1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237e56f5c9eSBarry Smith A->nonzerostate++; \ 238a30f8f8cSSatish Balay a_noinsert:; \ 239a30f8f8cSSatish Balay ailen[brow] = nrow; \ 240a8f51744SPierre Jolivet } while (0) 241e5e170daSBarry Smith 242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 243a8f51744SPierre Jolivet do { \ 244a30f8f8cSSatish Balay brow = row / bs; \ 2459371c9d4SSatish Balay rp = bj + bi[brow]; \ 2469371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2479371c9d4SSatish Balay rmax = bimax[brow]; \ 2489371c9d4SSatish Balay nrow = bilen[brow]; \ 249a30f8f8cSSatish Balay bcol = col / bs; \ 2509371c9d4SSatish Balay ridx = row % bs; \ 2519371c9d4SSatish Balay cidx = col % bs; \ 2529371c9d4SSatish Balay low = 0; \ 2539371c9d4SSatish Balay high = nrow; \ 254a30f8f8cSSatish Balay while (high - low > 3) { \ 255a30f8f8cSSatish Balay t = (low + high) / 2; \ 256a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 257a30f8f8cSSatish Balay else low = t; \ 258a30f8f8cSSatish Balay } \ 259a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 260a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 261a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 262a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 263a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 264a30f8f8cSSatish Balay else *bap = value; \ 265a30f8f8cSSatish Balay goto b_noinsert; \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay } \ 268a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2695f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 270fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 271a30f8f8cSSatish Balay N = nrow++ - 1; \ 272a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 276a30f8f8cSSatish Balay rp[_i] = bcol; \ 277a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 278e56f5c9eSBarry Smith B->nonzerostate++; \ 279a30f8f8cSSatish Balay b_noinsert:; \ 280a30f8f8cSSatish Balay bilen[brow] = nrow; \ 281a8f51744SPierre Jolivet } while (0) 282a30f8f8cSSatish Balay 283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 284da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 285a30f8f8cSSatish Balay */ 28666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 287d71ae5a4SJacob Faibussowitsch { 288a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 289a30f8f8cSSatish Balay MatScalar value; 290ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2911302d50aSBarry Smith PetscInt i, j, row, col; 292d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 293d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 294d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 300a30f8f8cSSatish Balay MatScalar *aa = a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 305a30f8f8cSSatish Balay MatScalar *ba = b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3081302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap, *bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3120298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3130298fd71SBarry Smith MatScalar *v_loc = NULL; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay if (!baij->donotstash) { 31759ffdab8SBarry Smith if (n > baij->n_loc) { 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32226fbe8dcSKarl Rupp 32359ffdab8SBarry Smith baij->n_loc = n; 32459ffdab8SBarry Smith } 32559ffdab8SBarry Smith in_loc = baij->in_loc; 32659ffdab8SBarry Smith v_loc = baij->v_loc; 327a30f8f8cSSatish Balay } 328a30f8f8cSSatish Balay 329a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 330a30f8f8cSSatish Balay if (im[i] < 0) continue; 3315f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 332a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 333a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 334a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33501b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33601b2bd88SHong Zhang if (a->ignore_ltriangular) { 33701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33901b2bd88SHong Zhang } 340a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 341a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3429371c9d4SSatish Balay brow = row / bs; 3439371c9d4SSatish Balay bcol = col / bs; 344a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 345db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 346db4deed7SKarl Rupp else value = v[i + j * m]; 347d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3489566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 349f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 350f7d195e4SLawrence Mitchell continue; 351f7d195e4SLawrence Mitchell } else { 352f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 353f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 354a30f8f8cSSatish Balay if (mat->was_assembled) { 35548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 357eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35871730473SSatish Balay col = col - 1; 359a30f8f8cSSatish Balay #else 36071730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 361a30f8f8cSSatish Balay #endif 362a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) { 3639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 364a30f8f8cSSatish Balay col = in[j]; 365a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 366a30f8f8cSSatish Balay B = baij->B; 367a30f8f8cSSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 3689371c9d4SSatish Balay bimax = b->imax; 3699371c9d4SSatish Balay bi = b->i; 3709371c9d4SSatish Balay bilen = b->ilen; 3719371c9d4SSatish Balay bj = b->j; 372a30f8f8cSSatish Balay ba = b->a; 37371730473SSatish Balay } else col += in[j] % bs; 374a30f8f8cSSatish Balay } else col = in[j]; 375db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 376db4deed7SKarl Rupp else value = v[i + j * m]; 377d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3789566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay } else { /* off processor entry */ 3825f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 383a30f8f8cSSatish Balay if (!baij->donotstash) { 3845080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 385a30f8f8cSSatish Balay n_loc = 0; 386a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 387f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 388a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 389a30f8f8cSSatish Balay if (roworiented) { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 391a30f8f8cSSatish Balay } else { 392a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay n_loc++; 395a30f8f8cSSatish Balay } 3969566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 404d71ae5a4SJacob Faibussowitsch { 40536bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 41036bd2089SBarry Smith const PetscScalar *value = v; 41136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41236bd2089SBarry Smith 41336bd2089SBarry Smith PetscFunctionBegin; 41436bd2089SBarry Smith if (col < row) { 4153ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41636bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41736bd2089SBarry Smith } 41836bd2089SBarry Smith rp = aj + ai[row]; 41936bd2089SBarry Smith ap = aa + bs2 * ai[row]; 42036bd2089SBarry Smith rmax = imax[row]; 42136bd2089SBarry Smith nrow = ailen[row]; 42236bd2089SBarry Smith value = v; 42336bd2089SBarry Smith low = 0; 42436bd2089SBarry Smith high = nrow; 42536bd2089SBarry Smith 42636bd2089SBarry Smith while (high - low > 7) { 42736bd2089SBarry Smith t = (low + high) / 2; 42836bd2089SBarry Smith if (rp[t] > col) high = t; 42936bd2089SBarry Smith else low = t; 43036bd2089SBarry Smith } 43136bd2089SBarry Smith for (i = low; i < high; i++) { 43236bd2089SBarry Smith if (rp[i] > col) break; 43336bd2089SBarry Smith if (rp[i] == col) { 43436bd2089SBarry Smith bap = ap + bs2 * i; 43536bd2089SBarry Smith if (roworiented) { 43636bd2089SBarry Smith if (is == ADD_VALUES) { 43736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 438ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43936bd2089SBarry Smith } 44036bd2089SBarry Smith } else { 44136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 442ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44336bd2089SBarry Smith } 44436bd2089SBarry Smith } 44536bd2089SBarry Smith } else { 44636bd2089SBarry Smith if (is == ADD_VALUES) { 44736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 448ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44936bd2089SBarry Smith } 45036bd2089SBarry Smith } else { 45136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 452ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45336bd2089SBarry Smith } 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith goto noinsert2; 45736bd2089SBarry Smith } 45836bd2089SBarry Smith } 45936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4605f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 46136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4629371c9d4SSatish Balay N = nrow++ - 1; 4639371c9d4SSatish Balay high++; 46436bd2089SBarry Smith /* shift up all the later entries in this row */ 4659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4669566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46736bd2089SBarry Smith rp[i] = col; 46836bd2089SBarry Smith bap = ap + bs2 * i; 46936bd2089SBarry Smith if (roworiented) { 47036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 471ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47236bd2089SBarry Smith } 47336bd2089SBarry Smith } else { 47436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 475ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } 47836bd2089SBarry Smith noinsert2:; 47936bd2089SBarry Smith ailen[row] = nrow; 4803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48136bd2089SBarry Smith } 48236bd2089SBarry Smith 48336bd2089SBarry Smith /* 48436bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48536bd2089SBarry Smith */ 486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 487d71ae5a4SJacob Faibussowitsch { 48836bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48936bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 49036bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 49136bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49236bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49336bd2089SBarry Smith const PetscScalar *value = v; 49436bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49536bd2089SBarry Smith 49636bd2089SBarry Smith PetscFunctionBegin; 49736bd2089SBarry Smith rp = aj + ai[row]; 49836bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49936bd2089SBarry Smith rmax = imax[row]; 50036bd2089SBarry Smith nrow = ailen[row]; 50136bd2089SBarry Smith low = 0; 50236bd2089SBarry Smith high = nrow; 50336bd2089SBarry Smith value = v; 50436bd2089SBarry Smith while (high - low > 7) { 50536bd2089SBarry Smith t = (low + high) / 2; 50636bd2089SBarry Smith if (rp[t] > col) high = t; 50736bd2089SBarry Smith else low = t; 50836bd2089SBarry Smith } 50936bd2089SBarry Smith for (i = low; i < high; i++) { 51036bd2089SBarry Smith if (rp[i] > col) break; 51136bd2089SBarry Smith if (rp[i] == col) { 51236bd2089SBarry Smith bap = ap + bs2 * i; 51336bd2089SBarry Smith if (roworiented) { 51436bd2089SBarry Smith if (is == ADD_VALUES) { 51536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 516ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } else { 51936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 520ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 52136bd2089SBarry Smith } 52236bd2089SBarry Smith } 52336bd2089SBarry Smith } else { 52436bd2089SBarry Smith if (is == ADD_VALUES) { 52536bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 526ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52736bd2089SBarry Smith bap += bs; 52836bd2089SBarry Smith } 52936bd2089SBarry Smith } else { 53036bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 531ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53236bd2089SBarry Smith bap += bs; 53336bd2089SBarry Smith } 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith goto noinsert2; 53736bd2089SBarry Smith } 53836bd2089SBarry Smith } 53936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5405f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 54136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5429371c9d4SSatish Balay N = nrow++ - 1; 5439371c9d4SSatish Balay high++; 54436bd2089SBarry Smith /* shift up all the later entries in this row */ 5459566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5469566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54736bd2089SBarry Smith rp[i] = col; 54836bd2089SBarry Smith bap = ap + bs2 * i; 54936bd2089SBarry Smith if (roworiented) { 55036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 551ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55236bd2089SBarry Smith } 55336bd2089SBarry Smith } else { 55436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 555ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55636bd2089SBarry Smith } 55736bd2089SBarry Smith } 55836bd2089SBarry Smith noinsert2:; 55936bd2089SBarry Smith ailen[row] = nrow; 5603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56136bd2089SBarry Smith } 56236bd2089SBarry Smith 56336bd2089SBarry Smith /* 56436bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56536bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56636bd2089SBarry Smith */ 56766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 568d71ae5a4SJacob Faibussowitsch { 5690880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 570f15d580aSBarry Smith const MatScalar *value; 571f15d580aSBarry Smith MatScalar *barray = baij->barray; 572ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 573899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 574476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 575476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5760880e062SHong Zhang 577a30f8f8cSSatish Balay PetscFunctionBegin; 5780880e062SHong Zhang if (!barray) { 