch {
2341b5df2d14SHong Zhang   PetscFunctionBegin;
23426ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
23436ba663aaSJed Brown   PetscValidType(B, 1);
23446ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2345cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
23463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2347b5df2d14SHong Zhang }
2348b5df2d14SHong Zhang 
23492920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2350a30f8f8cSSatish Balay /*@C
235111a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2352a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2353a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
235420f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2355a30f8f8cSSatish Balay 
2356d083f849SBarry Smith   Collective
2357a30f8f8cSSatish Balay 
2358a30f8f8cSSatish Balay   Input Parameters:
2359a30f8f8cSSatish Balay + comm  - MPI communicator
236011a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
236120f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
236220f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2363a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2364a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
236520f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2366a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2367a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
236820f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
236920f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2370a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2371a30f8f8cSSatish Balay            submatrix (same for all local rows)
2372a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23736d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23742ef1f0ffSBarry Smith            (possibly different for each block block row) or `NULL`.
237595742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
237695742e49SBarry Smith            set its value even if it is zero.
2377a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2378a30f8f8cSSatish Balay            submatrix (same for all local rows).
2379a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2380a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23812ef1f0ffSBarry Smith            each block row) or `NULL`.
2382a30f8f8cSSatish Balay 
2383a30f8f8cSSatish Balay   Output Parameter:
2384a30f8f8cSSatish Balay . A - the matrix
2385a30f8f8cSSatish Balay 
2386a30f8f8cSSatish Balay   Options Database Keys:
2387a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2388a30f8f8cSSatish Balay                      block calculations (much slower)
2389a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2390a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2391a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2392a30f8f8cSSatish Balay 
23932ef1f0ffSBarry Smith   Level: intermediate
23942ef1f0ffSBarry Smith 
23952ef1f0ffSBarry Smith   Notes:
239677433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2397f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
239811a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2399175b88e8SBarry Smith 
2400d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
24016d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2402d1be2dadSMatthew Knepley 
2403a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2404a30f8f8cSSatish Balay   (possibly both).
2405a30f8f8cSSatish Balay 
240611a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2407a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2408a30f8f8cSSatish Balay 
240949a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
241049a6f317SBarry Smith 
2411a30f8f8cSSatish Balay   Storage Information:
2412a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2413a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2414a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2415a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2416a30f8f8cSSatish Balay 
2417a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
24182ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
24192ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2420a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
24212ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2422a30f8f8cSSatish Balay 
2423a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2424a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2425a30f8f8cSSatish Balay 
2426a30f8f8cSSatish Balay .vb
2427a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2428a4b1a0f6SJed Brown           --------------------------
2429c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2430c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2431c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2432a4b1a0f6SJed Brown           --------------------------
2433a30f8f8cSSatish Balay .ve
2434a30f8f8cSSatish Balay 
2435a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2436a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
24376d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
24382ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2439a30f8f8cSSatish Balay 
24402ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
24416d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
24422ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2443a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
24442ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2445a30f8f8cSSatish Balay 
24461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`
2447a30f8f8cSSatish Balay @*/
2448d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2449d71ae5a4SJacob Faibussowitsch {
24501302d50aSBarry Smith   PetscMPIInt size;
