xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 7f489da91baee7cfbedb679c2d7b0bca5dd3dd5b)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
107087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
11a30f8f8cSSatish Balay {
12f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
13dfbe8321SBarry Smith   PetscErrorCode ierr;
14a30f8f8cSSatish Balay 
15a30f8f8cSSatish Balay   PetscFunctionBegin;
16a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
17a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
18a30f8f8cSSatish Balay   PetscFunctionReturn(0);
19a30f8f8cSSatish Balay }
20a30f8f8cSSatish Balay 
217087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
22a30f8f8cSSatish Balay {
23f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
24dfbe8321SBarry Smith   PetscErrorCode ierr;
25a30f8f8cSSatish Balay 
26a30f8f8cSSatish Balay   PetscFunctionBegin;
27a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
28a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
29a30f8f8cSSatish Balay   PetscFunctionReturn(0);
30a30f8f8cSSatish Balay }
31a30f8f8cSSatish Balay 
32d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
33a30f8f8cSSatish Balay   { \
34a30f8f8cSSatish Balay  \
35a30f8f8cSSatish Balay     brow = row/bs;  \
36a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
37a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
38a30f8f8cSSatish Balay     bcol = col/bs; \
39a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
40a30f8f8cSSatish Balay     low  = 0; high = nrow; \
41a30f8f8cSSatish Balay     while (high-low > 3) { \
42a30f8f8cSSatish Balay       t = (low+high)/2; \
43a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
44a30f8f8cSSatish Balay       else              low  = t; \
45a30f8f8cSSatish Balay     } \
46a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
47a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
48a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
49a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
50a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
51a30f8f8cSSatish Balay         else                    *bap  = value;  \
52a30f8f8cSSatish Balay         goto a_noinsert; \
53a30f8f8cSSatish Balay       } \
54a30f8f8cSSatish Balay     } \
55a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
56d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
57fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
58a30f8f8cSSatish Balay     N = nrow++ - 1;  \
59a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
60a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
61a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
62a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
63a30f8f8cSSatish Balay     } \
64a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
65a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
66a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
67e56f5c9eSBarry Smith     A->nonzerostate++;\
68a30f8f8cSSatish Balay a_noinsert:; \
69a30f8f8cSSatish Balay     ailen[brow] = nrow; \
70a30f8f8cSSatish Balay   }
71e5e170daSBarry Smith 
72d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
73a30f8f8cSSatish Balay   { \
74a30f8f8cSSatish Balay     brow = row/bs;  \
75a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
76a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
77a30f8f8cSSatish Balay     bcol = col/bs; \
78a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
79a30f8f8cSSatish Balay     low  = 0; high = nrow; \
80a30f8f8cSSatish Balay     while (high-low > 3) { \
81a30f8f8cSSatish Balay       t = (low+high)/2; \
82a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
83a30f8f8cSSatish Balay       else              low  = t; \
84a30f8f8cSSatish Balay     } \
85a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
86a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
87a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
88a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
89a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
90a30f8f8cSSatish Balay         else                    *bap  = value;  \
91a30f8f8cSSatish Balay         goto b_noinsert; \
92a30f8f8cSSatish Balay       } \
93a30f8f8cSSatish Balay     } \
94a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
95d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
96fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
97a30f8f8cSSatish Balay     N = nrow++ - 1;  \
98a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
99a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
100a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
101a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
102a30f8f8cSSatish Balay     } \
103a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
104a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
105a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
106e56f5c9eSBarry Smith     B->nonzerostate++;\
107a30f8f8cSSatish Balay b_noinsert:; \
108a30f8f8cSSatish Balay     bilen[brow] = nrow; \
109a30f8f8cSSatish Balay   }
110a30f8f8cSSatish Balay 
111a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
112a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
113a30f8f8cSSatish Balay */
114dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
115a30f8f8cSSatish Balay {
116a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
117a30f8f8cSSatish Balay   MatScalar      value;
118ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
119dfbe8321SBarry Smith   PetscErrorCode ierr;
1201302d50aSBarry Smith   PetscInt       i,j,row,col;
121d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
122d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
123d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
124a30f8f8cSSatish Balay 
125a30f8f8cSSatish Balay   /* Some Variables required in the macro */
126a30f8f8cSSatish Balay   Mat          A     = baij->A;
127a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1281302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
129a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay   Mat         B     = baij->B;
132a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1331302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
134a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
135a30f8f8cSSatish Balay 
1361302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1371302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
138a30f8f8cSSatish Balay   MatScalar *ap,*bap;
139a30f8f8cSSatish Balay 
140a30f8f8cSSatish Balay   /* for stash */
1410298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1420298fd71SBarry Smith   MatScalar *v_loc = NULL;
143a30f8f8cSSatish Balay 
144a30f8f8cSSatish Balay   PetscFunctionBegin;
145a30f8f8cSSatish Balay   if (!baij->donotstash) {
14659ffdab8SBarry Smith     if (n > baij->n_loc) {
14759ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
14859ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
149785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
150785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
15126fbe8dcSKarl Rupp 
15259ffdab8SBarry Smith       baij->n_loc = n;
15359ffdab8SBarry Smith     }
15459ffdab8SBarry Smith     in_loc = baij->in_loc;
15559ffdab8SBarry Smith     v_loc  = baij->v_loc;
156a30f8f8cSSatish Balay   }
157a30f8f8cSSatish Balay 
158a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
159a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1602515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
161e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
162a30f8f8cSSatish Balay #endif
163a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
164a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
165a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
16601b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
16701b2bd88SHong Zhang           if (a->ignore_ltriangular) {
16801b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
16926fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
17001b2bd88SHong Zhang         }
171a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
172a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
173a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
174a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
175db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
176db4deed7SKarl Rupp           else             value = v[i+j*m];
177d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
178a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
179a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
1802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
181cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
182a30f8f8cSSatish Balay #endif
183a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
184a30f8f8cSSatish Balay           if (mat->was_assembled) {
185a30f8f8cSSatish Balay             if (!baij->colmap) {
186ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
187a30f8f8cSSatish Balay             }
188a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
189a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
19071730473SSatish Balay             col  = col - 1;
191a30f8f8cSSatish Balay #else
19271730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
193a30f8f8cSSatish Balay #endif
194a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
195ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
196a30f8f8cSSatish Balay               col  =  in[j];
197a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
198a30f8f8cSSatish Balay               B    = baij->B;
199a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
200a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
201a30f8f8cSSatish Balay               ba   = b->a;
20271730473SSatish Balay             } else col += in[j]%bs;
203a30f8f8cSSatish Balay           } else col = in[j];
204db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
205db4deed7SKarl Rupp           else             value = v[i+j*m];
206d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
207a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
208a30f8f8cSSatish Balay         }
209a30f8f8cSSatish Balay       }
210a30f8f8cSSatish Balay     } else {  /* off processor entry */
2114cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
212a30f8f8cSSatish Balay       if (!baij->donotstash) {
2135080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
214a30f8f8cSSatish Balay         n_loc          = 0;
215a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
216f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
217a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
218a30f8f8cSSatish Balay           if (roworiented) {
219a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
220a30f8f8cSSatish Balay           } else {
221a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
222a30f8f8cSSatish Balay           }
223a30f8f8cSSatish Balay           n_loc++;
224a30f8f8cSSatish Balay         }
225b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
226a30f8f8cSSatish Balay       }
227a30f8f8cSSatish Balay     }
228a30f8f8cSSatish Balay   }
229a30f8f8cSSatish Balay   PetscFunctionReturn(0);
230a30f8f8cSSatish Balay }
231a30f8f8cSSatish Balay 
23236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
23336bd2089SBarry Smith {
23436bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
23536bd2089SBarry Smith   PetscErrorCode    ierr;
23636bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
23736bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
23836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
23936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
24036bd2089SBarry Smith   const PetscScalar *value     = v;
24136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
24236bd2089SBarry Smith 
24336bd2089SBarry Smith   PetscFunctionBegin;
24436bd2089SBarry Smith   if (col < row) {
24536bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
24636bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
24736bd2089SBarry Smith   }
24836bd2089SBarry Smith   rp   = aj + ai[row];
24936bd2089SBarry Smith   ap   = aa + bs2*ai[row];
25036bd2089SBarry Smith   rmax = imax[row];
25136bd2089SBarry Smith   nrow = ailen[row];
25236bd2089SBarry Smith   value = v;
25336bd2089SBarry Smith   low   = 0;
25436bd2089SBarry Smith   high  = nrow;
25536bd2089SBarry Smith 
25636bd2089SBarry Smith   while (high-low > 7) {
25736bd2089SBarry Smith     t = (low+high)/2;
25836bd2089SBarry Smith     if (rp[t] > col) high = t;
25936bd2089SBarry Smith     else             low  = t;
26036bd2089SBarry Smith   }
26136bd2089SBarry Smith   for (i=low; i<high; i++) {
26236bd2089SBarry Smith     if (rp[i] > col) break;
26336bd2089SBarry Smith     if (rp[i] == col) {
26436bd2089SBarry Smith       bap = ap +  bs2*i;
26536bd2089SBarry Smith       if (roworiented) {
26636bd2089SBarry Smith         if (is == ADD_VALUES) {
26736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
26836bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
26936bd2089SBarry Smith               bap[jj] += *value++;
27036bd2089SBarry Smith             }
27136bd2089SBarry Smith           }
27236bd2089SBarry Smith         } else {
27336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
27436bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
27536bd2089SBarry Smith               bap[jj] = *value++;
27636bd2089SBarry Smith             }
27736bd2089SBarry Smith           }
27836bd2089SBarry Smith         }
27936bd2089SBarry Smith       } else {
28036bd2089SBarry Smith         if (is == ADD_VALUES) {
28136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28236bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
28336bd2089SBarry Smith               *bap++ += *value++;
28436bd2089SBarry Smith             }
28536bd2089SBarry Smith           }
28636bd2089SBarry Smith         } else {
28736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
28836bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
28936bd2089SBarry Smith               *bap++  = *value++;
29036bd2089SBarry Smith             }
29136bd2089SBarry Smith           }
29236bd2089SBarry Smith         }
29336bd2089SBarry Smith       }
29436bd2089SBarry Smith       goto noinsert2;
29536bd2089SBarry Smith     }
29636bd2089SBarry Smith   }
29736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
29836bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
29936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
30036bd2089SBarry Smith   N = nrow++ - 1; high++;
30136bd2089SBarry Smith   /* shift up all the later entries in this row */
30236bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
30336bd2089SBarry Smith     rp[ii+1] = rp[ii];
30436bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
30536bd2089SBarry Smith   }
30636bd2089SBarry Smith   if (N >= i) {
30736bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
30836bd2089SBarry Smith   }
30936bd2089SBarry Smith   rp[i] = col;
31036bd2089SBarry Smith   bap   = ap +  bs2*i;
31136bd2089SBarry Smith   if (roworiented) {
31236bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
31336bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
31436bd2089SBarry Smith         bap[jj] = *value++;
31536bd2089SBarry Smith       }
31636bd2089SBarry Smith     }
31736bd2089SBarry Smith   } else {
31836bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
31936bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
32036bd2089SBarry Smith         *bap++ = *value++;
32136bd2089SBarry Smith       }
32236bd2089SBarry Smith     }
32336bd2089SBarry Smith   }
32436bd2089SBarry Smith   noinsert2:;
32536bd2089SBarry Smith   ailen[row] = nrow;
32636bd2089SBarry Smith   PetscFunctionReturn(0);
32736bd2089SBarry Smith }
32836bd2089SBarry Smith 
32936bd2089SBarry Smith /*
33036bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
33136bd2089SBarry Smith */
33236bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
33336bd2089SBarry Smith {
33436bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
33536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
33636bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
33736bd2089SBarry Smith   PetscErrorCode    ierr;
33836bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
33936bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34036bd2089SBarry Smith   const PetscScalar *value     = v;
34136bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
34236bd2089SBarry Smith 
34336bd2089SBarry Smith   PetscFunctionBegin;
34436bd2089SBarry Smith   rp   = aj + ai[row];
34536bd2089SBarry Smith   ap   = aa + bs2*ai[row];
34636bd2089SBarry Smith   rmax = imax[row];
34736bd2089SBarry Smith   nrow = ailen[row];
34836bd2089SBarry Smith   low  = 0;
34936bd2089SBarry Smith   high = nrow;
35036bd2089SBarry Smith   value = v;
35136bd2089SBarry Smith   while (high-low > 7) {
35236bd2089SBarry Smith     t = (low+high)/2;
35336bd2089SBarry Smith     if (rp[t] > col) high = t;
35436bd2089SBarry Smith     else             low  = t;
35536bd2089SBarry Smith   }
35636bd2089SBarry Smith   for (i=low; i<high; i++) {
35736bd2089SBarry Smith     if (rp[i] > col) break;
35836bd2089SBarry Smith     if (rp[i] == col) {
35936bd2089SBarry Smith       bap = ap +  bs2*i;
36036bd2089SBarry Smith       if (roworiented) {
36136bd2089SBarry Smith         if (is == ADD_VALUES) {
36236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
36336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
36436bd2089SBarry Smith               bap[jj] += *value++;
36536bd2089SBarry Smith             }
36636bd2089SBarry Smith           }
36736bd2089SBarry Smith         } else {
36836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
36936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37036bd2089SBarry Smith               bap[jj] = *value++;
37136bd2089SBarry Smith             }
37236bd2089SBarry Smith           }
37336bd2089SBarry Smith         }
37436bd2089SBarry Smith       } else {
37536bd2089SBarry Smith         if (is == ADD_VALUES) {
37636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
37736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
37836bd2089SBarry Smith               bap[jj] += value[jj];
37936bd2089SBarry Smith             }
38036bd2089SBarry Smith             bap += bs;
38136bd2089SBarry Smith           }
38236bd2089SBarry Smith         } else {
38336bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
38436bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38536bd2089SBarry Smith               bap[jj]  = value[jj];
38636bd2089SBarry Smith             }
38736bd2089SBarry Smith             bap += bs;
38836bd2089SBarry Smith           }
38936bd2089SBarry Smith         }
39036bd2089SBarry Smith       }
39136bd2089SBarry Smith       goto noinsert2;
39236bd2089SBarry Smith     }
39336bd2089SBarry Smith   }
39436bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
39536bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
39636bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
39736bd2089SBarry Smith   N = nrow++ - 1; high++;
39836bd2089SBarry Smith   /* shift up all the later entries in this row */
39936bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
40036bd2089SBarry Smith     rp[ii+1] = rp[ii];
40136bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
40236bd2089SBarry Smith   }
40336bd2089SBarry Smith   if (N >= i) {
40436bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
40536bd2089SBarry Smith   }
40636bd2089SBarry Smith   rp[i] = col;
40736bd2089SBarry Smith   bap   = ap +  bs2*i;
40836bd2089SBarry Smith   if (roworiented) {
40936bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41036bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41136bd2089SBarry Smith         bap[jj] = *value++;
41236bd2089SBarry Smith       }
41336bd2089SBarry Smith     }
41436bd2089SBarry Smith   } else {
41536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41636bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
41736bd2089SBarry Smith         *bap++ = *value++;
41836bd2089SBarry Smith       }
41936bd2089SBarry Smith     }
42036bd2089SBarry Smith   }
42136bd2089SBarry Smith   noinsert2:;
42236bd2089SBarry Smith   ailen[row] = nrow;
42336bd2089SBarry Smith   PetscFunctionReturn(0);
42436bd2089SBarry Smith }
42536bd2089SBarry Smith 
42636bd2089SBarry Smith /*