5799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5800880e062SHong Zhang baij->barray = barray; 5810880e062SHong Zhang } 5820880e062SHong Zhang 5830880e062SHong Zhang if (roworiented) { 5840880e062SHong Zhang stepval = (n - 1) * bs; 5850880e062SHong Zhang } else { 5860880e062SHong Zhang stepval = (m - 1) * bs; 5870880e062SHong Zhang } 5880880e062SHong Zhang for (i = 0; i < m; i++) { 5890880e062SHong Zhang if (im[i] < 0) continue; 5906bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5910880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5920880e062SHong Zhang row = im[i] - rstart; 5930880e062SHong Zhang for (j = 0; j < n; j++) { 594f3f98c53SJed Brown if (im[i] > in[j]) { 595f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 596e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 597f3f98c53SJed Brown } 5980880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5990880e062SHong Zhang if ((roworiented) && (n == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 6010880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 602f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6030880e062SHong Zhang } else { /* Here a copy is required */ 6040880e062SHong Zhang if (roworiented) { 6050880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6060880e062SHong Zhang } else { 6070880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6080880e062SHong Zhang } 6090880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 610ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6110880e062SHong Zhang } 6120880e062SHong Zhang barray -= bs2; 6130880e062SHong Zhang } 6140880e062SHong Zhang 6150880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6160880e062SHong Zhang col = in[j] - cstart; 6179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 618f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 619f7d195e4SLawrence Mitchell continue; 620f7d195e4SLawrence Mitchell } else { 621f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6220880e062SHong Zhang if (mat->was_assembled) { 62348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6240880e062SHong Zhang 6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6260880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6279371c9d4SSatish Balay { 6289371c9d4SSatish Balay PetscInt data; 629eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 63008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6310880e062SHong Zhang } 6320880e062SHong Zhang #else 63308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6340880e062SHong Zhang #endif 6350880e062SHong Zhang #endif 6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 637eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 6380880e062SHong Zhang col = (col - 1) / bs; 6390880e062SHong Zhang #else 6400880e062SHong Zhang col = (baij->colmap[in[j]] - 1) / bs; 6410880e062SHong Zhang #endif 6420880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 6439566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6440880e062SHong Zhang col = in[j]; 6450880e062SHong Zhang } 64626fbe8dcSKarl Rupp } else col = in[j]; 6479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6480880e062SHong Zhang } 6490880e062SHong Zhang } 6500880e062SHong Zhang } else { 6515f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6520880e062SHong Zhang if (!baij->donotstash) { 6530880e062SHong Zhang if (roworiented) { 6549566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6550880e062SHong Zhang } else { 6569566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6570880e062SHong Zhang } 6580880e062SHong Zhang } 6590880e062SHong Zhang } 6600880e062SHong Zhang } 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 66466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 665d71ae5a4SJacob Faibussowitsch { 666f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 667d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 668d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay PetscFunctionBegin; 671a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 67254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 67354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 674a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 675a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 676a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 67754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 679a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 680a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 682a30f8f8cSSatish Balay } else { 68348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 685eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 686a30f8f8cSSatish Balay data--; 687a30f8f8cSSatish Balay #else 688a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 689a30f8f8cSSatish Balay #endif 690a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 691a30f8f8cSSatish Balay else { 692a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6939566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay } 697f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 698a30f8f8cSSatish Balay } 6993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay 70266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 703d71ae5a4SJacob Faibussowitsch { 704a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 705a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay PetscFunctionBegin; 708a30f8f8cSSatish Balay if (baij->size == 1) { 7099566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 710a30f8f8cSSatish Balay } else { 711a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 7129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7139566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7149371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7159371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7169566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7179371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7189371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7220b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7230b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7240b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 7250b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 726899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 727d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7280b8dc8d2SHong Zhang MatScalar *v; 7290b8dc8d2SHong Zhang 7309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 7319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7320b8dc8d2SHong Zhang /* Amat */ 7339371c9d4SSatish Balay v = amat->a; 7349371c9d4SSatish Balay jj = amat->j; 7350b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7360b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7370b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7380b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7399371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7409371c9d4SSatish Balay jj++; 7410b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7420b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7439371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7449371c9d4SSatish Balay v++; 7450b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7460b8dc8d2SHong Zhang /* non-diagonal block */ 7470b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7480b8dc8d2SHong Zhang } 7490b8dc8d2SHong Zhang } 7500b8dc8d2SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7520b8dc8d2SHong Zhang } 7530b8dc8d2SHong Zhang /* Bmat */ 7549371c9d4SSatish Balay v = bmat->a; 7559371c9d4SSatish Balay jj = bmat->j; 7560b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7570b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7580b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7590b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7609371c9d4SSatish Balay gcol = bs * garray[*jj]; 7619371c9d4SSatish Balay jj++; 7620b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7630b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7649371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7659371c9d4SSatish Balay v++; 7660b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7670b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7680b8dc8d2SHong Zhang } 7690b8dc8d2SHong Zhang } 7700b8dc8d2SHong Zhang } 7719566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7720b8dc8d2SHong Zhang } 7731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7740b8dc8d2SHong Zhang *norm = 0.0; 775d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7760b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7770b8dc8d2SHong Zhang } 7789566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 779f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 780a30f8f8cSSatish Balay } 7813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay 78466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 785d71ae5a4SJacob Faibussowitsch { 786a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7871302d50aSBarry Smith PetscInt nstash, reallocs; 788a30f8f8cSSatish Balay 789a30f8f8cSSatish Balay PetscFunctionBegin; 7903ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 791a30f8f8cSSatish Balay 7929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7949566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7959566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7969566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7979566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay 80166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 802d71ae5a4SJacob Faibussowitsch { 803a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 804a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 80513f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 806e44c0bd4SBarry Smith PetscInt *row, *col; 807ace3abfcSBarry Smith PetscBool other_disassembled; 80813f74950SBarry Smith PetscMPIInt n; 809ace3abfcSBarry Smith PetscBool r1, r2, r3; 810a30f8f8cSSatish Balay MatScalar *val; 811a30f8f8cSSatish Balay 81291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 813a30f8f8cSSatish Balay PetscFunctionBegin; 8144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 815a30f8f8cSSatish Balay while (1) { 8169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 817a30f8f8cSSatish Balay if (!flg) break; 818a30f8f8cSSatish Balay 819a30f8f8cSSatish Balay for (i = 0; i < n;) { 820a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 82126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 82226fbe8dcSKarl Rupp if (row[j] != rstart) break; 82326fbe8dcSKarl Rupp } 824a30f8f8cSSatish Balay if (j < n) ncols = j - i; 825a30f8f8cSSatish Balay else ncols = n - i; 826a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 828a30f8f8cSSatish Balay i = j; 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay } 8319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 832a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 833a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 834a30f8f8cSSatish Balay restore the original flags */ 835a30f8f8cSSatish Balay r1 = baij->roworiented; 836a30f8f8cSSatish Balay r2 = a->roworiented; 83791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 83826fbe8dcSKarl Rupp 839a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 840a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 84126fbe8dcSKarl Rupp 84291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 843a30f8f8cSSatish Balay while (1) { 8449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 845a30f8f8cSSatish Balay if (!flg) break; 846a30f8f8cSSatish Balay 847a30f8f8cSSatish Balay for (i = 0; i < n;) { 848a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 84926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 85026fbe8dcSKarl Rupp if (row[j] != rstart) break; 85126fbe8dcSKarl Rupp } 852a30f8f8cSSatish Balay if (j < n) ncols = j - i; 853a30f8f8cSSatish Balay else ncols = n - i; 8549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 855a30f8f8cSSatish Balay i = j; 856a30f8f8cSSatish Balay } 857a30f8f8cSSatish Balay } 8589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 85926fbe8dcSKarl Rupp 860a30f8f8cSSatish Balay baij->roworiented = r1; 861a30f8f8cSSatish Balay a->roworiented = r2; 86226fbe8dcSKarl Rupp 86391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 871a30f8f8cSSatish Balay /* 872a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 873a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 874a30f8f8cSSatish Balay */ 875a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 87748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay 8809371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 883a30f8f8cSSatish Balay 8849566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 88526fbe8dcSKarl Rupp 886f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8874f9cfa9eSBarry Smith 8884f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8894f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 890e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 892e56f5c9eSBarry Smith } 8933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8979804daf3SBarry Smith #include <petscdraw.h> 898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 899d71ae5a4SJacob Faibussowitsch { 900a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 901d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 9027da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 903ace3abfcSBarry Smith PetscBool iascii, isdraw; 904b0a32e0cSBarry Smith PetscViewer sviewer; 905f3ef73ceSBarry Smith PetscViewerFormat format; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 9089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 91032077d6dSBarry Smith if (iascii) { 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 912456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 913a30f8f8cSSatish Balay MatInfo info; 9149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9179371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9189371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9199566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9269566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 928fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 931c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay } 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay if (isdraw) { 937b0a32e0cSBarry Smith PetscDraw draw; 938ace3abfcSBarry Smith PetscBool isnull; 9399566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9409566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9413ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 942a30f8f8cSSatish Balay } 943a30f8f8cSSatish Balay 9447da1fb6eSBarry Smith { 945a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 946a30f8f8cSSatish Balay Mat A; 94765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 94865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 949d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 950a30f8f8cSSatish Balay MatScalar *a; 9513e219373SBarry Smith const char *matname; 952a30f8f8cSSatish Balay 953f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 955dd400576SPatrick Sanan if (rank == 0) { 9569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 957a30f8f8cSSatish Balay } else { 9589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 959a30f8f8cSSatish Balay } 9609566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9619566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9629566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay /* copy over the A part */ 96565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9669371c9d4SSatish Balay ai = Aloc->i; 9679371c9d4SSatish Balay aj = Aloc->j; 9689371c9d4SSatish Balay a = Aloc->a; 9699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 970a30f8f8cSSatish Balay 971a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 972e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 974a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 975e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 976a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 97826fbe8dcSKarl Rupp col++; 97926fbe8dcSKarl Rupp a += bs; 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay /* copy over the B part */ 98465d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9859371c9d4SSatish Balay ai = Bloc->i; 9869371c9d4SSatish Balay aj = Bloc->j; 9879371c9d4SSatish Balay a = Bloc->a; 988a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 989e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 99026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 991a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 992a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 993a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 99526fbe8dcSKarl Rupp col++; 99626fbe8dcSKarl Rupp a += bs; 997a30f8f8cSSatish Balay } 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay } 10009566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 1003a30f8f8cSSatish Balay /* 1004a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 1005b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 1006a30f8f8cSSatish Balay */ 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 100823a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1009dd400576SPatrick Sanan if (rank == 0) { 101023a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname)); 10119566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer)); 1012a30f8f8cSSatish Balay } 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10149566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1016a30f8f8cSSatish Balay } 10173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay 1020618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1021618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1022d1654148SHong Zhang 102366976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1024d71ae5a4SJacob Faibussowitsch { 1025ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1026a30f8f8cSSatish Balay 1027a30f8f8cSSatish Balay PetscFunctionBegin; 10289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1032d1654148SHong Zhang if (iascii || isdraw || issocket) { 10339566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10341baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1036a30f8f8cSSatish Balay } 1037a30f8f8cSSatish Balay 1038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1039d71ae5a4SJacob Faibussowitsch { 1040547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1041eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10426de40e93SBarry Smith PetscScalar *from; 10436de40e93SBarry Smith const PetscScalar *x; 1044547795f9SHong Zhang 1045547795f9SHong Zhang PetscFunctionBegin; 1046547795f9SHong Zhang /* diagonal part */ 10479566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1048629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1049629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1050629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1051547795f9SHong Zhang 1052547795f9SHong Zhang /* subdiagonal part */ 10535f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1055547795f9SHong Zhang 1056547795f9SHong Zhang /* copy x into the vec slvec0 */ 10579566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1059547795f9SHong Zhang 10609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1063547795f9SHong Zhang 10649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1066547795f9SHong Zhang /* supperdiagonal part */ 10679566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1069547795f9SHong Zhang } 1070547795f9SHong Zhang 107166976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1072d71ae5a4SJacob Faibussowitsch { 1073a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1074eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1075d9ca1df4SBarry Smith PetscScalar *from; 1076d9ca1df4SBarry Smith const PetscScalar *x; 1077a9d4b620SHong Zhang 1078a9d4b620SHong Zhang PetscFunctionBegin; 1079a9d4b620SHong Zhang /* diagonal part */ 10809566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1081629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1082629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1083629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1084a9d4b620SHong Zhang 1085a9d4b620SHong Zhang /* subdiagonal part */ 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1087fc165ae2SBarry Smith 1088a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10899566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1091a9d4b620SHong Zhang 10929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1095fc165ae2SBarry Smith 10969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1098a9d4b620SHong Zhang /* supperdiagonal part */ 10999566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 11003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1101a9d4b620SHong Zhang } 1102a9d4b620SHong Zhang 110366976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 110466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1105d71ae5a4SJacob Faibussowitsch { 1106eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1107eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1108629a200eSBarry Smith PetscScalar *from; 1109eb1ec7c1SStefano Zampini const PetscScalar *x; 1110eb1ec7c1SStefano Zampini 1111eb1ec7c1SStefano Zampini PetscFunctionBegin; 1112eb1ec7c1SStefano Zampini /* diagonal part */ 11139566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1114629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1115629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1116eb1ec7c1SStefano Zampini 1117eb1ec7c1SStefano Zampini /* subdiagonal part */ 11185f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11199566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1120eb1ec7c1SStefano Zampini 1121eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11229566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1126eb1ec7c1SStefano Zampini 11279566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1130eb1ec7c1SStefano Zampini 1131eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11329566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1134eb1ec7c1SStefano Zampini } 113566976f2fSJacob Faibussowitsch #endif 1136eb1ec7c1SStefano Zampini 113766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1138d71ae5a4SJacob Faibussowitsch { 1139de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1140d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1141629a200eSBarry Smith PetscScalar *from; 1142d9ca1df4SBarry Smith const PetscScalar *x; 1143a9d4b620SHong Zhang 1144a9d4b620SHong Zhang PetscFunctionBegin; 1145a9d4b620SHong Zhang /* diagonal part */ 11469566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1147629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1148629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1149a9d4b620SHong Zhang 1150a9d4b620SHong Zhang /* subdiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1152a9d4b620SHong Zhang 1153a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11549566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11569566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1158a9d4b620SHong Zhang 11599566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1162a9d4b620SHong Zhang 1163a9d4b620SHong Zhang /* supperdiagonal part */ 11649566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1166a9d4b620SHong Zhang } 1167a9d4b620SHong Zhang 1168a30f8f8cSSatish Balay /* 1169a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1170a30f8f8cSSatish Balay diagonal block 1171a30f8f8cSSatish Balay */ 117266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1173d71ae5a4SJacob Faibussowitsch { 1174a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1175a30f8f8cSSatish Balay 1176a30f8f8cSSatish Balay PetscFunctionBegin; 117708401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11789566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1180a30f8f8cSSatish Balay } 1181a30f8f8cSSatish Balay 118266976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1183d71ae5a4SJacob Faibussowitsch { 1184a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1185a30f8f8cSSatish Balay 1186a30f8f8cSSatish Balay PetscFunctionBegin; 11879566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11889566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay 119266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1193d71ae5a4SJacob Faibussowitsch { 1194d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1195d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1196d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1197d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1198899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1199d0d4cfc2SHong Zhang 1200a30f8f8cSSatish Balay PetscFunctionBegin; 12015f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1202d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1203d0d4cfc2SHong Zhang 1204d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1205d0d4cfc2SHong Zhang /* 1206d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1207d0d4cfc2SHong Zhang */ 1208d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1209d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1210d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1211d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1212d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 121326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1214d0d4cfc2SHong Zhang } 12159566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1216d0d4cfc2SHong Zhang } 1217d0d4cfc2SHong Zhang 12185f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1219d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1220d0d4cfc2SHong Zhang 12219371c9d4SSatish Balay pvA = &vworkA; 12229371c9d4SSatish Balay pcA = &cworkA; 12239371c9d4SSatish Balay pvB = &vworkB; 12249371c9d4SSatish Balay pcB = &cworkB; 12259371c9d4SSatish Balay if (!v) { 12269371c9d4SSatish Balay pvA = NULL; 12279371c9d4SSatish Balay pvB = NULL; 12289371c9d4SSatish Balay } 12299371c9d4SSatish Balay if (!idx) { 12309371c9d4SSatish Balay pcA = NULL; 12319371c9d4SSatish Balay if (!v) pcB = NULL; 12329371c9d4SSatish Balay } 12339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12349566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1235d0d4cfc2SHong Zhang nztot = nzA + nzB; 1236d0d4cfc2SHong Zhang 1237d0d4cfc2SHong Zhang cmap = mat->garray; 1238d0d4cfc2SHong Zhang if (v || idx) { 1239d0d4cfc2SHong Zhang if (nztot) { 1240d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1241d0d4cfc2SHong Zhang PetscInt imark = -1; 1242d0d4cfc2SHong Zhang if (v) { 1243d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1244d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1245d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1246d0d4cfc2SHong Zhang else break; 1247d0d4cfc2SHong Zhang } 1248d0d4cfc2SHong Zhang imark = i; 1249d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1250d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1251d0d4cfc2SHong Zhang } 1252d0d4cfc2SHong Zhang if (idx) { 1253d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1254d0d4cfc2SHong Zhang if (imark > -1) { 1255ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1256d0d4cfc2SHong Zhang } else { 1257d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 125826fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1259d0d4cfc2SHong Zhang else break; 1260d0d4cfc2SHong Zhang } 1261d0d4cfc2SHong Zhang imark = i; 1262d0d4cfc2SHong Zhang } 1263d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1264d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1265d0d4cfc2SHong Zhang } 1266d0d4cfc2SHong Zhang } else { 1267f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1268f4259b30SLisandro Dalcin if (v) *v = NULL; 1269d0d4cfc2SHong Zhang } 1270d0d4cfc2SHong Zhang } 1271d0d4cfc2SHong Zhang *nz = nztot; 12729566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12739566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1275a30f8f8cSSatish Balay } 1276a30f8f8cSSatish Balay 