2451a30f8f8cSSatish Balay 
2452a30f8f8cSSatish Balay   PetscFunctionBegin;
24539566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24549566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
24559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2456273d9f13SBarry Smith   if (size > 1) {
24579566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
24589566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2459273d9f13SBarry Smith   } else {
24609566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
24619566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2462273d9f13SBarry Smith   }
24633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2464a30f8f8cSSatish Balay }
2465a30f8f8cSSatish Balay 
2466d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2467d71ae5a4SJacob Faibussowitsch {
2468a30f8f8cSSatish Balay   Mat           mat;
2469a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2470d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2471387bc808SHong Zhang   PetscScalar  *array;
2472a30f8f8cSSatish Balay 
2473a30f8f8cSSatish Balay   PetscFunctionBegin;
2474f4259b30SLisandro Dalcin   *newmat = NULL;
247526fbe8dcSKarl Rupp 
24769566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24779566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24789566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2481e1b6402fSHong Zhang 
2482420957c1SBarry Smith   if (matin->hash_active) {
2483420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2484420957c1SBarry Smith   } else {
2485d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
2486273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
248782327fa8SHong Zhang     mat->assembled    = PETSC_TRUE;
24887fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
24897fff6886SHong Zhang 
2490b5df2d14SHong Zhang     a      = (Mat_MPISBAIJ *)mat->data;
2491a30f8f8cSSatish Balay     a->bs2 = oldmat->bs2;
2492a30f8f8cSSatish Balay     a->mbs = oldmat->mbs;
2493a30f8f8cSSatish Balay     a->nbs = oldmat->nbs;
2494a30f8f8cSSatish Balay     a->Mbs = oldmat->Mbs;
2495a30f8f8cSSatish Balay     a->Nbs = oldmat->Nbs;
2496a30f8f8cSSatish Balay 
2497a30f8f8cSSatish Balay     a->size         = oldmat->size;
2498a30f8f8cSSatish Balay     a->rank         = oldmat->rank;
2499a30f8f8cSSatish Balay     a->donotstash   = oldmat->donotstash;
2500a30f8f8cSSatish Balay     a->roworiented  = oldmat->roworiented;
2501f4259b30SLisandro Dalcin     a->rowindices   = NULL;
2502f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
2503a30f8f8cSSatish Balay     a->getrowactive = PETSC_FALSE;
2504f4259b30SLisandro Dalcin     a->barray       = NULL;
2505899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
2506899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
2507899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
2508899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
2509a30f8f8cSSatish Balay 
2510a30f8f8cSSatish Balay     /* hash table stuff */
2511f4259b30SLisandro Dalcin     a->ht           = NULL;
2512f4259b30SLisandro Dalcin     a->hd           = NULL;
2513a30f8f8cSSatish Balay     a->ht_size      = 0;
2514a30f8f8cSSatish Balay     a->ht_flag      = oldmat->ht_flag;
2515a30f8f8cSSatish Balay     a->ht_fact      = oldmat->ht_fact;
2516a30f8f8cSSatish Balay     a->ht_total_ct  = 0;
2517a30f8f8cSSatish Balay     a->ht_insert_ct = 0;
2518a30f8f8cSSatish Balay 
25199566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2520a30f8f8cSSatish Balay     if (oldmat->colmap) {
2521a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2522eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2523a30f8f8cSSatish Balay #else
25249566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
25259566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2526a30f8f8cSSatish Balay #endif
2527f4259b30SLisandro Dalcin     } else a->colmap = NULL;
2528387bc808SHong Zhang 
2529f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
25309566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
25319566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2532f4259b30SLisandro Dalcin     } else a->garray = NULL;
2533a30f8f8cSSatish Balay 
25349566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
25359566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
25369566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
253782327fa8SHong Zhang 
25389566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
25399566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2540387bc808SHong Zhang 
25419566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(a->slvec1, &nt));
25429566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec1, &array));
25439566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
25449566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
25459566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec1, &array));
25469566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec0, &array));
25479566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
25489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec0, &array));
2549387bc808SHong Zhang 
2550387bc808SHong Zhang     /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25519566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2552387bc808SHong Zhang     a->sMvctx = oldmat->sMvctx;
255382327fa8SHong Zhang 
25549566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
25559566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
2556420957c1SBarry Smith   }
25579566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2558a30f8f8cSSatish Balay   *newmat = mat;
25593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2560a30f8f8cSSatish Balay }
