1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3*7c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5*7c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define CHUNKSIZE 10 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 57a30f8f8cSSatish Balay { \ 58a30f8f8cSSatish Balay \ 59a30f8f8cSSatish Balay brow = row/bs; \ 60a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 61a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 62a30f8f8cSSatish Balay bcol = col/bs; \ 63a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 64a30f8f8cSSatish Balay low = 0; high = nrow; \ 65a30f8f8cSSatish Balay while (high-low > 3) { \ 66a30f8f8cSSatish Balay t = (low+high)/2; \ 67a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 68a30f8f8cSSatish Balay else low = t; \ 69a30f8f8cSSatish Balay } \ 70a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 71a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 72a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 73a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 74a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 75a30f8f8cSSatish Balay else *bap = value; \ 76a30f8f8cSSatish Balay goto a_noinsert; \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 80085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 81421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 82a30f8f8cSSatish Balay N = nrow++ - 1; \ 83a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 84a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 85a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 86a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 87a30f8f8cSSatish Balay } \ 88a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 89a30f8f8cSSatish Balay rp[_i] = bcol; \ 90a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 91a30f8f8cSSatish Balay a_noinsert:; \ 92a30f8f8cSSatish Balay ailen[brow] = nrow; \ 93a30f8f8cSSatish Balay } 94e5e170daSBarry Smith 95a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 96a30f8f8cSSatish Balay { \ 97a30f8f8cSSatish Balay brow = row/bs; \ 98a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 99a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 100a30f8f8cSSatish Balay bcol = col/bs; \ 101a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 102a30f8f8cSSatish Balay low = 0; high = nrow; \ 103a30f8f8cSSatish Balay while (high-low > 3) { \ 104a30f8f8cSSatish Balay t = (low+high)/2; \ 105a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 106a30f8f8cSSatish Balay else low = t; \ 107a30f8f8cSSatish Balay } \ 108a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 109a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 110a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 111a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 112a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 113a30f8f8cSSatish Balay else *bap = value; \ 114a30f8f8cSSatish Balay goto b_noinsert; \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 118085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 119421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 120a30f8f8cSSatish Balay N = nrow++ - 1; \ 121a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 122a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 123a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay } \ 126a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 127a30f8f8cSSatish Balay rp[_i] = bcol; \ 128a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 129a30f8f8cSSatish Balay b_noinsert:; \ 130a30f8f8cSSatish Balay bilen[brow] = nrow; \ 131a30f8f8cSSatish Balay } 132a30f8f8cSSatish Balay 133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 134a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 135a30f8f8cSSatish Balay */ 1364a2ae208SSatish Balay #undef __FUNCT__ 137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 139a30f8f8cSSatish Balay { 140a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 141a30f8f8cSSatish Balay MatScalar value; 142b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 143dfbe8321SBarry Smith PetscErrorCode ierr; 1441302d50aSBarry Smith PetscInt i,j,row,col; 145d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 146d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 147d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 148a30f8f8cSSatish Balay 149a30f8f8cSSatish Balay /* Some Variables required in the macro */ 150a30f8f8cSSatish Balay Mat A = baij->A; 151a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1521302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 153a30f8f8cSSatish Balay MatScalar *aa=a->a; 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay Mat B = baij->B; 156a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1571302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 158a30f8f8cSSatish Balay MatScalar *ba=b->a; 159a30f8f8cSSatish Balay 1601302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1611302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 162a30f8f8cSSatish Balay MatScalar *ap,*bap; 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay /* for stash */ 165910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 166910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 167a30f8f8cSSatish Balay 168a30f8f8cSSatish Balay PetscFunctionBegin; 169a30f8f8cSSatish Balay 170a30f8f8cSSatish Balay if (!baij->donotstash){ 17159ffdab8SBarry Smith if (n > baij->n_loc) { 17259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith baij->n_loc = n; 17759ffdab8SBarry Smith } 17859ffdab8SBarry Smith in_loc = baij->in_loc; 17959ffdab8SBarry Smith v_loc = baij->v_loc; 180a30f8f8cSSatish Balay } 181a30f8f8cSSatish Balay 182a30f8f8cSSatish Balay for (i=0; i<m; i++) { 183a30f8f8cSSatish Balay if (im[i] < 0) continue; 1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 185d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 186a30f8f8cSSatish Balay #endif 187a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 188a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 189a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19001b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19101b2bd88SHong Zhang if (a->ignore_ltriangular){ 19201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19301b2bd88SHong Zhang } else { 1944e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19501b2bd88SHong Zhang } 19601b2bd88SHong Zhang } 197a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 198a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 199a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 200a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 201a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 202a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 203a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 204a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 206d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 207a30f8f8cSSatish Balay #endif 208a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 209a30f8f8cSSatish Balay if (mat->was_assembled) { 210a30f8f8cSSatish Balay if (!baij->colmap) { 211653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 214a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21571730473SSatish Balay col = col - 1; 216a30f8f8cSSatish Balay #else 21771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 218a30f8f8cSSatish Balay #endif 219a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 220a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 221a30f8f8cSSatish Balay col = in[j]; 222a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 223a30f8f8cSSatish Balay B = baij->B; 224a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 225a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 226a30f8f8cSSatish Balay ba=b->a; 22771730473SSatish Balay } else col += in[j]%bs; 228a30f8f8cSSatish Balay } else col = in[j]; 229a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 231a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } else { /* off processor entry */ 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 2610880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 28177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 2860880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2870880e062SHong Zhang if ((roworiented) && (n == 1)) { 288f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2890880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2910880e062SHong Zhang } else { /* Here a copy is required */ 2920880e062SHong Zhang if (roworiented) { 2930880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2940880e062SHong Zhang } else { 2950880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2960880e062SHong Zhang } 2970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2990880e062SHong Zhang *barray++ = *value++; 3000880e062SHong Zhang } 3010880e062SHong Zhang } 3020880e062SHong Zhang barray -=bs2; 3030880e062SHong Zhang } 3040880e062SHong Zhang 3050880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3060880e062SHong Zhang col = in[j] - cstart; 3070880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3080880e062SHong Zhang } 3090880e062SHong Zhang else if (in[j] < 0) continue; 3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 31177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3120880e062SHong Zhang #endif 3130880e062SHong Zhang else { 3140880e062SHong Zhang if (mat->was_assembled) { 3150880e062SHong Zhang if (!baij->colmap) { 316653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3170880e062SHong Zhang } 3180880e062SHong Zhang 3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3211302d50aSBarry Smith { PetscInt data; 3220880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3230880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3240880e062SHong Zhang } 3250880e062SHong Zhang #else 3260880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3300880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3310880e062SHong Zhang col = (col - 1)/bs; 3320880e062SHong Zhang #else 3330880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3340880e062SHong Zhang #endif 3350880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3360880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3370880e062SHong Zhang col = in[j]; 3380880e062SHong Zhang } 3390880e062SHong Zhang } 3400880e062SHong Zhang else col = in[j]; 341e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang } else { 3450880e062SHong Zhang if (!baij->donotstash) { 3460880e062SHong Zhang if (roworiented) { 3470880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3480880e062SHong Zhang } else { 3490880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang PetscFunctionReturn(0); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 360a30f8f8cSSatish Balay { 361f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3626849ba73SBarry Smith PetscErrorCode ierr; 363d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 364d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 365a30f8f8cSSatish Balay 366a30f8f8cSSatish Balay PetscFunctionBegin; 367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 36897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 369d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 370a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 371a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 372a30f8f8cSSatish Balay for (j=0; j<n; j++) { 37397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 374d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 375a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 376a30f8f8cSSatish Balay col = idxn[j] - bscstart; 377c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 378a30f8f8cSSatish Balay } else { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 384a30f8f8cSSatish Balay data --; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 389a30f8f8cSSatish Balay else { 390a30f8f8cSSatish Balay col = data + idxn[j]%bs; 391e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } else { 39629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay PetscFunctionReturn(0); 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay 4024a2ae208SSatish Balay #undef __FUNCT__ 4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 405a30f8f8cSSatish Balay { 406a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 407dfbe8321SBarry Smith PetscErrorCode ierr; 408a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 409a30f8f8cSSatish Balay 410a30f8f8cSSatish Balay PetscFunctionBegin; 411a30f8f8cSSatish Balay if (baij->size == 1) { 412a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 413a30f8f8cSSatish Balay } else { 414a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 415f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 418a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 419a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4207adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 422a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4230b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4240b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4250b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4260b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 