1a30f8f8cSSatish Balay 2c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 3a30f8f8cSSatish Balay #include "mpisbaij.h" 4a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 5a30f8f8cSSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 91302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 101302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 161302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 17dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay #define CHUNKSIZE 10 76a30f8f8cSSatish Balay 77a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 78a30f8f8cSSatish Balay { \ 79a30f8f8cSSatish Balay \ 80a30f8f8cSSatish Balay brow = row/bs; \ 81a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 82a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 83a30f8f8cSSatish Balay bcol = col/bs; \ 84a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 85a30f8f8cSSatish Balay low = 0; high = nrow; \ 86a30f8f8cSSatish Balay while (high-low > 3) { \ 87a30f8f8cSSatish Balay t = (low+high)/2; \ 88a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 89a30f8f8cSSatish Balay else low = t; \ 90a30f8f8cSSatish Balay } \ 91a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 92a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 93a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 94a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 95a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 96a30f8f8cSSatish Balay else *bap = value; \ 97a30f8f8cSSatish Balay goto a_noinsert; \ 98a30f8f8cSSatish Balay } \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 10177431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 102a30f8f8cSSatish Balay if (nrow >= rmax) { \ 103a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1041302d50aSBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 105a30f8f8cSSatish Balay MatScalar *new_a; \ 106a30f8f8cSSatish Balay \ 10777431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 108a30f8f8cSSatish Balay \ 109a30f8f8cSSatish Balay /* malloc new storage space */ \ 1101302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 11182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1121302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 113a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 114a30f8f8cSSatish Balay \ 115a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 116a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 117a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 1181302d50aSBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 119a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1201302d50aSBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12287828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 124a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay /* free up old matrix storage */ \ 126a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 127a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 128a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 130a30f8f8cSSatish Balay } \ 131a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 132a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 133a30f8f8cSSatish Balay \ 134a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 135a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 1361302d50aSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 1376c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 138a30f8f8cSSatish Balay a->reallocs++; \ 1396c6c5352SBarry Smith a->nz++; \ 140a30f8f8cSSatish Balay } \ 141a30f8f8cSSatish Balay N = nrow++ - 1; \ 142a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 143a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 144a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 145a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 148a30f8f8cSSatish Balay rp[_i] = bcol; \ 149a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 150a30f8f8cSSatish Balay a_noinsert:; \ 151a30f8f8cSSatish Balay ailen[brow] = nrow; \ 152a30f8f8cSSatish Balay } 153a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 154a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 155a30f8f8cSSatish Balay { \ 156a30f8f8cSSatish Balay brow = row/bs; \ 157a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 158a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 159a30f8f8cSSatish Balay bcol = col/bs; \ 160a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 161a30f8f8cSSatish Balay low = 0; high = nrow; \ 162a30f8f8cSSatish Balay while (high-low > 3) { \ 163a30f8f8cSSatish Balay t = (low+high)/2; \ 164a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 165a30f8f8cSSatish Balay else low = t; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 168a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 169a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 170a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 171a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 172a30f8f8cSSatish Balay else *bap = value; \ 173a30f8f8cSSatish Balay goto b_noinsert; \ 174a30f8f8cSSatish Balay } \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 17777431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 178a30f8f8cSSatish Balay if (nrow >= rmax) { \ 179a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 1801302d50aSBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 181a30f8f8cSSatish Balay MatScalar *new_a; \ 182a30f8f8cSSatish Balay \ 18377431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 184a30f8f8cSSatish Balay \ 185a30f8f8cSSatish Balay /* malloc new storage space */ \ 1861302d50aSBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 18782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 1881302d50aSBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 189a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 190a30f8f8cSSatish Balay \ 191a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 192a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 193a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 1941302d50aSBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 195a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1961302d50aSBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 200a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay /* free up old matrix storage */ \ 202a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 