42736bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
42836bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
42936bd2089SBarry Smith */
430dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
431a30f8f8cSSatish Balay {
4320880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
433f15d580aSBarry Smith   const MatScalar *value;
434f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
435ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
436dfbe8321SBarry Smith   PetscErrorCode  ierr;
437899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
438899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
439d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
4400880e062SHong Zhang 
441a30f8f8cSSatish Balay   PetscFunctionBegin;
4420880e062SHong Zhang   if (!barray) {
443785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
4440880e062SHong Zhang     baij->barray = barray;
4450880e062SHong Zhang   }
4460880e062SHong Zhang 
4470880e062SHong Zhang   if (roworiented) {
4480880e062SHong Zhang     stepval = (n-1)*bs;
4490880e062SHong Zhang   } else {
4500880e062SHong Zhang     stepval = (m-1)*bs;
4510880e062SHong Zhang   }
4520880e062SHong Zhang   for (i=0; i<m; i++) {
4530880e062SHong Zhang     if (im[i] < 0) continue;
4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
455bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
4560880e062SHong Zhang #endif
4570880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4580880e062SHong Zhang       row = im[i] - rstart;
4590880e062SHong Zhang       for (j=0; j<n; j++) {
460f3f98c53SJed Brown         if (im[i] > in[j]) {
461f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
462e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
463f3f98c53SJed Brown         }
4640880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4650880e062SHong Zhang         if ((roworiented) && (n == 1)) {
466f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4670880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
468f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4690880e062SHong Zhang         } else { /* Here a copy is required */
4700880e062SHong Zhang           if (roworiented) {
4710880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4720880e062SHong Zhang           } else {
4730880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4740880e062SHong Zhang           }
4750880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4760880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4770880e062SHong Zhang               *barray++ = *value++;
4780880e062SHong Zhang             }
4790880e062SHong Zhang           }
4800880e062SHong Zhang           barray -=bs2;
4810880e062SHong Zhang         }
4820880e062SHong Zhang 
4830880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
4840880e062SHong Zhang           col  = in[j] - cstart;
48536bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
48626fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
488bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
4890880e062SHong Zhang #endif
4900880e062SHong Zhang         else {
4910880e062SHong Zhang           if (mat->was_assembled) {
4920880e062SHong Zhang             if (!baij->colmap) {
493ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
4940880e062SHong Zhang             }
4950880e062SHong Zhang 
4962515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
4970880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
4981302d50aSBarry Smith             { PetscInt data;
4990880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
500e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5010880e062SHong Zhang             }
5020880e062SHong Zhang #else
503e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5040880e062SHong Zhang #endif
5050880e062SHong Zhang #endif
5060880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5070880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5080880e062SHong Zhang             col  = (col - 1)/bs;
5090880e062SHong Zhang #else
5100880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5110880e062SHong Zhang #endif
5120880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
513ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5140880e062SHong Zhang               col  = in[j];
5150880e062SHong Zhang             }
51626fbe8dcSKarl Rupp           } else col = in[j];
51736bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
5180880e062SHong Zhang         }
5190880e062SHong Zhang       }
5200880e062SHong Zhang     } else {
521bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
5220880e062SHong Zhang       if (!baij->donotstash) {
5230880e062SHong Zhang         if (roworiented) {
5240880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5250880e062SHong Zhang         } else {
5260880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5270880e062SHong Zhang         }
5280880e062SHong Zhang       }
5290880e062SHong Zhang     }
5300880e062SHong Zhang   }
5310880e062SHong Zhang   PetscFunctionReturn(0);
532a30f8f8cSSatish Balay }
533a30f8f8cSSatish Balay 
5341302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
535a30f8f8cSSatish Balay {
536f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
5376849ba73SBarry Smith   PetscErrorCode ierr;
538d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
539d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
540a30f8f8cSSatish Balay 
541a30f8f8cSSatish Balay   PetscFunctionBegin;
542a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
543e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
544e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
545a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
546a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
547a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
548e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
549e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
550a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
551a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
552c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
553a30f8f8cSSatish Balay         } else {
554a30f8f8cSSatish Balay           if (!baij->colmap) {
555ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
556a30f8f8cSSatish Balay           }
557a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
558a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
559a30f8f8cSSatish Balay           data--;
560a30f8f8cSSatish Balay #else
561a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
562a30f8f8cSSatish Balay #endif
563a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
564a30f8f8cSSatish Balay           else {
565a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
566e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
567a30f8f8cSSatish Balay           }
568a30f8f8cSSatish Balay         }
569a30f8f8cSSatish Balay       }
570f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay   PetscFunctionReturn(0);
573a30f8f8cSSatish Balay }
574a30f8f8cSSatish Balay 
575dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
576a30f8f8cSSatish Balay {
577a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
578dfbe8321SBarry Smith   PetscErrorCode ierr;
579a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
580a30f8f8cSSatish Balay 
581a30f8f8cSSatish Balay   PetscFunctionBegin;
582a30f8f8cSSatish Balay   if (baij->size == 1) {
583a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
584a30f8f8cSSatish Balay   } else {
585a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
586785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
587a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
588a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
589a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
590a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
591b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
5928f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
593a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
5940b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
5950b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
5960b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
5970b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
598899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
599d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6000b8dc8d2SHong Zhang       MatScalar    *v;
6010b8dc8d2SHong Zhang 
602dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
603d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6040b8dc8d2SHong Zhang       /* Amat */
6050b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
6060b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6070b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6080b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
6090b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6100b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
6110b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6120b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6130b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6140b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6150b8dc8d2SHong Zhang               /* non-diagonal block */
6160b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
6170b8dc8d2SHong Zhang             }
6180b8dc8d2SHong Zhang           }
6190b8dc8d2SHong Zhang         }
62051f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
6210b8dc8d2SHong Zhang       }
6220b8dc8d2SHong Zhang       /* Bmat */
6230b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
6240b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
6250b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
6260b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
6270b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
6280b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
6290b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
6300b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
6310b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
6320b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
6330b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
6340b8dc8d2SHong Zhang             }
6350b8dc8d2SHong Zhang           }
6360b8dc8d2SHong Zhang         }
63751f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
6380b8dc8d2SHong Zhang       }
639b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6400b8dc8d2SHong Zhang       *norm = 0.0;
641d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
6420b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
6430b8dc8d2SHong Zhang       }
64474ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
645f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
646a30f8f8cSSatish Balay   }
647a30f8f8cSSatish Balay   PetscFunctionReturn(0);
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay 
650dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
651a30f8f8cSSatish Balay {
652a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
653dfbe8321SBarry Smith   PetscErrorCode ierr;
6541302d50aSBarry Smith   PetscInt       nstash,reallocs;
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   PetscFunctionBegin;
65726fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
658a30f8f8cSSatish Balay 
659d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
6601e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
661a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6621e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
663a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
6641e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
665a30f8f8cSSatish Balay   PetscFunctionReturn(0);
666a30f8f8cSSatish Balay }
667a30f8f8cSSatish Balay 
668dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
669a30f8f8cSSatish Balay {
670a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
671a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
6726849ba73SBarry Smith   PetscErrorCode ierr;
67313f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
674e44c0bd4SBarry Smith   PetscInt       *row,*col;
675ace3abfcSBarry Smith   PetscBool      other_disassembled;
67613f74950SBarry Smith   PetscMPIInt    n;
677ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
678a30f8f8cSSatish Balay   MatScalar      *val;
679a30f8f8cSSatish Balay 
68091c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
681a30f8f8cSSatish Balay   PetscFunctionBegin;
6824cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
683a30f8f8cSSatish Balay     while (1) {
684a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
685a30f8f8cSSatish Balay       if (!flg) break;
686a30f8f8cSSatish Balay 
687a30f8f8cSSatish Balay       for (i=0; i<n;) {
688a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
68926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
69026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
69126fbe8dcSKarl Rupp         }
692a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
693a30f8f8cSSatish Balay         else       ncols = n-i;
694a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
6954b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
696a30f8f8cSSatish Balay         i    = j;
697a30f8f8cSSatish Balay       }
698a30f8f8cSSatish Balay     }
699a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
700a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
701a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
702a30f8f8cSSatish Balay        restore the original flags */
703a30f8f8cSSatish Balay     r1 = baij->roworiented;
704a30f8f8cSSatish Balay     r2 = a->roworiented;
70591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
70626fbe8dcSKarl Rupp 
707a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
708a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
70926fbe8dcSKarl Rupp 
71091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
711a30f8f8cSSatish Balay     while (1) {
712a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
713a30f8f8cSSatish Balay       if (!flg) break;
714a30f8f8cSSatish Balay 
715a30f8f8cSSatish Balay       for (i=0; i<n;) {
716a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
71726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
71826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
71926fbe8dcSKarl Rupp         }
720a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
721a30f8f8cSSatish Balay         else       ncols = n-i;
7224b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
723a30f8f8cSSatish Balay         i    = j;
724a30f8f8cSSatish Balay       }
725a30f8f8cSSatish Balay     }
726a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
72726fbe8dcSKarl Rupp 
728a30f8f8cSSatish Balay     baij->roworiented = r1;
729a30f8f8cSSatish Balay     a->roworiented    = r2;
73026fbe8dcSKarl Rupp 
73191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
732a30f8f8cSSatish Balay   }
733a30f8f8cSSatish Balay 
734a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
735a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
736a30f8f8cSSatish Balay 
737a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
738a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
739a30f8f8cSSatish Balay   /*
740a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
741a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
742a30f8f8cSSatish Balay   */
743a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
744b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
745a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
746ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
747a30f8f8cSSatish Balay     }
748a30f8f8cSSatish Balay   }
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
75140781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
752a30f8f8cSSatish Balay   }
753a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
755a30f8f8cSSatish Balay 
75674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
75726fbe8dcSKarl Rupp 
758a30f8f8cSSatish Balay   baij->rowvalues = 0;
7594f9cfa9eSBarry Smith 
7604f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
7614f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
762e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
763b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
764e56f5c9eSBarry Smith   }
765a30f8f8cSSatish Balay   PetscFunctionReturn(0);
766a30f8f8cSSatish Balay }
767a30f8f8cSSatish Balay 
768dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
7699804daf3SBarry Smith #include <petscdraw.h>
7706849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
771a30f8f8cSSatish Balay {
772a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
773dfbe8321SBarry Smith   PetscErrorCode    ierr;
774d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
7757da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
776ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
777b0a32e0cSBarry Smith   PetscViewer       sviewer;
778f3ef73ceSBarry Smith   PetscViewerFormat format;
779a30f8f8cSSatish Balay 
780a30f8f8cSSatish Balay   PetscFunctionBegin;
781251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
782251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
78332077d6dSBarry Smith   if (iascii) {
784b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
785456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
786a30f8f8cSSatish Balay       MatInfo info;
787ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
788a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
7891575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
790b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
791a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
792e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
793a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
794e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
795b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7961575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
79707d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
798a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
799a30f8f8cSSatish Balay       PetscFunctionReturn(0);
800fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
80177431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
802a30f8f8cSSatish Balay       PetscFunctionReturn(0);
803c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
804c1490034SHong Zhang       PetscFunctionReturn(0);
805a30f8f8cSSatish Balay     }
806a30f8f8cSSatish Balay   }
807a30f8f8cSSatish Balay 
808a30f8f8cSSatish Balay   if (isdraw) {
809b0a32e0cSBarry Smith     PetscDraw draw;
810ace3abfcSBarry Smith     PetscBool isnull;
811b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
81245f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
81345f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
814a30f8f8cSSatish Balay   }
815a30f8f8cSSatish Balay 
8167da1fb6eSBarry Smith   {
817a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
818a30f8f8cSSatish Balay     Mat          A;
81965d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
82065d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
821d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
822a30f8f8cSSatish Balay     MatScalar    *a;
8233e219373SBarry Smith     const char   *matname;
824a30f8f8cSSatish Balay 
825f204ca49SKris Buschelman     /* Should this be the same type as mat? */
826ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
827a30f8f8cSSatish Balay     if (!rank) {
828f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
829a30f8f8cSSatish Balay     } else {
830f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
831a30f8f8cSSatish Balay     }
832f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
8330298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
8342b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
8353bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
836a30f8f8cSSatish Balay 
837a30f8f8cSSatish Balay     /* copy over the A part */
83865d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
839a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
840785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
841a30f8f8cSSatish Balay 
842a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
843e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