2561a30f8f8cSSatish Balay 
2562618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2563618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2564618cc2edSLisandro Dalcin 
25656cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2566d71ae5a4SJacob Faibussowitsch {
25677f489da9SVaclav Hapla   PetscBool isbinary;
256895936485SShri Abhyankar 
256995936485SShri Abhyankar   PetscFunctionBegin;
25709566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25715f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25729566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
257495936485SShri Abhyankar }
257595936485SShri Abhyankar 
2576*789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2577d71ae5a4SJacob Faibussowitsch {
257824d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2579f4f49eeaSPierre Jolivet   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)a->B->data;
2580ca54ac64SHong Zhang   PetscReal     atmp;
258187828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25821302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25831302d50aSBarry Smith   PetscMPIInt   rank, size;
25841302d50aSBarry Smith   PetscInt     *rowners_bs, dest, count, source;
258587828ca2SBarry Smith   PetscScalar  *va;
25868a1c53f2SBarry Smith   MatScalar    *ba;
2587f4c0e9e4SHong Zhang   MPI_Status    stat;
258824d5174aSHong Zhang 
258924d5174aSHong Zhang   PetscFunctionBegin;
25905f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25919566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2593f4c0e9e4SHong Zhang 
25949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2596f4c0e9e4SHong Zhang 
2597d0f46423SBarry Smith   bs  = A->rmap->bs;
2598f4c0e9e4SHong Zhang   mbs = a->mbs;
2599f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2600f4c0e9e4SHong Zhang   ba  = b->a;
2601f4c0e9e4SHong Zhang   bi  = b->i;
2602f4c0e9e4SHong Zhang   bj  = b->j;
2603f4c0e9e4SHong Zhang 
2604f4c0e9e4SHong Zhang   /* find ownerships */
2605d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2606f4c0e9e4SHong Zhang 
2607f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
26089566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2609f4c0e9e4SHong Zhang 
2610f4c0e9e4SHong Zhang   /* row_max for B */
2611b8475685SHong Zhang   if (rank != size - 1) {
2612f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
26139371c9d4SSatish Balay       ncols = bi[1] - bi[0];
26149371c9d4SSatish Balay       bi++;
2615f4c0e9e4SHong Zhang       brow = bs * i;
2616f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2617f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2618f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2619ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
262004d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2621f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
26229371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
26239371c9d4SSatish Balay             ba++;
2624ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2625ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2626f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2627f4c0e9e4SHong Zhang           }
2628f4c0e9e4SHong Zhang         }
2629f4c0e9e4SHong Zhang         bj++;
2630f4c0e9e4SHong Zhang       }
2631f4c0e9e4SHong Zhang     }
2632f4c0e9e4SHong Zhang 
2633f4c0e9e4SHong Zhang     /* send values to its owners */
2634f4c0e9e4SHong Zhang     for (dest = rank + 1; dest < size; dest++) {
2635f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2636ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
26379566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2638ca54ac64SHong Zhang     }
2639f4c0e9e4SHong Zhang   }
2640f4c0e9e4SHong Zhang 
2641f4c0e9e4SHong Zhang   /* receive values */
2642ca54ac64SHong Zhang   if (rank) {
2643f4c0e9e4SHong Zhang     rvalues = work;
2644ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2645f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
26469566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2647f4c0e9e4SHong Zhang       /* process values */
2648f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2649ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2650f4c0e9e4SHong Zhang       }
2651f4c0e9e4SHong Zhang     }
2652ca54ac64SHong Zhang   }
2653f4c0e9e4SHong Zhang 
26549566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
26559566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
26563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
265724d5174aSHong Zhang }
26582798e883SHong Zhang 
2659*789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2660d71ae5a4SJacob Faibussowitsch {
26612798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2662d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
26633649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2664ffe4fb16SHong Zhang   Vec                bb1;
26653649974fSBarry Smith   const PetscScalar *b;
2666ffe4fb16SHong Zhang 
2667ffe4fb16SHong Zhang   PetscFunctionBegin;
26685f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26695f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2670ffe4fb16SHong Zhang 
2671a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26729566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26733ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2674a2b30743SBarry Smith   }
2675a2b30743SBarry Smith 
2676ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2677ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26789566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2679ffe4fb16SHong Zhang       its--;
2680ffe4fb16SHong Zhang     }
2681ffe4fb16SHong Zhang 
26829566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2683ffe4fb16SHong Zhang     while (its--) {