203a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 204a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 208a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 209a30f8f8cSSatish Balay \ 210a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 211a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 2121302d50aSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 213a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 214a30f8f8cSSatish Balay b->reallocs++; \ 215a30f8f8cSSatish Balay b->nz++; \ 216a30f8f8cSSatish Balay } \ 217a30f8f8cSSatish Balay N = nrow++ - 1; \ 218a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 219a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 220a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 221a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 224a30f8f8cSSatish Balay rp[_i] = bcol; \ 225a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 226a30f8f8cSSatish Balay b_noinsert:; \ 227a30f8f8cSSatish Balay bilen[brow] = nrow; \ 228a30f8f8cSSatish Balay } 229a30f8f8cSSatish Balay #endif 230a30f8f8cSSatish Balay 231a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 2341302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 235a30f8f8cSSatish Balay { 236a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 2381302d50aSBarry Smith PetscInt i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 2581302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261dfbe8321SBarry Smith PetscErrorCode ierr; 2621302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 263a30f8f8cSSatish Balay MatScalar *vsingle; 264a30f8f8cSSatish Balay 265a30f8f8cSSatish Balay PetscFunctionBegin; 266a30f8f8cSSatish Balay if (N > b->setvalueslen) { 267a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 269a30f8f8cSSatish Balay b->setvalueslen = N; 270a30f8f8cSSatish Balay } 271a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 272a30f8f8cSSatish Balay for (i=0; i<N; i++) { 273a30f8f8cSSatish Balay vsingle[i] = v[i]; 274a30f8f8cSSatish Balay } 275a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 276a30f8f8cSSatish Balay PetscFunctionReturn(0); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay #endif 279a30f8f8cSSatish Balay 280a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 281a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 282a30f8f8cSSatish Balay */ 2834a2ae208SSatish Balay #undef __FUNCT__ 284e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2851302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 286a30f8f8cSSatish Balay { 287a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 288a30f8f8cSSatish Balay MatScalar value; 289b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 290dfbe8321SBarry Smith PetscErrorCode ierr; 2911302d50aSBarry Smith PetscInt i,j,row,col; 2921302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2931302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 294521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 300a30f8f8cSSatish Balay MatScalar *aa=a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 305a30f8f8cSSatish Balay MatScalar *ba=b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 3081302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap,*bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3121302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 313f65c83cfSHong Zhang MatScalar *v_loc=0; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay if(!baij->donotstash){ 3181302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 31982502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay 322a30f8f8cSSatish Balay for (i=0; i<m; i++) { 323a30f8f8cSSatish Balay if (im[i] < 0) continue; 3242515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 32577431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 326a30f8f8cSSatish Balay #endif 327a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 328a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 329a30f8f8cSSatish Balay for (j=0; j<n; j++) { 330f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 331a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 332a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 333a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 334a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 335a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 336a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 337a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 338a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 34077431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 341a30f8f8cSSatish Balay #endif 342a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 343a30f8f8cSSatish Balay if (mat->was_assembled) { 344a30f8f8cSSatish Balay if (!baij->colmap) { 345653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 346a30f8f8cSSatish Balay } 347a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 348a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 34971730473SSatish Balay col = col - 1; 350a30f8f8cSSatish Balay #else 35171730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 352a30f8f8cSSatish Balay #endif 353a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 354a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 355a30f8f8cSSatish Balay col = in[j]; 356a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 357a30f8f8cSSatish Balay B = baij->B; 358a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 359a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 360a30f8f8cSSatish Balay ba=b->a; 36171730473SSatish Balay } else col += in[j]%bs; 362a30f8f8cSSatish Balay } else col = in[j]; 363a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 364a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 365a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 366a30f8f8cSSatish Balay } 367a30f8f8cSSatish Balay } 368a30f8f8cSSatish Balay } else { /* off processor entry */ 369a30f8f8cSSatish Balay if (!baij->donotstash) { 370a30f8f8cSSatish Balay n_loc = 0; 371a30f8f8cSSatish Balay for (j=0; j<n; j++){ 372f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 373a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 374a30f8f8cSSatish Balay if (roworiented) { 375a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 376a30f8f8cSSatish Balay } else { 377a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 378a30f8f8cSSatish Balay } 379a30f8f8cSSatish Balay n_loc++; 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay } 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay 386a30f8f8cSSatish Balay if(!baij->donotstash){ 387a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 388a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 389a30f8f8cSSatish Balay } 390a30f8f8cSSatish Balay PetscFunctionReturn(0); 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay 3934a2ae208SSatish Balay #undef __FUNCT__ 394e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3951302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 396a30f8f8cSSatish Balay { 3970880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 398f15d580aSBarry Smith const MatScalar *value; 399f15d580aSBarry Smith MatScalar *barray=baij->barray; 4000880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 401dfbe8321SBarry Smith PetscErrorCode ierr; 4021302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 4031302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 404521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 4050880e062SHong Zhang 406a30f8f8cSSatish Balay PetscFunctionBegin; 4070880e062SHong Zhang if(!barray) { 4080880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4090880e062SHong Zhang baij->barray = barray; 4100880e062SHong Zhang } 4110880e062SHong Zhang 4120880e062SHong Zhang if (roworiented) { 4130880e062SHong Zhang stepval = (n-1)*bs; 4140880e062SHong Zhang } else { 4150880e062SHong Zhang stepval = (m-1)*bs; 4160880e062SHong Zhang } 4170880e062SHong Zhang for (i=0; i<m; i++) { 4180880e062SHong Zhang if (im[i] < 0) continue; 4192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 42077431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 4210880e062SHong Zhang #endif 4220880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4230880e062SHong Zhang row = im[i] - rstart; 4240880e062SHong Zhang for (j=0; j<n; j++) { 4250880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4260880e062SHong Zhang if ((roworiented) && (n == 1)) { 427f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4280880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 429f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4300880e062SHong Zhang } else { /* Here a copy is required */ 4310880e062SHong Zhang if (roworiented) { 4320880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4330880e062SHong Zhang } else { 4340880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4350880e062SHong Zhang } 4360880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4370880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4380880e062SHong Zhang *barray++ = *value++; 4390880e062SHong Zhang } 4400880e062SHong Zhang } 4410880e062SHong Zhang barray -=bs2; 4420880e062SHong Zhang } 4430880e062SHong Zhang 4440880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4450880e062SHong Zhang col = in[j] - cstart; 4460880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4470880e062SHong Zhang } 4480880e062SHong Zhang else if (in[j] < 0) continue; 4492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 45077431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 4510880e062SHong Zhang #endif 4520880e062SHong Zhang else { 4530880e062SHong Zhang if (mat->was_assembled) { 4540880e062SHong Zhang if (!baij->colmap) { 455653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4560880e062SHong Zhang } 4570880e062SHong Zhang 4582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 4590880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4601302d50aSBarry Smith { PetscInt data; 4610880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4620880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4630880e062SHong Zhang } 4640880e062SHong Zhang #else 4650880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4660880e062SHong Zhang #endif 4670880e062SHong Zhang #endif 4680880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4690880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4700880e062SHong Zhang col = (col - 1)/bs; 4710880e062SHong Zhang #else 4720880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4730880e062SHong Zhang #endif 4740880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4750880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4760880e062SHong Zhang col = in[j]; 4770880e062SHong Zhang } 4780880e062SHong Zhang } 4790880e062SHong Zhang else col = in[j]; 480e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4810880e062SHong Zhang } 4820880e062SHong Zhang } 4830880e062SHong Zhang } else { 4840880e062SHong Zhang if (!baij->donotstash) { 4850880e062SHong Zhang if (roworiented) { 4860880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4870880e062SHong Zhang } else { 4880880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4890880e062SHong Zhang } 4900880e062SHong Zhang } 4910880e062SHong Zhang } 4920880e062SHong Zhang } 4930880e062SHong Zhang PetscFunctionReturn(0); 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay 4964a2ae208SSatish Balay #undef __FUNCT__ 4974a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4981302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 499a30f8f8cSSatish Balay { 500f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 5016849ba73SBarry Smith PetscErrorCode ierr; 502521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 5031302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 504a30f8f8cSSatish Balay 505a30f8f8cSSatish Balay PetscFunctionBegin; 506a30f8f8cSSatish Balay for (i=0; i<m; i++) { 50777431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 50877431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 509a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 510a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 511a30f8f8cSSatish Balay for (j=0; j<n; j++) { 51277431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 51377431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 514a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 515a30f8f8cSSatish Balay col = idxn[j] - bscstart; 516c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 517a30f8f8cSSatish Balay } else { 518a30f8f8cSSatish Balay if (!baij->colmap) { 519653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 520a30f8f8cSSatish Balay } 521a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 522a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 523a30f8f8cSSatish