84426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
845a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
846e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
847a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
848dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
84926fbe8dcSKarl Rupp           col++;
85026fbe8dcSKarl Rupp           a += bs;
851a30f8f8cSSatish Balay         }
852a30f8f8cSSatish Balay       }
853a30f8f8cSSatish Balay     }
854a30f8f8cSSatish Balay     /* copy over the B part */
85565d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
85665d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
857a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
858e9f7bc9eSHong Zhang 
859e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
86026fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
861a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
862a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
863a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
864799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
86526fbe8dcSKarl Rupp           col++;
86626fbe8dcSKarl Rupp           a += bs;
867a30f8f8cSSatish Balay         }
868a30f8f8cSSatish Balay       }
869a30f8f8cSSatish Balay     }
870a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
871a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
872a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
873a30f8f8cSSatish Balay     /*
874a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
875b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
876a30f8f8cSSatish Balay     */
8773f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
878ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
8793e219373SBarry Smith     if (!rank) {
880ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
881383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
882a30f8f8cSSatish Balay     }
8833f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
8841575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8856bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
886a30f8f8cSSatish Balay   }
887a30f8f8cSSatish Balay   PetscFunctionReturn(0);
888a30f8f8cSSatish Balay }
889a30f8f8cSSatish Balay 
890d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer)
891d1654148SHong Zhang {
892d1654148SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
893d1654148SHong Zhang   Mat_SeqSBAIJ   *A = (Mat_SeqSBAIJ*)a->A->data;
894d1654148SHong Zhang   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
895d1654148SHong Zhang   PetscErrorCode ierr;
896d1654148SHong Zhang   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
897d1654148SHong Zhang   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
898d1654148SHong Zhang   int            fd;
899d1654148SHong Zhang   PetscScalar    *column_values;
900d1654148SHong Zhang   FILE           *file;
901d1654148SHong Zhang   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
902d1654148SHong Zhang   PetscInt       message_count,flowcontrolcount;
903d1654148SHong Zhang 
904d1654148SHong Zhang   PetscFunctionBegin;
905d1654148SHong Zhang   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
906d1654148SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
907d1654148SHong Zhang   nz   = bs2*(A->nz + B->nz);
908d1654148SHong Zhang   rlen = mat->rmap->n;
909d1654148SHong Zhang   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
910d1654148SHong Zhang   if (!rank) {
911d1654148SHong Zhang     header[0] = MAT_FILE_CLASSID;
912d1654148SHong Zhang     header[1] = mat->rmap->N;
913d1654148SHong Zhang     header[2] = mat->cmap->N;
914d1654148SHong Zhang 
915d1654148SHong Zhang     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
916d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
917d1654148SHong Zhang     /* get largest number of rows any processor has */
918d1654148SHong Zhang     range = mat->rmap->range;
919d1654148SHong Zhang     for (i=1; i<size; i++) {
920d1654148SHong Zhang       rlen = PetscMax(rlen,range[i+1] - range[i]);
921d1654148SHong Zhang     }
922d1654148SHong Zhang   } else {
923d1654148SHong Zhang     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
924d1654148SHong Zhang   }
925d1654148SHong Zhang 
926d1654148SHong Zhang   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
927d1654148SHong Zhang   /* compute lengths of each row  */
928d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
929d1654148SHong Zhang     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
930d1654148SHong Zhang   }
931d1654148SHong Zhang   /* store the row lengths to the file */
932d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
933d1654148SHong Zhang   if (!rank) {
934d1654148SHong Zhang     MPI_Status status;
935d1654148SHong Zhang     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
936d1654148SHong Zhang     rlen = (range[1] - range[0])/bs;
937d1654148SHong Zhang     for (i=0; i<rlen; i++) {
938d1654148SHong Zhang       for (j=0; j<bs; j++) {
939d1654148SHong Zhang         row_lens[i*bs+j] = bs*crow_lens[i];
940d1654148SHong Zhang       }
941d1654148SHong Zhang     }
942d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
943d1654148SHong Zhang     for (i=1; i<size; i++) {
944d1654148SHong Zhang       rlen = (range[i+1] - range[i])/bs;
945d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
946d1654148SHong Zhang       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
947d1654148SHong Zhang       for (k=0; k<rlen; k++) {
948d1654148SHong Zhang         for (j=0; j<bs; j++) {
949d1654148SHong Zhang           row_lens[k*bs+j] = bs*crow_lens[k];
950d1654148SHong Zhang         }
951d1654148SHong Zhang       }
952d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
953d1654148SHong Zhang     }
954d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
955d1654148SHong Zhang     ierr = PetscFree(row_lens);CHKERRQ(ierr);
956d1654148SHong Zhang   } else {
957d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
958d1654148SHong Zhang     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
959d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
960d1654148SHong Zhang   }
961d1654148SHong Zhang   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
962d1654148SHong Zhang 
963d1654148SHong Zhang   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
964d1654148SHong Zhang      information needed to make it for each row from a block row. This does require more communication but still not more than
965d1654148SHong Zhang      the communication needed for the nonzero values  */
966d1654148SHong Zhang   nzmax = nz; /*  space a largest processor needs */
967d1654148SHong Zhang   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
968d1654148SHong Zhang   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
969d1654148SHong Zhang   cnt   = 0;
970d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
971d1654148SHong Zhang     pcnt = cnt;
972d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
973d1654148SHong Zhang       if ((col = garray[B->j[j]]) > cstart) break;
974d1654148SHong Zhang       for (l=0; l<bs; l++) {
975d1654148SHong Zhang         column_indices[cnt++] = bs*col+l;
976d1654148SHong Zhang       }
977d1654148SHong Zhang     }
978d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
979d1654148SHong Zhang       for (l=0; l<bs; l++) {
980d1654148SHong Zhang         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
981d1654148SHong Zhang       }
982d1654148SHong Zhang     }
983d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
984d1654148SHong Zhang       for (l=0; l<bs; l++) {
985d1654148SHong Zhang         column_indices[cnt++] = bs*garray[B->j[j]]+l;
986d1654148SHong Zhang       }
987d1654148SHong Zhang     }
988d1654148SHong Zhang     len = cnt - pcnt;
989d1654148SHong Zhang     for (k=1; k<bs; k++) {
990d1654148SHong Zhang       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
991d1654148SHong Zhang       cnt += len;
992d1654148SHong Zhang     }
993d1654148SHong Zhang   }
994d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
995d1654148SHong Zhang 
996d1654148SHong Zhang   /* store the columns to the file */
997d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
998d1654148SHong Zhang   if (!rank) {
999d1654148SHong Zhang     MPI_Status status;
1000d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1001d1654148SHong Zhang     for (i=1; i<size; i++) {
1002d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1003d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1004d1654148SHong Zhang       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1005d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1006d1654148SHong Zhang     }
1007d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1008d1654148SHong Zhang   } else {
1009d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1010d1654148SHong Zhang     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1011d1654148SHong Zhang     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1012d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1013d1654148SHong Zhang   }
1014d1654148SHong Zhang   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1015d1654148SHong Zhang 
1016d1654148SHong Zhang   /* load up the numerical values */
1017d1654148SHong Zhang   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1018d1654148SHong Zhang   cnt  = 0;
1019d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1020d1654148SHong Zhang     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1021d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1022d1654148SHong Zhang       if (garray[B->j[j]] > cstart) break;
1023d1654148SHong Zhang       for (l=0; l<bs; l++) {
1024d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1025d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1026d1654148SHong Zhang         }
1027d1654148SHong Zhang       }
1028d1654148SHong Zhang       cnt += bs;
1029d1654148SHong Zhang     }
1030d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1031d1654148SHong Zhang       for (l=0; l<bs; l++) {
1032d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1033d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1034d1654148SHong Zhang         }
1035d1654148SHong Zhang       }
1036d1654148SHong Zhang       cnt += bs;
1037d1654148SHong Zhang     }
1038d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1039d1654148SHong Zhang       for (l=0; l<bs; l++) {
1040d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1041d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1042d1654148SHong Zhang         }
1043d1654148SHong Zhang       }
1044d1654148SHong Zhang       cnt += bs;
1045d1654148SHong Zhang     }
1046d1654148SHong Zhang     cnt += (bs-1)*rlen;
1047d1654148SHong Zhang   }
1048d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1049d1654148SHong Zhang 
1050d1654148SHong Zhang   /* store the column values to the file */
1051d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1052d1654148SHong Zhang   if (!rank) {
1053d1654148SHong Zhang     MPI_Status status;
1054d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1055d1654148SHong Zhang     for (i=1; i<size; i++) {
1056d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1057d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1058d1654148SHong Zhang       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1059d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1060d1654148SHong Zhang     }
1061d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1062d1654148SHong Zhang   } else {
1063d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1064d1654148SHong Zhang     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1065d1654148SHong Zhang     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1066d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1067d1654148SHong Zhang   }
1068d1654148SHong Zhang   ierr = PetscFree(column_values);CHKERRQ(ierr);
1069d1654148SHong Zhang 
1070d1654148SHong Zhang   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1071d1654148SHong Zhang   if (file) {
1072d1654148SHong Zhang     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1073d1654148SHong Zhang   }
1074d1654148SHong Zhang   PetscFunctionReturn(0);
1075d1654148SHong Zhang }
1076d1654148SHong Zhang 
1077dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
1078a30f8f8cSSatish Balay {
1079dfbe8321SBarry Smith   PetscErrorCode ierr;
1080ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
1081a30f8f8cSSatish Balay 
1082a30f8f8cSSatish Balay   PetscFunctionBegin;
1083251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1084251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1085251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1086251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1087d1654148SHong Zhang   if (iascii || isdraw || issocket) {
1088a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1089d1654148SHong Zhang   } else if (isbinary) {
1090d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1091a30f8f8cSSatish Balay   }
1092a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1093a30f8f8cSSatish Balay }
1094a30f8f8cSSatish Balay 
1095dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1096a30f8f8cSSatish Balay {
1097a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1098dfbe8321SBarry Smith   PetscErrorCode ierr;
1099a30f8f8cSSatish Balay 
1100a30f8f8cSSatish Balay   PetscFunctionBegin;
1101a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1102d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1103a30f8f8cSSatish Balay #endif
1104a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1105a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
11066bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
11076bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1108a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
11096bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1110a30f8f8cSSatish Balay #else
111105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1112a30f8f8cSSatish Balay #endif
111305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
11146bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
11156bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
11166bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
11176bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
11186bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
11196bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
11206bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
11216bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
11225755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
112305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
112405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
11256bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
11266bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
11276bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1128ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
112905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1130a30f8f8cSSatish Balay #endif
113159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
113259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1133899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1134bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1135901853e0SKris Buschelman 
1136dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1137bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1138bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1139bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1140bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
11416214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
11426214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
11436214f412SHong Zhang #endif
1144a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1145a30f8f8cSSatish Balay }
1146a30f8f8cSSatish Balay 
1147547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1148547795f9SHong Zhang {
1149547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1150547795f9SHong Zhang   PetscErrorCode    ierr;
1151547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
11526de40e93SBarry Smith   PetscScalar       *from;
11536de40e93SBarry Smith   const PetscScalar *x;
1154547795f9SHong Zhang 
1155547795f9SHong Zhang   PetscFunctionBegin;
1156547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1157e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1158547795f9SHong Zhang 
1159547795f9SHong Zhang   /* diagonal part */
1160547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1161547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1162547795f9SHong Zhang 
1163547795f9SHong Zhang   /* subdiagonal part */
1164547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1165547795f9SHong Zhang 
1166547795f9SHong Zhang   /* copy x into the vec slvec0 */
1167547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
11686de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1169547795f9SHong Zhang 
1170547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1171547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
11726de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1173547795f9SHong Zhang 
1174547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1175547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1176547795f9SHong Zhang   /* supperdiagonal part */
1177547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1178547795f9SHong Zhang   PetscFunctionReturn(0);
1179547795f9SHong Zhang }
1180547795f9SHong Zhang 
1181dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1182a9d4b620SHong Zhang {
1183a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1184dfbe8321SBarry Smith   PetscErrorCode    ierr;
1185d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1186d9ca1df4SBarry Smith   PetscScalar       *from;
1187d9ca1df4SBarry Smith   const PetscScalar *x;
1188a9d4b620SHong Zhang 
1189a9d4b620SHong Zhang   PetscFunctionBegin;
1190a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1191e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1192a9d4b620SHong Zhang 
1193a9d4b620SHong Zhang   /* diagonal part */
1194a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1195fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1196a9d4b620SHong Zhang 
1197a9d4b620SHong Zhang   /* subdiagonal part */
1198a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1199fc165ae2SBarry Smith 
1200a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12011ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1202d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1203a9d4b620SHong Zhang 
1204fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1205fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1206d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1207fc165ae2SBarry Smith 
1208fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1209ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1210a9d4b620SHong Zhang   /* supperdiagonal part */
1211a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1212a9d4b620SHong Zhang   PetscFunctionReturn(0);
1213a9d4b620SHong Zhang }
1214a9d4b620SHong Zhang 
1215dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1216a30f8f8cSSatish Balay {
1217a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1218dfbe8321SBarry Smith   PetscErrorCode ierr;
12191302d50aSBarry Smith   PetscInt       nt;
1220a30f8f8cSSatish Balay 
1221a30f8f8cSSatish Balay   PetscFunctionBegin;
1222a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1223e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1224e7e72b3dSBarry Smith 
1225a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1226e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
122765d70643SHong Zhang 
1228ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1229b941877fSHong Zhang   /* do diagonal part */
1230b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1231b941877fSHong Zhang   /* do supperdiagonal part */
1232ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1233b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1234b941877fSHong Zhang   /* do subdiagonal part */
1235b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1236ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1237ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1238a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1239a30f8f8cSSatish Balay }