427899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 428d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4290b8dc8d2SHong Zhang MatScalar *v; 4300b8dc8d2SHong Zhang 431d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 432d0f46423SBarry Smith rsum2 = rsum + mat->cmap->N; 433d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 467d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 4720b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 473a30f8f8cSSatish Balay } else { 47429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 475a30f8f8cSSatish Balay } 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay PetscFunctionReturn(0); 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay 4804a2ae208SSatish Balay #undef __FUNCT__ 4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 483a30f8f8cSSatish Balay { 484a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 485dfbe8321SBarry Smith PetscErrorCode ierr; 4861302d50aSBarry Smith PetscInt nstash,reallocs; 487a30f8f8cSSatish Balay InsertMode addv; 488a30f8f8cSSatish Balay 489a30f8f8cSSatish Balay PetscFunctionBegin; 490a30f8f8cSSatish Balay if (baij->donotstash) { 491a30f8f8cSSatish Balay PetscFunctionReturn(0); 492a30f8f8cSSatish Balay } 493a30f8f8cSSatish Balay 494a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4957adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 496a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 49729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 500a30f8f8cSSatish Balay 501d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5021e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 503a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay PetscFunctionReturn(0); 508a30f8f8cSSatish Balay } 509a30f8f8cSSatish Balay 5104a2ae208SSatish Balay #undef __FUNCT__ 5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 513a30f8f8cSSatish Balay { 514a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 515a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5166849ba73SBarry Smith PetscErrorCode ierr; 51713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 518e44c0bd4SBarry Smith PetscInt *row,*col; 519e44c0bd4SBarry Smith PetscTruth other_disassembled; 52013f74950SBarry Smith PetscMPIInt n; 521a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 522a30f8f8cSSatish Balay MatScalar *val; 523a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 524a30f8f8cSSatish Balay 52591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 526a30f8f8cSSatish Balay PetscFunctionBegin; 527a30f8f8cSSatish Balay 528a30f8f8cSSatish Balay if (!baij->donotstash) { 529a30f8f8cSSatish Balay while (1) { 530a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 531a30f8f8cSSatish Balay if (!flg) break; 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay for (i=0; i<n;) { 534a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 535a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 536a30f8f8cSSatish Balay if (j < n) ncols = j-i; 537a30f8f8cSSatish Balay else ncols = n-i; 538a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 539dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 540a30f8f8cSSatish Balay i = j; 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 544a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 545a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 546a30f8f8cSSatish Balay restore the original flags */ 547a30f8f8cSSatish Balay r1 = baij->roworiented; 548a30f8f8cSSatish Balay r2 = a->roworiented; 54991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 550a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 551a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 553a30f8f8cSSatish Balay while (1) { 554a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 555a30f8f8cSSatish Balay if (!flg) break; 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay for (i=0; i<n;) { 558a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 559a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 560a30f8f8cSSatish Balay if (j < n) ncols = j-i; 561a30f8f8cSSatish Balay else ncols = n-i; 562dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 563a30f8f8cSSatish Balay i = j; 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 573a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay 575a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 576a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 577a30f8f8cSSatish Balay /* 578a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 579a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 580a30f8f8cSSatish Balay */ 581a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5827adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 583a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 584c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay 588a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 590a30f8f8cSSatish Balay } 59191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 595a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 596a30f8f8cSSatish Balay baij->rowvalues = 0; 5975222a1afSHong Zhang 598a30f8f8cSSatish Balay PetscFunctionReturn(0); 599a30f8f8cSSatish Balay } 600a30f8f8cSSatish Balay 601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6024a2ae208SSatish Balay #undef __FUNCT__ 6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 605a30f8f8cSSatish Balay { 606a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 607dfbe8321SBarry Smith PetscErrorCode ierr; 608d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6091302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61032077d6dSBarry Smith PetscTruth iascii,isdraw; 611b0a32e0cSBarry Smith PetscViewer sviewer; 612f3ef73ceSBarry Smith PetscViewerFormat format; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay PetscFunctionBegin; 61532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 616fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 61732077d6dSBarry Smith if (iascii) { 618b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 619456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 620a30f8f8cSSatish Balay MatInfo info; 6217adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 622a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 624d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 625d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 62977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 630b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 633a30f8f8cSSatish Balay PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 638c1490034SHong Zhang PetscFunctionReturn(0); 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay if (isdraw) { 643b0a32e0cSBarry Smith PetscDraw draw; 644a30f8f8cSSatish Balay PetscTruth isnull; 645b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 646b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay if (size == 1) { 6507adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 651a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 652a30f8f8cSSatish Balay } else { 653a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 654a30f8f8cSSatish Balay Mat A; 65565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 657d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 658a30f8f8cSSatish Balay MatScalar *a; 659a30f8f8cSSatish Balay 660f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6617adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 662a30f8f8cSSatish Balay if (!rank) { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } else { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 668d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 66952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay /* copy over the A part */ 67265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6741302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 677e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 678a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 679a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 680e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 681a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 682dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 683a30f8f8cSSatish Balay col++; a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 693a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 698a30f8f8cSSatish Balay col++; a += bs; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay /* 706a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 707b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 708a30f8f8cSSatish Balay */ 709b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71065d70643SHong Zhang if (!rank) { 7117adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 713a30f8f8cSSatish Balay } 714b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay PetscFunctionReturn(0); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay 7204a2ae208SSatish Balay #undef __FUNCT__ 7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 723a30f8f8cSSatish Balay { 724dfbe8321SBarry Smith PetscErrorCode ierr; 72532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay PetscFunctionBegin; 72832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 729fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 730b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 731fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 733a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 7351302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay PetscFunctionReturn(0); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay 7404a2ae208SSatish Balay #undef __FUNCT__ 7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 743a30f8f8cSSatish Balay { 744a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 745dfbe8321SBarry Smith PetscErrorCode ierr; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay PetscFunctionBegin; 748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 749d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 750a30f8f8cSSatish Balay #endif 751a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 752a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7569c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 757a30f8f8cSSatish Balay #else 75805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #endif 76005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 761a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 762a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76340781036SHong Zhang if (baij->slvec0) { 76440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76640781036SHong Zhang } 76740781036SHong Zhang if (baij->slvec1) { 76840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 76940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77140781036SHong Zhang } 77240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 77305b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 776a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 77705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 778a30f8f8cSSatish Balay #endif 77959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 781899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 782a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 783901853e0SKris Buschelman 784dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 785901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 786901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 787901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 788901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 789a30f8f8cSSatish Balay PetscFunctionReturn(0); 790a30f8f8cSSatish Balay } 791a30f8f8cSSatish Balay 7924a2ae208SSatish Balay #undef __FUNCT__ 793a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 794dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 795a9d4b620SHong Zhang { 796a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 797dfbe8321SBarry Smith PetscErrorCode ierr; 798d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 799a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 800a9d4b620SHong Zhang 801a9d4b620SHong Zhang PetscFunctionBegin; 802a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 803d0f46423SBarry Smith if (nt != A->cmap->n) { 804a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 805a9d4b620SHong Zhang } 806a9d4b620SHong Zhang 807a9d4b620SHong Zhang /* diagonal part */ 808a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8092dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 810a9d4b620SHong Zhang 811a9d4b620SHong Zhang /* subdiagonal part */ 812a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 813fc165ae2SBarry Smith 814a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8151ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8161ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 817a9d4b620SHong Zhang 818fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 819fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8201ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 821fc165ae2SBarry Smith 822fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 823ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 824a9d4b620SHong Zhang /* supperdiagonal part */ 825a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 826a9d4b620SHong Zhang PetscFunctionReturn(0); 827a9d4b620SHong Zhang } 828a9d4b620SHong Zhang 829a9d4b620SHong Zhang #undef __FUNCT__ 83040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 831dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 832a30f8f8cSSatish Balay { 833a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 834dfbe8321SBarry Smith PetscErrorCode ierr; 8351302d50aSBarry Smith PetscInt nt; 836a30f8f8cSSatish Balay 837a30f8f8cSSatish Balay PetscFunctionBegin; 838a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 839d0f46423SBarry Smith if (nt != A->cmap->n) { 84029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 843d0f46423SBarry Smith if (nt != A->rmap->N) { 84429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 845a30f8f8cSSatish Balay } 84665d70643SHong Zhang 847ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 848b941877fSHong Zhang /* do diagonal part */ 849b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 850b941877fSHong Zhang /* do supperdiagonal part */ 851ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 852b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 853b941877fSHong Zhang /* do subdiagonal part */ 854b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 855ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 856ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 85765d70643SHong Zhang 858a30f8f8cSSatish Balay PetscFunctionReturn(0); 859a30f8f8cSSatish Balay } 860a30f8f8cSSatish Balay 8614a2ae208SSatish Balay #undef __FUNCT__ 8624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 863dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 864a30f8f8cSSatish Balay { 865de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 866dfbe8321SBarry Smith PetscErrorCode ierr; 867d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 868a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang PetscFunctionBegin; 871a9d4b620SHong Zhang /* 8727adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 8737adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 874a9d4b620SHong Zhang */ 875a9d4b620SHong Zhang /* diagonal part */ 876a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 8772dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 878a9d4b620SHong Zhang 879a9d4b620SHong Zhang /* subdiagonal part */ 880a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 881a9d4b620SHong Zhang 882a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8831ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8841ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 885a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8861ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 887a9d4b620SHong Zhang 888ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8891ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 890ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 891a9d4b620SHong Zhang 892a9d4b620SHong Zhang /* supperdiagonal part */ 893a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 894a9d4b620SHong Zhang 895a9d4b620SHong Zhang PetscFunctionReturn(0); 896a9d4b620SHong Zhang } 897a9d4b620SHong Zhang 898a9d4b620SHong Zhang #undef __FUNCT__ 899a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 900dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 901a9d4b620SHong Zhang { 902a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 903dfbe8321SBarry Smith PetscErrorCode ierr; 904a30f8f8cSSatish Balay 905a30f8f8cSSatish Balay PetscFunctionBegin; 906ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 907b941877fSHong Zhang /* do diagonal part */ 908b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 909b941877fSHong Zhang /* do supperdiagonal part */ 910ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 911de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 912de8b6608SHong Zhang 913b941877fSHong Zhang /* do subdiagonal part */ 914a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 915ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 916ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 917aa482183SHong Zhang 918a30f8f8cSSatish Balay PetscFunctionReturn(0); 919a30f8f8cSSatish Balay } 920a30f8f8cSSatish Balay 921a30f8f8cSSatish Balay /* 922a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 923a30f8f8cSSatish Balay diagonal block 924a30f8f8cSSatish Balay */ 9254a2ae208SSatish Balay #undef __FUNCT__ 9264a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 927dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 928a30f8f8cSSatish Balay { 929a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 930dfbe8321SBarry Smith PetscErrorCode ierr; 931a30f8f8cSSatish Balay 932a30f8f8cSSatish Balay PetscFunctionBegin; 933d0f46423SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 934a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 935a30f8f8cSSatish Balay PetscFunctionReturn(0); 936a30f8f8cSSatish Balay } 937a30f8f8cSSatish Balay 9384a2ae208SSatish Balay #undef __FUNCT__ 9394a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 940f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 941a30f8f8cSSatish Balay { 942a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 943dfbe8321SBarry Smith PetscErrorCode ierr; 944a30f8f8cSSatish Balay 945a30f8f8cSSatish Balay PetscFunctionBegin; 946f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 947f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 948a30f8f8cSSatish Balay PetscFunctionReturn(0); 949a30f8f8cSSatish Balay } 950a30f8f8cSSatish Balay 9514a2ae208SSatish Balay #undef __FUNCT__ 9524a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9531302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 954a30f8f8cSSatish Balay { 955d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 956d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 957d0d4cfc2SHong Zhang PetscErrorCode ierr; 958d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 959d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 960899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 961d0d4cfc2SHong Zhang 962a30f8f8cSSatish Balay PetscFunctionBegin; 963d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 964d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 965d0d4cfc2SHong Zhang 966d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 967d0d4cfc2SHong Zhang /* 968d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 969d0d4cfc2SHong Zhang */ 970d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 971d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 972d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 973d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 974d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 975d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 976d0d4cfc2SHong Zhang } 977d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 978d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 979d0d4cfc2SHong Zhang } 980d0d4cfc2SHong Zhang 981d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 982d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 983d0d4cfc2SHong Zhang 984d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 985d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 986d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 987d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 988d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 989d0d4cfc2SHong Zhang nztot = nzA + nzB; 990d0d4cfc2SHong Zhang 991d0d4cfc2SHong Zhang cmap = mat->garray; 992d0d4cfc2SHong Zhang if (v || idx) { 993d0d4cfc2SHong Zhang if (nztot) { 994d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 995d0d4cfc2SHong Zhang PetscInt imark = -1; 996d0d4cfc2SHong Zhang if (v) { 997d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 998d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 999d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1000d0d4cfc2SHong Zhang else break; 1001d0d4cfc2SHong Zhang } 1002d0d4cfc2SHong Zhang imark = i; 1003d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1004d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1005d0d4cfc2SHong Zhang } 1006d0d4cfc2SHong Zhang if (idx) { 1007d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1008d0d4cfc2SHong Zhang if (imark > -1) { 1009d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1010d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1011d0d4cfc2SHong Zhang } 1012d0d4cfc2SHong Zhang } else { 1013d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1014d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1015d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1016d0d4cfc2SHong Zhang else break; 1017d0d4cfc2SHong Zhang } 1018d0d4cfc2SHong Zhang imark = i; 1019d0d4cfc2SHong Zhang } 1020d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1021d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1022d0d4cfc2SHong Zhang } 1023d0d4cfc2SHong Zhang } else { 1024d0d4cfc2SHong Zhang if (idx) *idx = 0; 1025d0d4cfc2SHong Zhang if (v) *v = 0; 1026d0d4cfc2SHong Zhang } 1027d0d4cfc2SHong Zhang } 1028d0d4cfc2SHong Zhang *nz = nztot; 1029d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1030d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1031a30f8f8cSSatish Balay PetscFunctionReturn(0); 1032a30f8f8cSSatish Balay } 1033a30f8f8cSSatish Balay 10344a2ae208SSatish Balay #undef __FUNCT__ 10354a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10361302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1037a30f8f8cSSatish Balay { 1038a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1039a30f8f8cSSatish Balay 1040a30f8f8cSSatish Balay PetscFunctionBegin; 1041abc0a331SBarry Smith if (!baij->getrowactive) { 1042abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1045a30f8f8cSSatish Balay PetscFunctionReturn(0); 1046a30f8f8cSSatish Balay } 1047a30f8f8cSSatish Balay 10484a2ae208SSatish Balay #undef __FUNCT__ 1049d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1050d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1051d0d4cfc2SHong Zhang { 1052d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1053d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1054d0d4cfc2SHong Zhang 1055d0d4cfc2SHong Zhang PetscFunctionBegin; 1056d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1057d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1058d0d4cfc2SHong Zhang } 1059d0d4cfc2SHong Zhang #undef __FUNCT__ 1060d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1061d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1062d0d4cfc2SHong Zhang { 1063d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1064d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1065d0d4cfc2SHong Zhang 1066d0d4cfc2SHong Zhang PetscFunctionBegin; 1067d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1068d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1069d0d4cfc2SHong Zhang } 1070d0d4cfc2SHong Zhang 1071d0d4cfc2SHong Zhang #undef __FUNCT__ 107299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 107399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 107499cafbc1SBarry Smith { 107599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 107699cafbc1SBarry Smith PetscErrorCode ierr; 107799cafbc1SBarry Smith 107899cafbc1SBarry Smith PetscFunctionBegin; 107999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 108099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 108199cafbc1SBarry Smith PetscFunctionReturn(0); 108299cafbc1SBarry Smith } 108399cafbc1SBarry Smith 108499cafbc1SBarry Smith #undef __FUNCT__ 108599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 108699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 108799cafbc1SBarry Smith { 108899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 108999cafbc1SBarry Smith PetscErrorCode ierr; 109099cafbc1SBarry Smith 109199cafbc1SBarry Smith PetscFunctionBegin; 109299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 109399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 109499cafbc1SBarry Smith PetscFunctionReturn(0); 109599cafbc1SBarry Smith } 109699cafbc1SBarry Smith 109799cafbc1SBarry Smith #undef __FUNCT__ 10984a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1099dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1100a30f8f8cSSatish Balay { 1101a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1102dfbe8321SBarry Smith PetscErrorCode ierr; 1103a30f8f8cSSatish Balay 1104a30f8f8cSSatish Balay PetscFunctionBegin; 1105a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1106a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1107a30f8f8cSSatish Balay PetscFunctionReturn(0); 1108a30f8f8cSSatish Balay } 1109a30f8f8cSSatish Balay 11104a2ae208SSatish Balay #undef __FUNCT__ 11114a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1112dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1113a30f8f8cSSatish Balay { 1114a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1115a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1116dfbe8321SBarry Smith PetscErrorCode ierr; 