Balay data --; 524a30f8f8cSSatish Balay #else 525a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 526a30f8f8cSSatish Balay #endif 527a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 528a30f8f8cSSatish Balay else { 529a30f8f8cSSatish Balay col = data + idxn[j]%bs; 530e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 531a30f8f8cSSatish Balay } 532a30f8f8cSSatish Balay } 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay } else { 53529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay PetscFunctionReturn(0); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay 5414a2ae208SSatish Balay #undef __FUNCT__ 5424a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 543dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 544a30f8f8cSSatish Balay { 545a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 546dfbe8321SBarry Smith PetscErrorCode ierr; 547a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 548a30f8f8cSSatish Balay 549a30f8f8cSSatish Balay PetscFunctionBegin; 550a30f8f8cSSatish Balay if (baij->size == 1) { 551a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 552a30f8f8cSSatish Balay } else { 553a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 554f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 555a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 556a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 557a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 558a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 559d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 561a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 562a30f8f8cSSatish Balay } else { 56329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay PetscFunctionReturn(0); 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 571dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 572a30f8f8cSSatish Balay { 573a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 5751302d50aSBarry Smith PetscInt nstash,reallocs; 576a30f8f8cSSatish Balay InsertMode addv; 577a30f8f8cSSatish Balay 578a30f8f8cSSatish Balay PetscFunctionBegin; 579a30f8f8cSSatish Balay if (baij->donotstash) { 580a30f8f8cSSatish Balay PetscFunctionReturn(0); 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay 583a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 584a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 585a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 58629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 589a30f8f8cSSatish Balay 590a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 591a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 592a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 59377431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs); 594a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 59577431f27SBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs); 596a30f8f8cSSatish Balay PetscFunctionReturn(0); 597a30f8f8cSSatish Balay } 598a30f8f8cSSatish Balay 5994a2ae208SSatish Balay #undef __FUNCT__ 6004a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 601dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 602a30f8f8cSSatish Balay { 603a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 604a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 605a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 6066849ba73SBarry Smith PetscErrorCode ierr; 60713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 6081302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 60913f74950SBarry Smith PetscMPIInt n; 610a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 611a30f8f8cSSatish Balay MatScalar *val; 612a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay PetscFunctionBegin; 615a30f8f8cSSatish Balay 616a30f8f8cSSatish Balay if (!baij->donotstash) { 617a30f8f8cSSatish Balay while (1) { 618a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 619a30f8f8cSSatish Balay if (!flg) break; 620a30f8f8cSSatish Balay 621a30f8f8cSSatish Balay for (i=0; i<n;) { 622a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 623a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 624a30f8f8cSSatish Balay if (j < n) ncols = j-i; 625a30f8f8cSSatish Balay else ncols = n-i; 626a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 627a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 628a30f8f8cSSatish Balay i = j; 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay } 631a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 632a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 633a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 634a30f8f8cSSatish Balay restore the original flags */ 635a30f8f8cSSatish Balay r1 = baij->roworiented; 636a30f8f8cSSatish Balay r2 = a->roworiented; 637a30f8f8cSSatish Balay r3 = b->roworiented; 638a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 639a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 640a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 641a30f8f8cSSatish Balay while (1) { 642a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 643a30f8f8cSSatish Balay if (!flg) break; 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay for (i=0; i<n;) { 646a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 647a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 648a30f8f8cSSatish Balay if (j < n) ncols = j-i; 649a30f8f8cSSatish Balay else ncols = n-i; 650a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 651a30f8f8cSSatish Balay i = j; 652a30f8f8cSSatish Balay } 653a30f8f8cSSatish Balay } 654a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 655a30f8f8cSSatish Balay baij->roworiented = r1; 656a30f8f8cSSatish Balay a->roworiented = r2; 657a30f8f8cSSatish Balay b->roworiented = r3; 658a30f8f8cSSatish Balay } 659a30f8f8cSSatish Balay 660a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 661a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 662a30f8f8cSSatish Balay 663a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 664a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 665a30f8f8cSSatish Balay /* 666a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 667a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 668a30f8f8cSSatish Balay */ 669a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 670a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 671a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 