1240a30f8f8cSSatish Balay 
1241dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1242a30f8f8cSSatish Balay {
1243de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1244dfbe8321SBarry Smith   PetscErrorCode    ierr;
1245d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1246d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1247d9ca1df4SBarry Smith   const PetscScalar *x;
1248a9d4b620SHong Zhang 
1249a9d4b620SHong Zhang   PetscFunctionBegin;
1250a9d4b620SHong Zhang   /*
1251ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
12520ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1253a9d4b620SHong Zhang   */
1254a9d4b620SHong Zhang   /* diagonal part */
1255a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
12562dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1257a9d4b620SHong Zhang 
1258a9d4b620SHong Zhang   /* subdiagonal part */
1259a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1260a9d4b620SHong Zhang 
1261a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12621ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1263d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1264a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
12651ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1266a9d4b620SHong Zhang 
1267ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1268d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1269ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1270a9d4b620SHong Zhang 
1271a9d4b620SHong Zhang   /* supperdiagonal part */
1272a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1273a9d4b620SHong Zhang   PetscFunctionReturn(0);
1274a9d4b620SHong Zhang }
1275a9d4b620SHong Zhang 
1276dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1277a9d4b620SHong Zhang {
1278a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1279dfbe8321SBarry Smith   PetscErrorCode ierr;
1280a30f8f8cSSatish Balay 
1281a30f8f8cSSatish Balay   PetscFunctionBegin;
1282ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1283b941877fSHong Zhang   /* do diagonal part */
1284b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1285b941877fSHong Zhang   /* do supperdiagonal part */
1286ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1287de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1288de8b6608SHong Zhang 
1289b941877fSHong Zhang   /* do subdiagonal part */
1290a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1291ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1292ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1293a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1294a30f8f8cSSatish Balay }
1295a30f8f8cSSatish Balay 
1296a30f8f8cSSatish Balay /*
1297a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1298a30f8f8cSSatish Balay    diagonal block
1299a30f8f8cSSatish Balay */
1300dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1301a30f8f8cSSatish Balay {
1302a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1303dfbe8321SBarry Smith   PetscErrorCode ierr;
1304a30f8f8cSSatish Balay 
1305a30f8f8cSSatish Balay   PetscFunctionBegin;
1306e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1307a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1308a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1309a30f8f8cSSatish Balay }
1310a30f8f8cSSatish Balay 
1311f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1312a30f8f8cSSatish Balay {
1313a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1314dfbe8321SBarry Smith   PetscErrorCode ierr;
1315a30f8f8cSSatish Balay 
1316a30f8f8cSSatish Balay   PetscFunctionBegin;
1317f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1318f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
13221302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1323a30f8f8cSSatish Balay {
1324d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1325d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1326d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1327d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1328d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1329899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1330d0d4cfc2SHong Zhang 
1331a30f8f8cSSatish Balay   PetscFunctionBegin;
1332e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1333d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1334d0d4cfc2SHong Zhang 
1335d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1336d0d4cfc2SHong Zhang     /*
1337d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1338d0d4cfc2SHong Zhang     */
1339d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1340d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1341d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1342d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1343d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
134426fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1345d0d4cfc2SHong Zhang     }
1346dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1347d0d4cfc2SHong Zhang   }
1348d0d4cfc2SHong Zhang 
1349e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1350d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1351d0d4cfc2SHong Zhang 
1352d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1353d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1354d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1355d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1356d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1357d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1358d0d4cfc2SHong Zhang 
1359d0d4cfc2SHong Zhang   cmap = mat->garray;
1360d0d4cfc2SHong Zhang   if (v  || idx) {
1361d0d4cfc2SHong Zhang     if (nztot) {
1362d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1363d0d4cfc2SHong Zhang       PetscInt imark = -1;
1364d0d4cfc2SHong Zhang       if (v) {
1365d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1366d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1367d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1368d0d4cfc2SHong Zhang           else break;
1369d0d4cfc2SHong Zhang         }
1370d0d4cfc2SHong Zhang         imark = i;
1371d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1372d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1373d0d4cfc2SHong Zhang       }
1374d0d4cfc2SHong Zhang       if (idx) {
1375d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1376d0d4cfc2SHong Zhang         if (imark > -1) {
1377d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1378d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1379d0d4cfc2SHong Zhang           }
1380d0d4cfc2SHong Zhang         } else {
1381d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
138226fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1383d0d4cfc2SHong Zhang             else break;
1384d0d4cfc2SHong Zhang           }
1385d0d4cfc2SHong Zhang           imark = i;
1386d0d4cfc2SHong Zhang         }
1387d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1388d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1389d0d4cfc2SHong Zhang       }
1390d0d4cfc2SHong Zhang     } else {
1391d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1392d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1393d0d4cfc2SHong Zhang     }
1394d0d4cfc2SHong Zhang   }
1395d0d4cfc2SHong Zhang   *nz  = nztot;
1396d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1397d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1398a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1399a30f8f8cSSatish Balay }
1400a30f8f8cSSatish Balay 
14011302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1402a30f8f8cSSatish Balay {
1403a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1404a30f8f8cSSatish Balay 
1405a30f8f8cSSatish Balay   PetscFunctionBegin;
1406e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1407a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1408a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1409a30f8f8cSSatish Balay }
1410a30f8f8cSSatish Balay 
1411d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1412d0d4cfc2SHong Zhang {
1413d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1414d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1415d0d4cfc2SHong Zhang 
1416d0d4cfc2SHong Zhang   PetscFunctionBegin;
1417d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1418d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1419d0d4cfc2SHong Zhang }
1420d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1421d0d4cfc2SHong Zhang {
1422d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1423d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1424d0d4cfc2SHong Zhang 
1425d0d4cfc2SHong Zhang   PetscFunctionBegin;
1426d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1427d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1428d0d4cfc2SHong Zhang }
1429d0d4cfc2SHong Zhang 
143099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
143199cafbc1SBarry Smith {
143299cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
143399cafbc1SBarry Smith   PetscErrorCode ierr;
143499cafbc1SBarry Smith 
143599cafbc1SBarry Smith   PetscFunctionBegin;
143699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
143799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
143899cafbc1SBarry Smith   PetscFunctionReturn(0);
143999cafbc1SBarry Smith }
144099cafbc1SBarry Smith 
144199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
144299cafbc1SBarry Smith {
144399cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
144499cafbc1SBarry Smith   PetscErrorCode ierr;
144599cafbc1SBarry Smith 
144699cafbc1SBarry Smith   PetscFunctionBegin;
144799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
144899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
144999cafbc1SBarry Smith   PetscFunctionReturn(0);
145099cafbc1SBarry Smith }
145199cafbc1SBarry Smith 
14527dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
145336032a97SHong Zhang    Input: isrow       - distributed(parallel),
145436032a97SHong Zhang           iscol_local - locally owned (seq)
145536032a97SHong Zhang */
145636032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
14578f46ffcaSHong Zhang {
14588f46ffcaSHong Zhang   PetscErrorCode ierr;
14598f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
14608f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
146136032a97SHong Zhang 
146236032a97SHong Zhang   PetscFunctionBegin;
14638f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
14648f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
14651098a8e8SHong Zhang   if (sz1 > sz2) {
14661098a8e8SHong Zhang     *flg = PETSC_FALSE;
14671098a8e8SHong Zhang     PetscFunctionReturn(0);
14681098a8e8SHong Zhang   }
14698f46ffcaSHong Zhang 
14708f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
14718f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
14728f46ffcaSHong Zhang 
14738f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
14748f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
14758f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
14768f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
14778f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
14788f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
14798f46ffcaSHong Zhang 
14808f46ffcaSHong Zhang   nmatch=0;
14818f46ffcaSHong Zhang   k     = 0;
14828f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
14838f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
14848f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
14858f46ffcaSHong Zhang         k = j; nmatch++;
14868f46ffcaSHong Zhang         break;
14878f46ffcaSHong Zhang       }
14888f46ffcaSHong Zhang     }
14898f46ffcaSHong Zhang   }
14908f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
14918f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
14928f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
14938f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
14941098a8e8SHong Zhang   if (nmatch < sz1) {
14951098a8e8SHong Zhang     *flg = PETSC_FALSE;
14961098a8e8SHong Zhang   } else {
14971098a8e8SHong Zhang     *flg = PETSC_TRUE;
14981098a8e8SHong Zhang   }
149936032a97SHong Zhang   PetscFunctionReturn(0);
15008f46ffcaSHong Zhang }
150136032a97SHong Zhang 
15027dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
150336032a97SHong Zhang {
150436032a97SHong Zhang   PetscErrorCode ierr;
150536032a97SHong Zhang   IS             iscol_local;
150636032a97SHong Zhang   PetscInt       csize;
150736032a97SHong Zhang   PetscBool      isequal;
150836032a97SHong Zhang 
150936032a97SHong Zhang   PetscFunctionBegin;
151036032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
151136032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
151236032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
151336032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
151436032a97SHong Zhang   } else {
151536032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
151636032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
151736032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
15188f46ffcaSHong Zhang   }
15198f46ffcaSHong Zhang 
15207dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
15217dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
15228f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
15238f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
15248f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
15258f46ffcaSHong Zhang   }
15268f46ffcaSHong Zhang   PetscFunctionReturn(0);
15278f46ffcaSHong Zhang }
15288f46ffcaSHong Zhang 
1529dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1530a30f8f8cSSatish Balay {
1531a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1532dfbe8321SBarry Smith   PetscErrorCode ierr;
1533a30f8f8cSSatish Balay 
1534a30f8f8cSSatish Balay   PetscFunctionBegin;
1535a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1536a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1537a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1538a30f8f8cSSatish Balay }
1539a30f8f8cSSatish Balay 
1540dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1541a30f8f8cSSatish Balay {
1542a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1543a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1544dfbe8321SBarry Smith   PetscErrorCode ierr;
1545a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1546a30f8f8cSSatish Balay 
1547a30f8f8cSSatish Balay   PetscFunctionBegin;
1548d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
154926fbe8dcSKarl Rupp 
1550a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
155126fbe8dcSKarl Rupp 
1552a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1553a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
155426fbe8dcSKarl Rupp 
1555a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
155626fbe8dcSKarl Rupp 
1557a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1558a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1559a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1560a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1561a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1562a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1563a30f8f8cSSatish Balay     info->memory       = isend[3];
1564a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1565a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1566b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
156726fbe8dcSKarl Rupp 
1568a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1569a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1570a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1571a30f8f8cSSatish Balay     info->memory       = irecv[3];
1572a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1573a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1574b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
157526fbe8dcSKarl Rupp 
1576a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1577a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1578a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1579a30f8f8cSSatish Balay     info->memory       = irecv[3];
1580a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1581f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1582a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1583a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1584a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1585a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1586a30f8f8cSSatish Balay }
1587a30f8f8cSSatish Balay 
1588ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1589a30f8f8cSSatish Balay {
1590a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1591d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1592dfbe8321SBarry Smith   PetscErrorCode ierr;
1593a30f8f8cSSatish Balay 
1594a30f8f8cSSatish Balay   PetscFunctionBegin;
1595e98b92d7SKris Buschelman   switch (op) {
1596512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1597e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
159828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1599a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1600c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1601e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
160243674050SBarry Smith     MatCheckPreallocated(A,1);
16034e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16044e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1605e98b92d7SKris Buschelman     break;
1606e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
160743674050SBarry Smith     MatCheckPreallocated(A,1);
16084e0d8c25SBarry Smith     a->roworiented = flg;
160926fbe8dcSKarl Rupp 
16104e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16114e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1612e98b92d7SKris Buschelman     break;
16134e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1614290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1615e98b92d7SKris Buschelman     break;
1616e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16174e0d8c25SBarry Smith     a->donotstash = flg;
1618e98b92d7SKris Buschelman     break;
1619e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
16204e0d8c25SBarry Smith     a->ht_flag = flg;
1621e98b92d7SKris Buschelman     break;
16229a4540c5SBarry Smith   case MAT_HERMITIAN:
162343674050SBarry Smith     MatCheckPreallocated(A,1);
1624e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1625eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16260f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1627547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
16280f2140c7SStefano Zampini #endif
1629eeffb40dSHong Zhang     break;
1630ffa07934SHong Zhang   case MAT_SPD:
1631ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1632ffa07934SHong Zhang     A->spd     = flg;
1633ffa07934SHong Zhang     if (flg) {
1634ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1635ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1636ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1637ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1638ffa07934SHong Zhang     }
1639ffa07934SHong Zhang     break;
164077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
164143674050SBarry Smith     MatCheckPreallocated(A,1);
1642eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1643eeffb40dSHong Zhang     break;
164477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
164543674050SBarry Smith     MatCheckPreallocated(A,1);
1646eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1647eeffb40dSHong Zhang     break;
16489a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1649e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1650290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
165177e54ba9SKris Buschelman     break;
1652d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
16534e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1654d0d4cfc2SHong Zhang     break;
1655d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
16564e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1657d0d4cfc2SHong Zhang     break;
1658d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
16594e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1660d0d4cfc2SHong Zhang     break;
1661e98b92d7SKris Buschelman   default:
1662e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1663a30f8f8cSSatish Balay   }