1117a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1118a30f8f8cSSatish Balay 1119a30f8f8cSSatish Balay PetscFunctionBegin; 1120d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1121a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1122a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1123a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1124a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1125a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1126a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1127a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1128a30f8f8cSSatish Balay info->nz_used = isend[0]; 1129a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1130a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1131a30f8f8cSSatish Balay info->memory = isend[3]; 1132a30f8f8cSSatish Balay info->mallocs = isend[4]; 1133a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11347adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1135a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1136a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1137a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1138a30f8f8cSSatish Balay info->memory = irecv[3]; 1139a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1140a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11417adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1142a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1143a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1144a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1145a30f8f8cSSatish Balay info->memory = irecv[3]; 1146a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1147a30f8f8cSSatish Balay } else { 114877431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1149a30f8f8cSSatish Balay } 1150a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1151a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1152a30f8f8cSSatish Balay info->factor_mallocs = 0; 1153a30f8f8cSSatish Balay PetscFunctionReturn(0); 1154a30f8f8cSSatish Balay } 1155a30f8f8cSSatish Balay 11564a2ae208SSatish Balay #undef __FUNCT__ 11574a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11584e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1159a30f8f8cSSatish Balay { 1160a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1161d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1162dfbe8321SBarry Smith PetscErrorCode ierr; 1163a30f8f8cSSatish Balay 1164a30f8f8cSSatish Balay PetscFunctionBegin; 1165e98b92d7SKris Buschelman switch (op) { 1166512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1167e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1168e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1169e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 11704e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11714e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1172e98b92d7SKris Buschelman break; 1173e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 11744e0d8c25SBarry Smith a->roworiented = flg; 11754e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11764e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1177e98b92d7SKris Buschelman break; 11784e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1179290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1180e98b92d7SKris Buschelman break; 1181e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 11824e0d8c25SBarry Smith a->donotstash = flg; 1183e98b92d7SKris Buschelman break; 1184e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 11854e0d8c25SBarry Smith a->ht_flag = flg; 1186e98b92d7SKris Buschelman break; 11879a4540c5SBarry Smith case MAT_HERMITIAN: 11884e0d8c25SBarry Smith if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 118977e54ba9SKris Buschelman case MAT_SYMMETRIC: 119077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 11919a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 11924e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1193290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 119477e54ba9SKris Buschelman break; 1195d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 11964e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1197d0d4cfc2SHong Zhang break; 1198d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 11994e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1200d0d4cfc2SHong Zhang break; 1201d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12024e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1203d0d4cfc2SHong Zhang break; 1204e98b92d7SKris Buschelman default: 1205ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1206a30f8f8cSSatish Balay } 1207a30f8f8cSSatish Balay PetscFunctionReturn(0); 1208a30f8f8cSSatish Balay } 1209a30f8f8cSSatish Balay 12104a2ae208SSatish Balay #undef __FUNCT__ 12118115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1212fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1213a30f8f8cSSatish Balay { 1214dfbe8321SBarry Smith PetscErrorCode ierr; 1215a30f8f8cSSatish Balay PetscFunctionBegin; 1216815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1217999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1218fc4dec0aSBarry Smith } 12198115998fSBarry Smith PetscFunctionReturn(0); 1220a30f8f8cSSatish Balay } 1221a30f8f8cSSatish Balay 12224a2ae208SSatish Balay #undef __FUNCT__ 12234a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1224dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1225a30f8f8cSSatish Balay { 1226a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1227a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1228dfbe8321SBarry Smith PetscErrorCode ierr; 12295e90f9d9SHong Zhang PetscInt nv,m,n; 1230b3bf805bSHong Zhang PetscTruth flg; 1231a30f8f8cSSatish Balay 1232a30f8f8cSSatish Balay PetscFunctionBegin; 1233a30f8f8cSSatish Balay if (ll != rr){ 1234b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1235b3bf805bSHong Zhang if (!flg) 123629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1237a30f8f8cSSatish Balay } 1238b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1239b3bf805bSHong Zhang 12405e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12415e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1242b3bf805bSHong Zhang 12435e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12445e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12455e90f9d9SHong Zhang 1246ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12475e90f9d9SHong Zhang 12485e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1249a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12505e90f9d9SHong Zhang 12515e90f9d9SHong Zhang /* scale the diagonal part */ 1252a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1253a30f8f8cSSatish Balay 12545e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1255ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1256a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1257a30f8f8cSSatish Balay PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12614a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1262dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1263a30f8f8cSSatish Balay { 1264f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1265dfbe8321SBarry Smith PetscErrorCode ierr; 1266a30f8f8cSSatish Balay 1267a30f8f8cSSatish Balay PetscFunctionBegin; 1268a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1269a30f8f8cSSatish Balay PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12726849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1273a30f8f8cSSatish Balay 12744a2ae208SSatish Balay #undef __FUNCT__ 12754a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1276dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1277a30f8f8cSSatish Balay { 1278a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1279a30f8f8cSSatish Balay Mat a,b,c,d; 1280a30f8f8cSSatish Balay PetscTruth flg; 1281dfbe8321SBarry Smith PetscErrorCode ierr; 1282a30f8f8cSSatish Balay 1283a30f8f8cSSatish Balay PetscFunctionBegin; 1284a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1285a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1286a30f8f8cSSatish Balay 1287a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1288abc0a331SBarry Smith if (flg) { 1289a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay } 12917adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1292a30f8f8cSSatish Balay PetscFunctionReturn(0); 1293a30f8f8cSSatish Balay } 1294a30f8f8cSSatish Balay 12954a2ae208SSatish Balay #undef __FUNCT__ 12963c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 12973c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 12983c896bc6SHong Zhang { 12993c896bc6SHong Zhang PetscErrorCode ierr; 13003c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13013c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13023c896bc6SHong Zhang 13033c896bc6SHong Zhang PetscFunctionBegin; 13043c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13053c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1306d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13073c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1308d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13093c896bc6SHong Zhang } else { 13103c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13113c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13123c896bc6SHong Zhang } 13133c896bc6SHong Zhang PetscFunctionReturn(0); 13143c896bc6SHong Zhang } 13153c896bc6SHong Zhang 13163c896bc6SHong Zhang #undef __FUNCT__ 13174a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1318dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1319273d9f13SBarry Smith { 1320dfbe8321SBarry Smith PetscErrorCode ierr; 1321273d9f13SBarry Smith 1322273d9f13SBarry Smith PetscFunctionBegin; 1323db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1324273d9f13SBarry Smith PetscFunctionReturn(0); 1325273d9f13SBarry Smith } 1326a5e6ed63SBarry Smith 13274fe895cdSHong Zhang #include "petscblaslapack.h" 13284fe895cdSHong Zhang #undef __FUNCT__ 13294fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13304fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13314fe895cdSHong Zhang { 13324fe895cdSHong Zhang PetscErrorCode ierr; 13334fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13344fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13354fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13364fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13374fe895cdSHong Zhang 13384fe895cdSHong Zhang PetscFunctionBegin; 13394fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13404fe895cdSHong Zhang PetscScalar alpha = a; 13414fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13424fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13430805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13444fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13454fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13464fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13470805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13484fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13494fe895cdSHong Zhang } else { 1350d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13514fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1352d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 13534fe895cdSHong Zhang } 13544fe895cdSHong Zhang PetscFunctionReturn(0); 13554fe895cdSHong Zhang } 13564fe895cdSHong Zhang 1357a5e6ed63SBarry Smith #undef __FUNCT__ 1358a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13591302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1360a5e6ed63SBarry Smith { 13616849ba73SBarry Smith PetscErrorCode ierr; 13621302d50aSBarry Smith PetscInt i; 1363a5e6ed63SBarry Smith PetscTruth flg; 1364a5e6ed63SBarry Smith 13656849ba73SBarry Smith PetscFunctionBegin; 1366a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1367a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1368a5e6ed63SBarry Smith if (!flg) { 13691302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1370a5e6ed63SBarry Smith } 1371a5e6ed63SBarry Smith } 1372a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1373a5e6ed63SBarry Smith PetscFunctionReturn(0); 1374a5e6ed63SBarry Smith } 1375a5e6ed63SBarry Smith 1376a5e6ed63SBarry Smith 1377a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1378a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1379a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1380a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1381a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1382a9d4b620SHong Zhang MatMult_MPISBAIJ, 138397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1384431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1385431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1386a30f8f8cSSatish Balay 0, 1387a30f8f8cSSatish Balay 0, 1388a30f8f8cSSatish Balay 0, 138997304618SKris Buschelman /*10*/ 0, 1390a30f8f8cSSatish Balay 0, 1391a30f8f8cSSatish Balay 0, 13922798e883SHong Zhang MatRelax_MPISBAIJ, 1393a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 139497304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1395a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1396a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1397a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1398a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 