672c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 673a30f8f8cSSatish Balay } 674a30f8f8cSSatish Balay } 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 67740781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 678a30f8f8cSSatish Balay } 6794eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 680a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 682a30f8f8cSSatish Balay 683a30f8f8cSSatish Balay if (baij->rowvalues) { 684a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 685a30f8f8cSSatish Balay baij->rowvalues = 0; 686a30f8f8cSSatish Balay } 6875222a1afSHong Zhang 688a30f8f8cSSatish Balay PetscFunctionReturn(0); 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay 6914a2ae208SSatish Balay #undef __FUNCT__ 6924a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6936849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 694a30f8f8cSSatish Balay { 695a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 696dfbe8321SBarry Smith PetscErrorCode ierr; 697521d7252SBarry Smith PetscInt bs = mat->bs; 6981302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 69932077d6dSBarry Smith PetscTruth iascii,isdraw; 700b0a32e0cSBarry Smith PetscViewer sviewer; 701f3ef73ceSBarry Smith PetscViewerFormat format; 702a30f8f8cSSatish Balay 703a30f8f8cSSatish Balay PetscFunctionBegin; 70432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 705fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 70632077d6dSBarry Smith if (iascii) { 707b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 708456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 709a30f8f8cSSatish Balay MatInfo info; 710a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 711a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 71277431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 71377431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 714521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 71677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 71877431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 719b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 721a30f8f8cSSatish Balay PetscFunctionReturn(0); 722fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 72377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 724a30f8f8cSSatish Balay PetscFunctionReturn(0); 725a30f8f8cSSatish Balay } 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay 728a30f8f8cSSatish Balay if (isdraw) { 729b0a32e0cSBarry Smith PetscDraw draw; 730a30f8f8cSSatish Balay PetscTruth isnull; 731b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 732b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 733a30f8f8cSSatish Balay } 734a30f8f8cSSatish Balay 735a30f8f8cSSatish Balay if (size == 1) { 736e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 737a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 738a30f8f8cSSatish Balay } else { 739a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 740a30f8f8cSSatish Balay Mat A; 74165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7431302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 744a30f8f8cSSatish Balay MatScalar *a; 745a30f8f8cSSatish Balay 746f204ca49SKris Buschelman /* Should this be the same type as mat? */ 747a30f8f8cSSatish Balay if (!rank) { 748f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 749a30f8f8cSSatish Balay } else { 750f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 751a30f8f8cSSatish Balay } 752f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 753521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 754b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 755a30f8f8cSSatish Balay 756a30f8f8cSSatish Balay /* copy over the A part */ 75765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 758a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7591302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 760a30f8f8cSSatish Balay 761a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 762a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 763a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 764a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 765a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 766a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 767a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 768a30f8f8cSSatish Balay col++; a += bs; 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay /* copy over the B part */ 77365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 775a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 776a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 777a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 778a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 779a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 780a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 781a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 782a30f8f8cSSatish Balay col++; a += bs; 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay } 786a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 789a30f8f8cSSatish Balay /* 790a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 791b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 792a30f8f8cSSatish Balay */ 793b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79465d70643SHong Zhang if (!rank) { 795e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 796a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 797a30f8f8cSSatish Balay } 798b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 799a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 800a30f8f8cSSatish Balay } 801a30f8f8cSSatish Balay PetscFunctionReturn(0); 802a30f8f8cSSatish Balay } 803a30f8f8cSSatish Balay 8044a2ae208SSatish Balay #undef __FUNCT__ 8054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 806dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 807a30f8f8cSSatish Balay { 808dfbe8321SBarry Smith PetscErrorCode ierr; 80932077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 810a30f8f8cSSatish Balay 811a30f8f8cSSatish Balay PetscFunctionBegin; 81232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 813fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 814b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 815fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 81632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 817a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 