127766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1278d71ae5a4SJacob Faibussowitsch { 1279a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1280a30f8f8cSSatish Balay 1281a30f8f8cSSatish Balay PetscFunctionBegin; 12825f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1283a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1285a30f8f8cSSatish Balay } 1286a30f8f8cSSatish Balay 128766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1288d71ae5a4SJacob Faibussowitsch { 1289d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1290d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1291d0d4cfc2SHong Zhang 1292d0d4cfc2SHong Zhang PetscFunctionBegin; 1293d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1295d0d4cfc2SHong Zhang } 129666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1297d71ae5a4SJacob Faibussowitsch { 1298d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1299d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1300d0d4cfc2SHong Zhang 1301d0d4cfc2SHong Zhang PetscFunctionBegin; 1302d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 13033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1304d0d4cfc2SHong Zhang } 1305d0d4cfc2SHong Zhang 130666976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1307d71ae5a4SJacob Faibussowitsch { 13085f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 13095f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13102726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 13112726fb6dSPierre Jolivet 13129566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13139566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13145f80ce2aSJacob Faibussowitsch } 13153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13162726fb6dSPierre Jolivet } 13172726fb6dSPierre Jolivet 131866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1319d71ae5a4SJacob Faibussowitsch { 132099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 132199cafbc1SBarry Smith 132299cafbc1SBarry Smith PetscFunctionBegin; 13239566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13249566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132699cafbc1SBarry Smith } 132799cafbc1SBarry Smith 132866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1329d71ae5a4SJacob Faibussowitsch { 133099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 133199cafbc1SBarry Smith 133299cafbc1SBarry Smith PetscFunctionBegin; 13339566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13349566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133699cafbc1SBarry Smith } 133799cafbc1SBarry Smith 13387dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 133936032a97SHong Zhang Input: isrow - distributed(parallel), 134036032a97SHong Zhang iscol_local - locally owned (seq) 134136032a97SHong Zhang */ 134266976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1343d71ae5a4SJacob Faibussowitsch { 13448f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13458f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 134636032a97SHong Zhang 134736032a97SHong Zhang PetscFunctionBegin; 134866976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13509566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 135166976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13528f46ffcaSHong Zhang 13539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13558f46ffcaSHong Zhang 13569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13609566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13619566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13628f46ffcaSHong Zhang 13638f46ffcaSHong Zhang nmatch = 0; 13648f46ffcaSHong Zhang k = 0; 13658f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13668f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13678f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13689371c9d4SSatish Balay k = j; 13699371c9d4SSatish Balay nmatch++; 13708f46ffcaSHong Zhang break; 13718f46ffcaSHong Zhang } 13728f46ffcaSHong Zhang } 13738f46ffcaSHong Zhang } 13749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13759566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13769566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13779566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13781098a8e8SHong Zhang if (nmatch < sz1) { 13791098a8e8SHong Zhang *flg = PETSC_FALSE; 13801098a8e8SHong Zhang } else { 13811098a8e8SHong Zhang *flg = PETSC_TRUE; 13821098a8e8SHong Zhang } 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13848f46ffcaSHong Zhang } 138536032a97SHong Zhang 138666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1387d71ae5a4SJacob Faibussowitsch { 138836032a97SHong Zhang IS iscol_local; 138936032a97SHong Zhang PetscInt csize; 139036032a97SHong Zhang 139136032a97SHong Zhang PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 139336032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13955f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 139636032a97SHong Zhang } else { 139766976f2fSJacob Faibussowitsch PetscBool issorted, isequal; 1398068661f9SToby Isaac 13999566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 14009566063dSJacob Faibussowitsch PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 14019566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 14025f80ce2aSJacob Faibussowitsch PetscCheck(isequal && issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must equal isrow and be sorted"); 14038f46ffcaSHong Zhang } 14048f46ffcaSHong Zhang 14057dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14069566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 14078f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14089566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14108f46ffcaSHong Zhang } 14113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14128f46ffcaSHong Zhang } 14138f46ffcaSHong Zhang 141466976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1415d71ae5a4SJacob Faibussowitsch { 1416a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1417a30f8f8cSSatish Balay 1418a30f8f8cSSatish Balay PetscFunctionBegin; 14199566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1422a30f8f8cSSatish Balay } 1423a30f8f8cSSatish Balay 142466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1425d71ae5a4SJacob Faibussowitsch { 1426a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1427a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14283966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1429a30f8f8cSSatish Balay 1430a30f8f8cSSatish Balay PetscFunctionBegin; 1431d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 143226fbe8dcSKarl Rupp 14339566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 143426fbe8dcSKarl Rupp 14359371c9d4SSatish Balay isend[0] = info->nz_used; 14369371c9d4SSatish Balay isend[1] = info->nz_allocated; 14379371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14389371c9d4SSatish Balay isend[3] = info->memory; 14399371c9d4SSatish Balay isend[4] = info->mallocs; 144026fbe8dcSKarl Rupp 14419566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 144226fbe8dcSKarl Rupp 14439371c9d4SSatish Balay isend[0] += info->nz_used; 14449371c9d4SSatish Balay isend[1] += info->nz_allocated; 14459371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14469371c9d4SSatish Balay isend[3] += info->memory; 14479371c9d4SSatish Balay isend[4] += info->mallocs; 1448a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1449a30f8f8cSSatish Balay info->nz_used = isend[0]; 1450a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1451a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1452a30f8f8cSSatish Balay info->memory = isend[3]; 1453a30f8f8cSSatish Balay info->mallocs = isend[4]; 1454a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14551c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 145626fbe8dcSKarl Rupp 1457a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1458a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1459a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1460a30f8f8cSSatish Balay info->memory = irecv[3]; 1461a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1462a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 146426fbe8dcSKarl Rupp 1465a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1466a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1467a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1468a30f8f8cSSatish Balay info->memory = irecv[3]; 1469a30f8f8cSSatish Balay info->mallocs = irecv[4]; 147098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1471a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1472a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1473a30f8f8cSSatish Balay info->factor_mallocs = 0; 14743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1475a30f8f8cSSatish Balay } 1476a30f8f8cSSatish Balay 147766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1478d71ae5a4SJacob Faibussowitsch { 1479a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1480d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1481a30f8f8cSSatish Balay 1482a30f8f8cSSatish Balay PetscFunctionBegin; 1483e98b92d7SKris Buschelman switch (op) { 1484512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1485e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 148628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1487a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1488c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1489e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 149043674050SBarry Smith MatCheckPreallocated(A, 1); 14919566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14929566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1493e98b92d7SKris Buschelman break; 1494e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 149543674050SBarry Smith MatCheckPreallocated(A, 1); 14964e0d8c25SBarry Smith a->roworiented = flg; 149726fbe8dcSKarl Rupp 14989566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14999566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1500e98b92d7SKris Buschelman break; 15018c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1502d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1503d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1504d71ae5a4SJacob Faibussowitsch break; 1505d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1506d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1507d71ae5a4SJacob Faibussowitsch break; 1508d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1509d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1510d71ae5a4SJacob Faibussowitsch break; 1511d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1512d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1513d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15140f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1515eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1516547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1517eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1518eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1519eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1520b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1521eb1ec7c1SStefano Zampini } 15220f2140c7SStefano Zampini #endif 1523eeffb40dSHong Zhang break; 1524ffa07934SHong Zhang case MAT_SPD: 1525d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1526d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1527d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1528eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1529eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1530eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1531eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1532eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1533eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1534eb1ec7c1SStefano Zampini } 1535eb1ec7c1SStefano Zampini #endif 1536eeffb40dSHong Zhang break; 153777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 153843674050SBarry Smith MatCheckPreallocated(A, 1); 15399566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1540eeffb40dSHong Zhang break; 15419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1542b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15435f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15449566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 154577e54ba9SKris Buschelman break; 1546d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1547d71ae5a4SJacob Faibussowitsch break; 1548d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1549d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1550d71ae5a4SJacob Faibussowitsch break; 1551d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1552d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1553d71ae5a4SJacob Faibussowitsch break; 1554d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1555d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1556d71ae5a4SJacob Faibussowitsch break; 1557d71ae5a4SJacob Faibussowitsch default: 1558d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1559a30f8f8cSSatish Balay } 15603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1561a30f8f8cSSatish Balay } 1562a30f8f8cSSatish Balay 156366976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1564d71ae5a4SJacob Faibussowitsch { 1565a30f8f8cSSatish Balay PetscFunctionBegin; 15667fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1567cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15689566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1569cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15709566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1571fc4dec0aSBarry Smith } 15723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1573a30f8f8cSSatish Balay } 1574a30f8f8cSSatish Balay 157566976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1576d71ae5a4SJacob Faibussowitsch { 1577a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1578a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15795e90f9d9SHong Zhang PetscInt nv, m, n; 1580ace3abfcSBarry