1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 86214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 127087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 13a30f8f8cSSatish Balay { 14f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 15dfbe8321SBarry Smith PetscErrorCode ierr; 16a30f8f8cSSatish Balay 17a30f8f8cSSatish Balay PetscFunctionBegin; 18a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 19a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 20a30f8f8cSSatish Balay PetscFunctionReturn(0); 21a30f8f8cSSatish Balay } 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 36d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 37a30f8f8cSSatish Balay { \ 38a30f8f8cSSatish Balay \ 39a30f8f8cSSatish Balay brow = row/bs; \ 40a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 41a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 42a30f8f8cSSatish Balay bcol = col/bs; \ 43a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 44a30f8f8cSSatish Balay low = 0; high = nrow; \ 45a30f8f8cSSatish Balay while (high-low > 3) { \ 46a30f8f8cSSatish Balay t = (low+high)/2; \ 47a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 48a30f8f8cSSatish Balay else low = t; \ 49a30f8f8cSSatish Balay } \ 50a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 51a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 52a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 53a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 54a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 55a30f8f8cSSatish Balay else *bap = value; \ 56a30f8f8cSSatish Balay goto a_noinsert; \ 57a30f8f8cSSatish Balay } \ 58a30f8f8cSSatish Balay } \ 59a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 60d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 61fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 62a30f8f8cSSatish Balay N = nrow++ - 1; \ 63a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 64a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 65a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 66a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 67a30f8f8cSSatish Balay } \ 68a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 69a30f8f8cSSatish Balay rp[_i] = bcol; \ 70a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 71e56f5c9eSBarry Smith A->nonzerostate++;\ 72a30f8f8cSSatish Balay a_noinsert:; \ 73a30f8f8cSSatish Balay ailen[brow] = nrow; \ 74a30f8f8cSSatish Balay } 75e5e170daSBarry Smith 76d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 77a30f8f8cSSatish Balay { \ 78a30f8f8cSSatish Balay brow = row/bs; \ 79a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 80a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 81a30f8f8cSSatish Balay bcol = col/bs; \ 82a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 83a30f8f8cSSatish Balay low = 0; high = nrow; \ 84a30f8f8cSSatish Balay while (high-low > 3) { \ 85a30f8f8cSSatish Balay t = (low+high)/2; \ 86a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 87a30f8f8cSSatish Balay else low = t; \ 88a30f8f8cSSatish Balay } \ 89a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 90a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 91a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 92a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 93a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 94a30f8f8cSSatish Balay else *bap = value; \ 95a30f8f8cSSatish Balay goto b_noinsert; \ 96a30f8f8cSSatish Balay } \ 97a30f8f8cSSatish Balay } \ 98a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 99d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 100fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 101a30f8f8cSSatish Balay N = nrow++ - 1; \ 102a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 103a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 104a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 105a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 108a30f8f8cSSatish Balay rp[_i] = bcol; \ 109a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110e56f5c9eSBarry Smith B->nonzerostate++;\ 111a30f8f8cSSatish Balay b_noinsert:; \ 112a30f8f8cSSatish Balay bilen[brow] = nrow; \ 113a30f8f8cSSatish Balay } 114a30f8f8cSSatish Balay 115a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 116a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 117a30f8f8cSSatish Balay */ 1184a2ae208SSatish Balay #undef __FUNCT__ 119dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 120dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 121a30f8f8cSSatish Balay { 122a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 123a30f8f8cSSatish Balay MatScalar value; 124ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 125dfbe8321SBarry Smith PetscErrorCode ierr; 1261302d50aSBarry Smith PetscInt i,j,row,col; 127d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 128d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 129d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Some Variables required in the macro */ 132a30f8f8cSSatish Balay Mat A = baij->A; 133a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1341302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 135a30f8f8cSSatish Balay MatScalar *aa =a->a; 136a30f8f8cSSatish Balay 137a30f8f8cSSatish Balay Mat B = baij->B; 138a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1391302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 140a30f8f8cSSatish Balay MatScalar *ba =b->a; 141a30f8f8cSSatish Balay 1421302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1431302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 144a30f8f8cSSatish Balay MatScalar *ap,*bap; 145a30f8f8cSSatish Balay 146a30f8f8cSSatish Balay /* for stash */ 1470298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1480298fd71SBarry Smith MatScalar *v_loc = NULL; 149a30f8f8cSSatish Balay 150a30f8f8cSSatish Balay PetscFunctionBegin; 151a30f8f8cSSatish Balay if (!baij->donotstash) { 15259ffdab8SBarry Smith if (n > baij->n_loc) { 15359ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 15459ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 155785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 156785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 15726fbe8dcSKarl Rupp 15859ffdab8SBarry Smith baij->n_loc = n; 15959ffdab8SBarry Smith } 16059ffdab8SBarry Smith in_loc = baij->in_loc; 16159ffdab8SBarry Smith v_loc = baij->v_loc; 162a30f8f8cSSatish Balay } 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay for (i=0; i<m; i++) { 165a30f8f8cSSatish Balay if (im[i] < 0) continue; 1662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 167e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 168a30f8f8cSSatish Balay #endif 169a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 170a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 171a30f8f8cSSatish Balay for (j=0; j<n; j++) { 17201b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 17301b2bd88SHong Zhang if (a->ignore_ltriangular) { 17401b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 17526fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 17601b2bd88SHong Zhang } 177a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 178a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 179a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 180a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 181db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 182db4deed7SKarl Rupp else value = v[i+j*m]; 183d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 184a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 185a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 187cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 188a30f8f8cSSatish Balay #endif 189a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 190a30f8f8cSSatish Balay if (mat->was_assembled) { 191a30f8f8cSSatish Balay if (!baij->colmap) { 192ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 193a30f8f8cSSatish Balay } 194a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 195a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 19671730473SSatish Balay col = col - 1; 197a30f8f8cSSatish Balay #else 19871730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 199a30f8f8cSSatish Balay #endif 200a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 201ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 202a30f8f8cSSatish Balay col = in[j]; 203a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 204a30f8f8cSSatish Balay B = baij->B; 205a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 206a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 207a30f8f8cSSatish Balay ba = b->a; 20871730473SSatish Balay } else col += in[j]%bs; 209a30f8f8cSSatish Balay } else col = in[j]; 210db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 211db4deed7SKarl Rupp else value = v[i+j*m]; 212d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 213a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 214a30f8f8cSSatish Balay } 215a30f8f8cSSatish Balay } 216a30f8f8cSSatish Balay } else { /* off processor entry */ 2174cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 218a30f8f8cSSatish Balay if (!baij->donotstash) { 2195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 220a30f8f8cSSatish Balay n_loc = 0; 221a30f8f8cSSatish Balay for (j=0; j<n; j++) { 222f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 223a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 224a30f8f8cSSatish Balay if (roworiented) { 225a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 226a30f8f8cSSatish Balay } else { 227a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay n_loc++; 230a30f8f8cSSatish Balay } 231b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } 235a30f8f8cSSatish Balay PetscFunctionReturn(0); 236a30f8f8cSSatish Balay } 237a30f8f8cSSatish Balay 2384a2ae208SSatish Balay #undef __FUNCT__ 23936bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ_Inlined" 24036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 24136bd2089SBarry Smith { 24236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 24336bd2089SBarry Smith PetscErrorCode ierr; 24436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 24536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 24636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 24736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 24836bd2089SBarry Smith const PetscScalar *value = v; 24936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 25036bd2089SBarry Smith 25136bd2089SBarry Smith PetscFunctionBegin; 25236bd2089SBarry Smith if (col < row) { 25336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 25436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 25536bd2089SBarry Smith } 25636bd2089SBarry Smith rp = aj + ai[row]; 25736bd2089SBarry Smith ap = aa + bs2*ai[row]; 25836bd2089SBarry Smith rmax = imax[row]; 25936bd2089SBarry Smith nrow = ailen[row]; 26036bd2089SBarry Smith value = v; 26136bd2089SBarry Smith low = 0; 26236bd2089SBarry Smith high = nrow; 26336bd2089SBarry Smith 26436bd2089SBarry Smith while (high-low > 7) { 26536bd2089SBarry Smith t = (low+high)/2; 26636bd2089SBarry Smith if (rp[t] > col) high = t; 26736bd2089SBarry Smith else low = t; 26836bd2089SBarry Smith } 26936bd2089SBarry Smith for (i=low; i<high; i++) { 27036bd2089SBarry Smith if (rp[i] > col) break; 27136bd2089SBarry Smith if (rp[i] == col) { 27236bd2089SBarry Smith bap = ap + bs2*i; 27336bd2089SBarry Smith if (roworiented) { 27436bd2089SBarry Smith if (is == ADD_VALUES) { 27536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 27636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 27736bd2089SBarry Smith bap[jj] += *value++; 27836bd2089SBarry Smith } 27936bd2089SBarry Smith } 28036bd2089SBarry Smith } else { 28136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 28236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 28336bd2089SBarry Smith bap[jj] = *value++; 28436bd2089SBarry Smith } 28536bd2089SBarry Smith } 28636bd2089SBarry Smith } 28736bd2089SBarry Smith } else { 28836bd2089SBarry Smith if (is == ADD_VALUES) { 28936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29136bd2089SBarry Smith *bap++ += *value++; 29236bd2089SBarry Smith } 29336bd2089SBarry Smith } 29436bd2089SBarry Smith } else { 29536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 29636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 29736bd2089SBarry Smith *bap++ = *value++; 29836bd2089SBarry Smith } 29936bd2089SBarry Smith } 30036bd2089SBarry Smith } 30136bd2089SBarry Smith } 30236bd2089SBarry Smith goto noinsert2; 30336bd2089SBarry Smith } 30436bd2089SBarry Smith } 30536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 30636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 30736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 30836bd2089SBarry Smith N = nrow++ - 1; high++; 30936bd2089SBarry Smith /* shift up all the later entries in this row */ 31036bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 31136bd2089SBarry Smith rp[ii+1] = rp[ii]; 31236bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 31336bd2089SBarry Smith } 31436bd2089SBarry Smith if (N >= i) { 31536bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 31636bd2089SBarry Smith } 31736bd2089SBarry Smith rp[i] = col; 31836bd2089SBarry Smith bap = ap + bs2*i; 31936bd2089SBarry Smith if (roworiented) { 32036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32136bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 32236bd2089SBarry Smith bap[jj] = *value++; 32336bd2089SBarry Smith } 32436bd2089SBarry Smith } 32536bd2089SBarry Smith } else { 32636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 32736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 32836bd2089SBarry Smith *bap++ = *value++; 32936bd2089SBarry Smith } 33036bd2089SBarry Smith } 33136bd2089SBarry Smith } 33236bd2089SBarry Smith noinsert2:; 33336bd2089SBarry Smith ailen[row] = nrow; 33436bd2089SBarry Smith PetscFunctionReturn(0); 33536bd2089SBarry Smith } 33636bd2089SBarry Smith 33736bd2089SBarry Smith #undef __FUNCT__ 33836bd2089SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 33936bd2089SBarry Smith /* 34036bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 34136bd2089SBarry Smith */ 34236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34336bd2089SBarry Smith { 34436bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscErrorCode ierr; 34836bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34936bd2089SBarry Smith PetscBool roworiented=a->roworiented; 35036bd2089SBarry Smith const PetscScalar *value = v; 35136bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35236bd2089SBarry Smith 35336bd2089SBarry Smith PetscFunctionBegin; 35436bd2089SBarry Smith rp = aj + ai[row]; 35536bd2089SBarry Smith ap = aa + bs2*ai[row]; 35636bd2089SBarry Smith rmax = imax[row]; 35736bd2089SBarry Smith nrow = ailen[row]; 35836bd2089SBarry Smith low = 0; 35936bd2089SBarry Smith high = nrow; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith while (high-low > 7) { 36236bd2089SBarry Smith t = (low+high)/2; 36336bd2089SBarry Smith if (rp[t] > col) high = t; 36436bd2089SBarry Smith else low = t; 36536bd2089SBarry Smith } 36636bd2089SBarry Smith for (i=low; i<high; i++) { 36736bd2089SBarry Smith if (rp[i] > col) break; 36836bd2089SBarry Smith if (rp[i] == col) { 36936bd2089SBarry Smith bap = ap + bs2*i; 37036bd2089SBarry Smith if (roworiented) { 37136bd2089SBarry Smith if (is == ADD_VALUES) { 37236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37436bd2089SBarry Smith bap[jj] += *value++; 37536bd2089SBarry Smith } 37636bd2089SBarry Smith } 37736bd2089SBarry Smith } else { 37836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38036bd2089SBarry Smith bap[jj] = *value++; 38136bd2089SBarry Smith } 38236bd2089SBarry Smith } 38336bd2089SBarry Smith } 38436bd2089SBarry Smith } else { 38536bd2089SBarry Smith if (is == ADD_VALUES) { 38636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 38736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 38836bd2089SBarry Smith bap[jj] += value[jj]; 38936bd2089SBarry Smith } 39036bd2089SBarry Smith bap += bs; 39136bd2089SBarry Smith } 39236bd2089SBarry Smith } else { 39336bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 39436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39536bd2089SBarry Smith bap[jj] = value[jj]; 39636bd2089SBarry Smith } 39736bd2089SBarry Smith bap += bs; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith goto noinsert2; 40236bd2089SBarry Smith } 40336bd2089SBarry Smith } 40436bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40536bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 40636bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40736bd2089SBarry Smith N = nrow++ - 1; high++; 40836bd2089SBarry Smith /* shift up all the later entries in this row */ 40936bd2089SBarry Smith for (ii=N; ii>=i; ii--) { 41036bd2089SBarry Smith rp[ii+1] = rp[ii]; 41136bd2089SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 41236bd2089SBarry Smith } 41336bd2089SBarry Smith if (N >= i) { 41436bd2089SBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp[i] = col; 41736bd2089SBarry Smith bap = ap + bs2*i; 41836bd2089SBarry Smith if (roworiented) { 41936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42036bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 42136bd2089SBarry Smith bap[jj] = *value++; 42236bd2089SBarry Smith } 42336bd2089SBarry Smith } 42436bd2089SBarry Smith } else { 42536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42736bd2089SBarry Smith *bap++ = *value++; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith } 43036bd2089SBarry Smith } 43136bd2089SBarry Smith noinsert2:; 43236bd2089SBarry Smith ailen[row] = nrow; 43336bd2089SBarry Smith PetscFunctionReturn(0); 43436bd2089SBarry Smith } 43536bd2089SBarry Smith 43636bd2089SBarry Smith #undef __FUNCT__ 437dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 43836bd2089SBarry Smith /* 43936bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 44036bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 44136bd2089SBarry