818a30f8f8cSSatish Balay } else { 8191302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay PetscFunctionReturn(0); 822a30f8f8cSSatish Balay } 823a30f8f8cSSatish Balay 8244a2ae208SSatish Balay #undef __FUNCT__ 8254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 826dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 827a30f8f8cSSatish Balay { 828a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 829dfbe8321SBarry Smith PetscErrorCode ierr; 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay PetscFunctionBegin; 832a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 83377431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 834a30f8f8cSSatish Balay #endif 835a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 836a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 837a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 838a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 839a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 840a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 841a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 842a30f8f8cSSatish Balay #else 843a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 844a30f8f8cSSatish Balay #endif 845a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 846a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 847a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 84840781036SHong Zhang if (baij->slvec0) { 84940781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 85040781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 85140781036SHong Zhang } 85240781036SHong Zhang if (baij->slvec1) { 85340781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 85440781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 85540781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 85640781036SHong Zhang } 85740781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 860a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 861a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 862a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 863a30f8f8cSSatish Balay #endif 864a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 865901853e0SKris Buschelman 866901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 867901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 868901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 869901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 870a30f8f8cSSatish Balay PetscFunctionReturn(0); 871a30f8f8cSSatish Balay } 872a30f8f8cSSatish Balay 8734a2ae208SSatish Balay #undef __FUNCT__ 874a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 875dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 876a9d4b620SHong Zhang { 877a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 878dfbe8321SBarry Smith PetscErrorCode ierr; 879521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 880a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 881a9d4b620SHong Zhang 882a9d4b620SHong Zhang PetscFunctionBegin; 883a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 884a9d4b620SHong Zhang if (nt != A->n) { 885a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 886a9d4b620SHong Zhang } 887a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 888a9d4b620SHong Zhang if (nt != A->m) { 889a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 890a9d4b620SHong Zhang } 891a9d4b620SHong Zhang 892a9d4b620SHong Zhang /* diagonal part */ 893a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 894a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 895a9d4b620SHong Zhang 896a9d4b620SHong Zhang /* subdiagonal part */ 897a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 898a9d4b620SHong Zhang 899a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9001ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9011ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 902a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9031ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 904a9d4b620SHong Zhang 905a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9061ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 907a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 908a9d4b620SHong Zhang 909a9d4b620SHong Zhang /* supperdiagonal part */ 910a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 911a9d4b620SHong Zhang 912a9d4b620SHong Zhang PetscFunctionReturn(0); 913a9d4b620SHong Zhang } 914a9d4b620SHong Zhang 915a9d4b620SHong Zhang #undef __FUNCT__ 91640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 917dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 918a30f8f8cSSatish Balay { 919a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 920dfbe8321SBarry Smith PetscErrorCode ierr; 9211302d50aSBarry Smith PetscInt nt; 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay PetscFunctionBegin; 924a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 925b5df2d14SHong Zhang if (nt != A->n) { 92629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 927a30f8f8cSSatish Balay } 928a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 929b5df2d14SHong Zhang if (nt != A->m) { 93029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 931a30f8f8cSSatish Balay } 93265d70643SHong Zhang 933b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 934b941877fSHong Zhang /* do diagonal part */ 935b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 936b941877fSHong Zhang /* do supperdiagonal part */ 937b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 938b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 939b941877fSHong Zhang /* do subdiagonal part */ 940b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 941b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 942b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 94365d70643SHong Zhang 944a30f8f8cSSatish Balay PetscFunctionReturn(0); 945a30f8f8cSSatish Balay } 946a30f8f8cSSatish Balay 9474a2ae208SSatish Balay #undef __FUNCT__ 9484a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 949dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 950a30f8f8cSSatish Balay { 951de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 952dfbe8321SBarry Smith PetscErrorCode ierr; 953521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 954a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 955a9d4b620SHong Zhang 956a9d4b620SHong Zhang PetscFunctionBegin; 