1664a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1665a30f8f8cSSatish Balay }
1666a30f8f8cSSatish Balay 
1667fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1668a30f8f8cSSatish Balay {
1669dfbe8321SBarry Smith   PetscErrorCode ierr;
16706e111a19SKarl Rupp 
1671a30f8f8cSSatish Balay   PetscFunctionBegin;
1672cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1673999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1674cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1675cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1676fc4dec0aSBarry Smith   }
16778115998fSBarry Smith   PetscFunctionReturn(0);
1678a30f8f8cSSatish Balay }
1679a30f8f8cSSatish Balay 
1680dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1681a30f8f8cSSatish Balay {
1682a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1683a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1684dfbe8321SBarry Smith   PetscErrorCode ierr;
16855e90f9d9SHong Zhang   PetscInt       nv,m,n;
1686ace3abfcSBarry Smith   PetscBool      flg;
1687a30f8f8cSSatish Balay 
1688a30f8f8cSSatish Balay   PetscFunctionBegin;
1689a30f8f8cSSatish Balay   if (ll != rr) {
1690b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1691e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1692a30f8f8cSSatish Balay   }
1693b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1694b3bf805bSHong Zhang 
16955e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1696e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1697b3bf805bSHong Zhang 
16985e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1699e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
17005e90f9d9SHong Zhang 
1701ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17025e90f9d9SHong Zhang 
17035e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
17040298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17055e90f9d9SHong Zhang 
17065e90f9d9SHong Zhang   /* scale the diagonal part */
1707a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1708a30f8f8cSSatish Balay 
17095e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1710ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17110298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1712a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1713a30f8f8cSSatish Balay }
1714a30f8f8cSSatish Balay 
1715dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1716a30f8f8cSSatish Balay {
1717f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1718dfbe8321SBarry Smith   PetscErrorCode ierr;
1719a30f8f8cSSatish Balay 
1720a30f8f8cSSatish Balay   PetscFunctionBegin;
1721a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1722a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1723a30f8f8cSSatish Balay }
1724a30f8f8cSSatish Balay 
17256849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1726a30f8f8cSSatish Balay 
1727ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1728a30f8f8cSSatish Balay {
1729a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1730a30f8f8cSSatish Balay   Mat            a,b,c,d;
1731ace3abfcSBarry Smith   PetscBool      flg;
1732dfbe8321SBarry Smith   PetscErrorCode ierr;
1733a30f8f8cSSatish Balay 
1734a30f8f8cSSatish Balay   PetscFunctionBegin;
1735a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1736a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1737a30f8f8cSSatish Balay 
1738a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1739abc0a331SBarry Smith   if (flg) {
1740a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1741a30f8f8cSSatish Balay   }
1742b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1743a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1744a30f8f8cSSatish Balay }
1745a30f8f8cSSatish Balay 
17463c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
17473c896bc6SHong Zhang {
17483c896bc6SHong Zhang   PetscErrorCode ierr;
17493c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17503c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
17513c896bc6SHong Zhang 
17523c896bc6SHong Zhang   PetscFunctionBegin;
17533c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17543c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1755d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
17563c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1757d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
17583c896bc6SHong Zhang   } else {
17593c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17603c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17613c896bc6SHong Zhang   }
1762cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
17633c896bc6SHong Zhang   PetscFunctionReturn(0);
17643c896bc6SHong Zhang }
17653c896bc6SHong Zhang 
17664994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1767273d9f13SBarry Smith {
1768dfbe8321SBarry Smith   PetscErrorCode ierr;
1769273d9f13SBarry Smith 
1770273d9f13SBarry Smith   PetscFunctionBegin;
1771535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1772273d9f13SBarry Smith   PetscFunctionReturn(0);
1773273d9f13SBarry Smith }
1774a5e6ed63SBarry Smith 
17754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17764fe895cdSHong Zhang {
17774fe895cdSHong Zhang   PetscErrorCode ierr;
17784fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
17794fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17804fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
17814fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
17824fe895cdSHong Zhang 
17834fe895cdSHong Zhang   PetscFunctionBegin;
17844fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17854fe895cdSHong Zhang     PetscScalar alpha = a;
17864fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
17874fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1788c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
17898b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
17904fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
17914fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1792c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
17938b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1794a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1795ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1796ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1797ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1798ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
17994fe895cdSHong Zhang   } else {
18004de5dceeSHong Zhang     Mat      B;
18014de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18024de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1803d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
18044de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
18054de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
18064de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
18074de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
18084de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
18094de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
18104de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
18114de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
18124de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
18134de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
18144de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
18154de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
181628be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
18174de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
18184de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1819d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
18204de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
18214fe895cdSHong Zhang   }
18224fe895cdSHong Zhang   PetscFunctionReturn(0);
18234fe895cdSHong Zhang }
18244fe895cdSHong Zhang 
18257dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1826a5e6ed63SBarry Smith {
18276849ba73SBarry Smith   PetscErrorCode ierr;
18281302d50aSBarry Smith   PetscInt       i;
1829afebec48SHong Zhang   PetscBool      flg;
1830a5e6ed63SBarry Smith 
18316849ba73SBarry Smith   PetscFunctionBegin;
18327dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1833a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1834a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1835afebec48SHong Zhang     if (!flg) {
1836b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1837a5e6ed63SBarry Smith     }
18384dcd73b1SHong Zhang   }
1839a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1840a5e6ed63SBarry Smith }
1841a5e6ed63SBarry Smith 
18427d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
18437d68702bSBarry Smith {
18447d68702bSBarry Smith   PetscErrorCode ierr;
18457d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
18466f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
18477d68702bSBarry Smith 
18487d68702bSBarry Smith   PetscFunctionBegin;
18496f33a894SBarry Smith   if (!Y->preallocated) {
18507d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
18516f33a894SBarry Smith   } else if (!aij->nz) {
1852b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
18536f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1854b83222d8SBarry Smith     aij->nonew = nonew;
18557d68702bSBarry Smith   }
18567d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
18577d68702bSBarry Smith   PetscFunctionReturn(0);
18587d68702bSBarry Smith }
18597d68702bSBarry Smith 
18603b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
18613b49f96aSBarry Smith {
18623b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
18633b49f96aSBarry Smith   PetscErrorCode ierr;
18643b49f96aSBarry Smith 
18653b49f96aSBarry Smith   PetscFunctionBegin;
18663b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
18673b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
18683b49f96aSBarry Smith   if (d) {
18693b49f96aSBarry Smith     PetscInt rstart;
18703b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
18713b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
18723b49f96aSBarry Smith 
18733b49f96aSBarry Smith   }
18743b49f96aSBarry Smith   PetscFunctionReturn(0);
18753b49f96aSBarry Smith }
18763b49f96aSBarry Smith 
1877a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1878a5b7ff6bSBarry Smith {
1879a5b7ff6bSBarry Smith   PetscFunctionBegin;
1880a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1881a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1882a5b7ff6bSBarry Smith }
18833b49f96aSBarry Smith 
1884a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
18853964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1886a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1887a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1888a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
188997304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1890431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1891431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1892a30f8f8cSSatish Balay                                        0,
1893a30f8f8cSSatish Balay                                        0,
1894a30f8f8cSSatish Balay                                        0,
189597304618SKris Buschelman                                /* 10*/ 0,
1896a30f8f8cSSatish Balay                                        0,
1897a30f8f8cSSatish Balay                                        0,
189841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1899a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
190097304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1901a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1902a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1903a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1904a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
190597304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1906a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1907a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1908a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1909d519adbfSMatthew Knepley                                /* 24*/ 0,
1910a30f8f8cSSatish Balay                                        0,
1911a30f8f8cSSatish Balay                                        0,
1912a30f8f8cSSatish Balay                                        0,
1913a30f8f8cSSatish Balay                                        0,
19144994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1915b5df2d14SHong Zhang                                        0,
1916a30f8f8cSSatish Balay                                        0,
1917a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1918a30f8f8cSSatish Balay                                        0,
1919d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1920a30f8f8cSSatish Balay                                        0,
1921a30f8f8cSSatish Balay                                        0,
1922a30f8f8cSSatish Balay                                        0,
1923a30f8f8cSSatish Balay                                        0,
1924d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
19257dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1926d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1927a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
19283c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1929d519adbfSMatthew Knepley                                /* 44*/ 0,
1930a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
19317d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1932a30f8f8cSSatish Balay                                        0,
1933a30f8f8cSSatish Balay                                        0,
1934f73d5cc4SBarry Smith                                /* 49*/ 0,
1935a30f8f8cSSatish Balay                                        0,
1936a30f8f8cSSatish Balay                                        0,
1937a30f8f8cSSatish Balay                                        0,
1938a30f8f8cSSatish Balay                                        0,
1939d519adbfSMatthew Knepley                                /* 54*/ 0,
1940a30f8f8cSSatish Balay                                        0,
1941a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1942a30f8f8cSSatish Balay                                        0,
1943a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
19447dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1945a30f8f8cSSatish Balay                                        0,
1946a30f8f8cSSatish Balay                                        0,
1947357abbc8SBarry Smith                                        0,
194824d5174aSHong Zhang                                        0,
1949d519adbfSMatthew Knepley                                /* 64*/ 0,
195024d5174aSHong Zhang                                        0,
195124d5174aSHong Zhang                                        0,
195224d5174aSHong Zhang                                        0,
195324d5174aSHong Zhang                                        0,
1954d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
195524d5174aSHong Zhang                                        0,
195697304618SKris Buschelman                                        0,
195797304618SKris Buschelman                                        0,
195897304618SKris Buschelman                                        0,
1959d519adbfSMatthew Knepley                                /* 74*/ 0,
196097304618SKris Buschelman                                        0,
196197304618SKris Buschelman                                        0,
196297304618SKris Buschelman                                        0,
196397304618SKris Buschelman                                        0,
1964d519adbfSMatthew Knepley                                /* 79*/ 0,
196597304618SKris Buschelman                                        0,
196697304618SKris Buschelman                                        0,
196797304618SKris Buschelman                                        0,
19685bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1969d519adbfSMatthew Knepley                                /* 84*/ 0,
1970865e5f61SKris Buschelman                                        0,
1971865e5f61SKris Buschelman                                        0,
1972865e5f61SKris Buschelman                                        0,
1973865e5f61SKris Buschelman                                        0,
1974d519adbfSMatthew Knepley                                /* 89*/ 0,
1975865e5f61SKris Buschelman                                        0,
1976865e5f61SKris Buschelman                                        0,
1977865e5f61SKris Buschelman                                        0,
1978865e5f61SKris Buschelman                                        0,
1979d519adbfSMatthew Knepley                                /* 94*/ 0,
1980865e5f61SKris Buschelman                                        0,
1981865e5f61SKris Buschelman                                        0,
198299cafbc1SBarry Smith                                        0,
198399cafbc1SBarry Smith                                        0,
1984d519adbfSMatthew Knepley                                /* 99*/ 0,
198599cafbc1SBarry Smith                                        0,
198699cafbc1SBarry Smith                                        0,
198799cafbc1SBarry Smith                                        0,
198899cafbc1SBarry Smith                                        0,
1989d519adbfSMatthew Knepley                                /*104*/ 0,
199099cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1991d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1992d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
199395936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
199495936485SShri Abhyankar                                /*109*/ 0,
199595936485SShri Abhyankar                                        0,
199695936485SShri Abhyankar                                        0,
199795936485SShri Abhyankar                                        0,
19983b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
199995936485SShri Abhyankar                                /*114*/ 0,
200095936485SShri Abhyankar                                        0,
200195936485SShri Abhyankar                                        0,
200295936485SShri Abhyankar                                        0,
200395936485SShri Abhyankar                                        0,
200495936485SShri Abhyankar                                /*119*/ 0,
200595936485SShri Abhyankar                                        0,
200695936485SShri Abhyankar                                        0,
20073964eb88SJed Brown                                        0,
20083964eb88SJed Brown                                        0,
20093964eb88SJed Brown                                /*124*/ 0,
20103964eb88SJed Brown                                        0,
20113964eb88SJed Brown                                        0,
20123964eb88SJed Brown                                        0,
20133964eb88SJed Brown                                        0,
20143964eb88SJed Brown                                /*129*/ 0,
20153964eb88SJed Brown                                        0,
20163964eb88SJed Brown                                        0,
20173964eb88SJed Brown                                        0,
20183964eb88SJed Brown                                        0,
20193964eb88SJed Brown                                /*134*/ 0,
20203964eb88SJed Brown                                        0,
20213964eb88SJed Brown                                        0,
20223964eb88SJed Brown                                        0,
20233964eb88SJed Brown                                        0,
202446533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2025f9426fe0SMark Adams                                        0,
202659f5e6ceSHong Zhang                                        0,
202759f5e6ceSHong Zhang                                        0,
202859f5e6ceSHong Zhang                                        0,
202959f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
203099cafbc1SBarry Smith };
2031a30f8f8cSSatish Balay 
2032b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2033a23d5eceSKris Buschelman {
2034a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
2035dfbe8321SBarry Smith   PetscErrorCode ierr;