Smith */ 442dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 443a30f8f8cSSatish Balay { 4440880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 445f15d580aSBarry Smith const MatScalar *value; 446f15d580aSBarry Smith MatScalar *barray =baij->barray; 447ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 450899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 451d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 4520880e062SHong Zhang 453a30f8f8cSSatish Balay PetscFunctionBegin; 4540880e062SHong Zhang if (!barray) { 455785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 4560880e062SHong Zhang baij->barray = barray; 4570880e062SHong Zhang } 4580880e062SHong Zhang 4590880e062SHong Zhang if (roworiented) { 4600880e062SHong Zhang stepval = (n-1)*bs; 4610880e062SHong Zhang } else { 4620880e062SHong Zhang stepval = (m-1)*bs; 4630880e062SHong Zhang } 4640880e062SHong Zhang for (i=0; i<m; i++) { 4650880e062SHong Zhang if (im[i] < 0) continue; 4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 467bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 4680880e062SHong Zhang #endif 4690880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4700880e062SHong Zhang row = im[i] - rstart; 4710880e062SHong Zhang for (j=0; j<n; j++) { 472f3f98c53SJed Brown if (im[i] > in[j]) { 473f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 474e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 475f3f98c53SJed Brown } 4760880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4770880e062SHong Zhang if ((roworiented) && (n == 1)) { 478f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4790880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 480f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4810880e062SHong Zhang } else { /* Here a copy is required */ 4820880e062SHong Zhang if (roworiented) { 4830880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4840880e062SHong Zhang } else { 4850880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4860880e062SHong Zhang } 4870880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4880880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4890880e062SHong Zhang *barray++ = *value++; 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang barray -=bs2; 4930880e062SHong Zhang } 4940880e062SHong Zhang 4950880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 4960880e062SHong Zhang col = in[j] - cstart; 49736bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 49826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 500bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang else { 5030880e062SHong Zhang if (mat->was_assembled) { 5040880e062SHong Zhang if (!baij->colmap) { 505ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5060880e062SHong Zhang } 5070880e062SHong Zhang 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5090880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5101302d50aSBarry Smith { PetscInt data; 5110880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 512e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5130880e062SHong Zhang } 5140880e062SHong Zhang #else 515e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5160880e062SHong Zhang #endif 5170880e062SHong Zhang #endif 5180880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5190880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5200880e062SHong Zhang col = (col - 1)/bs; 5210880e062SHong Zhang #else 5220880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5230880e062SHong Zhang #endif 5240880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 525ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5260880e062SHong Zhang col = in[j]; 5270880e062SHong Zhang } 52826fbe8dcSKarl Rupp } else col = in[j]; 52936bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 5300880e062SHong Zhang } 5310880e062SHong Zhang } 5320880e062SHong Zhang } else { 533bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 5340880e062SHong Zhang if (!baij->donotstash) { 5350880e062SHong Zhang if (roworiented) { 5360880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5370880e062SHong Zhang } else { 5380880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5390880e062SHong Zhang } 5400880e062SHong Zhang } 5410880e062SHong Zhang } 5420880e062SHong Zhang } 5430880e062SHong Zhang PetscFunctionReturn(0); 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 5481302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 549a30f8f8cSSatish Balay { 550f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5516849ba73SBarry Smith PetscErrorCode ierr; 552d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 553d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay PetscFunctionBegin; 556a30f8f8cSSatish Balay for (i=0; i<m; i++) { 557e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 558e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 559a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 560a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 561a30f8f8cSSatish Balay for (j=0; j<n; j++) { 562e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 563e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 564a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 565a30f8f8cSSatish Balay col = idxn[j] - bscstart; 566c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 567a30f8f8cSSatish Balay } else { 568a30f8f8cSSatish Balay if (!baij->colmap) { 569ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 572a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 573a30f8f8cSSatish Balay data--; 574a30f8f8cSSatish Balay #else 575a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 576a30f8f8cSSatish Balay #endif 577a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 578a30f8f8cSSatish Balay else { 579a30f8f8cSSatish Balay col = data + idxn[j]%bs; 580e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay PetscFunctionReturn(0); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 591dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 592a30f8f8cSSatish Balay { 593a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 594dfbe8321SBarry Smith PetscErrorCode ierr; 595a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598a30f8f8cSSatish Balay if (baij->size == 1) { 599a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 600a30f8f8cSSatish Balay } else { 601a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 602785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 603a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 605a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 606a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 607ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6088f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 609a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6100b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6110b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6120b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6130b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 614899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 615d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6160b8dc8d2SHong Zhang MatScalar *v; 6170b8dc8d2SHong Zhang 618dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 619d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6200b8dc8d2SHong Zhang /* Amat */ 6210b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 6220b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6230b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6240b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 6250b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6260b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 6270b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6280b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6290b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6300b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6310b8dc8d2SHong Zhang /* non-diagonal block */ 6320b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 6330b8dc8d2SHong Zhang } 6340b8dc8d2SHong Zhang } 6350b8dc8d2SHong Zhang } 6360b8dc8d2SHong Zhang } 6370b8dc8d2SHong Zhang /* Bmat */ 6380b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 6390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 6400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 6410b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 6420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 6430b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 6440b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 6450b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 6460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 6470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 6480b8dc8d2SHong Zhang rsum[grow+row] += vabs; 6490b8dc8d2SHong Zhang } 6500b8dc8d2SHong Zhang } 6510b8dc8d2SHong Zhang } 6520b8dc8d2SHong Zhang } 653ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6540b8dc8d2SHong Zhang *norm = 0.0; 655d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 6560b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 6570b8dc8d2SHong Zhang } 65874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 659f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 660a30f8f8cSSatish Balay } 661a30f8f8cSSatish Balay PetscFunctionReturn(0); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 6644a2ae208SSatish Balay #undef __FUNCT__ 6654a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 666dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 667a30f8f8cSSatish Balay { 668a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 669dfbe8321SBarry Smith PetscErrorCode ierr; 6701302d50aSBarry Smith PetscInt nstash,reallocs; 671a30f8f8cSSatish Balay InsertMode addv; 672a30f8f8cSSatish Balay 673a30f8f8cSSatish Balay PetscFunctionBegin; 67426fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 677ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 678ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 679a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 680a30f8f8cSSatish Balay 681d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 6821e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 683a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6841e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 685a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 6861e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 687a30f8f8cSSatish Balay PetscFunctionReturn(0); 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay 6904a2ae208SSatish Balay #undef __FUNCT__ 6914a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 692dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 693a30f8f8cSSatish Balay { 694a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 695a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 6966849ba73SBarry Smith PetscErrorCode ierr; 69713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 698e44c0bd4SBarry Smith PetscInt *row,*col; 699ace3abfcSBarry Smith PetscBool other_disassembled; 70013f74950SBarry Smith PetscMPIInt n; 701ace3abfcSBarry Smith PetscBool r1,r2,r3; 702a30f8f8cSSatish Balay MatScalar *val; 703a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 704a30f8f8cSSatish Balay 70591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 706a30f8f8cSSatish Balay PetscFunctionBegin; 7074cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 708a30f8f8cSSatish Balay while (1) { 709a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 710a30f8f8cSSatish Balay if (!flg) break; 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay for (i=0; i<n;) { 713a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 71426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 71526fbe8dcSKarl Rupp if (row[j] != rstart) break; 71626fbe8dcSKarl Rupp } 717a30f8f8cSSatish Balay if (j < n) ncols = j-i; 718a30f8f8cSSatish Balay else ncols = n-i; 719a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 720dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 721a30f8f8cSSatish Balay i = j; 722a30f8f8cSSatish Balay } 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 725a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 726a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 727a30f8f8cSSatish Balay restore the original flags */ 728a30f8f8cSSatish Balay r1 = baij->roworiented; 729a30f8f8cSSatish Balay r2 = a->roworiented; 73091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 73126fbe8dcSKarl Rupp 732a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 733a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 73426fbe8dcSKarl Rupp 73591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 736a30f8f8cSSatish Balay while (1) { 737a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 738a30f8f8cSSatish Balay if (!flg) break; 739a30f8f8cSSatish Balay 740a30f8f8cSSatish Balay for (i=0; i<n;) { 741a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 74226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 74326fbe8dcSKarl Rupp if (row[j] != rstart) break; 74426fbe8dcSKarl Rupp } 745a30f8f8cSSatish Balay if (j < n) ncols = j-i; 746a30f8f8cSSatish Balay else ncols = n-i; 747dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 748a30f8f8cSSatish Balay i = j; 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay } 751a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 75226fbe8dcSKarl Rupp 753a30f8f8cSSatish Balay baij->roworiented = r1; 754a30f8f8cSSatish Balay a->roworiented = r2; 75526fbe8dcSKarl Rupp 75691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay 759a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 761a30f8f8cSSatish Balay 762a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 763a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 764a30f8f8cSSatish Balay /* 765a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 766a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 767a30f8f8cSSatish Balay */ 768a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 769ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 770a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 771ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay } 774a30f8f8cSSatish Balay 775a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 77640781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 777a30f8f8cSSatish Balay } 778a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 779a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 780a30f8f8cSSatish Balay 78174ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 78226fbe8dcSKarl Rupp 783a30f8f8cSSatish Balay baij->rowvalues = 0; 7844f9cfa9eSBarry Smith 7854f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 7864f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 787e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 78809e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 789e56f5c9eSBarry Smith } 790a30f8f8cSSatish Balay PetscFunctionReturn(0); 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay 7937da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 794dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 7959804daf3SBarry Smith #include <petscdraw.h> 7964a2ae208SSatish Balay #undef __FUNCT__ 7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 7986849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 799a30f8f8cSSatish Balay { 800a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 801dfbe8321SBarry Smith PetscErrorCode ierr; 802d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8037da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 804ace3abfcSBarry Smith PetscBool iascii,isdraw; 805b0a32e0cSBarry Smith PetscViewer sviewer; 806f3ef73ceSBarry Smith PetscViewerFormat format; 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay PetscFunctionBegin; 809251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 810251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 81132077d6dSBarry Smith if (iascii) { 812b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 813456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 814a30f8f8cSSatish Balay MatInfo info; 815ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8177b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 8187b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 819a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 820e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 821a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 822e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 823b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8247b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 82507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 826a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 827a30f8f8cSSatish Balay PetscFunctionReturn(0); 828fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 82977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 830a30f8f8cSSatish Balay PetscFunctionReturn(0); 831c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 832c1490034SHong Zhang PetscFunctionReturn(0); 833a30f8f8cSSatish Balay } 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay 836a30f8f8cSSatish Balay if (isdraw) { 837b0a32e0cSBarry Smith PetscDraw draw; 838ace3abfcSBarry Smith PetscBool isnull; 839b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 840b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay 8437da1fb6eSBarry Smith { 844a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 845a30f8f8cSSatish Balay Mat A; 84665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 848d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 849a30f8f8cSSatish Balay MatScalar *a; 8503e219373SBarry Smith const char *matname; 851a30f8f8cSSatish Balay 852f204ca49SKris Buschelman /* Should this be the same type as mat? */ 853ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 854a30f8f8cSSatish Balay if (!rank) { 855f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 856a30f8f8cSSatish Balay } else { 857f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 858a30f8f8cSSatish Balay } 