957a9d4b620SHong Zhang /* 95856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 95956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 960a9d4b620SHong Zhang */ 961a9d4b620SHong Zhang /* diagonal part */ 962a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 963a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 964a9d4b620SHong Zhang 965a9d4b620SHong Zhang /* subdiagonal part */ 966a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9691ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9701ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 971a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9721ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 973a9d4b620SHong Zhang 974a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9751ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 976a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 977a9d4b620SHong Zhang 978a9d4b620SHong Zhang /* supperdiagonal part */ 979a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 980a9d4b620SHong Zhang 981a9d4b620SHong Zhang PetscFunctionReturn(0); 982a9d4b620SHong Zhang } 983a9d4b620SHong Zhang 984a9d4b620SHong Zhang #undef __FUNCT__ 985a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 986dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 987a9d4b620SHong Zhang { 988a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 989dfbe8321SBarry Smith PetscErrorCode ierr; 990a30f8f8cSSatish Balay 991a30f8f8cSSatish Balay PetscFunctionBegin; 992b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 993b941877fSHong Zhang /* do diagonal part */ 994b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 995b941877fSHong Zhang /* do supperdiagonal part */ 996b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 997de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 998de8b6608SHong Zhang 999b941877fSHong Zhang /* do subdiagonal part */ 1000a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1001a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1002a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1003aa482183SHong Zhang 1004a30f8f8cSSatish Balay PetscFunctionReturn(0); 1005a30f8f8cSSatish Balay } 1006a30f8f8cSSatish Balay 10074a2ae208SSatish Balay #undef __FUNCT__ 10084a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1009dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1010a30f8f8cSSatish Balay { 1011dfbe8321SBarry Smith PetscErrorCode ierr; 10125a7c0312SHong Zhang 1013a30f8f8cSSatish Balay PetscFunctionBegin; 10145a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10155a7c0312SHong Zhang PetscFunctionReturn(0); 1016a30f8f8cSSatish Balay } 1017a30f8f8cSSatish Balay 10184a2ae208SSatish Balay #undef __FUNCT__ 10194a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1020dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1021a30f8f8cSSatish Balay { 1022dfbe8321SBarry Smith PetscErrorCode ierr; 10235a7c0312SHong Zhang 1024a30f8f8cSSatish Balay PetscFunctionBegin; 10255a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10265a7c0312SHong Zhang PetscFunctionReturn(0); 1027a30f8f8cSSatish Balay } 1028a30f8f8cSSatish Balay 1029a30f8f8cSSatish Balay /* 1030a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1031a30f8f8cSSatish Balay diagonal block 1032a30f8f8cSSatish Balay */ 10334a2ae208SSatish Balay #undef __FUNCT__ 10344a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1035dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1036a30f8f8cSSatish Balay { 1037a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1038dfbe8321SBarry Smith PetscErrorCode ierr; 1039a30f8f8cSSatish Balay 1040a30f8f8cSSatish Balay PetscFunctionBegin; 104129bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1042a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1043a30f8f8cSSatish Balay PetscFunctionReturn(0); 1044a30f8f8cSSatish Balay } 1045a30f8f8cSSatish Balay 10464a2ae208SSatish Balay #undef __FUNCT__ 10474a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1048dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1049a30f8f8cSSatish Balay { 1050a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1051dfbe8321SBarry Smith PetscErrorCode ierr; 1052a30f8f8cSSatish Balay 1053a30f8f8cSSatish Balay PetscFunctionBegin; 1054a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1055a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1056a30f8f8cSSatish Balay PetscFunctionReturn(0); 1057a30f8f8cSSatish Balay } 1058a30f8f8cSSatish Balay 10594a2ae208SSatish Balay #undef __FUNCT__ 10604a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10611302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1062a30f8f8cSSatish Balay { 1063a30f8f8cSSatish Balay PetscFunctionBegin; 1064*80e57f9fSHong Zhang SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format"); 1065a30f8f8cSSatish Balay PetscFunctionReturn(0); 1066a30f8f8cSSatish Balay } 1067a30f8f8cSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10701302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1071a30f8f8cSSatish Balay { 1072a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1073a30f8f8cSSatish Balay 1074a30f8f8cSSatish Balay PetscFunctionBegin; 1075abc0a331SBarry Smith if (!baij->getrowactive) { 1076abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1077a30f8f8cSSatish Balay } 1078a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1079a30f8f8cSSatish Balay PetscFunctionReturn(0); 1080a30f8f8cSSatish Balay } 1081a30f8f8cSSatish Balay 10824a2ae208SSatish Balay #undef __FUNCT__ 10834a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1084dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1085a30f8f8cSSatish Balay { 1086a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1087dfbe8321SBarry Smith PetscErrorCode ierr; 1088a30f8f8cSSatish Balay 1089a30f8f8cSSatish Balay PetscFunctionBegin; 1090a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1091a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1092a30f8f8cSSatish Balay PetscFunctionReturn(0); 1093a30f8f8cSSatish Balay } 1094a30f8f8cSSatish Balay 10954a2ae208SSatish Balay #undef __FUNCT__ 10964a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1097dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1098a30f8f8cSSatish Balay { 1099a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1100a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 1102a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1103a30f8f8cSSatish