2684ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26859566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2686ffe4fb16SHong Zhang 
2687ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26889566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26899566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26909566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26919566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2692ffe4fb16SHong Zhang 
26939566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2694ffe4fb16SHong Zhang 
2695ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26969566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26979566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26989566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26999566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2700ffe4fb16SHong Zhang 
2701ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2702629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2703629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2704ffe4fb16SHong Zhang 
27059566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27069566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
27079566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27089566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2709ffe4fb16SHong Zhang 
2710ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
27119566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2712ffe4fb16SHong Zhang 
2713ffe4fb16SHong Zhang       /* local diagonal sweep */
27149566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2715ffe4fb16SHong Zhang     }
27169566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2717fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
27189566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2719fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
27209566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2721fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2722fa22f6d0SBarry Smith     Vec                xx1;
2723ace3abfcSBarry Smith     PetscBool          hasop;
272420f1ed55SBarry Smith     const PetscScalar *diag;
2725887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
272620f1ed55SBarry Smith     PetscInt           i, n;
2727fa22f6d0SBarry Smith 
2728fa22f6d0SBarry Smith     if (!mat->xx1) {
27299566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
27309566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2731fa22f6d0SBarry Smith     }
2732fa22f6d0SBarry Smith     xx1 = mat->xx1;
2733fa22f6d0SBarry Smith     bb1 = mat->bb1;
2734fa22f6d0SBarry Smith 
27359566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2736fa22f6d0SBarry Smith 
2737fa22f6d0SBarry Smith     if (!mat->diag) {
2738effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27399566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
27409566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2741fa22f6d0SBarry Smith     }
27429566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2743fa22f6d0SBarry Smith 
2744fa22f6d0SBarry Smith     if (hasop) {
27459566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
27469566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
274720f1ed55SBarry Smith     } else {
274820f1ed55SBarry Smith       /*
274920f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
27509566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27519566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
275220f1ed55SBarry Smith       */
27539566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
27549566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
27559566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
27569566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
27579566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2758887ee2caSBarry Smith       if (omega == 1.0) {
275926fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
27609566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2761887ee2caSBarry Smith       } else {
276226fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
27639566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2764887ee2caSBarry Smith       }
27659566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
27669566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27679566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27689566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
276920f1ed55SBarry Smith     }
2770fa22f6d0SBarry Smith 
2771fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2772629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2773629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27749566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27759566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27769566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27779566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27789566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27799566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27809566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27819566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27829566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2783fa22f6d0SBarry Smith 
2784fa22f6d0SBarry Smith     /* local sweep */
27859566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27869566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2787f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2789ffe4fb16SHong Zhang }
2790ffe4fb16SHong Zhang 
2791dfb205c3SBarry Smith /*@
2792d8a51d2aSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows.