2036535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
2037a23d5eceSKris Buschelman 
2038a23d5eceSKris Buschelman   PetscFunctionBegin;
203933d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
204026283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
204126283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2042e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2043899cda47SBarry Smith 
2044a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
2045d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2046d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
2047c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
2048a23d5eceSKris Buschelman 
2049d0f46423SBarry Smith   B->rmap->bs = bs;
2050a23d5eceSKris Buschelman   b->bs2      = bs*bs;
2051a23d5eceSKris Buschelman   b->mbs      = mbs;
2052a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2053de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2054de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2055a23d5eceSKris Buschelman 
2056a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2057d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2058a23d5eceSKris Buschelman   }
2059d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2060d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2061a23d5eceSKris Buschelman 
2062d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2063d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2064a23d5eceSKris Buschelman 
2065cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2066cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2067cb7b82ddSBarry Smith #else
2068cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2069cb7b82ddSBarry Smith #endif
2070cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2071cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2072cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2073cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2074cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2075cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2076cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2077cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2078cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2079cb7b82ddSBarry Smith 
2080cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
2081cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2082cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2083cb7b82ddSBarry Smith   ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
2084cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2085cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2086cb7b82ddSBarry Smith 
2087526dfc15SBarry Smith   if (!B->preallocated) {
2088f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2089d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
20909c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
20913bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2092ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2093526dfc15SBarry Smith   }
2094a23d5eceSKris Buschelman 
2095526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2096526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
209726fbe8dcSKarl Rupp 
2098526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2099cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2100cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2101a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2102a23d5eceSKris Buschelman }
2103a23d5eceSKris Buschelman 
2104dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2105dfb205c3SBarry Smith {
2106dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
2107dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2108dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2109dfb205c3SBarry Smith   PetscScalar    *values=0;
2110dfb205c3SBarry Smith   PetscErrorCode ierr;
2111dfb205c3SBarry Smith 
2112dfb205c3SBarry Smith   PetscFunctionBegin;
2113ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2114dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2115dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2116dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2117dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2118e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2119dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2120dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2121dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
2122dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2123dfb205c3SBarry Smith 
2124dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2125dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2126dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2127dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2128dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2129dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
2130dfb205c3SBarry Smith     JJ     = jj + ii[i];
2131dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
2132dfb205c3SBarry Smith       if (*JJ >= cstart) break;
2133dfb205c3SBarry Smith       JJ++;
2134dfb205c3SBarry Smith     }
2135dfb205c3SBarry Smith     d = 0;
2136dfb205c3SBarry Smith     for (; j<nz; j++) {
2137dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2138dfb205c3SBarry Smith       d++;
2139dfb205c3SBarry Smith     }
2140dfb205c3SBarry Smith     d_nnz[i] = d;
2141dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2142dfb205c3SBarry Smith   }
2143dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2144dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2145dfb205c3SBarry Smith 
2146dfb205c3SBarry Smith   values = (PetscScalar*)V;
2147dfb205c3SBarry Smith   if (!values) {
2148785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2149dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2150dfb205c3SBarry Smith   }
2151dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2152dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2153dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2154dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2155dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2156dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2157dfb205c3SBarry Smith   }
2158dfb205c3SBarry Smith 
2159dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2160dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2161dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
21627827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2163dfb205c3SBarry Smith   PetscFunctionReturn(0);
2164dfb205c3SBarry Smith }
2165dfb205c3SBarry Smith 
21660bad9183SKris Buschelman /*MC
2167fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2168828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2169828413b8SBarry Smith    the matrix is stored.
2170828413b8SBarry Smith 
2171828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2172828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
21730bad9183SKris Buschelman 
21740bad9183SKris Buschelman    Options Database Keys:
21750bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
21760bad9183SKris Buschelman 
21770bad9183SKris Buschelman   Level: beginner
21780bad9183SKris Buschelman 
21790bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
21800bad9183SKris Buschelman M*/
21810bad9183SKris Buschelman 
2182cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
2183aa5a9175SDahai Guo 
21848cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2185b5df2d14SHong Zhang {
2186b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2187dfbe8321SBarry Smith   PetscErrorCode ierr;
218894ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2189b5df2d14SHong Zhang 
2190b5df2d14SHong Zhang   PetscFunctionBegin;
2191b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2192b0a32e0cSBarry Smith   B->data = (void*)b;
2193b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2194b5df2d14SHong Zhang 
2195b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2196b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2197b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2198b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
219926fbe8dcSKarl Rupp 
2200ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2201ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2202b5df2d14SHong Zhang 
2203b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2204854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2205b5df2d14SHong Zhang 
2206b5df2d14SHong Zhang   /* build cache for off array entries formed */
2207ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
220826fbe8dcSKarl Rupp 
2209b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
22100298fd71SBarry Smith   b->colmap      = NULL;
22110298fd71SBarry Smith   b->garray      = NULL;
2212b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2213b5df2d14SHong Zhang 
2214b5df2d14SHong Zhang   /* stuff used in block assembly */
2215b5df2d14SHong Zhang   b->barray = 0;
2216b5df2d14SHong Zhang 
2217b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2218b5df2d14SHong Zhang   b->lvec    = 0;
2219b5df2d14SHong Zhang   b->Mvctx   = 0;
222040781036SHong Zhang   b->slvec0  = 0;
222140781036SHong Zhang   b->slvec0b = 0;
222240781036SHong Zhang   b->slvec1  = 0;
222340781036SHong Zhang   b->slvec1a = 0;
222440781036SHong Zhang   b->slvec1b = 0;
222540781036SHong Zhang   b->sMvctx  = 0;
2226b5df2d14SHong Zhang 
2227b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2228b5df2d14SHong Zhang   b->rowindices   = 0;
2229b5df2d14SHong Zhang   b->rowvalues    = 0;
2230b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2231b5df2d14SHong Zhang 
2232b5df2d14SHong Zhang   /* hash table stuff */
2233b5df2d14SHong Zhang   b->ht           = 0;
2234b5df2d14SHong Zhang   b->hd           = 0;
2235b5df2d14SHong Zhang   b->ht_size      = 0;
2236b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2237b5df2d14SHong Zhang   b->ht_fact      = 0;
2238b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2239b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2240b5df2d14SHong Zhang 
22417dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
22427a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
22437a868f3eSHong Zhang 
224459ffdab8SBarry Smith   b->in_loc = 0;
224559ffdab8SBarry Smith   b->v_loc  = 0;
224659ffdab8SBarry Smith   b->n_loc  = 0;
224794ae4db5SBarry Smith 
2248bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2249bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2250bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2251bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
22526214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
22536214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
22546214f412SHong Zhang #endif
2255aa5a9175SDahai Guo 
225623ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
225723ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
225823ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
225923ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
22609899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
226126fbe8dcSKarl Rupp 
226213647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
226313647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
226413647f61SHong Zhang 
226517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
226694ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
226794ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
226894ae4db5SBarry Smith   if (flg) {
226994ae4db5SBarry Smith     PetscReal fact = 1.39;
227094ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
227194ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
227294ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
227394ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
227494ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
227594ae4db5SBarry Smith   }
227694ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2277b5df2d14SHong Zhang   PetscFunctionReturn(0);
2278b5df2d14SHong Zhang }
2279b5df2d14SHong Zhang 
2280209238afSKris Buschelman /*MC
2281002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2282209238afSKris Buschelman 
2283209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2284209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2285209238afSKris Buschelman 
2286209238afSKris Buschelman    Options Database Keys:
2287209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2288209238afSKris Buschelman 
2289209238afSKris Buschelman   Level: beginner
2290209238afSKris Buschelman 
2291209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2292209238afSKris Buschelman M*/
2293209238afSKris Buschelman 
2294b5df2d14SHong Zhang /*@C
2295b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2296b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2297b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2298b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2299b5df2d14SHong Zhang 
2300b5df2d14SHong Zhang    Collective on Mat
2301b5df2d14SHong Zhang 
2302b5df2d14SHong Zhang    Input Parameters:
23031c4f3114SJed Brown +  B - the matrix
2304bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2305bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2306b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2307b5df2d14SHong Zhang            submatrix  (same for all local rows)
2308b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
23096d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
23100298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
231195742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2312b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2313b5df2d14SHong Zhang            submatrix (same for all local rows).
2314b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2315c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
23160298fd71SBarry Smith            (possibly different for each block row) or NULL.
2317b5df2d14SHong Zhang 
2318b5df2d14SHong Zhang 
2319b5df2d14SHong Zhang    Options Database Keys:
2320b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2321b5df2d14SHong Zhang                      block calculations (much slower)
2322b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
2323b5df2d14SHong Zhang 
2324b5df2d14SHong Zhang    Notes:
2325b5df2d14SHong Zhang 
2326b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2327b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2328b5df2d14SHong Zhang 
232949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
233049a6f317SBarry Smith 
2331b5df2d14SHong Zhang    Storage Information:
2332b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2333b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2334b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2335b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2336b5df2d14SHong Zhang 
2337b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2338b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
23390298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2340b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2341b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2342b5df2d14SHong Zhang 
2343aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2344aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2345aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2346aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2347aa95bbe8SBarry Smith 
2348b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2349b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2350b5df2d14SHong Zhang 
2351b5df2d14SHong Zhang .vb
2352b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2353a4b1a0f6SJed Brown           --------------------------
2354c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2355c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2356c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2357a4b1a0f6SJed Brown           --------------------------
2358b5df2d14SHong Zhang .ve
2359b5df2d14SHong Zhang 
2360b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2361b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
23626d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
23636d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2364b5df2d14SHong Zhang 
23656d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
23666d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2367c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2368c2fc9fa9SBarry Smith 
2369b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2370b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2371b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2372b5df2d14SHong Zhang    matrices.
2373b5df2d14SHong Zhang 
2374b5df2d14SHong Zhang    Level: intermediate
2375b5df2d14SHong Zhang 
2376b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2377b5df2d14SHong Zhang 
2378ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2379b5df2d14SHong Zhang @*/
23807087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2381b5df2d14SHong Zhang {
23824ac538c5SBarry Smith   PetscErrorCode ierr;
2383b5df2d14SHong Zhang 
2384b5df2d14SHong Zhang   PetscFunctionBegin;
23856ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
23866ba663aaSJed Brown   PetscValidType(B,1);
23876ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
23884ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2389b5df2d14SHong Zhang   PetscFunctionReturn(0);
2390b5df2d14SHong Zhang }
2391b5df2d14SHong Zhang 
2392a30f8f8cSSatish Balay /*@C
239369b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2394a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2395a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2396a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2397a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2398a30f8f8cSSatish Balay 
2399a30f8f8cSSatish Balay    Collective on MPI_Comm
2400a30f8f8cSSatish Balay 
2401a30f8f8cSSatish Balay    Input Parameters:
2402a30f8f8cSSatish Balay +  comm - MPI communicator
2403bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2404bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2405a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2406a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2407a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2408a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2409a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2410a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2411a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2412a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2413a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2414a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2415a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
24166d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
24170298fd71SBarry Smith            (possibly different for each block block row) or NULL.
241895742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
241995742e49SBarry Smith            set its value even if it is zero.
2420a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2421a30f8f8cSSatish Balay            submatrix (same for all local rows).
2422a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2423a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
24240298fd71SBarry Smith            each block row) or NULL.
2425a30f8f8cSSatish Balay 
2426a30f8f8cSSatish Balay    Output Parameter:
2427a30f8f8cSSatish Balay .  A - the matrix
2428a30f8f8cSSatish Balay 
2429a30f8f8cSSatish Balay    Options Database Keys:
2430a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2431a30f8f8cSSatish Balay                      block calculations (much slower)
2432a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2433a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2434a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2435a30f8f8cSSatish Balay 
2436175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2437ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2438175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2439175b88e8SBarry Smith 
2440a30f8f8cSSatish Balay    Notes:
2441d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
24426d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2443d1be2dadSMatthew Knepley 
2444a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2445a30f8f8cSSatish Balay    (possibly both).