Smith PetscBool flg; 1581a30f8f8cSSatish Balay 1582a30f8f8cSSatish Balay PetscFunctionBegin; 1583a30f8f8cSSatish Balay if (ll != rr) { 15849566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 15855f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1586a30f8f8cSSatish Balay } 15873ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1588b3bf805bSHong Zhang 15899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15905f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1591b3bf805bSHong Zhang 15929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 15935f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 15945e90f9d9SHong Zhang 15959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 15965e90f9d9SHong Zhang 15975e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1598dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15995e90f9d9SHong Zhang 16005e90f9d9SHong Zhang /* scale the diagonal part */ 1601dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1602a30f8f8cSSatish Balay 16035e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1605dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1607a30f8f8cSSatish Balay } 1608a30f8f8cSSatish Balay 160966976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1610d71ae5a4SJacob Faibussowitsch { 1611f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1612a30f8f8cSSatish Balay 1613a30f8f8cSSatish Balay PetscFunctionBegin; 16149566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1616a30f8f8cSSatish Balay } 1617a30f8f8cSSatish Balay 16186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1619a30f8f8cSSatish Balay 162066976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1621d71ae5a4SJacob Faibussowitsch { 1622a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1623a30f8f8cSSatish Balay Mat a, b, c, d; 1624ace3abfcSBarry Smith PetscBool flg; 1625a30f8f8cSSatish Balay 1626a30f8f8cSSatish Balay PetscFunctionBegin; 16279371c9d4SSatish Balay a = matA->A; 16289371c9d4SSatish Balay b = matA->B; 16299371c9d4SSatish Balay c = matB->A; 16309371c9d4SSatish Balay d = matB->B; 1631a30f8f8cSSatish Balay 16329566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 163348a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16341c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1636a30f8f8cSSatish Balay } 1637a30f8f8cSSatish Balay 163866976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1639d71ae5a4SJacob Faibussowitsch { 16404c7a3774SStefano Zampini PetscBool isbaij; 16413c896bc6SHong Zhang 16423c896bc6SHong Zhang PetscFunctionBegin; 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16445f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16453c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16463c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16479566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16489566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16499566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16503c896bc6SHong Zhang } else { 16514c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16524c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16534c7a3774SStefano Zampini 16549566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16559566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16563c896bc6SHong Zhang } 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16593c896bc6SHong Zhang } 16603c896bc6SHong Zhang 166166976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1662d71ae5a4SJacob Faibussowitsch { 16634fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16644fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16654fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16664fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16674fe895cdSHong Zhang 16684fe895cdSHong Zhang PetscFunctionBegin; 16694fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16704fe895cdSHong Zhang PetscScalar alpha = a; 16714fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16724fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16739566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1674792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16754fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16764fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16779566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1678792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1680ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16829566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16839566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16844fe895cdSHong Zhang } else { 16854de5dceeSHong Zhang Mat B; 16864de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16875f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16889566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16899566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 16929566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 16939566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 16949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 16959566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 16969566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 16979566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 16989566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 16999566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17009566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17019566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17029566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17039566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17049566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17059566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17064fe895cdSHong Zhang } 17073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17084fe895cdSHong Zhang } 17094fe895cdSHong Zhang 171066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1711d71ae5a4SJacob Faibussowitsch { 17121302d50aSBarry Smith PetscInt i; 1713afebec48SHong Zhang PetscBool flg; 1714a5e6ed63SBarry Smith 17156849ba73SBarry Smith PetscFunctionBegin; 17169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1717a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17189566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 171948a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17204dcd73b1SHong Zhang } 17213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1722a5e6ed63SBarry Smith } 1723a5e6ed63SBarry Smith 172466976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1725d71ae5a4SJacob Faibussowitsch { 17267d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17276f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17287d68702bSBarry Smith 17297d68702bSBarry Smith PetscFunctionBegin; 17306f33a894SBarry Smith if (!Y->preallocated) { 17319566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17326f33a894SBarry Smith } else if (!aij->nz) { 1733b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17349566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1735b83222d8SBarry Smith aij->nonew = nonew; 17367d68702bSBarry Smith } 17379566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17397d68702bSBarry Smith } 17407d68702bSBarry Smith 174166976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1742d71ae5a4SJacob Faibussowitsch { 17433b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17443b49f96aSBarry Smith 17453b49f96aSBarry Smith PetscFunctionBegin; 17465f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17479566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17483b49f96aSBarry Smith if (d) { 17493b49f96aSBarry Smith PetscInt rstart; 17509566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17513b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17523b49f96aSBarry Smith } 17533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17543b49f96aSBarry Smith } 17553b49f96aSBarry Smith 175666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1757d71ae5a4SJacob Faibussowitsch { 1758a5b7ff6bSBarry Smith PetscFunctionBegin; 1759a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1761a5b7ff6bSBarry Smith } 17623b49f96aSBarry Smith 176317ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 176417ea310bSPierre Jolivet { 176517ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 176617ea310bSPierre Jolivet 176717ea310bSPierre Jolivet PetscFunctionBegin; 176817ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 176917ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 177017ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 177117ea310bSPierre Jolivet } 177217ea310bSPierre Jolivet 17733964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1774a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1775a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1776a9d4b620SHong Zhang MatMult_MPISBAIJ, 177797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1778431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1779431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1780f4259b30SLisandro Dalcin NULL, 1781f4259b30SLisandro Dalcin NULL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin /* 10*/ NULL, 1784f4259b30SLisandro Dalcin NULL, 1785f4259b30SLisandro Dalcin NULL, 178641f059aeSBarry Smith MatSOR_MPISBAIJ, 1787a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 178897304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1789a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1790a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1791a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1792a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 179397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1794a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1795a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1796a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1797f4259b30SLisandro Dalcin /* 24*/ NULL, 1798f4259b30SLisandro Dalcin NULL, 1799f4259b30SLisandro Dalcin NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 180226cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin NULL, 1805a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1806f4259b30SLisandro Dalcin NULL, 1807d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18137dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1814d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1815a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18163c896bc6SHong Zhang MatCopy_MPISBAIJ, 1817f4259b30SLisandro Dalcin /* 44*/ NULL, 1818a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18197d68702bSBarry Smith MatShift_MPISBAIJ, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin /* 49*/ NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin /* 54*/ NULL, 1828f4259b30SLisandro Dalcin NULL, 1829a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1830f4259b30SLisandro Dalcin NULL, 1831a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18327dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin /* 64*/ NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1843f4259b30SLisandro Dalcin NULL, 184428d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin /* 74*/ NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin /* 79*/ NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 18565bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1857f4259b30SLisandro Dalcin /* 84*/ NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin /* 89*/ NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin /* 94*/ NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin /* 99*/ NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin NULL, 18752726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin /*104*/ NULL, 187899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1879d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1880d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 188195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1882f4259b30SLisandro Dalcin /*109*/ NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 18863b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1887f4259b30SLisandro Dalcin /*114*/ NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin /*119*/ NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin /*124*/ NULL, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin /*129*/ NULL, 1903f4259b30SLisandro Dalcin NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin /*134*/ NULL, 1908f4259b30SLisandro Dalcin NULL, 1909f4259b30SLisandro Dalcin NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 191246533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1913f4259b30SLisandro Dalcin NULL, 1914f4259b30SLisandro Dalcin NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 1917d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1918d70f29a3SPierre Jolivet NULL, 1919d70f29a3SPierre Jolivet NULL, 192099a7f59eSMark Adams NULL, 192199a7f59eSMark Adams NULL, 19227fb60732SBarry Smith NULL, 1923dec0b466SHong Zhang /*150*/ NULL, 192417ea310bSPierre Jolivet MatEliminateZeros_MPISBAIJ}; 1925a30f8f8cSSatish Balay 192666976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1927d71ae5a4SJacob Faibussowitsch { 1928476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1929535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19305d2a9ed1SStefano Zampini PetscMPIInt size; 1931a23d5eceSKris Buschelman 1932a23d5eceSKris Buschelman PetscFunctionBegin; 1933ad79cf63SBarry Smith if (B->hash_active) { 1934aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1935ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1936ad79cf63SBarry Smith } 1937ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19419566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19425f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19435f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1944899cda47SBarry Smith 1945d0f46423SBarry Smith mbs = B->rmap->n / bs; 1946d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19475f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1948a23d5eceSKris