859f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 8600298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 8612b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 8623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 863a30f8f8cSSatish Balay 864a30f8f8cSSatish Balay /* copy over the A part */ 86565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 866a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 867785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 870e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 87126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 872a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 873e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 874a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 875dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 87626fbe8dcSKarl Rupp col++; 87726fbe8dcSKarl Rupp a += bs; 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay } 880a30f8f8cSSatish Balay } 881a30f8f8cSSatish Balay /* copy over the B part */ 88265d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 88365d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 884a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 885e9f7bc9eSHong Zhang 886e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 88726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 888a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 889a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 890a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 891799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 89226fbe8dcSKarl Rupp col++; 89326fbe8dcSKarl Rupp a += bs; 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay } 896a30f8f8cSSatish Balay } 897a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 898a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 899a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 900a30f8f8cSSatish Balay /* 901a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 902b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 903a30f8f8cSSatish Balay */ 904b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 905ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9063e219373SBarry Smith if (!rank) { 907ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 9087da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 909a30f8f8cSSatish Balay } 910b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 9116bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 912a30f8f8cSSatish Balay } 913a30f8f8cSSatish Balay PetscFunctionReturn(0); 914a30f8f8cSSatish Balay } 915a30f8f8cSSatish Balay 9164a2ae208SSatish Balay #undef __FUNCT__ 9174a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 918dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 919a30f8f8cSSatish Balay { 920dfbe8321SBarry Smith PetscErrorCode ierr; 921ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay PetscFunctionBegin; 924251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 925251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 926251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 927251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 92832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 929a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 930a30f8f8cSSatish Balay } 931a30f8f8cSSatish Balay PetscFunctionReturn(0); 932a30f8f8cSSatish Balay } 933a30f8f8cSSatish Balay 9344a2ae208SSatish Balay #undef __FUNCT__ 9354a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 936dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 937a30f8f8cSSatish Balay { 938a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 939dfbe8321SBarry Smith PetscErrorCode ierr; 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay PetscFunctionBegin; 942a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 943d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 944a30f8f8cSSatish Balay #endif 945a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 946a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 9476bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 9486bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 949a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 9506bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 951a30f8f8cSSatish Balay #else 95205b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 953a30f8f8cSSatish Balay #endif 95405b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 9556bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 9566bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 9576bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 9586bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 9596bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 9606bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 9616bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 9626bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 9635755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 96405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 96505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 9666bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 9676bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 9686bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 969ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 97005b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 971a30f8f8cSSatish Balay #endif 97259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 97359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 974899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 975bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 976901853e0SKris Buschelman 977dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 978bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 979bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 980bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 981bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 982bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 9836214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 9846214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 9856214f412SHong Zhang #endif 986a30f8f8cSSatish Balay PetscFunctionReturn(0); 987a30f8f8cSSatish Balay } 988a30f8f8cSSatish Balay 9894a2ae208SSatish Balay #undef __FUNCT__ 990547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 991547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 992547795f9SHong Zhang { 993547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 994547795f9SHong Zhang PetscErrorCode ierr; 995547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 996547795f9SHong Zhang PetscScalar *x,*from; 997547795f9SHong Zhang 998547795f9SHong Zhang PetscFunctionBegin; 999547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1000e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1001547795f9SHong Zhang 1002547795f9SHong Zhang /* diagonal part */ 1003547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1004547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1005547795f9SHong Zhang 1006547795f9SHong Zhang /* subdiagonal part */ 1007547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1008547795f9SHong Zhang 1009547795f9SHong Zhang /* copy x into the vec slvec0 */ 1010547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1011547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1012547795f9SHong Zhang 1013547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1014547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1015547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1016547795f9SHong Zhang 1017547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1018547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1019547795f9SHong Zhang /* supperdiagonal part */ 1020547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1021547795f9SHong Zhang PetscFunctionReturn(0); 1022547795f9SHong Zhang } 1023547795f9SHong Zhang 1024547795f9SHong Zhang #undef __FUNCT__ 1025a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 1026dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1027a9d4b620SHong Zhang { 1028a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1029dfbe8321SBarry Smith PetscErrorCode ierr; 1030d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 1031d9ca1df4SBarry Smith PetscScalar *from; 1032d9ca1df4SBarry Smith const PetscScalar *x; 1033a9d4b620SHong Zhang 1034a9d4b620SHong Zhang PetscFunctionBegin; 1035a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1036e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1037a9d4b620SHong Zhang 1038a9d4b620SHong Zhang /* diagonal part */ 1039a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1040fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1041a9d4b620SHong Zhang 1042a9d4b620SHong Zhang /* subdiagonal part */ 1043a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1044fc165ae2SBarry Smith 1045a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10461ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1047d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1048a9d4b620SHong Zhang 1049fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1050fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1051d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1052fc165ae2SBarry Smith 1053fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1054ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1055a9d4b620SHong Zhang /* supperdiagonal part */ 1056a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1057a9d4b620SHong Zhang PetscFunctionReturn(0); 1058a9d4b620SHong Zhang } 1059a9d4b620SHong Zhang 1060a9d4b620SHong Zhang #undef __FUNCT__ 106140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 1062dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1063a30f8f8cSSatish Balay { 1064a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1065dfbe8321SBarry Smith PetscErrorCode ierr; 10661302d50aSBarry Smith PetscInt nt; 1067a30f8f8cSSatish Balay 1068a30f8f8cSSatish Balay PetscFunctionBegin; 1069a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1070e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1071e7e72b3dSBarry Smith 1072a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1073e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 107465d70643SHong Zhang 1075ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1076b941877fSHong Zhang /* do diagonal part */ 1077b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1078b941877fSHong Zhang /* do supperdiagonal part */ 1079ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1080b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1081b941877fSHong Zhang /* do subdiagonal part */ 1082b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1083ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1084ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1085a30f8f8cSSatish Balay PetscFunctionReturn(0); 1086a30f8f8cSSatish Balay } 1087a30f8f8cSSatish Balay 10884a2ae208SSatish Balay #undef __FUNCT__ 10894a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1090dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1091a30f8f8cSSatish Balay { 1092de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1093dfbe8321SBarry Smith PetscErrorCode ierr; 1094d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1095d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1096d9ca1df4SBarry Smith const PetscScalar *x; 1097a9d4b620SHong Zhang 1098a9d4b620SHong Zhang PetscFunctionBegin; 1099a9d4b620SHong Zhang /* 1100ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 11010ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 1102a9d4b620SHong Zhang */ 1103a9d4b620SHong Zhang /* diagonal part */ 1104a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11052dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1106a9d4b620SHong Zhang 1107a9d4b620SHong Zhang /* subdiagonal part */ 1108a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1109a9d4b620SHong Zhang 1110a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1113a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 11141ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1115a9d4b620SHong Zhang 1116ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1117d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1118ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1119a9d4b620SHong Zhang 1120a9d4b620SHong Zhang /* supperdiagonal part */ 1121a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1122a9d4b620SHong Zhang PetscFunctionReturn(0); 1123a9d4b620SHong Zhang } 1124a9d4b620SHong Zhang 1125a9d4b620SHong Zhang #undef __FUNCT__ 1126a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1127dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1128a9d4b620SHong Zhang { 1129a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1130dfbe8321SBarry Smith PetscErrorCode ierr; 1131a30f8f8cSSatish Balay 1132a30f8f8cSSatish Balay PetscFunctionBegin; 1133ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1134b941877fSHong Zhang /* do diagonal part */ 1135b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1136b941877fSHong Zhang /* do supperdiagonal part */ 1137ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1138de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1139de8b6608SHong Zhang 1140b941877fSHong Zhang /* do subdiagonal part */ 1141a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1142ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1143ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1144a30f8f8cSSatish Balay PetscFunctionReturn(0); 1145a30f8f8cSSatish Balay } 1146a30f8f8cSSatish Balay 1147a30f8f8cSSatish Balay /* 1148a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1149a30f8f8cSSatish Balay diagonal block 1150a30f8f8cSSatish Balay */ 11514a2ae208SSatish Balay #undef __FUNCT__ 11524a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1153dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1154a30f8f8cSSatish Balay { 1155a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1156dfbe8321SBarry Smith PetscErrorCode ierr; 1157a30f8f8cSSatish Balay 1158a30f8f8cSSatish Balay PetscFunctionBegin; 1159e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1160a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1161a30f8f8cSSatish Balay PetscFunctionReturn(0); 1162a30f8f8cSSatish Balay } 1163a30f8f8cSSatish Balay 11644a2ae208SSatish Balay #undef __FUNCT__ 11654a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1166f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1167a30f8f8cSSatish Balay { 1168a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1169dfbe8321SBarry Smith PetscErrorCode ierr; 1170a30f8f8cSSatish Balay 1171a30f8f8cSSatish Balay PetscFunctionBegin; 1172f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1173f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay PetscFunctionReturn(0); 1175a30f8f8cSSatish Balay } 1176a30f8f8cSSatish Balay 11774a2ae208SSatish Balay #undef __FUNCT__ 11784a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 11791302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1180a30f8f8cSSatish Balay { 1181d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1182d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1183d0d4cfc2SHong Zhang PetscErrorCode ierr; 1184d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1185d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1186899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1187d0d4cfc2SHong Zhang 1188a30f8f8cSSatish Balay PetscFunctionBegin; 1189e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1190d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1191d0d4cfc2SHong Zhang 1192d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1193d0d4cfc2SHong Zhang /* 1194d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1195d0d4cfc2SHong Zhang */ 1196d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1197d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1198d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1199d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1200d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 120126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1202d0d4cfc2SHong Zhang } 1203dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1204d0d4cfc2SHong Zhang } 1205d0d4cfc2SHong Zhang 1206e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1207d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1208d0d4cfc2SHong Zhang 1209d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1210d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1211d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1212d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1213d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1214d0d4cfc2SHong Zhang nztot = nzA + nzB; 1215d0d4cfc2SHong Zhang 1216d0d4cfc2SHong Zhang cmap = mat->garray; 1217d0d4cfc2SHong Zhang if (v || idx) { 1218d0d4cfc2SHong Zhang if (nztot) { 1219d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1220d0d4cfc2SHong Zhang PetscInt imark = -1; 1221d0d4cfc2SHong Zhang if (v) { 1222d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1223d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1224d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1225d0d4cfc2SHong Zhang else break; 1226d0d4cfc2SHong Zhang } 1227d0d4cfc2SHong Zhang imark = i; 1228d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1229d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1230d0d4cfc2SHong Zhang } 1231d0d4cfc2SHong Zhang if (idx) { 1232d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1233d0d4cfc2SHong Zhang if (imark > -1) { 1234d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1235d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1236d0d4cfc2SHong Zhang } 1237d0d4cfc2SHong Zhang } else { 1238d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 123926fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1240d0d4cfc2SHong Zhang else break; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang imark = i; 1243d0d4cfc2SHong Zhang } 1244d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1245d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1246d0d4cfc2SHong