2446a30f8f8cSSatish Balay 
2447a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2448a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2449a30f8f8cSSatish Balay 
245049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
245149a6f317SBarry Smith 
2452a30f8f8cSSatish Balay    Storage Information:
2453a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2454a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2455a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2456a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2457a30f8f8cSSatish Balay 
2458a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2459a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
24600298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2461a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2462a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2463a30f8f8cSSatish Balay 
2464a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2465a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2466a30f8f8cSSatish Balay 
2467a30f8f8cSSatish Balay .vb
2468a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2469a4b1a0f6SJed Brown           --------------------------
2470c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2471c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2472c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2473a4b1a0f6SJed Brown           --------------------------
2474a30f8f8cSSatish Balay .ve
2475a30f8f8cSSatish Balay 
2476a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2477a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
24786d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24796d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2480a30f8f8cSSatish Balay 
24816d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24826d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2483a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2484a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2485a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2486a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2487a30f8f8cSSatish Balay    matrices.
2488a30f8f8cSSatish Balay 
2489a30f8f8cSSatish Balay    Level: intermediate
2490a30f8f8cSSatish Balay 
2491a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2492a30f8f8cSSatish Balay 
249369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2494a30f8f8cSSatish Balay @*/
2495a30f8f8cSSatish Balay 
249669b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2497a30f8f8cSSatish Balay {
24986849ba73SBarry Smith   PetscErrorCode ierr;
24991302d50aSBarry Smith   PetscMPIInt    size;
2500a30f8f8cSSatish Balay 
2501a30f8f8cSSatish Balay   PetscFunctionBegin;
2502f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2503f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2504273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2505273d9f13SBarry Smith   if (size > 1) {
2506b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2507b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2508273d9f13SBarry Smith   } else {
2509273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2510273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2511273d9f13SBarry Smith   }
2512a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2513a30f8f8cSSatish Balay }
2514a30f8f8cSSatish Balay 
2515a30f8f8cSSatish Balay 
25166849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2517a30f8f8cSSatish Balay {
2518a30f8f8cSSatish Balay   Mat            mat;
2519a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2520dfbe8321SBarry Smith   PetscErrorCode ierr;
2521d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2522387bc808SHong Zhang   PetscScalar    *array;
2523a30f8f8cSSatish Balay 
2524a30f8f8cSSatish Balay   PetscFunctionBegin;
2525a30f8f8cSSatish Balay   *newmat = 0;
252626fbe8dcSKarl Rupp 
2527ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2528d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
25297adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
25301d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
25311e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
25321e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2533e1b6402fSHong Zhang 
2534d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2535273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
253682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
25377fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
25387fff6886SHong Zhang 
2539b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2540a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2541a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2542a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2543a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2544a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2545a30f8f8cSSatish Balay 
2546899cda47SBarry Smith 
2547a30f8f8cSSatish Balay   a->size         = oldmat->size;
2548a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2549a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2550a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2551a30f8f8cSSatish Balay   a->rowindices   = 0;
2552a30f8f8cSSatish Balay   a->rowvalues    = 0;
2553a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2554a30f8f8cSSatish Balay   a->barray       = 0;
2555899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2556899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2557899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2558899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2559a30f8f8cSSatish Balay 
2560a30f8f8cSSatish Balay   /* hash table stuff */
2561a30f8f8cSSatish Balay   a->ht           = 0;
2562a30f8f8cSSatish Balay   a->hd           = 0;
2563a30f8f8cSSatish Balay   a->ht_size      = 0;
2564a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2565a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2566a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2567a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2568a30f8f8cSSatish Balay 
2569899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2570a30f8f8cSSatish Balay   if (oldmat->colmap) {
2571a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2572a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2573a30f8f8cSSatish Balay #else
2574854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
25753bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
25761302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2577a30f8f8cSSatish Balay #endif
2578a30f8f8cSSatish Balay   } else a->colmap = 0;
2579387bc808SHong Zhang 
2580a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2581785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
25823bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
25831302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2584a30f8f8cSSatish Balay   } else a->garray = 0;
2585a30f8f8cSSatish Balay 
2586ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2587a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
25883bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2589a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
25903bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
259182327fa8SHong Zhang 
259282327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
25933bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
259482327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
25953bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2596387bc808SHong Zhang 
2597387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
25981ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2599778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2600778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
26011ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
26021ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2603778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
26041ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
26053bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
26063bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
26073bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
26083bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
26093bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2610387bc808SHong Zhang 
2611387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2612387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2613387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
26143bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
261582327fa8SHong Zhang 
2616a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
26173bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2618a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
26193bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2620140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2621a30f8f8cSSatish Balay   *newmat = mat;
2622a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2623a30f8f8cSSatish Balay }
2624a30f8f8cSSatish Balay 
2625112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
262695936485SShri Abhyankar {
262795936485SShri Abhyankar   PetscErrorCode ierr;
262895936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
262995936485SShri Abhyankar   PetscScalar    *vals,*buf;
2630ce94432eSBarry Smith   MPI_Comm       comm;
263195936485SShri Abhyankar   MPI_Status     status;
2632adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2633adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
263495936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
26353059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
263695936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2637461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
263895936485SShri Abhyankar   int            fd;
2639*7f489da9SVaclav Hapla   PetscBool      isbinary;
264095936485SShri Abhyankar 
264195936485SShri Abhyankar   PetscFunctionBegin;
2642*7f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
2643*7f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
2644*7f489da9SVaclav Hapla 
2645c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2646c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2647ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
26480298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
26490298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
265095936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
26513059b6faSBarry Smith   if (bs < 0) bs = 1;
265295936485SShri Abhyankar 
265395936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
265495936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
265595936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
26565872f025SBarry Smith   if (!rank) {
265795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
265895936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
265902f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
266095936485SShri Abhyankar   }
266195936485SShri Abhyankar 
266295936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
266326fbe8dcSKarl Rupp   M    = header[1];
266426fbe8dcSKarl Rupp   N    = header[2];
266595936485SShri Abhyankar 
266695936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2667461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2668461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
266995936485SShri Abhyankar 
267095936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
267195936485SShri Abhyankar 
267295936485SShri Abhyankar   /*
267395936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
267495936485SShri Abhyankar      divisible by the blocksize
267595936485SShri Abhyankar   */
267695936485SShri Abhyankar   Mbs        = M/bs;
267795936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
267895936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
267995936485SShri Abhyankar   else                  Mbs++;
268095936485SShri Abhyankar   if (extra_rows &&!rank) {
268195936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
268295936485SShri Abhyankar   }
268395936485SShri Abhyankar 
268495936485SShri Abhyankar   /* determine ownership of all rows */
268595936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
268695936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
268795936485SShri Abhyankar     m   = mbs*bs;
268895936485SShri Abhyankar   } else { /* User Set */
268995936485SShri Abhyankar     m   = newmat->rmap->n;
269095936485SShri Abhyankar     mbs = m/bs;
269195936485SShri Abhyankar   }
2692dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
26934dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
269495936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
269595936485SShri Abhyankar   rowners[0] = 0;
269695936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
269795936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
269895936485SShri Abhyankar   rstart = rowners[rank];
269995936485SShri Abhyankar   rend   = rowners[rank+1];
270095936485SShri Abhyankar 
270195936485SShri Abhyankar   /* distribute row lengths to all processors */
2702785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
270395936485SShri Abhyankar   if (!rank) {
2704854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
270595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
270695936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2707785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
270895936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
270995936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
271095936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
271195936485SShri Abhyankar   } else {
271295936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
271395936485SShri Abhyankar   }
271495936485SShri Abhyankar 
271595936485SShri Abhyankar   if (!rank) {   /* procs[0] */
271695936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2717785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
271895936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
271995936485SShri Abhyankar     for (i=0; i<size; i++) {
272095936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
272195936485SShri Abhyankar         procsnz[i] += rowlengths[j];
272295936485SShri Abhyankar       }
272395936485SShri Abhyankar     }
272495936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
272595936485SShri Abhyankar 
272695936485SShri Abhyankar     /* determine max buffer needed and allocate it */
272795936485SShri Abhyankar     maxnz = 0;
272895936485SShri Abhyankar     for (i=0; i<size; i++) {
272995936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
273095936485SShri Abhyankar     }
2731785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
273295936485SShri Abhyankar 
273395936485SShri Abhyankar     /* read in my part of the matrix column indices  */
273495936485SShri Abhyankar     nz     = procsnz[0];
2735785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
273695936485SShri Abhyankar     mycols = ibuf;
273795936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
273895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
273926fbe8dcSKarl Rupp     if (size == 1) {
274026fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
274126fbe8dcSKarl Rupp     }
274295936485SShri Abhyankar 
274395936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
274495936485SShri Abhyankar     for (i=1; i<size-1; i++) {
274595936485SShri Abhyankar       nz   = procsnz[i];
274695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
274795936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
274895936485SShri Abhyankar     }
274995936485SShri Abhyankar     /* read in the stuff for the last proc */
275095936485SShri Abhyankar     if (size != 1) {
275195936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
275295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
275395936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
275495936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
275595936485SShri Abhyankar     }
275695936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
275795936485SShri Abhyankar   } else {  /* procs[i], i>0 */
275895936485SShri Abhyankar     /* determine buffer space needed for message */
275995936485SShri Abhyankar     nz = 0;
276026fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2761785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
276295936485SShri Abhyankar     mycols = ibuf;
276395936485SShri Abhyankar     /* receive message of column indices*/
276495936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
276595936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
276695936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
276795936485SShri Abhyankar   }
276895936485SShri Abhyankar 
276995936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2770dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2771dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
277295936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
277395936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
277495936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
277595936485SShri Abhyankar   rowcount = 0;
277695936485SShri Abhyankar   nzcount  = 0;
277795936485SShri Abhyankar   for (i=0; i<mbs; i++) {
277895936485SShri Abhyankar     dcount  = 0;
277995936485SShri Abhyankar     odcount = 0;
278095936485SShri Abhyankar     for (j=0; j<bs; j++) {
278195936485SShri Abhyankar       kmax = locrowlens[rowcount];
278295936485SShri Abhyankar       for (k=0; k<kmax; k++) {
278395936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
278495936485SShri Abhyankar         if (!mask[tmp]) {
278595936485SShri Abhyankar           mask[tmp] = 1;
278695936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
278795936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
278895936485SShri Abhyankar         }
278995936485SShri Abhyankar       }
279095936485SShri Abhyankar       rowcount++;
279195936485SShri Abhyankar     }
279295936485SShri Abhyankar 
279395936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
279495936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
279595936485SShri Abhyankar 
279695936485SShri Abhyankar     /* zero out the mask elements we set */
279795936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
279895936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
279995936485SShri Abhyankar   }
280095936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
280195936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
28026816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
280395936485SShri Abhyankar 
280495936485SShri Abhyankar   if (!rank) {
2805785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
280695936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
280795936485SShri Abhyankar     nz     = procsnz[0];
280895936485SShri Abhyankar     vals   = buf;
280995936485SShri Abhyankar     mycols = ibuf;
281095936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
281195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
281226fbe8dcSKarl Rupp     if (size == 1) {
281326fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
281426fbe8dcSKarl Rupp     }
281595936485SShri Abhyankar 
281695936485SShri Abhyankar     /* insert into matrix */
281795936485SShri Abhyankar     jj = rstart*bs;
281895936485SShri Abhyankar     for (i=0; i<m; i++) {
281995936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
282095936485SShri Abhyankar       mycols += locrowlens[i];
282195936485SShri Abhyankar       vals   += locrowlens[i];
282295936485SShri Abhyankar       jj++;
282395936485SShri Abhyankar     }
282495936485SShri Abhyankar 
282595936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
282695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
282795936485SShri Abhyankar       nz   = procsnz[i];
282895936485SShri Abhyankar       vals = buf;
282995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
283095936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
283195936485SShri Abhyankar     }
283295936485SShri Abhyankar     /* the last proc */
283395936485SShri Abhyankar     if (size != 1) {
283495936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
283595936485SShri Abhyankar       vals = buf;
283695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
283795936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
283895936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
283995936485SShri Abhyankar     }
284095936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
284195936485SShri Abhyankar 
284295936485SShri Abhyankar   } else {
284395936485SShri Abhyankar     /* receive numeric values */
2844785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
284595936485SShri Abhyankar 
284695936485SShri Abhyankar     /* receive message of values*/
284795936485SShri Abhyankar     vals   = buf;
284895936485SShri Abhyankar     mycols = ibuf;
284995936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
285095936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
285195936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
285295936485SShri Abhyankar 
285395936485SShri Abhyankar     /* insert into matrix */
285495936485SShri Abhyankar     jj = rstart*bs;