Buschelman 1949d0f46423SBarry Smith B->rmap->bs = bs; 1950a23d5eceSKris Buschelman b->bs2 = bs * bs; 1951a23d5eceSKris Buschelman b->mbs = mbs; 1952a23d5eceSKris Buschelman b->Mbs = Mbs; 1953de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1954de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1955a23d5eceSKris Buschelman 1956ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1957d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1958d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1959a23d5eceSKris Buschelman 1960d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1961d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1962a23d5eceSKris Buschelman 1963cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1964eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1965cb7b82ddSBarry Smith #else 19669566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1967cb7b82ddSBarry Smith #endif 19689566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19709566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19769566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1977cb7b82ddSBarry Smith 19789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 19799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19809566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19829566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 1983cb7b82ddSBarry Smith 1984ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 19859566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19879566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 1988a23d5eceSKris Buschelman 19899566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19909566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 199126fbe8dcSKarl Rupp 1992526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1993cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1994cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 19953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1996a23d5eceSKris Buschelman } 1997a23d5eceSKris Buschelman 199866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 1999d71ae5a4SJacob Faibussowitsch { 200002106b30SBarry Smith PetscInt m, rstart, cend; 2001f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2002f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2003f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2004bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20053bd0feecSPierre Jolivet PetscBool nooffprocentries; 2006dfb205c3SBarry Smith 2007dfb205c3SBarry Smith PetscFunctionBegin; 20085f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20099566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20139566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2014dfb205c3SBarry Smith m = B->rmap->n / bs; 2015dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2016dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2017dfb205c3SBarry Smith 20185f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20199566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2020dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2021dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20225f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20230cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2024dfb205c3SBarry Smith JJ = jj + ii[i]; 20250cd7f59aSBarry Smith bd = 0; 2026dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20270cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2028dfb205c3SBarry Smith JJ++; 20290cd7f59aSBarry Smith bd++; 2030dfb205c3SBarry Smith } 2031dfb205c3SBarry Smith d = 0; 2032dfb205c3SBarry Smith for (; j < nz; j++) { 2033dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2034dfb205c3SBarry Smith d++; 2035dfb205c3SBarry Smith } 2036dfb205c3SBarry Smith d_nnz[i] = d; 20370cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20380cd7f59aSBarry Smith nz = nz - bd; 20390cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2040dfb205c3SBarry Smith } 20419566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20429566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20439566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2044dfb205c3SBarry Smith 2045dfb205c3SBarry Smith values = (PetscScalar *)V; 204648a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2047dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2048dfb205c3SBarry Smith PetscInt row = i + rstart; 2049dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2050dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2051bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2052dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20539566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2054bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2055bb80cfbbSStefano Zampini PetscInt j; 20560cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20570cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20589566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20590cd7f59aSBarry Smith } 20600cd7f59aSBarry Smith } 2061dfb205c3SBarry Smith } 2062dfb205c3SBarry Smith 20639566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20643bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20653bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 20679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 20683bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20693bd0feecSPierre Jolivet 20709566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 20713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2072dfb205c3SBarry Smith } 2073dfb205c3SBarry Smith 20740bad9183SKris Buschelman /*MC 2075fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2076828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2077828413b8SBarry Smith the matrix is stored. 2078828413b8SBarry Smith 2079828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 208011a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 20810bad9183SKris Buschelman 20822ef1f0ffSBarry Smith Options Database Key: 208311a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 20840bad9183SKris Buschelman 20852ef1f0ffSBarry Smith Level: beginner 20862ef1f0ffSBarry Smith 208711a5261eSBarry Smith Note: 2088476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2089476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2090476417e5SBarry Smith 20911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 20920bad9183SKris Buschelman M*/ 20930bad9183SKris Buschelman 2094d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2095d71ae5a4SJacob Faibussowitsch { 2096b5df2d14SHong Zhang Mat_MPISBAIJ *b; 209794ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2098b5df2d14SHong Zhang 2099b5df2d14SHong Zhang PetscFunctionBegin; 21004dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2101b0a32e0cSBarry Smith B->data = (void *)b; 2102aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2103b5df2d14SHong Zhang 2104b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2105b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2106b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2107b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 210826fbe8dcSKarl Rupp 21099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2111b5df2d14SHong Zhang 2112b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2114b5df2d14SHong Zhang 2115b5df2d14SHong Zhang /* build cache for off array entries formed */ 21169566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 211726fbe8dcSKarl Rupp 2118b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21190298fd71SBarry Smith b->colmap = NULL; 21200298fd71SBarry Smith b->garray = NULL; 2121b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2122b5df2d14SHong Zhang 2123b5df2d14SHong Zhang /* stuff used in block assembly */ 2124f4259b30SLisandro Dalcin b->barray = NULL; 2125b5df2d14SHong Zhang 2126b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2127f4259b30SLisandro Dalcin b->lvec = NULL; 2128f4259b30SLisandro Dalcin b->Mvctx = NULL; 2129f4259b30SLisandro Dalcin b->slvec0 = NULL; 2130f4259b30SLisandro Dalcin b->slvec0b = NULL; 2131f4259b30SLisandro Dalcin b->slvec1 = NULL; 2132f4259b30SLisandro Dalcin b->slvec1a = NULL; 2133f4259b30SLisandro Dalcin b->slvec1b = NULL; 2134f4259b30SLisandro Dalcin b->sMvctx = NULL; 2135b5df2d14SHong Zhang 2136b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2137f4259b30SLisandro Dalcin b->rowindices = NULL; 2138f4259b30SLisandro Dalcin b->rowvalues = NULL; 2139b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2140b5df2d14SHong Zhang 2141b5df2d14SHong Zhang /* hash table stuff */ 2142f4259b30SLisandro Dalcin b->ht = NULL; 2143f4259b30SLisandro Dalcin b->hd = NULL; 2144b5df2d14SHong Zhang b->ht_size = 0; 2145b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2146b5df2d14SHong Zhang b->ht_fact = 0; 2147b5df2d14SHong Zhang b->ht_total_ct = 0; 2148b5df2d14SHong Zhang b->ht_insert_ct = 0; 2149b5df2d14SHong Zhang 21507dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21517a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21527a868f3eSHong Zhang 2153f4259b30SLisandro Dalcin b->in_loc = NULL; 2154f4259b30SLisandro Dalcin b->v_loc = NULL; 215559ffdab8SBarry Smith b->n_loc = 0; 215694ae4db5SBarry Smith 21579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21616214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 21636214f412SHong Zhang #endif 2164d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 21659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2166d24d4204SJose E. Roman #endif 21679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 21689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2169aa5a9175SDahai Guo 2170b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2171b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2172b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2173b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2174eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2175b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2176eb1ec7c1SStefano Zampini #else 2177b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2178eb1ec7c1SStefano Zampini #endif 217913647f61SHong Zhang 21809566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2181d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21829566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 218394ae4db5SBarry Smith if (flg) { 218494ae4db5SBarry Smith PetscReal fact = 1.39; 21859566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21869566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 218794ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21889566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21899566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 219094ae4db5SBarry Smith } 2191d0609cedSBarry Smith PetscOptionsEnd(); 21923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2193b5df2d14SHong Zhang } 2194b5df2d14SHong Zhang 21952920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2196209238afSKris Buschelman /*MC 2197002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2198209238afSKris Buschelman 219911a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 220011a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2201209238afSKris Buschelman 220211a5261eSBarry Smith Options Database Key: 2203c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2204209238afSKris Buschelman 2205209238afSKris Buschelman Level: beginner 2206209238afSKris Buschelman 22071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2208209238afSKris Buschelman M*/ 2209209238afSKris Buschelman 2210b5df2d14SHong Zhang /*@C 2211b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2212b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2213b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2214b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2215b5df2d14SHong Zhang 2216c3339decSBarry Smith Collective 2217b5df2d14SHong Zhang 2218b5df2d14SHong Zhang Input Parameters: 22191c4f3114SJed Brown + B - the matrix 2220bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2221bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2222b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2223b5df2d14SHong Zhang submatrix (same for all local rows) 2224b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22256d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22262ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 222795742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2228b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2229b5df2d14SHong Zhang submatrix (same for all local rows). 