Zhang } 1247d0d4cfc2SHong Zhang } else { 1248d0d4cfc2SHong Zhang if (idx) *idx = 0; 1249d0d4cfc2SHong Zhang if (v) *v = 0; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang } 1252d0d4cfc2SHong Zhang *nz = nztot; 1253d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1254d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1255a30f8f8cSSatish Balay PetscFunctionReturn(0); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay 12584a2ae208SSatish Balay #undef __FUNCT__ 12594a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 12601302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1261a30f8f8cSSatish Balay { 1262a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1263a30f8f8cSSatish Balay 1264a30f8f8cSSatish Balay PetscFunctionBegin; 1265e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1266a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1267a30f8f8cSSatish Balay PetscFunctionReturn(0); 1268a30f8f8cSSatish Balay } 1269a30f8f8cSSatish Balay 12704a2ae208SSatish Balay #undef __FUNCT__ 1271d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1272d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1273d0d4cfc2SHong Zhang { 1274d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1275d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1276d0d4cfc2SHong Zhang 1277d0d4cfc2SHong Zhang PetscFunctionBegin; 1278d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1279d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1280d0d4cfc2SHong Zhang } 1281d0d4cfc2SHong Zhang #undef __FUNCT__ 1282d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1283d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1284d0d4cfc2SHong Zhang { 1285d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1286d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1287d0d4cfc2SHong Zhang 1288d0d4cfc2SHong Zhang PetscFunctionBegin; 1289d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1290d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1291d0d4cfc2SHong Zhang } 1292d0d4cfc2SHong Zhang 1293d0d4cfc2SHong Zhang #undef __FUNCT__ 129499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 129599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 129699cafbc1SBarry Smith { 129799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 129899cafbc1SBarry Smith PetscErrorCode ierr; 129999cafbc1SBarry Smith 130099cafbc1SBarry Smith PetscFunctionBegin; 130199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 130299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 130399cafbc1SBarry Smith PetscFunctionReturn(0); 130499cafbc1SBarry Smith } 130599cafbc1SBarry Smith 130699cafbc1SBarry Smith #undef __FUNCT__ 130799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 130899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 130999cafbc1SBarry Smith { 131099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 131199cafbc1SBarry Smith PetscErrorCode ierr; 131299cafbc1SBarry Smith 131399cafbc1SBarry Smith PetscFunctionBegin; 131499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 131599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 131699cafbc1SBarry Smith PetscFunctionReturn(0); 131799cafbc1SBarry Smith } 131899cafbc1SBarry Smith 131936032a97SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatGetSubMatrix_MPISBAIJ() 132036032a97SHong Zhang Input: isrow - distributed(parallel), 132136032a97SHong Zhang iscol_local - locally owned (seq) 132236032a97SHong Zhang */ 132399cafbc1SBarry Smith #undef __FUNCT__ 132436032a97SHong Zhang #define __FUNCT__ "ISEqual_private" 132536032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13268f46ffcaSHong Zhang { 13278f46ffcaSHong Zhang PetscErrorCode ierr; 13288f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13298f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 133036032a97SHong Zhang 133136032a97SHong Zhang PetscFunctionBegin; 13328f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13338f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13341098a8e8SHong Zhang if (sz1 > sz2) { 13351098a8e8SHong Zhang *flg = PETSC_FALSE; 13361098a8e8SHong Zhang PetscFunctionReturn(0); 13371098a8e8SHong Zhang } 13388f46ffcaSHong Zhang 13398f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13408f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13418f46ffcaSHong Zhang 13428f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13438f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 13448f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 13458f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 13468f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13478f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13488f46ffcaSHong Zhang 13498f46ffcaSHong Zhang nmatch=0; 13508f46ffcaSHong Zhang k = 0; 13518f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13528f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13538f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13548f46ffcaSHong Zhang k = j; nmatch++; 13558f46ffcaSHong Zhang break; 13568f46ffcaSHong Zhang } 13578f46ffcaSHong Zhang } 13588f46ffcaSHong Zhang } 13598f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13608f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13618f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13628f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13631098a8e8SHong Zhang if (nmatch < sz1) { 13641098a8e8SHong Zhang *flg = PETSC_FALSE; 13651098a8e8SHong Zhang } else { 13661098a8e8SHong Zhang *flg = PETSC_TRUE; 13671098a8e8SHong Zhang } 136836032a97SHong Zhang PetscFunctionReturn(0); 13698f46ffcaSHong Zhang } 137036032a97SHong Zhang 137136032a97SHong Zhang #undef __FUNCT__ 137236032a97SHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 137336032a97SHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 137436032a97SHong Zhang { 137536032a97SHong Zhang PetscErrorCode ierr; 137636032a97SHong Zhang IS iscol_local; 137736032a97SHong Zhang PetscInt csize; 137836032a97SHong Zhang PetscBool isequal; 137936032a97SHong Zhang 138036032a97SHong Zhang PetscFunctionBegin; 138136032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 138236032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 138336032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 138436032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 138536032a97SHong Zhang } else { 138636032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 138736032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 138836032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 13898f46ffcaSHong Zhang } 13908f46ffcaSHong Zhang 13918f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 139236032a97SHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 13938f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 13948f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 13958f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 13968f46ffcaSHong Zhang } 13978f46ffcaSHong Zhang PetscFunctionReturn(0); 13988f46ffcaSHong Zhang } 13998f46ffcaSHong Zhang 14008f46ffcaSHong Zhang #undef __FUNCT__ 14014a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1402dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1403a30f8f8cSSatish Balay { 1404a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1405dfbe8321SBarry Smith PetscErrorCode ierr; 1406a30f8f8cSSatish Balay 1407a30f8f8cSSatish Balay PetscFunctionBegin; 1408a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1409a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1410a30f8f8cSSatish Balay PetscFunctionReturn(0); 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay 14134a2ae208SSatish Balay #undef __FUNCT__ 14144a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1415dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1416a30f8f8cSSatish Balay { 1417a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1418a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1419dfbe8321SBarry Smith PetscErrorCode ierr; 1420a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1421a30f8f8cSSatish Balay 1422a30f8f8cSSatish Balay PetscFunctionBegin; 1423d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 142426fbe8dcSKarl Rupp 1425a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 142626fbe8dcSKarl Rupp 1427a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1428a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 142926fbe8dcSKarl Rupp 1430a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 143126fbe8dcSKarl Rupp 1432a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1433a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1434a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1435a30f8f8cSSatish Balay info->nz_used = isend[0]; 1436a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1437a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1438a30f8f8cSSatish Balay info->memory = isend[3]; 1439a30f8f8cSSatish Balay info->mallocs = isend[4]; 1440a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1441ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144226fbe8dcSKarl Rupp 1443a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1444a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1445a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1446a30f8f8cSSatish Balay info->memory = irecv[3]; 1447a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1448a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1449ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 145026fbe8dcSKarl Rupp 1451a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1452a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1453a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1454a30f8f8cSSatish Balay info->memory = irecv[3]; 1455a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1456f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1457a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1458a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1459a30f8f8cSSatish Balay info->factor_mallocs = 0; 1460a30f8f8cSSatish Balay PetscFunctionReturn(0); 1461a30f8f8cSSatish Balay } 1462a30f8f8cSSatish Balay 14634a2ae208SSatish Balay #undef __FUNCT__ 14644a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1465ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1466a30f8f8cSSatish Balay { 1467a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1468d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1469dfbe8321SBarry Smith PetscErrorCode ierr; 1470a30f8f8cSSatish Balay 1471a30f8f8cSSatish Balay PetscFunctionBegin; 1472e98b92d7SKris Buschelman switch (op) { 1473512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1474e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1476a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1477e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14784e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14794e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1480e98b92d7SKris Buschelman break; 1481e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 14824e0d8c25SBarry Smith a->roworiented = flg; 148326fbe8dcSKarl Rupp 14844e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14854e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1486e98b92d7SKris Buschelman break; 14874e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1488290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1489e98b92d7SKris Buschelman break; 1490e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14914e0d8c25SBarry Smith a->donotstash = flg; 1492e98b92d7SKris Buschelman break; 1493e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 14944e0d8c25SBarry Smith a->ht_flag = flg; 1495e98b92d7SKris Buschelman break; 14969a4540c5SBarry Smith case MAT_HERMITIAN: 1497e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1498eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 149926fbe8dcSKarl Rupp 1500547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1501eeffb40dSHong Zhang break; 1502ffa07934SHong Zhang case MAT_SPD: 1503ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1504ffa07934SHong Zhang A->spd = flg; 1505ffa07934SHong Zhang if (flg) { 1506ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1507ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1508ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1509ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1510ffa07934SHong Zhang } 1511ffa07934SHong Zhang break; 151277e54ba9SKris Buschelman case MAT_SYMMETRIC: 1513eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1514eeffb40dSHong Zhang break; 151577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1516eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1517eeffb40dSHong Zhang break; 15189a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1519e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1520290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 152177e54ba9SKris Buschelman break; 1522d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15234e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1524d0d4cfc2SHong Zhang break; 1525d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15264e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1527d0d4cfc2SHong Zhang break; 1528d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15294e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1530d0d4cfc2SHong Zhang break; 1531e98b92d7SKris Buschelman default: 1532e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1533a30f8f8cSSatish Balay } 1534a30f8f8cSSatish Balay PetscFunctionReturn(0); 1535a30f8f8cSSatish Balay } 1536a30f8f8cSSatish Balay 15374a2ae208SSatish Balay #undef __FUNCT__ 15388115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1539fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1540a30f8f8cSSatish Balay { 1541dfbe8321SBarry Smith PetscErrorCode ierr; 15426e111a19SKarl Rupp 1543a30f8f8cSSatish Balay PetscFunctionBegin; 1544815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1545999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1546fc4dec0aSBarry Smith } 15478115998fSBarry Smith PetscFunctionReturn(0); 1548a30f8f8cSSatish Balay } 1549a30f8f8cSSatish Balay 15504a2ae208SSatish Balay #undef __FUNCT__ 15514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1552dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1553a30f8f8cSSatish Balay { 1554a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1555a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1556dfbe8321SBarry Smith PetscErrorCode ierr; 15575e90f9d9SHong Zhang PetscInt nv,m,n; 1558ace3abfcSBarry Smith PetscBool flg; 1559a30f8f8cSSatish Balay 1560a30f8f8cSSatish Balay PetscFunctionBegin; 1561a30f8f8cSSatish Balay if (ll != rr) { 1562b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1563e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1564a30f8f8cSSatish Balay } 1565b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1566b3bf805bSHong Zhang 15675e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1568e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1569b3bf805bSHong Zhang 15705e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1571e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15725e90f9d9SHong Zhang 1573ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15745e90f9d9SHong Zhang 15755e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 15760298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 15775e90f9d9SHong Zhang 15785e90f9d9SHong Zhang /* scale the diagonal part */ 1579a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1580a30f8f8cSSatish Balay 15815e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1582ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15830298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1584a30f8f8cSSatish Balay PetscFunctionReturn(0); 1585a30f8f8cSSatish Balay } 1586a30f8f8cSSatish Balay 15874a2ae208SSatish Balay #undef __FUNCT__ 15884a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1589dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1590a30f8f8cSSatish Balay { 1591f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1592dfbe8321SBarry Smith PetscErrorCode ierr; 1593a30f8f8cSSatish Balay 1594a30f8f8cSSatish Balay PetscFunctionBegin; 1595a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1596a30f8f8cSSatish Balay PetscFunctionReturn(0); 1597a30f8f8cSSatish Balay } 1598a30f8f8cSSatish Balay 15996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1600a30f8f8cSSatish Balay 16014a2ae208SSatish Balay #undef __FUNCT__ 16024a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1603ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1604a30f8f8cSSatish Balay { 1605a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1606a30f8f8cSSatish Balay Mat a,b,c,d; 1607ace3abfcSBarry Smith PetscBool flg; 1608dfbe8321SBarry Smith PetscErrorCode ierr; 1609a30f8f8cSSatish Balay 1610a30f8f8cSSatish Balay PetscFunctionBegin; 1611a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1612a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1613a30f8f8cSSatish Balay 1614a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1615abc0a331SBarry Smith if (flg) { 1616a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1617a30f8f8cSSatish Balay } 1618ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1619a30f8f8cSSatish Balay PetscFunctionReturn(0); 1620a30f8f8cSSatish Balay } 1621a30f8f8cSSatish Balay 16224a2ae208SSatish Balay #undef __FUNCT__ 16233c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 16243c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16253c896bc6SHong Zhang { 16263c896bc6SHong Zhang PetscErrorCode ierr; 16273c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16283c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16293c896bc6SHong Zhang 16303c896bc6SHong Zhang PetscFunctionBegin; 16313c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16323c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1633d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16343c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1635d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16363c896bc6SHong Zhang } else { 16373c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16383c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16393c896bc6SHong Zhang } 16403c896bc6SHong Zhang PetscFunctionReturn(0); 16413c896bc6SHong Zhang } 16423c896bc6SHong Zhang 16433c896bc6SHong Zhang #undef __FUNCT__ 16444994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 16454994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1646273d9f13SBarry Smith { 1647dfbe8321SBarry Smith PetscErrorCode ierr; 1648273d9f13SBarry Smith 1649273d9f13SBarry Smith PetscFunctionBegin; 1650535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1651273d9f13SBarry Smith PetscFunctionReturn(0); 1652273d9f13SBarry Smith } 1653a5e6ed63SBarry Smith 16544fe895cdSHong Zhang #undef __FUNCT__ 16554fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 16564fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16574fe895cdSHong Zhang { 16584fe895cdSHong Zhang PetscErrorCode ierr; 16594fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16604fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16614fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16624fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16634fe895cdSHong Zhang 16644fe895cdSHong Zhang PetscFunctionBegin; 16654fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16664fe895cdSHong Zhang PetscScalar alpha = a; 16674fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16684fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1669c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16708b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16714fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16724fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1673c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16748b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1675a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1676ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1677ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1678ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1679ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 16804fe895cdSHong Zhang } else { 16814de5dceeSHong Zhang Mat B; 16824de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 16834de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1684d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 16854de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 16864de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 16874de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 16884de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 16894de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 16904de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 16914de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 16924de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 16934de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 16944de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 16954de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 16964de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 16974de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 16984de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 16994de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1700d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17014de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17024fe895cdSHong Zhang } 17034fe895cdSHong Zhang PetscFunctionReturn(0); 17044fe895cdSHong Zhang } 17054fe895cdSHong Zhang 1706a5e6ed63SBarry Smith #undef __FUNCT__ 1707a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 17081302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1709a5e6ed63SBarry Smith { 17106849ba73SBarry Smith PetscErrorCode ierr; 17111302d50aSBarry Smith PetscInt i; 1712ace3abfcSBarry Smith PetscBool flg; 1713a5e6ed63SBarry Smith 17146849ba73SBarry Smith PetscFunctionBegin; 17154dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1716a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1717a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 17184dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 17194dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1720a5e6ed63SBarry Smith } 17214dcd73b1SHong Zhang } 1722a5e6ed63SBarry Smith PetscFunctionReturn(0); 1723a5e6ed63SBarry Smith } 1724a5e6ed63SBarry Smith 1725*7d68702bSBarry Smith #undef __FUNCT__ 1726*7d68702bSBarry Smith #define __FUNCT__ "MatShift_MPISBAIJ" 1727*7d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 1728*7d68702bSBarry Smith { 1729*7d68702bSBarry Smith PetscErrorCode ierr; 1730*7d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 1731*7d68702bSBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data,*bij = (Mat_SeqSBAIJ*)maij->B->data; 1732*7d68702bSBarry Smith 1733*7d68702bSBarry Smith PetscFunctionBegin; 1734*7d68702bSBarry Smith if (!aij->nz && !bij->nz) { 1735*7d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 1736*7d68702bSBarry Smith } 1737*7d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 1738*7d68702bSBarry Smith PetscFunctionReturn(0); 1739*7d68702bSBarry Smith } 1740*7d68702bSBarry Smith 1741a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17423964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1743a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1744a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1745a9d4b620SHong Zhang MatMult_MPISBAIJ, 174697304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1747431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1748431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1749a30f8f8cSSatish Balay 0, 1750a30f8f8cSSatish Balay 0, 1751a30f8f8cSSatish Balay 0, 175297304618SKris Buschelman /* 10*/ 0, 1753a30f8f8cSSatish Balay 0, 1754a30f8f8cSSatish Balay 0, 175541f059aeSBarry Smith MatSOR_MPISBAIJ, 1756a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 175797304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1758a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1759a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1760a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1761a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 176297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1763a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1764a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1765a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1766d519adbfSMatthew Knepley /* 24*/ 0, 1767a30f8f8cSSatish Balay 0, 1768a30f8f8cSSatish Balay 0, 1769a30f8f8cSSatish Balay 0, 1770a30f8f8cSSatish Balay 0, 17714994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1772b5df2d14SHong Zhang 0, 1773a30f8f8cSSatish Balay 0, 1774a30f8f8cSSatish Balay 0, 1775a30f8f8cSSatish Balay 0, 1776d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1777a30f8f8cSSatish Balay 0, 1778a30f8f8cSSatish Balay 0, 1779a30f8f8cSSatish Balay 0, 1780a30f8f8cSSatish Balay 0, 1781d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1782a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1783d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1784a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 17853c896bc6SHong Zhang MatCopy_MPISBAIJ, 1786d519adbfSMatthew Knepley /* 44*/ 0, 1787a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1788*7d68702bSBarry Smith MatShift_MPISBAIJ, 1789a30f8f8cSSatish Balay 0, 1790a30f8f8cSSatish Balay 0, 1791f73d5cc4SBarry Smith /* 49*/ 0, 1792a30f8f8cSSatish Balay 0, 1793a30f8f8cSSatish Balay 0, 1794a30f8f8cSSatish Balay 0, 1795a30f8f8cSSatish Balay 0, 1796d519adbfSMatthew Knepley /* 54*/ 0, 1797a30f8f8cSSatish Balay 0, 1798a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1799a30f8f8cSSatish Balay 0, 1800a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18018f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1802a30f8f8cSSatish Balay 0, 1803a30f8f8cSSatish Balay 0, 1804357abbc8SBarry Smith 0, 180524d5174aSHong Zhang 0, 1806d519adbfSMatthew Knepley /* 64*/ 0, 180724d5174aSHong Zhang 0, 180824d5174aSHong Zhang 0, 180924d5174aSHong Zhang 0, 181024d5174aSHong Zhang 0, 1811d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 181224d5174aSHong Zhang 0, 181397304618SKris Buschelman 0, 181497304618SKris Buschelman 0, 181597304618SKris Buschelman 0, 1816d519adbfSMatthew Knepley /* 74*/ 0, 181797304618SKris Buschelman 0, 181897304618SKris Buschelman 0, 181997304618SKris Buschelman 0, 182097304618SKris Buschelman 0, 1821d519adbfSMatthew Knepley /* 79*/ 0, 182297304618SKris Buschelman 0, 182397304618SKris Buschelman 0, 182497304618SKris Buschelman 0, 18255bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1826d519adbfSMatthew Knepley /* 84*/ 0, 1827865e5f61SKris Buschelman 0, 1828865e5f61SKris Buschelman 0, 1829865e5f61SKris Buschelman 0, 1830865e5f61SKris Buschelman 0, 1831d519adbfSMatthew Knepley /* 89*/ 0, 1832865e5f61SKris Buschelman 0, 1833865e5f61SKris Buschelman 0, 1834865e5f61SKris Buschelman 0, 1835865e5f61SKris Buschelman 0, 1836d519adbfSMatthew Knepley /* 94*/ 0, 1837865e5f61SKris Buschelman 0, 1838865e5f61SKris Buschelman 0, 183999cafbc1SBarry Smith 0, 184099cafbc1SBarry Smith 0, 1841d519adbfSMatthew Knepley /* 99*/ 0, 184299cafbc1SBarry Smith 0, 184399cafbc1SBarry Smith 0, 184499cafbc1SBarry Smith 0, 184599cafbc1SBarry Smith 0, 1846d519adbfSMatthew Knepley /*104*/ 0, 184799cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1848d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1849d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 185095936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 185195936485SShri Abhyankar /*109*/ 0, 185295936485SShri Abhyankar 0, 185395936485SShri Abhyankar 0, 185495936485SShri Abhyankar 0, 185595936485SShri Abhyankar 0, 185695936485SShri Abhyankar /*114*/ 0, 185795936485SShri Abhyankar 0, 185895936485SShri Abhyankar 0, 185995936485SShri Abhyankar 0, 186095936485SShri Abhyankar 0, 186195936485SShri Abhyankar /*119*/ 0, 186295936485SShri Abhyankar 0, 186395936485SShri Abhyankar 0, 18643964eb88SJed Brown 0, 18653964eb88SJed Brown 0, 18663964eb88SJed Brown /*124*/ 0, 18673964eb88SJed Brown 0, 18683964eb88SJed Brown 0, 18693964eb88SJed Brown 0, 18703964eb88SJed Brown 0, 18713964eb88SJed Brown /*129*/ 0, 18723964eb88SJed Brown 0, 18733964eb88SJed Brown 0, 18743964eb88SJed Brown 0, 18753964eb88SJed Brown 0, 18763964eb88SJed Brown /*134*/ 0, 18773964eb88SJed Brown 0, 18783964eb88SJed Brown 0, 18793964eb88SJed Brown 0, 18803964eb88SJed Brown 0, 18813964eb88SJed Brown /*139*/ 0, 1882f9426fe0SMark Adams 0, 188359f5e6ceSHong Zhang 0, 188459f5e6ceSHong Zhang 0, 188559f5e6ceSHong Zhang 0, 188659f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 188799cafbc1SBarry Smith }; 1888a30f8f8cSSatish Balay 18894a2ae208SSatish Balay #undef __FUNCT__ 18904a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 189111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1892a30f8f8cSSatish Balay { 1893a30f8f8cSSatish Balay PetscFunctionBegin; 1894a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1895a30f8f8cSSatish Balay PetscFunctionReturn(0); 1896a30f8f8cSSatish Balay } 1897a30f8f8cSSatish Balay 18984a2ae208SSatish Balay #undef __FUNCT__ 1899a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1900b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1901a23d5eceSKris Buschelman { 1902a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1903dfbe8321SBarry Smith PetscErrorCode ierr; 1904535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1905a23d5eceSKris Buschelman 1906a23d5eceSKris Buschelman PetscFunctionBegin; 190733d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 190826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 190926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1910e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1911899cda47SBarry Smith 1912a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1913d0f46423SBarry Smith mbs = B->rmap->n/bs; 1914d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1915c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1916a23d5eceSKris Buschelman 1917d0f46423SBarry Smith B->rmap->bs = bs; 1918a23d5eceSKris Buschelman b->bs2 = bs*bs; 1919a23d5eceSKris Buschelman b->mbs = mbs; 1920a23d5eceSKris Buschelman b->Mbs = Mbs; 1921de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1922de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1923a23d5eceSKris Buschelman 1924a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1925d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1926a23d5eceSKris Buschelman } 1927d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1928d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1929a23d5eceSKris Buschelman 1930d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1931d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1932a23d5eceSKris Buschelman 1933526dfc15SBarry Smith if (!B->preallocated) { 1934f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1935d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19369c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19373bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1938f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1939d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 19404aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 19413bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1942ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1943526dfc15SBarry Smith } 1944a23d5eceSKris Buschelman 1945526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1946526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 194726fbe8dcSKarl Rupp 1948526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1949a23d5eceSKris Buschelman PetscFunctionReturn(0); 1950a23d5eceSKris Buschelman } 1951a23d5eceSKris Buschelman 1952dfb205c3SBarry Smith #undef __FUNCT__ 1953dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1954dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1955dfb205c3SBarry Smith { 1956dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1957dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1958dfb205c3SBarry Smith const PetscInt *JJ =0; 1959dfb205c3SBarry Smith PetscScalar *values=0; 1960dfb205c3SBarry Smith PetscErrorCode ierr; 1961dfb205c3SBarry Smith 1962dfb205c3SBarry Smith PetscFunctionBegin; 1963ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1964dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1965dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1966dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1967dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1968e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1969dfb205c3SBarry Smith m = B->rmap->n/bs; 1970dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1971dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1972dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1973dfb205c3SBarry Smith 1974dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1975dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1976dfb205c3SBarry Smith for (i=0; i<m; i++) { 1977dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1978dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1979dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1980dfb205c3SBarry Smith JJ = jj + ii[i]; 1981dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1982dfb205c3SBarry Smith if (*JJ >= cstart) break; 1983dfb205c3SBarry Smith JJ++; 1984dfb205c3SBarry Smith } 1985dfb205c3SBarry Smith d = 0; 1986dfb205c3SBarry Smith for (; j<nz; j++) { 1987dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1988dfb205c3SBarry Smith d++; 1989dfb205c3SBarry Smith } 1990dfb205c3SBarry Smith d_nnz[i] = d; 1991dfb205c3SBarry Smith o_nnz[i] = nz - d; 1992dfb205c3SBarry Smith } 1993dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1994dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1995dfb205c3SBarry Smith 1996dfb205c3SBarry Smith values = (PetscScalar*)V; 1997dfb205c3SBarry Smith if (!values) { 1998785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1999dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2000dfb205c3SBarry Smith } 2001dfb205c3SBarry Smith for (i=0; i<m; i++) { 2002dfb205c3SBarry Smith PetscInt row = i + rstart; 2003dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2004dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2005dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2006dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2007dfb205c3SBarry Smith } 2008dfb205c3SBarry Smith 2009dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2010dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2011dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20127827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2013dfb205c3SBarry Smith PetscFunctionReturn(0); 2014dfb205c3SBarry Smith } 2015dfb205c3SBarry Smith 20160bad9183SKris Buschelman /*MC 2017fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2018828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2019828413b8SBarry Smith the matrix is stored. 