285595936485SShri Abhyankar     for (i=0; i<m; i++) {
285695936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
285795936485SShri Abhyankar       mycols += locrowlens[i];
285895936485SShri Abhyankar       vals   += locrowlens[i];
285995936485SShri Abhyankar       jj++;
286095936485SShri Abhyankar     }
286195936485SShri Abhyankar   }
286295936485SShri Abhyankar 
286395936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
286495936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
286595936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
286695936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
286795936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
286895936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
286995936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
287095936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
287195936485SShri Abhyankar   PetscFunctionReturn(0);
287295936485SShri Abhyankar }
287395936485SShri Abhyankar 
2874dcf5cc72SBarry Smith /*XXXXX@
2875a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2876a30f8f8cSSatish Balay 
2877a30f8f8cSSatish Balay    Input Parameters:
2878a30f8f8cSSatish Balay .  mat  - the matrix
2879a30f8f8cSSatish Balay .  fact - factor
2880a30f8f8cSSatish Balay 
2881c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2882a30f8f8cSSatish Balay 
2883a30f8f8cSSatish Balay    Level: advanced
2884a30f8f8cSSatish Balay 
2885a30f8f8cSSatish Balay   Notes:
2886a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2887a30f8f8cSSatish Balay 
2888a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2889a30f8f8cSSatish Balay 
2890a30f8f8cSSatish Balay .seealso: MatSetOption()
2891dcf5cc72SBarry Smith @XXXXX*/
2892dcf5cc72SBarry Smith 
289324d5174aSHong Zhang 
2894985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
289524d5174aSHong Zhang {
289624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2897f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2898ca54ac64SHong Zhang   PetscReal      atmp;
289987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2900dfbe8321SBarry Smith   PetscErrorCode ierr;
29011302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
29021302d50aSBarry Smith   PetscMPIInt    rank,size;
29031302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
290487828ca2SBarry Smith   PetscScalar    *va;
29058a1c53f2SBarry Smith   MatScalar      *ba;
2906f4c0e9e4SHong Zhang   MPI_Status     stat;
290724d5174aSHong Zhang 
290824d5174aSHong Zhang   PetscFunctionBegin;
2909e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
29100298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
29111ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2912f4c0e9e4SHong Zhang 
2913ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2914ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2915f4c0e9e4SHong Zhang 
2916d0f46423SBarry Smith   bs  = A->rmap->bs;
2917f4c0e9e4SHong Zhang   mbs = a->mbs;
2918f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2919f4c0e9e4SHong Zhang   ba  = b->a;
2920f4c0e9e4SHong Zhang   bi  = b->i;
2921f4c0e9e4SHong Zhang   bj  = b->j;
2922f4c0e9e4SHong Zhang 
2923f4c0e9e4SHong Zhang   /* find ownerships */
2924d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2925f4c0e9e4SHong Zhang 
2926f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2927785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2928ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2929f4c0e9e4SHong Zhang 
2930f4c0e9e4SHong Zhang   /* row_max for B */
2931b8475685SHong Zhang   if (rank != size-1) {
2932f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2933f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2934f4c0e9e4SHong Zhang       brow  = bs*i;
2935f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2936f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2937f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2938ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
293904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2940f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2941f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2942ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2943ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2944f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2945f4c0e9e4SHong Zhang           }
2946f4c0e9e4SHong Zhang         }
2947f4c0e9e4SHong Zhang         bj++;
2948f4c0e9e4SHong Zhang       }
2949f4c0e9e4SHong Zhang     }
2950f4c0e9e4SHong Zhang 
2951f4c0e9e4SHong Zhang     /* send values to its owners */
2952f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2953f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2954ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2955ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2956ca54ac64SHong Zhang     }
2957f4c0e9e4SHong Zhang   }
2958f4c0e9e4SHong Zhang 
2959f4c0e9e4SHong Zhang   /* receive values */
2960ca54ac64SHong Zhang   if (rank) {
2961f4c0e9e4SHong Zhang     rvalues = work;
2962ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2963f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2964ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2965f4c0e9e4SHong Zhang       /* process values */
2966f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2967ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2968f4c0e9e4SHong Zhang       }
2969f4c0e9e4SHong Zhang     }
2970ca54ac64SHong Zhang   }
2971f4c0e9e4SHong Zhang 
29721ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2973ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
297424d5174aSHong Zhang   PetscFunctionReturn(0);
297524d5174aSHong Zhang }
29762798e883SHong Zhang 
297741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
29782798e883SHong Zhang {
29792798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2980dfbe8321SBarry Smith   PetscErrorCode    ierr;
2981d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
29823649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2983ffe4fb16SHong Zhang   Vec               bb1;
29843649974fSBarry Smith   const PetscScalar *b;
2985ffe4fb16SHong Zhang 
2986ffe4fb16SHong Zhang   PetscFunctionBegin;
2987e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2988e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2989ffe4fb16SHong Zhang 
2990a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
299141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2992a2b30743SBarry Smith     PetscFunctionReturn(0);
2993a2b30743SBarry Smith   }
2994a2b30743SBarry Smith 
2995ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2996ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
299741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2998ffe4fb16SHong Zhang       its--;
2999ffe4fb16SHong Zhang     }
3000ffe4fb16SHong Zhang 
3001ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
3002ffe4fb16SHong Zhang     while (its--) {
3003ffe4fb16SHong Zhang 
3004ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
3005ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3006ffe4fb16SHong Zhang 
3007ffe4fb16SHong Zhang       /* copy xx into slvec0a */
30081ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
30091ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3010ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
30111ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
3012ffe4fb16SHong Zhang 
3013efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
3014ffe4fb16SHong Zhang 
3015ffe4fb16SHong Zhang       /* copy bb into slvec1a */
30161ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
30173649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
3018ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
30191ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
3020ffe4fb16SHong Zhang 
3021ffe4fb16SHong Zhang       /* set slvec1b = 0 */
3022fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3023ffe4fb16SHong Zhang 
3024ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
30251ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3026a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3027ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3028ffe4fb16SHong Zhang 
3029ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
3030ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
3031ffe4fb16SHong Zhang 
3032ffe4fb16SHong Zhang       /* local diagonal sweep */
303341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
3034ffe4fb16SHong Zhang     }
30356bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
3036fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
303741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3038fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
303941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3040fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
3041fa22f6d0SBarry Smith     Vec               xx1;
3042ace3abfcSBarry Smith     PetscBool         hasop;
304320f1ed55SBarry Smith     const PetscScalar *diag;
3044887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
304520f1ed55SBarry Smith     PetscInt          i,n;
3046fa22f6d0SBarry Smith 
3047fa22f6d0SBarry Smith     if (!mat->xx1) {
3048fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
3049fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
3050fa22f6d0SBarry Smith     }
3051fa22f6d0SBarry Smith     xx1 = mat->xx1;
3052fa22f6d0SBarry Smith     bb1 = mat->bb1;
3053fa22f6d0SBarry Smith 
305441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
3055fa22f6d0SBarry Smith 
3056fa22f6d0SBarry Smith     if (!mat->diag) {
3057effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
30582a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
3059fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
3060fa22f6d0SBarry Smith     }
3061fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
3062fa22f6d0SBarry Smith 
3063fa22f6d0SBarry Smith     if (hasop) {
3064fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
3065887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
306620f1ed55SBarry Smith     } else {
306720f1ed55SBarry Smith       /*
306820f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
306920f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
3070887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
307120f1ed55SBarry Smith       */
307220f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
30733649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
30743649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
307520f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
307620f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
3077887ee2caSBarry Smith       if (omega == 1.0) {
307826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
307920f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
3080887ee2caSBarry Smith       } else {
308126fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
3082887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
3083887ee2caSBarry Smith       }
308420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
30853649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
30863649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
308720f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
308820f1ed55SBarry Smith     }
3089fa22f6d0SBarry Smith 
3090fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
3091fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3092fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3093fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
3094fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3095fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
3096fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
3097fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3098fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3099fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3100effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
3101fa22f6d0SBarry Smith 
3102fa22f6d0SBarry Smith     /* local sweep */
310341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3104fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3105f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3106ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3107ffe4fb16SHong Zhang }
3108ffe4fb16SHong Zhang 
310941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3110ffe4fb16SHong Zhang {
3111ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3112dfbe8321SBarry Smith   PetscErrorCode ierr;
31132798e883SHong Zhang   Vec            lvec1,bb1;
31142798e883SHong Zhang 
31152798e883SHong Zhang   PetscFunctionBegin;
3116e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3117e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
31182798e883SHong Zhang 
3119c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
31202798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
312141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
31222798e883SHong Zhang       its--;
31232798e883SHong Zhang     }
31242798e883SHong Zhang 
31252798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
31262798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
31272798e883SHong Zhang     while (its--) {
3128ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
31292798e883SHong Zhang 
31302798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
31312798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3132efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
31332798e883SHong Zhang 
3134ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
31352798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3136ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
31372798e883SHong Zhang 
31382798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3139efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
31402798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
31412798e883SHong Zhang 
3142ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
31432798e883SHong Zhang 
3144c14dc6b6SHong Zhang       /* diagonal sweep */
314541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
31462798e883SHong Zhang     }
31476bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
31486bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
31496bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
31502798e883SHong Zhang   PetscFunctionReturn(0);
31512798e883SHong Zhang }
31522798e883SHong Zhang 
3153dfb205c3SBarry Smith /*@
3154dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3155dfb205c3SBarry Smith          CSR format the local rows.
3156dfb205c3SBarry Smith 
3157dfb205c3SBarry Smith    Collective on MPI_Comm
3158dfb205c3SBarry Smith 
3159dfb205c3SBarry Smith    Input Parameters:
3160dfb205c3SBarry Smith +  comm - MPI communicator
3161dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3162dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3163dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3164dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3165dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3166dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3167dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3168483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
3169dfb205c3SBarry Smith .   j - column indices
3170dfb205c3SBarry Smith -   a - matrix values
3171dfb205c3SBarry Smith 
3172dfb205c3SBarry Smith    Output Parameter:
3173dfb205c3SBarry Smith .   mat - the matrix
3174dfb205c3SBarry Smith 
3175dfb205c3SBarry Smith    Level: intermediate
3176dfb205c3SBarry Smith 
3177dfb205c3SBarry Smith    Notes:
3178dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3179dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3180dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3181dfb205c3SBarry Smith 
3182dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3183dfb205c3SBarry Smith 
3184dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3185dfb205c3SBarry Smith 
3186dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
318769b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3188dfb205c3SBarry Smith @*/
31897087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3190dfb205c3SBarry Smith {
3191dfb205c3SBarry Smith   PetscErrorCode ierr;
3192dfb205c3SBarry Smith 
3193dfb205c3SBarry Smith 
3194dfb205c3SBarry Smith   PetscFunctionBegin;
3195f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3196dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3197dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3198dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3199dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3200dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3201dfb205c3SBarry Smith   PetscFunctionReturn(0);
3202dfb205c3SBarry Smith }
3203dfb205c3SBarry Smith 
3204dfb205c3SBarry Smith 
3205dfb205c3SBarry Smith /*@C
3206dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3207dfb205c3SBarry Smith    (the default parallel PETSc format).
3208dfb205c3SBarry Smith 
3209dfb205c3SBarry Smith    Collective on MPI_Comm
3210dfb205c3SBarry Smith 
3211dfb205c3SBarry Smith    Input Parameters:
32121c4f3114SJed Brown +  B - the matrix
3213dfb205c3SBarry Smith .  bs - the block size
3214dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3215dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3216dfb205c3SBarry Smith -  v - optional values in the matrix
3217dfb205c3SBarry Smith 
3218dfb205c3SBarry Smith    Level: developer
3219dfb205c3SBarry Smith 
3220dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3221dfb205c3SBarry Smith 
322269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3223dfb205c3SBarry Smith @*/
32247087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3225dfb205c3SBarry Smith {
32264ac538c5SBarry Smith   PetscErrorCode ierr;
3227dfb205c3SBarry Smith 
3228dfb205c3SBarry Smith   PetscFunctionBegin;
32294ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3230dfb205c3SBarry Smith   PetscFunctionReturn(0);
3231dfb205c3SBarry Smith }
3232dfb205c3SBarry Smith 
323310c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
32344dcd73b1SHong Zhang {
32354dcd73b1SHong Zhang   PetscErrorCode ierr;
323610c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
323710c56fdeSHong Zhang   PetscInt       *indx;
323810c56fdeSHong Zhang   PetscScalar    *values;
3239dfb205c3SBarry Smith 
32404dcd73b1SHong Zhang   PetscFunctionBegin;
32414dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
324210c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
324310c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
324410c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
324510c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
32464dcd73b1SHong Zhang 
324710c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
324810c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
324910c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
325010c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
325110c56fdeSHong Zhang     }
325210c56fdeSHong Zhang     /* Check sum(n) = Nbs */
3253b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
325410c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
325510c56fdeSHong Zhang 
325610c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
325710c56fdeSHong Zhang     rstart -= mbs;
32584dcd73b1SHong Zhang 
32594dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
326010c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3261e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
326210c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
32634dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
32644dcd73b1SHong Zhang       nnz = nnz/bs;
32654dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
32664dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
32674dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
32684dcd73b1SHong Zhang     }
3269e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
32704dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
32714dcd73b1SHong Zhang 
32724dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
327310c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
32744dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
32754dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
32764dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
32774dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
32784dcd73b1SHong Zhang   }
32794dcd73b1SHong Zhang 
328010c56fdeSHong Zhang   /* numeric phase */
32814dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
328210c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
32834dcd73b1SHong Zhang 
3284e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
32854dcd73b1SHong Zhang   for (i=0; i<m; i++) {
32864dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
32874dcd73b1SHong Zhang     Ii   = i + rstart;
328810c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
32894dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
32904dcd73b1SHong Zhang   }
3291e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
329210c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
329310c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
32944dcd73b1SHong Zhang   PetscFunctionReturn(0);
32954dcd73b1SHong Zhang }
3296