2230b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2231c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22322ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2233b5df2d14SHong Zhang 2234b5df2d14SHong Zhang Options Database Keys: 2235a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2236b5df2d14SHong Zhang block calculations (much slower) 2237a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2238b5df2d14SHong Zhang 22392ef1f0ffSBarry Smith Level: intermediate 22402ef1f0ffSBarry Smith 2241b5df2d14SHong Zhang Notes: 2242b5df2d14SHong Zhang 224311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2244b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2245b5df2d14SHong Zhang 224649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 224749a6f317SBarry Smith 2248b5df2d14SHong Zhang Storage Information: 2249b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2250b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2251b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2252b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2253b5df2d14SHong Zhang 2254b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22552ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22562ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2257b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22582ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2259b5df2d14SHong Zhang 226011a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2261aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22622ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2263aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2264aa95bbe8SBarry Smith 2265b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2266b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2267b5df2d14SHong Zhang 2268b5df2d14SHong Zhang .vb 2269b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2270a4b1a0f6SJed Brown -------------------------- 2271c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2272c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2273c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2274a4b1a0f6SJed Brown -------------------------- 2275b5df2d14SHong Zhang .ve 2276b5df2d14SHong Zhang 2277b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2278b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22796d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 228011a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2281b5df2d14SHong Zhang 22822ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 22836d10fdaeSSatish Balay plus the diagonal part of the d matrix, 22842ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2285c2fc9fa9SBarry Smith 2286b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 22872ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2288b5df2d14SHong Zhang 22891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2290b5df2d14SHong Zhang @*/ 2291d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2292d71ae5a4SJacob Faibussowitsch { 2293b5df2d14SHong Zhang PetscFunctionBegin; 22946ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 22956ba663aaSJed Brown PetscValidType(B, 1); 22966ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2297cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 22983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2299b5df2d14SHong Zhang } 2300b5df2d14SHong Zhang 23012920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2302a30f8f8cSSatish Balay /*@C 230311a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2304a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2305a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 230620f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2307a30f8f8cSSatish Balay 2308d083f849SBarry Smith Collective 2309a30f8f8cSSatish Balay 2310a30f8f8cSSatish Balay Input Parameters: 2311a30f8f8cSSatish Balay + comm - MPI communicator 231211a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 231320f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 231420f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2315a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2316a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 231720f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2318a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2319a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 232020f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 232120f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2322a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2323a30f8f8cSSatish Balay submatrix (same for all local rows) 2324a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23256d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23262ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 232795742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 232895742e49SBarry Smith set its value even if it is zero. 2329a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2330a30f8f8cSSatish Balay submatrix (same for all local rows). 2331a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2332a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23332ef1f0ffSBarry Smith each block row) or `NULL`. 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay Output Parameter: 2336a30f8f8cSSatish Balay . A - the matrix 2337a30f8f8cSSatish Balay 2338a30f8f8cSSatish Balay Options Database Keys: 2339a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2340a30f8f8cSSatish Balay block calculations (much slower) 2341a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2342a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2343a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2344a30f8f8cSSatish Balay 23452ef1f0ffSBarry Smith Level: intermediate 23462ef1f0ffSBarry Smith 23472ef1f0ffSBarry Smith Notes: 234877433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2349f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 235011a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2351175b88e8SBarry Smith 2352d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23536d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2354d1be2dadSMatthew Knepley 2355a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2356a30f8f8cSSatish Balay (possibly both). 2357a30f8f8cSSatish Balay 235811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2359a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2360a30f8f8cSSatish Balay 236149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 236249a6f317SBarry Smith 2363a30f8f8cSSatish Balay Storage Information: 2364a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2365a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2366a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2367a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2368a30f8f8cSSatish Balay 2369a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 23702ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 23712ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2372a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 23732ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2376a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2377a30f8f8cSSatish Balay 2378a30f8f8cSSatish Balay .vb 2379a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2380a4b1a0f6SJed Brown -------------------------- 2381c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2382c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2383c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2384a4b1a0f6SJed Brown -------------------------- 2385a30f8f8cSSatish Balay .ve 2386a30f8f8cSSatish Balay 2387a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2388a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23896d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23902ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2391a30f8f8cSSatish Balay 23922ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23936d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23942ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2395a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 23962ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2397a30f8f8cSSatish Balay 23981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2399a30f8f8cSSatish Balay @*/ 2400d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2401d71ae5a4SJacob Faibussowitsch { 24021302d50aSBarry Smith PetscMPIInt size; 2403a30f8f8cSSatish Balay 2404a30f8f8cSSatish Balay PetscFunctionBegin; 24059566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2408273d9f13SBarry Smith if (size > 1) { 24099566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24109566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2411273d9f13SBarry Smith } else { 24129566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24139566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2414273d9f13SBarry Smith } 24153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2416a30f8f8cSSatish Balay } 2417a30f8f8cSSatish Balay 2418d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2419d71ae5a4SJacob Faibussowitsch { 2420a30f8f8cSSatish Balay Mat mat; 2421a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2422d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2423387bc808SHong Zhang PetscScalar *array; 2424a30f8f8cSSatish Balay 2425a30f8f8cSSatish Balay PetscFunctionBegin; 2426f4259b30SLisandro Dalcin *newmat = NULL; 242726fbe8dcSKarl Rupp 24289566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24309566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24319566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24329566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2433e1b6402fSHong Zhang 2434d5f3da31SBarry Smith mat->factortype = matin->factortype; 2435273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 243682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24377fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24387fff6886SHong Zhang 2439b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2440a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2441a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2442a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2443a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2444a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2445a30f8f8cSSatish Balay 2446a30f8f8cSSatish Balay a->size = oldmat->size; 2447a30f8f8cSSatish Balay a->rank = oldmat->rank; 2448a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2449a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2450f4259b30SLisandro Dalcin a->rowindices = NULL; 2451f4259b30SLisandro Dalcin a->rowvalues = NULL; 2452a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2453f4259b30SLisandro Dalcin a->barray = NULL; 2454899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2455899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2456899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2457899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2458a30f8f8cSSatish Balay 2459a30f8f8cSSatish Balay /* hash table stuff */ 2460f4259b30SLisandro Dalcin a->ht = NULL; 2461f4259b30SLisandro Dalcin a->hd = NULL; 2462a30f8f8cSSatish Balay a->ht_size = 0; 2463a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2464a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2465a30f8f8cSSatish Balay a->ht_total_ct = 0; 2466a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2467a30f8f8cSSatish Balay 24689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2469a30f8f8cSSatish Balay if (oldmat->colmap) { 2470a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2471eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2472a30f8f8cSSatish Balay #else 24739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 24749566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2475a30f8f8cSSatish Balay #endif 2476f4259b30SLisandro Dalcin } else a->colmap = NULL; 2477387bc808SHong Zhang 2478a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 24799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2481f4259b30SLisandro Dalcin } else a->garray = NULL; 2482a30f8f8cSSatish Balay 24839566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24849566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 24859566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 248682327fa8SHong Zhang 24879566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 24889566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2489387bc808SHong Zhang 24909566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 24919566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 24929566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 24939566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 24949566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 24959566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 24969566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 24979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2498387bc808SHong Zhang 2499387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25009566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2501387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 250282327fa8SHong Zhang 25039566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25049566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 25059566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2506a30f8f8cSSatish Balay *newmat = mat; 25073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2508a30f8f8cSSatish Balay } 2509a30f8f8cSSatish Balay 2510618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2511618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2512618cc2edSLisandro Dalcin 2513d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2514d71ae5a4SJacob Faibussowitsch { 25157f489da9SVaclav Hapla PetscBool isbinary; 251695936485SShri Abhyankar 251795936485SShri Abhyankar PetscFunctionBegin; 25189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25195f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25209566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 252295936485SShri Abhyankar } 252395936485SShri Abhyankar 2524d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2525d71ae5a4SJacob Faibussowitsch { 252624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2527f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(a->B)->data; 2528ca54ac64SHong Zhang PetscReal atmp; 252987828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25301302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25311302d50aSBarry Smith PetscMPIInt rank, size; 25321302d50aSBarry Smith PetscInt *rowners_bs, dest, count, source; 253387828ca2SBarry Smith PetscScalar *va; 25348a1c53f2SBarry Smith MatScalar *ba; 2535f4c0e9e4SHong Zhang MPI_Status stat; 253624d5174aSHong Zhang 253724d5174aSHong Zhang PetscFunctionBegin; 25385f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25399566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25409566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2541f4c0e9e4SHong Zhang 25429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2544f4c0e9e4SHong Zhang 2545d0f46423SBarry Smith bs = A->rmap->bs; 2546f4c0e9e4SHong Zhang mbs = a->mbs; 2547f4c0e9e4SHong Zhang Mbs = a->Mbs; 2548f4c0e9e4SHong Zhang ba = b->a; 2549f4c0e9e4SHong Zhang bi = b->i; 2550f4c0e9e4SHong Zhang bj = b->j; 2551f4c0e9e4SHong Zhang 2552f4c0e9e4SHong Zhang /* find ownerships */ 2553d0f46423SBarry