139997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1400a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1401a30f8f8cSSatish Balay 0, 1402a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1403a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1404dcf5cc72SBarry Smith /*25*/ 0, 1405a30f8f8cSSatish Balay 0, 1406a30f8f8cSSatish Balay 0, 1407a30f8f8cSSatish Balay 0, 1408a30f8f8cSSatish Balay 0, 140997304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1410b5df2d14SHong Zhang 0, 1411a30f8f8cSSatish Balay 0, 1412a30f8f8cSSatish Balay 0, 1413a30f8f8cSSatish Balay 0, 141497304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1415a30f8f8cSSatish Balay 0, 1416a30f8f8cSSatish Balay 0, 1417a30f8f8cSSatish Balay 0, 1418a30f8f8cSSatish Balay 0, 14194fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1420a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1421d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1422a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14233c896bc6SHong Zhang MatCopy_MPISBAIJ, 14248c07d4e3SBarry Smith /*45*/ 0, 1425a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1426a30f8f8cSSatish Balay 0, 1427a30f8f8cSSatish Balay 0, 1428a30f8f8cSSatish Balay 0, 1429521d7252SBarry Smith /*50*/ 0, 1430a30f8f8cSSatish Balay 0, 1431a30f8f8cSSatish Balay 0, 1432a30f8f8cSSatish Balay 0, 1433a30f8f8cSSatish Balay 0, 143497304618SKris Buschelman /*55*/ 0, 1435a30f8f8cSSatish Balay 0, 1436a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1437a30f8f8cSSatish Balay 0, 1438a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 143997304618SKris Buschelman /*60*/ 0, 1440a30f8f8cSSatish Balay 0, 1441a30f8f8cSSatish Balay 0, 1442357abbc8SBarry Smith 0, 144324d5174aSHong Zhang 0, 144497304618SKris Buschelman /*65*/ 0, 144524d5174aSHong Zhang 0, 144624d5174aSHong Zhang 0, 144724d5174aSHong Zhang 0, 144824d5174aSHong Zhang 0, 1449985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ, 145024d5174aSHong Zhang 0, 145197304618SKris Buschelman 0, 145297304618SKris Buschelman 0, 145397304618SKris Buschelman 0, 145497304618SKris Buschelman /*75*/ 0, 145597304618SKris Buschelman 0, 145697304618SKris Buschelman 0, 145797304618SKris Buschelman 0, 145897304618SKris Buschelman 0, 145997304618SKris Buschelman /*80*/ 0, 146097304618SKris Buschelman 0, 146197304618SKris Buschelman 0, 146297304618SKris Buschelman 0, 1463865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1464865e5f61SKris Buschelman /*85*/ 0, 1465865e5f61SKris Buschelman 0, 1466865e5f61SKris Buschelman 0, 1467865e5f61SKris Buschelman 0, 1468865e5f61SKris Buschelman 0, 1469865e5f61SKris Buschelman /*90*/ 0, 1470865e5f61SKris Buschelman 0, 1471865e5f61SKris Buschelman 0, 1472865e5f61SKris Buschelman 0, 1473865e5f61SKris Buschelman 0, 1474865e5f61SKris Buschelman /*95*/ 0, 1475865e5f61SKris Buschelman 0, 1476865e5f61SKris Buschelman 0, 147799cafbc1SBarry Smith 0, 147899cafbc1SBarry Smith 0, 147999cafbc1SBarry Smith /*100*/0, 148099cafbc1SBarry Smith 0, 148199cafbc1SBarry Smith 0, 148299cafbc1SBarry Smith 0, 148399cafbc1SBarry Smith 0, 148499cafbc1SBarry Smith /*105*/0, 148599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1486d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1487d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1488d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 148999cafbc1SBarry Smith }; 1490a30f8f8cSSatish Balay 1491a30f8f8cSSatish Balay 1492a30f8f8cSSatish Balay EXTERN_C_BEGIN 14934a2ae208SSatish Balay #undef __FUNCT__ 14944a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1495be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1496a30f8f8cSSatish Balay { 1497a30f8f8cSSatish Balay PetscFunctionBegin; 1498a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1499a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1500a30f8f8cSSatish Balay PetscFunctionReturn(0); 1501a30f8f8cSSatish Balay } 1502a30f8f8cSSatish Balay EXTERN_C_END 1503a30f8f8cSSatish Balay 1504273d9f13SBarry Smith EXTERN_C_BEGIN 15054a2ae208SSatish Balay #undef __FUNCT__ 1506a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1507be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1508a23d5eceSKris Buschelman { 1509a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1510dfbe8321SBarry Smith PetscErrorCode ierr; 1511db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1512a23d5eceSKris Buschelman 1513a23d5eceSKris Buschelman PetscFunctionBegin; 1514db4efbfdSBarry Smith if (bs < 0){ 15157adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1516db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15178c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1518db4efbfdSBarry Smith bs = PetscAbs(bs); 1519db4efbfdSBarry Smith } 1520db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 1521db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1522db4efbfdSBarry Smith } 1523db4efbfdSBarry Smith bs = newbs; 1524a23d5eceSKris Buschelman 1525a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1526a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 152777431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 152877431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1529899cda47SBarry Smith 1530d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 1531d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 1532d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 1533899cda47SBarry Smith 1534a23d5eceSKris Buschelman if (d_nnz) { 1535d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 153677431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1537a23d5eceSKris Buschelman } 1538a23d5eceSKris Buschelman } 1539a23d5eceSKris Buschelman if (o_nnz) { 1540d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 154177431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1542a23d5eceSKris Buschelman } 1543a23d5eceSKris Buschelman } 1544a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1545a23d5eceSKris Buschelman 1546a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1547d0f46423SBarry Smith mbs = B->rmap->n/bs; 1548d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1549d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1550d0f46423SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1551a23d5eceSKris Buschelman } 1552a23d5eceSKris Buschelman 1553d0f46423SBarry Smith B->rmap->bs = bs; 1554a23d5eceSKris Buschelman b->bs2 = bs*bs; 1555a23d5eceSKris Buschelman b->mbs = mbs; 1556a23d5eceSKris Buschelman b->nbs = mbs; 1557a23d5eceSKris Buschelman b->Mbs = Mbs; 1558a23d5eceSKris Buschelman b->Nbs = Mbs; 1559a23d5eceSKris Buschelman 1560a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1561d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1562a23d5eceSKris Buschelman } 1563d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1564d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1565a23d5eceSKris Buschelman 1566d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1567d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1568a23d5eceSKris Buschelman 1569f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1570d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 15719c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1572c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 157352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 15749c097c71SKris Buschelman 1575f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1576d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 15774aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1578589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 157952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1580a23d5eceSKris Buschelman 1581a23d5eceSKris Buschelman /* build cache for off array entries formed */ 15827adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1583a23d5eceSKris Buschelman 1584a23d5eceSKris Buschelman PetscFunctionReturn(0); 1585a23d5eceSKris Buschelman } 1586a23d5eceSKris Buschelman EXTERN_C_END 1587a23d5eceSKris Buschelman 15885c9eb25fSBarry Smith EXTERN_C_BEGIN 1589611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1590611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1591611f576cSBarry Smith #endif 1592611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 15935c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1594611f576cSBarry Smith #endif 15955c9eb25fSBarry Smith EXTERN_C_END 15965c9eb25fSBarry Smith 15970bad9183SKris Buschelman /*MC 1598fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 15990bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16000bad9183SKris Buschelman 16010bad9183SKris Buschelman Options Database Keys: 16020bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16030bad9183SKris Buschelman 16040bad9183SKris Buschelman Level: beginner 16050bad9183SKris Buschelman 16060bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16070bad9183SKris Buschelman M*/ 16080bad9183SKris Buschelman 1609a23d5eceSKris Buschelman EXTERN_C_BEGIN 1610a23d5eceSKris Buschelman #undef __FUNCT__ 16114a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1612be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1613b5df2d14SHong Zhang { 1614b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1615dfbe8321SBarry Smith PetscErrorCode ierr; 1616b5df2d14SHong Zhang PetscTruth flg; 1617b5df2d14SHong Zhang 1618b5df2d14SHong Zhang PetscFunctionBegin; 1619b5df2d14SHong Zhang 162038f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1621b0a32e0cSBarry Smith B->data = (void*)b; 1622b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1623b5df2d14SHong Zhang 1624b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1625b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1626b5df2d14SHong Zhang B->mapping = 0; 1627b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1628b5df2d14SHong Zhang 1629b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16307adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16317adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1632b5df2d14SHong Zhang 1633b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1634899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1635b5df2d14SHong Zhang 1636b5df2d14SHong Zhang /* build cache for off array entries formed */ 16377adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1638b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1639b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1640b5df2d14SHong Zhang b->garray = PETSC_NULL; 1641b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1642b5df2d14SHong Zhang 1643b5df2d14SHong Zhang /* stuff used in block assembly */ 1644b5df2d14SHong Zhang b->barray = 0; 1645b5df2d14SHong Zhang 1646b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1647b5df2d14SHong Zhang b->lvec = 0; 1648b5df2d14SHong Zhang b->Mvctx = 0; 164940781036SHong Zhang b->slvec0 = 0; 165040781036SHong Zhang b->slvec0b = 0; 165140781036SHong Zhang b->slvec1 = 0; 165240781036SHong Zhang b->slvec1a = 0; 165340781036SHong Zhang b->slvec1b = 0; 165440781036SHong Zhang b->sMvctx = 0; 1655b5df2d14SHong Zhang 1656b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1657b5df2d14SHong Zhang b->rowindices = 0; 1658b5df2d14SHong Zhang b->rowvalues = 0; 1659b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1660b5df2d14SHong Zhang 1661b5df2d14SHong Zhang /* hash table stuff */ 1662b5df2d14SHong Zhang b->ht = 0; 1663b5df2d14SHong Zhang b->hd = 0; 1664b5df2d14SHong Zhang b->ht_size = 0; 1665b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1666b5df2d14SHong Zhang b->ht_fact = 0; 1667b5df2d14SHong Zhang b->ht_total_ct = 0; 1668b5df2d14SHong Zhang b->ht_insert_ct = 0; 1669b5df2d14SHong Zhang 167059ffdab8SBarry Smith b->in_loc = 0; 167159ffdab8SBarry Smith b->v_loc = 0; 167259ffdab8SBarry Smith b->n_loc = 0; 16737adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 16748c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1675b5df2d14SHong Zhang if (flg) { 1676f6275e2eSBarry Smith PetscReal fact = 1.39; 16774e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 16788c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1679b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1680b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 16811e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1682b5df2d14SHong Zhang } 16838c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 16848c07d4e3SBarry Smith 1685611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 16865c9eb25fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_mumps_C", 16875c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 16885c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1689611f576cSBarry Smith #endif 1690611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16915c9eb25fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_spooles_C", 16925c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 16935c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1694611f576cSBarry Smith #endif 1695b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1696b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1697b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1698b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1699b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1700b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1701b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1702b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1703b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1704a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1705a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1706a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 170723ce1328SBarry Smith B->symmetric = PETSC_TRUE; 170823ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 170923ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 171023ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 171117667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1712b5df2d14SHong Zhang PetscFunctionReturn(0); 1713b5df2d14SHong Zhang } 1714273d9f13SBarry Smith EXTERN_C_END 1715b5df2d14SHong Zhang 1716209238afSKris Buschelman /*MC 1717002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1718209238afSKris Buschelman 1719209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1720209238afSKris Buschelman and MATMPISBAIJ otherwise. 