2020828413b8SBarry Smith 2021828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2022828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20230bad9183SKris Buschelman 20240bad9183SKris Buschelman Options Database Keys: 20250bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20260bad9183SKris Buschelman 20270bad9183SKris Buschelman Level: beginner 20280bad9183SKris Buschelman 20290bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 20300bad9183SKris Buschelman M*/ 20310bad9183SKris Buschelman 20328cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 2033aa5a9175SDahai Guo 2034a23d5eceSKris Buschelman #undef __FUNCT__ 20354a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 20368cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2037b5df2d14SHong Zhang { 2038b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2039dfbe8321SBarry Smith PetscErrorCode ierr; 204094ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2041b5df2d14SHong Zhang 2042b5df2d14SHong Zhang PetscFunctionBegin; 2043b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2044b0a32e0cSBarry Smith B->data = (void*)b; 2045b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2046b5df2d14SHong Zhang 2047b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2048b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2049b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2050b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 205126fbe8dcSKarl Rupp 2052ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2053ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2054b5df2d14SHong Zhang 2055b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2056854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2057b5df2d14SHong Zhang 2058b5df2d14SHong Zhang /* build cache for off array entries formed */ 2059ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 206026fbe8dcSKarl Rupp 2061b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 20620298fd71SBarry Smith b->colmap = NULL; 20630298fd71SBarry Smith b->garray = NULL; 2064b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2065b5df2d14SHong Zhang 2066b5df2d14SHong Zhang /* stuff used in block assembly */ 2067b5df2d14SHong Zhang b->barray = 0; 2068b5df2d14SHong Zhang 2069b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2070b5df2d14SHong Zhang b->lvec = 0; 2071b5df2d14SHong Zhang b->Mvctx = 0; 207240781036SHong Zhang b->slvec0 = 0; 207340781036SHong Zhang b->slvec0b = 0; 207440781036SHong Zhang b->slvec1 = 0; 207540781036SHong Zhang b->slvec1a = 0; 207640781036SHong Zhang b->slvec1b = 0; 207740781036SHong Zhang b->sMvctx = 0; 2078b5df2d14SHong Zhang 2079b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2080b5df2d14SHong Zhang b->rowindices = 0; 2081b5df2d14SHong Zhang b->rowvalues = 0; 2082b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2083b5df2d14SHong Zhang 2084b5df2d14SHong Zhang /* hash table stuff */ 2085b5df2d14SHong Zhang b->ht = 0; 2086b5df2d14SHong Zhang b->hd = 0; 2087b5df2d14SHong Zhang b->ht_size = 0; 2088b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2089b5df2d14SHong Zhang b->ht_fact = 0; 2090b5df2d14SHong Zhang b->ht_total_ct = 0; 2091b5df2d14SHong Zhang b->ht_insert_ct = 0; 2092b5df2d14SHong Zhang 20937a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 20947a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 20957a868f3eSHong Zhang 209659ffdab8SBarry Smith b->in_loc = 0; 209759ffdab8SBarry Smith b->v_loc = 0; 209859ffdab8SBarry Smith b->n_loc = 0; 209994ae4db5SBarry Smith 2100bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2101bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2102bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 2103bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2104bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 2105bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 21066214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21076214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21086214f412SHong Zhang #endif 2109aa5a9175SDahai Guo 211023ce1328SBarry Smith B->symmetric = PETSC_TRUE; 211123ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 211223ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 211323ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 211426fbe8dcSKarl Rupp 211517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 211694ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 211794ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 211894ae4db5SBarry Smith if (flg) { 211994ae4db5SBarry Smith PetscReal fact = 1.39; 212094ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 212194ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 212294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 212394ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 212494ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 212594ae4db5SBarry Smith } 212694ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2127b5df2d14SHong Zhang PetscFunctionReturn(0); 2128b5df2d14SHong Zhang } 2129b5df2d14SHong Zhang 2130209238afSKris Buschelman /*MC 2131002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2132209238afSKris Buschelman 2133209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2134209238afSKris Buschelman and MATMPISBAIJ otherwise. 2135209238afSKris Buschelman 2136209238afSKris Buschelman Options Database Keys: 2137209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2138209238afSKris Buschelman 2139209238afSKris Buschelman Level: beginner 2140209238afSKris Buschelman 2141209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2142209238afSKris Buschelman M*/ 2143209238afSKris Buschelman 21444a2ae208SSatish Balay #undef __FUNCT__ 21454a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 2146b5df2d14SHong Zhang /*@C 2147b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2148b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2149b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2150b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2151b5df2d14SHong Zhang 2152b5df2d14SHong Zhang Collective on Mat 2153b5df2d14SHong Zhang 2154b5df2d14SHong Zhang Input Parameters: 21551c4f3114SJed Brown + B - the matrix 2156bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2157bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2158b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2159b5df2d14SHong Zhang submatrix (same for all local rows) 2160b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 21616d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 21620298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 216395742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2164b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2165b5df2d14SHong Zhang submatrix (same for all local rows). 2166b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2167c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 21680298fd71SBarry Smith (possibly different for each block row) or NULL. 2169b5df2d14SHong Zhang 2170b5df2d14SHong Zhang 2171b5df2d14SHong Zhang Options Database Keys: 2172b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2173b5df2d14SHong Zhang block calculations (much slower) 2174b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 2175b5df2d14SHong Zhang 2176b5df2d14SHong Zhang Notes: 2177b5df2d14SHong Zhang 2178b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2179b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2180b5df2d14SHong Zhang 218149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 218249a6f317SBarry Smith 2183b5df2d14SHong Zhang Storage Information: 2184b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2185b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2186b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2187b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2188b5df2d14SHong Zhang 2189b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2190b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 21910298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2192b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2193b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2194b5df2d14SHong Zhang 2195aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2196aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2197aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2198aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2199aa95bbe8SBarry Smith 2200b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2201b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2202b5df2d14SHong Zhang 2203b5df2d14SHong Zhang .vb 2204b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2205a4b1a0f6SJed Brown -------------------------- 2206c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2207c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2208c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2209a4b1a0f6SJed Brown -------------------------- 2210b5df2d14SHong Zhang .ve 2211b5df2d14SHong Zhang 2212b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2213b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22146d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22156d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2216b5df2d14SHong Zhang 22176d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22186d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2219c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2220c2fc9fa9SBarry Smith 2221b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2222b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2223b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2224b5df2d14SHong Zhang matrices. 2225b5df2d14SHong Zhang 2226b5df2d14SHong Zhang Level: intermediate 2227b5df2d14SHong Zhang 2228b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2229b5df2d14SHong Zhang 2230ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2231b5df2d14SHong Zhang @*/ 22327087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2233b5df2d14SHong Zhang { 22344ac538c5SBarry Smith PetscErrorCode ierr; 2235b5df2d14SHong Zhang 2236b5df2d14SHong Zhang PetscFunctionBegin; 22376ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22386ba663aaSJed Brown PetscValidType(B,1); 22396ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 22404ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2241b5df2d14SHong Zhang PetscFunctionReturn(0); 2242b5df2d14SHong Zhang } 2243b5df2d14SHong Zhang 22444a2ae208SSatish Balay #undef __FUNCT__ 224569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2246a30f8f8cSSatish Balay /*@C 224769b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2248a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2249a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2250a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2251a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay Collective on MPI_Comm 2254a30f8f8cSSatish Balay 2255a30f8f8cSSatish Balay Input Parameters: 2256a30f8f8cSSatish Balay + comm - MPI communicator 2257bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2258bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2259a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2260a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2261a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2262a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2263a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2264a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2265a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2266a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2267a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2268a30f8f8cSSatish Balay submatrix (same for all local rows) 2269a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 22706d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 22710298fd71SBarry Smith (possibly different for each block block row) or NULL. 227295742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 227395742e49SBarry Smith set its value even if it is zero. 2274a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2275a30f8f8cSSatish Balay submatrix (same for all local rows). 2276a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2277a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 22780298fd71SBarry Smith each block row) or NULL. 2279a30f8f8cSSatish Balay 2280a30f8f8cSSatish Balay Output Parameter: 2281a30f8f8cSSatish Balay . A - the matrix 2282a30f8f8cSSatish Balay 2283a30f8f8cSSatish Balay Options Database Keys: 2284a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2285a30f8f8cSSatish Balay block calculations (much slower) 2286a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2287a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2288a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2289a30f8f8cSSatish Balay 2290175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2291ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2292175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2293175b88e8SBarry Smith 2294a30f8f8cSSatish Balay Notes: 2295d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 22966d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2297d1be2dadSMatthew Knepley 2298a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2299a30f8f8cSSatish Balay (possibly both). 2300a30f8f8cSSatish Balay 2301a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2302a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2303a30f8f8cSSatish Balay 230449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 230549a6f317SBarry Smith 2306a30f8f8cSSatish Balay Storage Information: 2307a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2308a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2309a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2310a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2311a30f8f8cSSatish Balay 2312a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2313a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23140298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2315a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2316a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2319a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2320a30f8f8cSSatish Balay 2321a30f8f8cSSatish Balay .vb 2322a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2323a4b1a0f6SJed Brown -------------------------- 2324c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2325c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2326c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2327a4b1a0f6SJed Brown -------------------------- 2328a30f8f8cSSatish Balay .ve 2329a30f8f8cSSatish Balay 2330a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2331a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 23326d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 23336d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2334a30f8f8cSSatish Balay 23356d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 23366d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2337a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2338a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2339a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2340a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2341a30f8f8cSSatish Balay matrices. 2342a30f8f8cSSatish Balay 2343a30f8f8cSSatish Balay Level: intermediate 2344a30f8f8cSSatish Balay 2345a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2346a30f8f8cSSatish Balay 234769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2348a30f8f8cSSatish Balay @*/ 2349a30f8f8cSSatish Balay 235069b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2351a30f8f8cSSatish Balay { 23526849ba73SBarry Smith PetscErrorCode ierr; 23531302d50aSBarry Smith PetscMPIInt size; 2354a30f8f8cSSatish Balay 2355a30f8f8cSSatish Balay PetscFunctionBegin; 2356f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2357f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2358273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2359273d9f13SBarry Smith if (size > 1) { 2360b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2361b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2362273d9f13SBarry Smith } else { 2363273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2364273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2365273d9f13SBarry Smith } 2366a30f8f8cSSatish Balay PetscFunctionReturn(0); 2367a30f8f8cSSatish Balay } 2368a30f8f8cSSatish Balay 2369a30f8f8cSSatish Balay 23704a2ae208SSatish Balay #undef __FUNCT__ 23714a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 23726849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2373a30f8f8cSSatish Balay { 2374a30f8f8cSSatish Balay Mat mat; 2375a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2376dfbe8321SBarry Smith PetscErrorCode ierr; 2377d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2378387bc808SHong Zhang PetscScalar *array; 2379a30f8f8cSSatish Balay 2380a30f8f8cSSatish Balay PetscFunctionBegin; 2381a30f8f8cSSatish Balay *newmat = 0; 238226fbe8dcSKarl Rupp 2383ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2384d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 23857adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 23861d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 23871e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 23881e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2389e1b6402fSHong Zhang 2390d5f3da31SBarry Smith mat->factortype = matin->factortype; 2391273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 239282327fa8SHong Zhang mat->assembled = PETSC_TRUE; 23937fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 23947fff6886SHong Zhang 2395b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2396a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2397a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2398a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2399a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2400a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2401a30f8f8cSSatish Balay 2402899cda47SBarry Smith 2403a30f8f8cSSatish Balay a->size = oldmat->size; 2404a30f8f8cSSatish Balay a->rank = oldmat->rank; 2405a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2406a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2407a30f8f8cSSatish Balay a->rowindices = 0; 2408a30f8f8cSSatish Balay a->rowvalues = 0; 2409a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2410a30f8f8cSSatish Balay a->barray = 0; 2411899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2412899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2413899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2414899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2415a30f8f8cSSatish Balay 2416a30f8f8cSSatish Balay /* hash table stuff */ 2417a30f8f8cSSatish Balay a->ht = 0; 2418a30f8f8cSSatish Balay a->hd = 0; 2419a30f8f8cSSatish Balay a->ht_size = 0; 2420a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2421a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2422a30f8f8cSSatish Balay a->ht_total_ct = 0; 2423a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2424a30f8f8cSSatish Balay 2425899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2426a30f8f8cSSatish