2793dfb205c3SBarry Smith 
2794d083f849SBarry Smith   Collective
2795dfb205c3SBarry Smith 
2796dfb205c3SBarry Smith   Input Parameters:
2797dfb205c3SBarry Smith + comm - MPI communicator
2798dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
279911a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2800dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
2801d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
28022ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
28032ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
28042ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2805483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2806dfb205c3SBarry Smith . j    - column indices
2807dfb205c3SBarry Smith - a    - matrix values
2808dfb205c3SBarry Smith 
2809dfb205c3SBarry Smith   Output Parameter:
2810dfb205c3SBarry Smith . mat - the matrix
2811dfb205c3SBarry Smith 
2812dfb205c3SBarry Smith   Level: intermediate
2813dfb205c3SBarry Smith 
2814dfb205c3SBarry Smith   Notes:
28152ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
28162ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
28172ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2818dfb205c3SBarry Smith 
28192ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2820dfb205c3SBarry Smith 
28211cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2822d8a51d2aSBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()`
2823dfb205c3SBarry Smith @*/
2824d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2825d71ae5a4SJacob Faibussowitsch {
2826dfb205c3SBarry Smith   PetscFunctionBegin;
28275f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
28285f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
28299566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
28309566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
28319566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
28329566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
28333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2834dfb205c3SBarry Smith }
2835dfb205c3SBarry Smith 
2836dfb205c3SBarry Smith /*@C
283711a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2838dfb205c3SBarry Smith 
2839d083f849SBarry Smith   Collective
2840dfb205c3SBarry Smith 
2841dfb205c3SBarry Smith   Input Parameters:
28421c4f3114SJed Brown + B  - the matrix
2843dfb205c3SBarry Smith . bs - the block size
2844d8a51d2aSBarry Smith . i  - the indices into `j` for the start of each local row (indices start with zero)
2845d8a51d2aSBarry Smith . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
2846d8a51d2aSBarry Smith - v  - optional values in the matrix, pass `NULL` if not provided
2847dfb205c3SBarry Smith 
2848664954b6SBarry Smith   Level: advanced
2849664954b6SBarry Smith 
2850664954b6SBarry Smith   Notes:
2851d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2852d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2853d8a51d2aSBarry Smith   called this routine.
2854d8a51d2aSBarry Smith 
28550cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28560cd7f59aSBarry Smith   and usually the numerical values as well
28570cd7f59aSBarry Smith 
2858d8a51d2aSBarry Smith   Any entries passed in that are below the diagonal are ignored
2859dfb205c3SBarry Smith 
2860d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`,
2861d8a51d2aSBarry Smith           `MatCreateMPISBAIJWithArrays()`
2862dfb205c3SBarry Smith @*/
2863d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2864d71ae5a4SJacob Faibussowitsch {
2865dfb205c3SBarry Smith   PetscFunctionBegin;
2866cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2868dfb205c3SBarry Smith }
2869dfb205c3SBarry Smith 
2870d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2871d71ae5a4SJacob Faibussowitsch {
287210c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
287310c56fdeSHong Zhang   PetscInt    *indx;
287410c56fdeSHong Zhang   PetscScalar *values;
2875dfb205c3SBarry Smith 
28764dcd73b1SHong Zhang   PetscFunctionBegin;
28779566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
287810c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
287910c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2880de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
288110c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2882de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28834dcd73b1SHong Zhang 
28849566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28859371c9d4SSatish Balay     mbs = m / bs;
28869371c9d4SSatish Balay     Nbs = N / cbs;
288748a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2888da91a574SPierre Jolivet     nbs = n / cbs;
28894dcd73b1SHong Zhang 
28909566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2891d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2892de25e9cbSPierre Jolivet 
28939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2895de25e9cbSPierre Jolivet     if (rank == size - 1) {
2896de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28975f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2898de25e9cbSPierre Jolivet     }
2899de25e9cbSPierre Jolivet 
2900d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
29019566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
290210c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
29039566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
29044dcd73b1SHong Zhang       nnz = nnz / bs;
29054dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
29069566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
29079566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
29084dcd73b1SHong Zhang     }
29099566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
29109566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
29114dcd73b1SHong Zhang 
29129566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
29139566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
29149566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
29159566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
29169566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
29179566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2918d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
29194dcd73b1SHong Zhang   }
29204dcd73b1SHong Zhang 
292110c56fdeSHong Zhang   /* numeric phase */
29229566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
29239566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
29244dcd73b1SHong Zhang 
29259566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
29264dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
29279566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29284dcd73b1SHong Zhang     Ii = i + rstart;
29299566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
29309566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29314dcd73b1SHong Zhang   }
29329566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
29339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
29349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
29353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29364dcd73b1SHong Zhang }
2937