1721209238afSKris Buschelman 1722209238afSKris Buschelman Options Database Keys: 1723209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1724209238afSKris Buschelman 1725209238afSKris Buschelman Level: beginner 1726209238afSKris Buschelman 1727209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1728209238afSKris Buschelman M*/ 1729209238afSKris Buschelman 1730209238afSKris Buschelman EXTERN_C_BEGIN 1731209238afSKris Buschelman #undef __FUNCT__ 1732209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1733be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1734dfbe8321SBarry Smith { 17356849ba73SBarry Smith PetscErrorCode ierr; 17361302d50aSBarry Smith PetscMPIInt size; 1737209238afSKris Buschelman 1738209238afSKris Buschelman PetscFunctionBegin; 17397adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1740209238afSKris Buschelman if (size == 1) { 1741209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1742209238afSKris Buschelman } else { 1743209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1744209238afSKris Buschelman } 1745209238afSKris Buschelman PetscFunctionReturn(0); 1746209238afSKris Buschelman } 1747209238afSKris Buschelman EXTERN_C_END 1748209238afSKris Buschelman 17494a2ae208SSatish Balay #undef __FUNCT__ 17504a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1751b5df2d14SHong Zhang /*@C 1752b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1753b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1754b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1755b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1756b5df2d14SHong Zhang 1757b5df2d14SHong Zhang Collective on Mat 1758b5df2d14SHong Zhang 1759b5df2d14SHong Zhang Input Parameters: 1760b5df2d14SHong Zhang + A - the matrix 1761b5df2d14SHong Zhang . bs - size of blockk 1762b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1763b5df2d14SHong Zhang submatrix (same for all local rows) 1764b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17656d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17666d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17676d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1768b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1769b5df2d14SHong Zhang submatrix (same for all local rows). 1770b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1771b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1772b5df2d14SHong Zhang each block row) or PETSC_NULL. 1773b5df2d14SHong Zhang 1774b5df2d14SHong Zhang 1775b5df2d14SHong Zhang Options Database Keys: 1776b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1777b5df2d14SHong Zhang block calculations (much slower) 1778b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1779b5df2d14SHong Zhang 1780b5df2d14SHong Zhang Notes: 1781b5df2d14SHong Zhang 1782b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1783b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1784b5df2d14SHong Zhang 178549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 178649a6f317SBarry Smith 1787b5df2d14SHong Zhang Storage Information: 1788b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1789b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1790b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1791b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1792b5df2d14SHong Zhang 1793b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1794b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1795b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1796b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1797b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1798b5df2d14SHong Zhang 1799aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1800aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1801aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1802aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1803aa95bbe8SBarry Smith 1804b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1805b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1806b5df2d14SHong Zhang 1807b5df2d14SHong Zhang .vb 1808b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1809b5df2d14SHong Zhang ------------------- 1810b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1811b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1812b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1813b5df2d14SHong Zhang ------------------- 1814b5df2d14SHong Zhang .ve 1815b5df2d14SHong Zhang 1816b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1817b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18186d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18196d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1820b5df2d14SHong Zhang 18216d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18226d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1823b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1824b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1825b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1826b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1827b5df2d14SHong Zhang matrices. 1828b5df2d14SHong Zhang 1829b5df2d14SHong Zhang Level: intermediate 1830b5df2d14SHong Zhang 1831b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1834b5df2d14SHong Zhang @*/ 1835be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1836b5df2d14SHong Zhang { 18371302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1838b5df2d14SHong Zhang 1839b5df2d14SHong Zhang PetscFunctionBegin; 1840a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1841a23d5eceSKris Buschelman if (f) { 1842a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1843b5df2d14SHong Zhang } 1844b5df2d14SHong Zhang PetscFunctionReturn(0); 1845b5df2d14SHong Zhang } 1846b5df2d14SHong Zhang 18474a2ae208SSatish Balay #undef __FUNCT__ 18484a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1849a30f8f8cSSatish Balay /*@C 1850a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1851a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1852a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1853a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1854a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1855a30f8f8cSSatish Balay 1856a30f8f8cSSatish Balay Collective on MPI_Comm 1857a30f8f8cSSatish Balay 1858a30f8f8cSSatish Balay Input Parameters: 1859a30f8f8cSSatish Balay + comm - MPI communicator 1860a30f8f8cSSatish Balay . bs - size of blockk 1861a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1862a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1863a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1864a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1865a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1866a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1867a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1868a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1869a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1870a30f8f8cSSatish Balay submatrix (same for all local rows) 1871a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18726d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18736d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18746d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1875a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1876a30f8f8cSSatish Balay submatrix (same for all local rows). 1877a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1878a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1879a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1880a30f8f8cSSatish Balay 1881a30f8f8cSSatish Balay Output Parameter: 1882a30f8f8cSSatish Balay . A - the matrix 1883a30f8f8cSSatish Balay 1884a30f8f8cSSatish Balay Options Database Keys: 1885a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1886a30f8f8cSSatish Balay block calculations (much slower) 1887a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1888a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1889a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1890a30f8f8cSSatish Balay 1891175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1892175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 1893175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 1894175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1895175b88e8SBarry Smith 1896a30f8f8cSSatish Balay Notes: 1897d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 18986d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1899d1be2dadSMatthew Knepley 1900a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1901a30f8f8cSSatish Balay (possibly both). 1902a30f8f8cSSatish Balay 1903a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1904a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1905a30f8f8cSSatish Balay 190649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 190749a6f317SBarry Smith 1908a30f8f8cSSatish Balay Storage Information: 1909a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1910a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1911a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1912a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1913a30f8f8cSSatish Balay 1914a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1915a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1916a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1917a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1918a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1919a30f8f8cSSatish Balay 1920a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1921a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1922a30f8f8cSSatish Balay 1923a30f8f8cSSatish Balay .vb 1924a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1925a30f8f8cSSatish Balay ------------------- 1926a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1927a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1928a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1929a30f8f8cSSatish Balay ------------------- 1930a30f8f8cSSatish Balay .ve 1931a30f8f8cSSatish Balay 1932a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1933a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19346d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19356d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1936a30f8f8cSSatish Balay 19376d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19386d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1939a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1940a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1941a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1942a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1943a30f8f8cSSatish Balay matrices. 