Balay if (oldmat->colmap) { 2427a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2428a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2429a30f8f8cSSatish Balay #else 2430854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 24313bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 24321302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2433a30f8f8cSSatish Balay #endif 2434a30f8f8cSSatish Balay } else a->colmap = 0; 2435387bc808SHong Zhang 2436a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2437785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 24383bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 24391302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2440a30f8f8cSSatish Balay } else a->garray = 0; 2441a30f8f8cSSatish Balay 2442ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2443a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 24443bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2445a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 24463bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 244782327fa8SHong Zhang 244882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 24493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 245082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 24513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2452387bc808SHong Zhang 2453387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 24541ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2455778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2456778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 24571ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 24581ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2459778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 24601ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 24613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 24623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 24633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 24643bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 24653bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2466387bc808SHong Zhang 2467387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2468387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2469387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 24703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 247182327fa8SHong Zhang 2472a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24733bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2474a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 24753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2476140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2477a30f8f8cSSatish Balay *newmat = mat; 2478a30f8f8cSSatish Balay PetscFunctionReturn(0); 2479a30f8f8cSSatish Balay } 2480a30f8f8cSSatish Balay 24814a2ae208SSatish Balay #undef __FUNCT__ 24825bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2483112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 248495936485SShri Abhyankar { 248595936485SShri Abhyankar PetscErrorCode ierr; 248695936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 248795936485SShri Abhyankar PetscScalar *vals,*buf; 2488ce94432eSBarry Smith MPI_Comm comm; 248995936485SShri Abhyankar MPI_Status status; 2490adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2491adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 249295936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 24933059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 249495936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 249595936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 249695936485SShri Abhyankar int fd; 249795936485SShri Abhyankar 249895936485SShri Abhyankar PetscFunctionBegin; 2499c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2500c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2501ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 25020298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 25030298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 250495936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 25053059b6faSBarry Smith if (bs < 0) bs = 1; 250695936485SShri Abhyankar 250795936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 250895936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 250995936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 25105872f025SBarry Smith if (!rank) { 251195936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 251295936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 251395936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 251495936485SShri Abhyankar } 251595936485SShri Abhyankar 251695936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 251795936485SShri Abhyankar 251895936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 251926fbe8dcSKarl Rupp M = header[1]; 252026fbe8dcSKarl Rupp N = header[2]; 252195936485SShri Abhyankar 252295936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 252395936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 252495936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 252595936485SShri Abhyankar 252695936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 252795936485SShri Abhyankar if (sizesset) { 252895936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 252995936485SShri Abhyankar } 2530abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2531abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 253295936485SShri Abhyankar 253395936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 253495936485SShri Abhyankar 253595936485SShri Abhyankar /* 253695936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 253795936485SShri Abhyankar divisible by the blocksize 253895936485SShri Abhyankar */ 253995936485SShri Abhyankar Mbs = M/bs; 254095936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 254195936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 254295936485SShri Abhyankar else Mbs++; 254395936485SShri Abhyankar if (extra_rows &&!rank) { 254495936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 254595936485SShri Abhyankar } 254695936485SShri Abhyankar 254795936485SShri Abhyankar /* determine ownership of all rows */ 254895936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 254995936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 255095936485SShri Abhyankar m = mbs*bs; 255195936485SShri Abhyankar } else { /* User Set */ 255295936485SShri Abhyankar m = newmat->rmap->n; 255395936485SShri Abhyankar mbs = m/bs; 255495936485SShri Abhyankar } 2555dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 25564dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 255795936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 255895936485SShri Abhyankar rowners[0] = 0; 255995936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 256095936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 256195936485SShri Abhyankar rstart = rowners[rank]; 256295936485SShri Abhyankar rend = rowners[rank+1]; 256395936485SShri Abhyankar 256495936485SShri Abhyankar /* distribute row lengths to all processors */ 2565785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 256695936485SShri Abhyankar if (!rank) { 2567854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 256895936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 256995936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2570785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 257195936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 257295936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 257395936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 257495936485SShri Abhyankar } else { 257595936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 257695936485SShri Abhyankar } 257795936485SShri Abhyankar 257895936485SShri Abhyankar if (!rank) { /* procs[0] */ 257995936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2580785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 258195936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 258295936485SShri Abhyankar for (i=0; i<size; i++) { 258395936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 258495936485SShri Abhyankar procsnz[i] += rowlengths[j]; 258595936485SShri Abhyankar } 258695936485SShri Abhyankar } 258795936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 258895936485SShri Abhyankar 258995936485SShri Abhyankar /* determine max buffer needed and allocate it */ 259095936485SShri Abhyankar maxnz = 0; 259195936485SShri Abhyankar for (i=0; i<size; i++) { 259295936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 259395936485SShri Abhyankar } 2594785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 259595936485SShri Abhyankar 259695936485SShri Abhyankar /* read in my part of the matrix column indices */ 259795936485SShri Abhyankar nz = procsnz[0]; 2598785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 259995936485SShri Abhyankar mycols = ibuf; 260095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 260195936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 260226fbe8dcSKarl Rupp if (size == 1) { 260326fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 260426fbe8dcSKarl Rupp } 260595936485SShri Abhyankar 260695936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 260795936485SShri Abhyankar for (i=1; i<size-1; i++) { 260895936485SShri Abhyankar nz = procsnz[i]; 260995936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 261095936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 261195936485SShri Abhyankar } 261295936485SShri Abhyankar /* read in the stuff for the last proc */ 261395936485SShri Abhyankar if (size != 1) { 261495936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 261595936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 261695936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 261795936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 261895936485SShri Abhyankar } 261995936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 262095936485SShri Abhyankar } else { /* procs[i], i>0 */ 262195936485SShri Abhyankar /* determine buffer space needed for message */ 262295936485SShri Abhyankar nz = 0; 262326fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2624785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 262595936485SShri Abhyankar mycols = ibuf; 262695936485SShri Abhyankar /* receive message of column indices*/ 262795936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 262895936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 262995936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 263095936485SShri Abhyankar } 263195936485SShri Abhyankar 263295936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2633dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2634dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 263595936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263695936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263795936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 263895936485SShri Abhyankar rowcount = 0; 263995936485SShri Abhyankar nzcount = 0; 264095936485SShri Abhyankar for (i=0; i<mbs; i++) { 264195936485SShri Abhyankar dcount = 0; 264295936485SShri Abhyankar odcount = 0; 264395936485SShri Abhyankar for (j=0; j<bs; j++) { 264495936485SShri Abhyankar kmax = locrowlens[rowcount]; 264595936485SShri Abhyankar for (k=0; k<kmax; k++) { 264695936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 264795936485SShri Abhyankar if (!mask[tmp]) { 264895936485SShri Abhyankar mask[tmp] = 1; 264995936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 265095936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 265195936485SShri Abhyankar } 265295936485SShri Abhyankar } 265395936485SShri Abhyankar rowcount++; 265495936485SShri Abhyankar } 265595936485SShri Abhyankar 265695936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 265795936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 265895936485SShri Abhyankar 265995936485SShri Abhyankar /* zero out the mask elements we set */ 266095936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 266195936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 266295936485SShri Abhyankar } 266395936485SShri Abhyankar if (!sizesset) { 266495936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 266595936485SShri Abhyankar } 266695936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 26676816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 266895936485SShri Abhyankar 266995936485SShri Abhyankar if (!rank) { 2670785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 267195936485SShri Abhyankar /* read in my part of the matrix numerical values */ 267295936485SShri Abhyankar nz = procsnz[0]; 267395936485SShri Abhyankar vals = buf; 267495936485SShri Abhyankar mycols = ibuf; 267595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 267695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 267726fbe8dcSKarl Rupp if (size == 1) { 267826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 267926fbe8dcSKarl Rupp } 268095936485SShri Abhyankar 268195936485SShri Abhyankar /* insert into matrix */ 268295936485SShri Abhyankar jj = rstart*bs; 268395936485SShri Abhyankar for (i=0; i<m; i++) { 268495936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 268595936485SShri Abhyankar mycols += locrowlens[i]; 268695936485SShri Abhyankar vals += locrowlens[i]; 268795936485SShri Abhyankar jj++; 268895936485SShri Abhyankar } 268995936485SShri Abhyankar 269095936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 269195936485SShri Abhyankar for (i=1; i<size-1; i++) { 269295936485SShri Abhyankar nz = procsnz[i]; 269395936485SShri Abhyankar vals = buf; 269495936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 269595936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 269695936485SShri Abhyankar } 269795936485SShri Abhyankar /* the last proc */ 269895936485SShri Abhyankar if (size != 1) { 269995936485SShri Abhyankar nz = procsnz[i] - extra_rows; 270095936485SShri Abhyankar vals = buf; 270195936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 270295936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 270395936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 270495936485SShri Abhyankar } 270595936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 270695936485SShri Abhyankar 270795936485SShri Abhyankar } else { 270895936485SShri Abhyankar /* receive numeric values */ 2709785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 271095936485SShri Abhyankar 271195936485SShri Abhyankar /* receive message of values*/ 271295936485SShri Abhyankar vals = buf; 271395936485SShri Abhyankar mycols = ibuf; 271495936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 271595936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 271695936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 271795936485SShri Abhyankar 271895936485SShri Abhyankar /* insert into matrix */ 271995936485SShri Abhyankar jj = rstart*bs; 272095936485SShri Abhyankar for (i=0; i<m; i++) { 272195936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 272295936485SShri Abhyankar mycols += locrowlens[i]; 272395936485SShri Abhyankar vals += locrowlens[i]; 272495936485SShri Abhyankar jj++; 272595936485SShri Abhyankar } 272695936485SShri Abhyankar } 272795936485SShri Abhyankar 272895936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 272995936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 273095936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 273195936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 273295936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 273395936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 273495936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 273595936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 273695936485SShri Abhyankar PetscFunctionReturn(0); 273795936485SShri Abhyankar } 273895936485SShri Abhyankar 273995936485SShri Abhyankar #undef __FUNCT__ 27404a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2741dcf5cc72SBarry Smith /*XXXXX@ 2742a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2743a30f8f8cSSatish Balay 2744a30f8f8cSSatish Balay Input Parameters: 2745a30f8f8cSSatish Balay . mat - the matrix 2746a30f8f8cSSatish Balay . fact - factor 2747a30f8f8cSSatish Balay 2748c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2749a30f8f8cSSatish Balay 2750a30f8f8cSSatish Balay Level: advanced 2751a30f8f8cSSatish Balay 2752a30f8f8cSSatish Balay Notes: 2753a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2754a30f8f8cSSatish Balay 2755a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2756a30f8f8cSSatish Balay 2757a30f8f8cSSatish Balay .seealso: MatSetOption() 2758dcf5cc72SBarry Smith @XXXXX*/ 2759dcf5cc72SBarry Smith 276024d5174aSHong Zhang 27614a2ae208SSatish Balay #undef __FUNCT__ 2762985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2763985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 276424d5174aSHong Zhang { 276524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2766f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2767ca54ac64SHong Zhang PetscReal atmp; 276887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2769dfbe8321SBarry Smith PetscErrorCode ierr; 27701302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 27711302d50aSBarry Smith PetscMPIInt rank,size; 27721302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 277387828ca2SBarry Smith PetscScalar *va; 27748a1c53f2SBarry Smith MatScalar *ba; 2775f4c0e9e4SHong Zhang MPI_Status stat; 277624d5174aSHong Zhang 277724d5174aSHong Zhang PetscFunctionBegin; 2778e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 27790298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 27801ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2781f4c0e9e4SHong Zhang 2782ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2783ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2784f4c0e9e4SHong Zhang 2785d0f46423SBarry Smith bs = A->rmap->bs; 2786f4c0e9e4SHong Zhang mbs = a->mbs; 2787f4c0e9e4SHong Zhang Mbs = a->Mbs; 