Smith rowners_bs = A->rmap->range; 2554f4c0e9e4SHong Zhang 2555f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2557f4c0e9e4SHong Zhang 2558f4c0e9e4SHong Zhang /* row_max for B */ 2559b8475685SHong Zhang if (rank != size - 1) { 2560f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25619371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25629371c9d4SSatish Balay bi++; 2563f4c0e9e4SHong Zhang brow = bs * i; 2564f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2565f4c0e9e4SHong Zhang bcol = bs * (*bj); 2566f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2567ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 256804d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2569f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 25709371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 25719371c9d4SSatish Balay ba++; 2572ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2573ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2574f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2575f4c0e9e4SHong Zhang } 2576f4c0e9e4SHong Zhang } 2577f4c0e9e4SHong Zhang bj++; 2578f4c0e9e4SHong Zhang } 2579f4c0e9e4SHong Zhang } 2580f4c0e9e4SHong Zhang 2581f4c0e9e4SHong Zhang /* send values to its owners */ 2582f4c0e9e4SHong Zhang for (dest = rank + 1; dest < size; dest++) { 2583f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2584ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 25859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2586ca54ac64SHong Zhang } 2587f4c0e9e4SHong Zhang } 2588f4c0e9e4SHong Zhang 2589f4c0e9e4SHong Zhang /* receive values */ 2590ca54ac64SHong Zhang if (rank) { 2591f4c0e9e4SHong Zhang rvalues = work; 2592ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2593f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 25949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2595f4c0e9e4SHong Zhang /* process values */ 2596f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2597ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2598f4c0e9e4SHong Zhang } 2599f4c0e9e4SHong Zhang } 2600ca54ac64SHong Zhang } 2601f4c0e9e4SHong Zhang 26029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26039566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260524d5174aSHong Zhang } 26062798e883SHong Zhang 2607d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2608d71ae5a4SJacob Faibussowitsch { 26092798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2610d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26113649974fSBarry Smith PetscScalar *x, *ptr, *from; 2612ffe4fb16SHong Zhang Vec bb1; 26133649974fSBarry Smith const PetscScalar *b; 2614ffe4fb16SHong Zhang 2615ffe4fb16SHong Zhang PetscFunctionBegin; 26165f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26175f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2618ffe4fb16SHong Zhang 2619a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2622a2b30743SBarry Smith } 2623a2b30743SBarry Smith 2624ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2625ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2627ffe4fb16SHong Zhang its--; 2628ffe4fb16SHong Zhang } 2629ffe4fb16SHong Zhang 26309566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2631ffe4fb16SHong Zhang while (its--) { 2632ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26339566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2634ffe4fb16SHong Zhang 2635ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26369566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26379566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2640ffe4fb16SHong Zhang 26419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2642ffe4fb16SHong Zhang 2643ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26449566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2648ffe4fb16SHong Zhang 2649ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2650629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2651629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2652ffe4fb16SHong Zhang 26539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2657ffe4fb16SHong Zhang 2658ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26599566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2660ffe4fb16SHong Zhang 2661ffe4fb16SHong Zhang /* local diagonal sweep */ 26629566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2663ffe4fb16SHong Zhang } 26649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2665fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2667fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26689566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2669fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2670fa22f6d0SBarry Smith Vec xx1; 2671ace3abfcSBarry Smith PetscBool hasop; 267220f1ed55SBarry Smith const PetscScalar *diag; 2673887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 267420f1ed55SBarry Smith PetscInt i, n; 2675fa22f6d0SBarry Smith 2676fa22f6d0SBarry Smith if (!mat->xx1) { 26779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 26789566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2679fa22f6d0SBarry Smith } 2680fa22f6d0SBarry Smith xx1 = mat->xx1; 2681fa22f6d0SBarry Smith bb1 = mat->bb1; 2682fa22f6d0SBarry Smith 26839566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2684fa22f6d0SBarry Smith 2685fa22f6d0SBarry Smith if (!mat->diag) { 2686effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26879566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 26889566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2689fa22f6d0SBarry Smith } 26909566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2691fa22f6d0SBarry Smith 2692fa22f6d0SBarry Smith if (hasop) { 26939566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 26949566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 269520f1ed55SBarry Smith } else { 269620f1ed55SBarry Smith /* 269720f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 26989566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 26999566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 270020f1ed55SBarry Smith */ 27019566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27049566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27059566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2706887ee2caSBarry Smith if (omega == 1.0) { 270726fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27089566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2709887ee2caSBarry Smith } else { 271026fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27119566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2712887ee2caSBarry Smith } 27139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 271720f1ed55SBarry Smith } 2718fa22f6d0SBarry Smith 2719fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2720629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2721629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27229566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27239566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27249566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27269566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27309566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2731fa22f6d0SBarry Smith 2732fa22f6d0SBarry Smith /* local sweep */ 27339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27349566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2735f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2737ffe4fb16SHong Zhang } 2738ffe4fb16SHong Zhang 2739dfb205c3SBarry Smith /*@ 274011a5261eSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard 2741dfb205c3SBarry Smith CSR format the local rows. 2742dfb205c3SBarry Smith 2743d083f849SBarry Smith Collective 2744dfb205c3SBarry Smith 2745dfb205c3SBarry Smith Input Parameters: 2746dfb205c3SBarry Smith + comm - MPI communicator 2747dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 274811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2749dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 275011a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 27512ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27522ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27532ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2754483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2755dfb205c3SBarry Smith . j - column indices 2756dfb205c3SBarry Smith - a - matrix values 2757dfb205c3SBarry Smith 2758dfb205c3SBarry Smith Output Parameter: 2759dfb205c3SBarry Smith . mat - the matrix 2760dfb205c3SBarry Smith 2761dfb205c3SBarry Smith Level: intermediate 2762dfb205c3SBarry Smith 2763dfb205c3SBarry Smith Notes: 27642ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 27652ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 27662ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2767dfb205c3SBarry Smith 27682ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2769dfb205c3SBarry Smith 27701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2771*7d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 2772dfb205c3SBarry Smith @*/ 2773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2774d71ae5a4SJacob Faibussowitsch { 2775dfb205c3SBarry Smith PetscFunctionBegin; 27765f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 27775f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27789566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 27799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 27809566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 27819566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 27823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2783dfb205c3SBarry Smith } 2784dfb205c3SBarry Smith 2785dfb205c3SBarry Smith /*@C 278611a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2787dfb205c3SBarry Smith 2788d083f849SBarry Smith Collective 2789dfb205c3SBarry Smith 2790dfb205c3SBarry Smith Input Parameters: 27911c4f3114SJed Brown + B - the matrix 2792dfb205c3SBarry Smith . bs - the block size 27932ef1f0ffSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2794dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2795dfb205c3SBarry Smith - v - optional values in the matrix 2796dfb205c3SBarry Smith 2797664954b6SBarry Smith Level: advanced 2798664954b6SBarry Smith 2799664954b6SBarry Smith Notes: 28000cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28010cd7f59aSBarry Smith and usually the numerical values as well 28020cd7f59aSBarry Smith 280350c5228eSBarry Smith Any entries below the diagonal are ignored 2804dfb205c3SBarry Smith 2805*7d2c085eSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ` 2806dfb205c3SBarry Smith @*/ 2807d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2808d71ae5a4SJacob Faibussowitsch { 2809dfb205c3SBarry Smith PetscFunctionBegin; 2810cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2812dfb205c3SBarry Smith } 2813dfb205c3SBarry Smith 2814d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2815d71ae5a4SJacob Faibussowitsch { 281610c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 281710c56fdeSHong Zhang PetscInt *indx; 281810c56fdeSHong Zhang PetscScalar *values; 2819dfb205c3SBarry Smith 28204dcd73b1SHong Zhang PetscFunctionBegin; 28219566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 282210c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 282310c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2824de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 282510c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2826de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28274dcd73b1SHong Zhang 28289566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28299371c9d4SSatish Balay mbs = m / bs; 28309371c9d4SSatish Balay Nbs = N / cbs; 283148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2832da91a574SPierre Jolivet nbs = n / cbs; 28334dcd73b1SHong Zhang 28349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2835d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2836de25e9cbSPierre Jolivet 28379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2839de25e9cbSPierre Jolivet if (rank == size - 1) { 2840de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28415f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2842de25e9cbSPierre Jolivet } 2843de25e9cbSPierre Jolivet 2844d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28459566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 284610c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28479566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28484dcd73b1SHong Zhang nnz = nnz / bs; 28494dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28509566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28519566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28524dcd73b1SHong Zhang } 28539566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28549566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28554dcd73b1SHong Zhang 28569566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28589566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28599566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28609566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28619566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2862d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 28634dcd73b1SHong Zhang } 28644dcd73b1SHong Zhang 286510c56fdeSHong Zhang /* numeric phase */ 28669566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 28684dcd73b1SHong Zhang 28699566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 28704dcd73b1SHong Zhang for (i = 0; i < m; i++) { 28719566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28724dcd73b1SHong Zhang Ii = i + rstart; 28739566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 28749566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28754dcd73b1SHong Zhang } 28769566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 28789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 28793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28804dcd73b1SHong Zhang } 2881