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay Level: intermediate 1946a30f8f8cSSatish Balay 1947a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1948a30f8f8cSSatish Balay 1949a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1950a30f8f8cSSatish Balay @*/ 1951a30f8f8cSSatish Balay 1952be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1953a30f8f8cSSatish Balay { 19546849ba73SBarry Smith PetscErrorCode ierr; 19551302d50aSBarry Smith PetscMPIInt size; 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay PetscFunctionBegin; 1958f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1959f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1960273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1961273d9f13SBarry Smith if (size > 1) { 1962b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1963b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1964273d9f13SBarry Smith } else { 1965273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1966273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1967273d9f13SBarry Smith } 1968a30f8f8cSSatish Balay PetscFunctionReturn(0); 1969a30f8f8cSSatish Balay } 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay 19724a2ae208SSatish Balay #undef __FUNCT__ 19734a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 19746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1975a30f8f8cSSatish Balay { 1976a30f8f8cSSatish Balay Mat mat; 1977a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1978dfbe8321SBarry Smith PetscErrorCode ierr; 1979d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 1980387bc808SHong Zhang PetscScalar *array; 1981a30f8f8cSSatish Balay 1982a30f8f8cSSatish Balay PetscFunctionBegin; 1983a30f8f8cSSatish Balay *newmat = 0; 19847adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 1985d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 19867adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 19871d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1988d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr); 1989d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr); 1990e1b6402fSHong Zhang 199182327fa8SHong Zhang mat->factor = matin->factor; 1992273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 199382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 19947fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 19957fff6886SHong Zhang 1996b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1997a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1998a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1999a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2000a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2001a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2002a30f8f8cSSatish Balay 2003899cda47SBarry Smith 2004a30f8f8cSSatish Balay a->size = oldmat->size; 2005a30f8f8cSSatish Balay a->rank = oldmat->rank; 2006a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2007a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2008a30f8f8cSSatish Balay a->rowindices = 0; 2009a30f8f8cSSatish Balay a->rowvalues = 0; 2010a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2011a30f8f8cSSatish Balay a->barray = 0; 2012899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2013899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2014899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2015899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay /* hash table stuff */ 2018a30f8f8cSSatish Balay a->ht = 0; 2019a30f8f8cSSatish Balay a->hd = 0; 2020a30f8f8cSSatish Balay a->ht_size = 0; 2021a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2022a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2023a30f8f8cSSatish Balay a->ht_total_ct = 0; 2024a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2025a30f8f8cSSatish Balay 2026899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 20277adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 2028d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2029a30f8f8cSSatish Balay if (oldmat->colmap) { 2030a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2031a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2032a30f8f8cSSatish Balay #else 20331302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 203452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20351302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2036a30f8f8cSSatish Balay #endif 2037a30f8f8cSSatish Balay } else a->colmap = 0; 2038387bc808SHong Zhang 2039a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20401302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 204152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20421302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2043a30f8f8cSSatish Balay } else a->garray = 0; 2044a30f8f8cSSatish Balay 2045a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 204652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2047a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 204852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 204982327fa8SHong Zhang 205082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 205152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 205282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 205352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2054387bc808SHong Zhang 2055387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 20561ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2057387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2058387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 20591ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 20601ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2061387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 20621ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 206352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 206452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 206552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 206652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 206752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2068387bc808SHong Zhang 2069387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2070387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2071387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 207252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 207382327fa8SHong Zhang 2074a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 207552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2076a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 207752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 20787adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2079a30f8f8cSSatish Balay *newmat = mat; 2080a30f8f8cSSatish Balay PetscFunctionReturn(0); 2081a30f8f8cSSatish Balay } 2082a30f8f8cSSatish Balay 2083a30f8f8cSSatish Balay #include "petscsys.h" 2084a30f8f8cSSatish Balay 20854a2ae208SSatish Balay #undef __FUNCT__ 20864a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2087a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2088a30f8f8cSSatish Balay { 2089a30f8f8cSSatish Balay Mat A; 20906849ba73SBarry Smith PetscErrorCode ierr; 209113f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 209287828ca2SBarry Smith PetscScalar *vals,*buf; 2093a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2094a30f8f8cSSatish Balay MPI_Status status; 2095e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 209613f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 20972fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 20981302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 20991302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21001302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 210113f74950SBarry Smith int fd; 2102a30f8f8cSSatish Balay 2103a30f8f8cSSatish Balay PetscFunctionBegin; 210477925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21058c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21068c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2107a30f8f8cSSatish Balay 2108a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2109a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay if (!rank) { 2111b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2112a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2113552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2114a30f8f8cSSatish Balay if (header[3] < 0) { 211529bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2116a30f8f8cSSatish Balay } 2117a30f8f8cSSatish Balay } 2118a30f8f8cSSatish Balay 2119a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2120a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2121a30f8f8cSSatish Balay 212229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2123a30f8f8cSSatish Balay 2124a30f8f8cSSatish Balay /* 2125a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2126a30f8f8cSSatish Balay divisible by the blocksize 2127a30f8f8cSSatish Balay */ 2128a30f8f8cSSatish Balay Mbs = M/bs; 2129a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2130a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2131a30f8f8cSSatish Balay else Mbs++; 2132a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21331e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2134a30f8f8cSSatish Balay } 2135a30f8f8cSSatish Balay 2136a30f8f8cSSatish Balay /* determine ownership of all rows */ 2137a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2138a30f8f8cSSatish Balay m = mbs*bs; 2139a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2140a30f8f8cSSatish Balay browners = rowners + size + 1; 2141e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2142e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2143a30f8f8cSSatish Balay rowners[0] = 0; 2144a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2145a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2146a30f8f8cSSatish Balay rstart = rowners[rank]; 2147a30f8f8cSSatish Balay rend = rowners[rank+1]; 2148a30f8f8cSSatish Balay 2149a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 21502fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay if (!rank) { 21521302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2155a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2157a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2158a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay } else { 2160a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay } 2162a30f8f8cSSatish Balay 21630222edb1SHong Zhang if (!rank) { /* procs[0] */ 2164a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 21651302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 21661302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2167a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2168a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2169a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2170a30f8f8cSSatish Balay } 2171a30f8f8cSSatish Balay } 2172a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay 2174a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2175a30f8f8cSSatish Balay maxnz = 0; 2176a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2177a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2178a30f8f8cSSatish Balay } 21791302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay 2181a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2182a30f8f8cSSatish Balay nz = procsnz[0]; 21831302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2184a30f8f8cSSatish Balay mycols = ibuf; 2185a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2186a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2188a30f8f8cSSatish Balay 2189a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2190a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2191a30f8f8cSSatish Balay nz = procsnz[i]; 2192a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2193a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay } 2195a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2196a30f8f8cSSatish Balay if (size != 1) { 2197a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2198a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2200a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay } 2202a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22030222edb1SHong Zhang } else { /* procs[i], i>0 */ 2204a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2205a30f8f8cSSatish Balay nz = 0; 2206a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2207a30f8f8cSSatish Balay nz += locrowlens[i]; 2208a30f8f8cSSatish Balay } 22091302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2210a30f8f8cSSatish Balay mycols = ibuf; 2211a30f8f8cSSatish Balay /* receive message of column indices*/ 2212a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2213a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 221429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2215a30f8f8cSSatish Balay } 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22181302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22201302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22211302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2222a30f8f8cSSatish Balay masked1 = mask + Mbs; 2223a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2224a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2225a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2226a30f8f8cSSatish Balay dcount = 0; 2227a30f8f8cSSatish Balay odcount = 0; 2228a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2229a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2230a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22310222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2232a30f8f8cSSatish Balay if (!mask[tmp]) { 2233a30f8f8cSSatish Balay mask[tmp] = 1; 22340222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22350222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2236a30f8f8cSSatish Balay } 2237a30f8f8cSSatish Balay } 2238a30f8f8cSSatish Balay rowcount++; 2239a30f8f8cSSatish Balay } 2240a30f8f8cSSatish Balay 22410222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22420222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2243a30f8f8cSSatish Balay 2244a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2245a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2246a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2247a30f8f8cSSatish Balay } 2248a30f8f8cSSatish Balay 2249a30f8f8cSSatish