2788f4c0e9e4SHong Zhang ba = b->a; 2789f4c0e9e4SHong Zhang bi = b->i; 2790f4c0e9e4SHong Zhang bj = b->j; 2791f4c0e9e4SHong Zhang 2792f4c0e9e4SHong Zhang /* find ownerships */ 2793d0f46423SBarry Smith rowners_bs = A->rmap->range; 2794f4c0e9e4SHong Zhang 2795f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2796785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2797ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2798f4c0e9e4SHong Zhang 2799f4c0e9e4SHong Zhang /* row_max for B */ 2800b8475685SHong Zhang if (rank != size-1) { 2801f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2802f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2803f4c0e9e4SHong Zhang brow = bs*i; 2804f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2805f4c0e9e4SHong Zhang bcol = bs*(*bj); 2806f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2807ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 280804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2809f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2810f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2811ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2812ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2813f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2814f4c0e9e4SHong Zhang } 2815f4c0e9e4SHong Zhang } 2816f4c0e9e4SHong Zhang bj++; 2817f4c0e9e4SHong Zhang } 2818f4c0e9e4SHong Zhang } 2819f4c0e9e4SHong Zhang 2820f4c0e9e4SHong Zhang /* send values to its owners */ 2821f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2822f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2823ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2824ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2825ca54ac64SHong Zhang } 2826f4c0e9e4SHong Zhang } 2827f4c0e9e4SHong Zhang 2828f4c0e9e4SHong Zhang /* receive values */ 2829ca54ac64SHong Zhang if (rank) { 2830f4c0e9e4SHong Zhang rvalues = work; 2831ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2832f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2833ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2834f4c0e9e4SHong Zhang /* process values */ 2835f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2836ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2837f4c0e9e4SHong Zhang } 2838f4c0e9e4SHong Zhang } 2839ca54ac64SHong Zhang } 2840f4c0e9e4SHong Zhang 28411ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2842ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 284324d5174aSHong Zhang PetscFunctionReturn(0); 284424d5174aSHong Zhang } 28452798e883SHong Zhang 28462798e883SHong Zhang #undef __FUNCT__ 284741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 284841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 28492798e883SHong Zhang { 28502798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2851dfbe8321SBarry Smith PetscErrorCode ierr; 2852d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 28533649974fSBarry Smith PetscScalar *x,*ptr,*from; 2854ffe4fb16SHong Zhang Vec bb1; 28553649974fSBarry Smith const PetscScalar *b; 2856ffe4fb16SHong Zhang 2857ffe4fb16SHong Zhang PetscFunctionBegin; 2858e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2859e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2860ffe4fb16SHong Zhang 2861a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 286241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2863a2b30743SBarry Smith PetscFunctionReturn(0); 2864a2b30743SBarry Smith } 2865a2b30743SBarry Smith 2866ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2867ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 286841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2869ffe4fb16SHong Zhang its--; 2870ffe4fb16SHong Zhang } 2871ffe4fb16SHong Zhang 2872ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2873ffe4fb16SHong Zhang while (its--) { 2874ffe4fb16SHong Zhang 2875ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2876ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2877ffe4fb16SHong Zhang 2878ffe4fb16SHong Zhang /* copy xx into slvec0a */ 28791ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 28801ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2881ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28821ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2883ffe4fb16SHong Zhang 2884efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2885ffe4fb16SHong Zhang 2886ffe4fb16SHong Zhang /* copy bb into slvec1a */ 28871ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 28883649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2889ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 28901ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2891ffe4fb16SHong Zhang 2892ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2893fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2894ffe4fb16SHong Zhang 2895ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 28961ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2897a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2898ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2899ffe4fb16SHong Zhang 2900ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2901ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2902ffe4fb16SHong Zhang 2903ffe4fb16SHong Zhang /* local diagonal sweep */ 290441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2905ffe4fb16SHong Zhang } 29066bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2907fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 290841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2909fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 291041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2911fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2912fa22f6d0SBarry Smith Vec xx1; 2913ace3abfcSBarry Smith PetscBool hasop; 291420f1ed55SBarry Smith const PetscScalar *diag; 2915887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 291620f1ed55SBarry Smith PetscInt i,n; 2917fa22f6d0SBarry Smith 2918fa22f6d0SBarry Smith if (!mat->xx1) { 2919fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2920fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2921fa22f6d0SBarry Smith } 2922fa22f6d0SBarry Smith xx1 = mat->xx1; 2923fa22f6d0SBarry Smith bb1 = mat->bb1; 2924fa22f6d0SBarry Smith 292541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2926fa22f6d0SBarry Smith 2927fa22f6d0SBarry Smith if (!mat->diag) { 2928effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 29292a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2930fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2931fa22f6d0SBarry Smith } 2932fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2933fa22f6d0SBarry Smith 2934fa22f6d0SBarry Smith if (hasop) { 2935fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2936887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 293720f1ed55SBarry Smith } else { 293820f1ed55SBarry Smith /* 293920f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 294020f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2941887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 294220f1ed55SBarry Smith */ 294320f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29443649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29453649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 294620f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 294720f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2948887ee2caSBarry Smith if (omega == 1.0) { 294926fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 295020f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2951887ee2caSBarry Smith } else { 295226fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2953887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2954887ee2caSBarry Smith } 295520f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 29563649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 29573649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 295820f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 295920f1ed55SBarry Smith } 2960fa22f6d0SBarry Smith 2961fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2962fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2963fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2964fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2965fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2966fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2967fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2968fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2969fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2970fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2971effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2972fa22f6d0SBarry Smith 2973fa22f6d0SBarry Smith /* local sweep */ 297441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2975fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2976f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2977ffe4fb16SHong Zhang PetscFunctionReturn(0); 2978ffe4fb16SHong Zhang } 2979ffe4fb16SHong Zhang 2980ffe4fb16SHong Zhang #undef __FUNCT__ 298141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 298241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2983ffe4fb16SHong Zhang { 2984ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2985dfbe8321SBarry Smith PetscErrorCode ierr; 29862798e883SHong Zhang Vec lvec1,bb1; 29872798e883SHong Zhang 29882798e883SHong Zhang PetscFunctionBegin; 2989e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2990e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 29912798e883SHong Zhang 2992c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 29932798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 299441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 29952798e883SHong Zhang its--; 29962798e883SHong Zhang } 29972798e883SHong Zhang 29982798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 29992798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 30002798e883SHong Zhang while (its--) { 3001ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30022798e883SHong Zhang 30032798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 30042798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3005efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 30062798e883SHong Zhang 3007ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 30082798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3009ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30102798e883SHong Zhang 30112798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3012efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 30132798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 30142798e883SHong Zhang 3015ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 30162798e883SHong Zhang 3017c14dc6b6SHong Zhang /* diagonal sweep */ 301841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 30192798e883SHong Zhang } 30206bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 30216bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 30226bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 30232798e883SHong Zhang PetscFunctionReturn(0); 30242798e883SHong Zhang } 30252798e883SHong Zhang 3026dfb205c3SBarry Smith #undef __FUNCT__ 3027dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 3028dfb205c3SBarry Smith /*@ 3029dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3030dfb205c3SBarry Smith CSR format the local rows. 3031dfb205c3SBarry Smith 3032dfb205c3SBarry Smith Collective on MPI_Comm 3033dfb205c3SBarry Smith 3034dfb205c3SBarry Smith Input Parameters: 3035dfb205c3SBarry Smith + comm - MPI communicator 3036dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3037dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3038dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3039dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3040dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3041dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3042dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3043dfb205c3SBarry Smith . i - row indices 3044dfb205c3SBarry Smith . j - column indices 3045dfb205c3SBarry Smith - a - matrix values 3046dfb205c3SBarry Smith 3047dfb205c3SBarry Smith Output Parameter: 3048dfb205c3SBarry Smith . mat - the matrix 3049dfb205c3SBarry Smith 3050dfb205c3SBarry Smith Level: intermediate 3051dfb205c3SBarry Smith 3052dfb205c3SBarry Smith Notes: 3053dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3054dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3055dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3056dfb205c3SBarry Smith 3057dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3058dfb205c3SBarry Smith 3059dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3060dfb205c3SBarry Smith 3061dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 306269b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3063dfb205c3SBarry Smith @*/ 30647087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3065dfb205c3SBarry Smith { 3066dfb205c3SBarry Smith PetscErrorCode ierr; 3067dfb205c3SBarry Smith 3068dfb205c3SBarry Smith 3069dfb205c3SBarry Smith PetscFunctionBegin; 3070f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3071dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3072dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3073dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3074dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3075dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3076dfb205c3SBarry Smith PetscFunctionReturn(0); 3077dfb205c3SBarry Smith } 3078dfb205c3SBarry Smith 3079dfb205c3SBarry Smith 3080dfb205c3SBarry Smith #undef __FUNCT__ 3081dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 3082dfb205c3SBarry Smith /*@C 3083dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 3084dfb205c3SBarry Smith (the default parallel PETSc format). 3085dfb205c3SBarry Smith 3086dfb205c3SBarry Smith Collective on MPI_Comm 3087dfb205c3SBarry Smith 3088dfb205c3SBarry Smith Input Parameters: 30891c4f3114SJed Brown + B - the matrix 3090dfb205c3SBarry Smith . bs - the block size 3091dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3092dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3093dfb205c3SBarry Smith - v - optional values in the matrix 3094dfb205c3SBarry Smith 3095dfb205c3SBarry Smith Level: developer 3096dfb205c3SBarry Smith 3097dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3098dfb205c3SBarry Smith 309969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3100dfb205c3SBarry Smith @*/ 31017087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3102dfb205c3SBarry Smith { 31034ac538c5SBarry Smith PetscErrorCode ierr; 3104dfb205c3SBarry Smith 3105dfb205c3SBarry Smith PetscFunctionBegin; 31064ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3107dfb205c3SBarry Smith PetscFunctionReturn(0); 3108dfb205c3SBarry Smith } 3109dfb205c3SBarry Smith 3110de4b53ebSHong Zhang #undef __FUNCT__ 311110c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 311210c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 31134dcd73b1SHong Zhang { 31144dcd73b1SHong Zhang PetscErrorCode ierr; 311510c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 311610c56fdeSHong Zhang PetscInt *indx; 311710c56fdeSHong Zhang PetscScalar *values; 3118dfb205c3SBarry Smith 31194dcd73b1SHong Zhang PetscFunctionBegin; 31204dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 312110c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 312210c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 312310c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 312410c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 31254dcd73b1SHong Zhang 312610c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 312710c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 312810c56fdeSHong Zhang if (n == PETSC_DECIDE) { 312910c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 313010c56fdeSHong Zhang } 313110c56fdeSHong Zhang /* Check sum(n) = Nbs */ 313210c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 313310c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 313410c56fdeSHong Zhang 313510c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 313610c56fdeSHong Zhang rstart -= mbs; 31374dcd73b1SHong Zhang 31384dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 313910c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 3140e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 314110c56fdeSHong Zhang for (i=0; i<mbs; i++) { 31424dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 31434dcd73b1SHong Zhang nnz = nnz/bs; 31444dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 31454dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 31464dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 31474dcd73b1SHong Zhang } 3148e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 31494dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 31504dcd73b1SHong Zhang 31514dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 315210c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 31534dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 31544dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 31554dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 31564dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 31574dcd73b1SHong Zhang } 31584dcd73b1SHong Zhang 315910c56fdeSHong Zhang /* numeric phase */ 31604dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 316110c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 31624dcd73b1SHong Zhang 3163e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 31644dcd73b1SHong Zhang for (i=0; i<m; i++) { 31654dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31664dcd73b1SHong Zhang Ii = i + rstart; 316710c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 31684dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 31694dcd73b1SHong Zhang } 3170e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 317110c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 317210c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31734dcd73b1SHong Zhang PetscFunctionReturn(0); 31744dcd73b1SHong Zhang } 3175