Balay /* create our matrix */ 2250f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2251f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 225222191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 225322191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2254a30f8f8cSSatish Balay 2255a30f8f8cSSatish Balay if (!rank) { 225687828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2257a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2258a30f8f8cSSatish Balay nz = procsnz[0]; 2259a30f8f8cSSatish Balay vals = buf; 2260a30f8f8cSSatish Balay mycols = ibuf; 2261a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2262a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2264a30f8f8cSSatish Balay 2265a30f8f8cSSatish Balay /* insert into matrix */ 2266a30f8f8cSSatish Balay jj = rstart*bs; 2267a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22687e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2269a30f8f8cSSatish Balay mycols += locrowlens[i]; 2270a30f8f8cSSatish Balay vals += locrowlens[i]; 2271a30f8f8cSSatish Balay jj++; 2272a30f8f8cSSatish Balay } 22737e06b45fSHong Zhang 2274a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2275a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2276a30f8f8cSSatish Balay nz = procsnz[i]; 2277a30f8f8cSSatish Balay vals = buf; 2278a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 22797adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay } 2281a30f8f8cSSatish Balay /* the last proc */ 2282a30f8f8cSSatish Balay if (size != 1){ 2283a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2284a30f8f8cSSatish Balay vals = buf; 2285a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2286a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 22877adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2288a30f8f8cSSatish Balay } 2289a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22907e06b45fSHong Zhang 2291a30f8f8cSSatish Balay } else { 2292a30f8f8cSSatish Balay /* receive numeric values */ 229387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay /* receive message of values*/ 2296a30f8f8cSSatish Balay vals = buf; 2297a30f8f8cSSatish Balay mycols = ibuf; 22987adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2299a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 230029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2301a30f8f8cSSatish Balay 2302a30f8f8cSSatish Balay /* insert into matrix */ 2303a30f8f8cSSatish Balay jj = rstart*bs; 2304a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2305a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay mycols += locrowlens[i]; 2307a30f8f8cSSatish Balay vals += locrowlens[i]; 2308a30f8f8cSSatish Balay jj++; 2309a30f8f8cSSatish Balay } 2310a30f8f8cSSatish Balay } 23117e06b45fSHong Zhang 2312a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2313a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2314a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2315a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2316a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2317a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2318a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2319a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 232022191285SKris Buschelman *newmat = A; 2321a30f8f8cSSatish Balay PetscFunctionReturn(0); 2322a30f8f8cSSatish Balay } 2323a30f8f8cSSatish Balay 23244a2ae208SSatish Balay #undef __FUNCT__ 23254a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2326dcf5cc72SBarry Smith /*XXXXX@ 2327a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2328a30f8f8cSSatish Balay 2329a30f8f8cSSatish Balay Input Parameters: 2330a30f8f8cSSatish Balay . mat - the matrix 2331a30f8f8cSSatish Balay . fact - factor 2332a30f8f8cSSatish Balay 2333a30f8f8cSSatish Balay Collective on Mat 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay Level: advanced 2336a30f8f8cSSatish Balay 2337a30f8f8cSSatish Balay Notes: 2338a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2339a30f8f8cSSatish Balay 2340a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2341a30f8f8cSSatish Balay 2342a30f8f8cSSatish Balay .seealso: MatSetOption() 2343dcf5cc72SBarry Smith @XXXXX*/ 2344dcf5cc72SBarry Smith 234524d5174aSHong Zhang 23464a2ae208SSatish Balay #undef __FUNCT__ 2347985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2348985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 234924d5174aSHong Zhang { 235024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2351f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2352ca54ac64SHong Zhang PetscReal atmp; 235387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2354dfbe8321SBarry Smith PetscErrorCode ierr; 23551302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 23561302d50aSBarry Smith PetscMPIInt rank,size; 23571302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 235887828ca2SBarry Smith PetscScalar *va; 23598a1c53f2SBarry Smith MatScalar *ba; 2360f4c0e9e4SHong Zhang MPI_Status stat; 236124d5174aSHong Zhang 236224d5174aSHong Zhang PetscFunctionBegin; 2363985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2364985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 23651ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2366f4c0e9e4SHong Zhang 23677adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 23687adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2369f4c0e9e4SHong Zhang 2370d0f46423SBarry Smith bs = A->rmap->bs; 2371f4c0e9e4SHong Zhang mbs = a->mbs; 2372f4c0e9e4SHong Zhang Mbs = a->Mbs; 2373f4c0e9e4SHong Zhang ba = b->a; 2374f4c0e9e4SHong Zhang bi = b->i; 2375f4c0e9e4SHong Zhang bj = b->j; 2376f4c0e9e4SHong Zhang 2377f4c0e9e4SHong Zhang /* find ownerships */ 2378d0f46423SBarry Smith rowners_bs = A->rmap->range; 2379f4c0e9e4SHong Zhang 2380f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 238182502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2382ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2383f4c0e9e4SHong Zhang 2384f4c0e9e4SHong Zhang /* row_max for B */ 2385b8475685SHong Zhang if (rank != size-1){ 2386f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2387f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2388f4c0e9e4SHong Zhang brow = bs*i; 2389f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2390f4c0e9e4SHong Zhang bcol = bs*(*bj); 2391f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2392ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 239304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2394f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2395f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2396ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2397ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2398f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2399f4c0e9e4SHong Zhang } 2400f4c0e9e4SHong Zhang } 2401f4c0e9e4SHong Zhang bj++; 2402f4c0e9e4SHong Zhang } 2403f4c0e9e4SHong Zhang } 2404f4c0e9e4SHong Zhang 2405f4c0e9e4SHong Zhang /* send values to its owners */ 2406f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2407f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2408ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24097adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2410ca54ac64SHong Zhang } 2411f4c0e9e4SHong Zhang } 2412f4c0e9e4SHong Zhang 2413f4c0e9e4SHong Zhang /* receive values */ 2414ca54ac64SHong Zhang if (rank){ 2415f4c0e9e4SHong Zhang rvalues = work; 2416ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2417f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24187adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2419f4c0e9e4SHong Zhang /* process values */ 2420f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2421ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2422f4c0e9e4SHong Zhang } 2423f4c0e9e4SHong Zhang } 2424ca54ac64SHong Zhang } 2425f4c0e9e4SHong Zhang 24261ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2427ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 242824d5174aSHong Zhang PetscFunctionReturn(0); 242924d5174aSHong Zhang } 24302798e883SHong Zhang 24312798e883SHong Zhang #undef __FUNCT__ 24322798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24331302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24342798e883SHong Zhang { 24352798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2436dfbe8321SBarry Smith PetscErrorCode ierr; 2437d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2438efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2439ffe4fb16SHong Zhang Vec bb1; 2440ffe4fb16SHong Zhang 2441ffe4fb16SHong Zhang PetscFunctionBegin; 244277431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2443ffe4fb16SHong Zhang if (bs > 1) 2444ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2445ffe4fb16SHong Zhang 2446ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2447ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2448ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2449ffe4fb16SHong Zhang its--; 2450ffe4fb16SHong Zhang } 2451ffe4fb16SHong Zhang 2452ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2453ffe4fb16SHong Zhang while (its--){ 2454ffe4fb16SHong Zhang 2455ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2456ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2457ffe4fb16SHong Zhang 2458ffe4fb16SHong Zhang /* copy xx into slvec0a */ 24591ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 24601ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2461ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24621ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2463ffe4fb16SHong Zhang 2464efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2465ffe4fb16SHong Zhang 2466ffe4fb16SHong Zhang /* copy bb into slvec1a */ 24671ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 24681ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2469ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24701ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2471ffe4fb16SHong Zhang 2472ffe4fb16SHong Zhang /* set slvec1b = 0 */ 24732dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2474ffe4fb16SHong Zhang 2475ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 24761ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 24771ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2478ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2479ffe4fb16SHong Zhang 2480ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2481ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2482ffe4fb16SHong Zhang 2483ffe4fb16SHong Zhang /* local diagonal sweep */ 2484ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2485ffe4fb16SHong Zhang } 2486ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2487ffe4fb16SHong Zhang } else { 2488ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2489ffe4fb16SHong Zhang } 2490ffe4fb16SHong Zhang PetscFunctionReturn(0); 2491ffe4fb16SHong Zhang } 2492ffe4fb16SHong Zhang 2493ffe4fb16SHong Zhang #undef __FUNCT__ 2494ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 24951302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2496ffe4fb16SHong Zhang { 2497ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2498dfbe8321SBarry Smith PetscErrorCode ierr; 24992798e883SHong Zhang Vec lvec1,bb1; 25002798e883SHong Zhang 25012798e883SHong Zhang PetscFunctionBegin; 250277431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2503d0f46423SBarry Smith if (matin->rmap->bs > 1) 25042798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25052798e883SHong Zhang 2506c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25072798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2508bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25092798e883SHong Zhang its--; 25102798e883SHong Zhang } 25112798e883SHong Zhang 25122798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25132798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25142798e883SHong Zhang while (its--){ 2515ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25162798e883SHong Zhang 25172798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25182798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2519efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25202798e883SHong Zhang 2521ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25222798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2523ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25242798e883SHong Zhang 25252798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2526efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25272798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25282798e883SHong Zhang 2529ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 25302798e883SHong Zhang 2531c14dc6b6SHong Zhang /* diagonal sweep */ 2532bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25332798e883SHong Zhang } 25342798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25352798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2536c14dc6b6SHong Zhang } else { 2537c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2538c14dc6b6SHong Zhang } 25392798e883SHong Zhang PetscFunctionReturn(0); 25402798e883SHong Zhang } 25412798e883SHong Zhang 2542