Balay 1104a30f8f8cSSatish Balay PetscFunctionBegin; 1105521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1106a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1107a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1108a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1109a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1110a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1111a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1112a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1113a30f8f8cSSatish Balay info->nz_used = isend[0]; 1114a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1115a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1116a30f8f8cSSatish Balay info->memory = isend[3]; 1117a30f8f8cSSatish Balay info->mallocs = isend[4]; 1118a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1119d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1120a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1121a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1122a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1123a30f8f8cSSatish Balay info->memory = irecv[3]; 1124a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1125a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1126d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1127a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1128a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1129a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1130a30f8f8cSSatish Balay info->memory = irecv[3]; 1131a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1132a30f8f8cSSatish Balay } else { 113377431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1134a30f8f8cSSatish Balay } 1135f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1136f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1137f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1138f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1139a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1140a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1141a30f8f8cSSatish Balay info->factor_mallocs = 0; 1142a30f8f8cSSatish Balay PetscFunctionReturn(0); 1143a30f8f8cSSatish Balay } 1144a30f8f8cSSatish Balay 11454a2ae208SSatish Balay #undef __FUNCT__ 11464a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1147dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1148a30f8f8cSSatish Balay { 1149a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1150dfbe8321SBarry Smith PetscErrorCode ierr; 1151a30f8f8cSSatish Balay 1152a30f8f8cSSatish Balay PetscFunctionBegin; 1153e98b92d7SKris Buschelman switch (op) { 1154e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1155e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1156e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1157e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1158e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1159e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1160e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1161a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1162a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1163e98b92d7SKris Buschelman break; 1164e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1165a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1166a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1168e98b92d7SKris Buschelman break; 1169e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1170e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1171e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1172b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1173e98b92d7SKris Buschelman break; 1174e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1175a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1176a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1178e98b92d7SKris Buschelman break; 1179e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1180a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1181e98b92d7SKris Buschelman break; 1182e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 118329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1184e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1185a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1186e98b92d7SKris Buschelman break; 11879a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 11889a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 11899a4540c5SBarry Smith case MAT_HERMITIAN: 11909a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 119177e54ba9SKris Buschelman case MAT_SYMMETRIC: 119277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 11939a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 11949a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 11959a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 119677e54ba9SKris Buschelman break; 1197e98b92d7SKris Buschelman default: 119829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1199a30f8f8cSSatish Balay } 1200a30f8f8cSSatish Balay PetscFunctionReturn(0); 1201a30f8f8cSSatish Balay } 1202a30f8f8cSSatish Balay 12034a2ae208SSatish Balay #undef __FUNCT__ 12048115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1205dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1206a30f8f8cSSatish Balay { 1207dfbe8321SBarry Smith PetscErrorCode ierr; 1208a30f8f8cSSatish Balay PetscFunctionBegin; 1209999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 12108115998fSBarry Smith PetscFunctionReturn(0); 1211a30f8f8cSSatish Balay } 1212a30f8f8cSSatish Balay 12134a2ae208SSatish Balay #undef __FUNCT__ 12144a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1215dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1216a30f8f8cSSatish Balay { 1217a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1218a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1219dfbe8321SBarry Smith PetscErrorCode ierr; 12201302d50aSBarry Smith PetscInt s1,s2,s3; 1221a30f8f8cSSatish Balay 1222a30f8f8cSSatish Balay PetscFunctionBegin; 1223a30f8f8cSSatish Balay if (ll != rr) { 122429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1227a30f8f8cSSatish Balay if (rr) { 1228a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 122929bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1230a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1231a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1232a30f8f8cSSatish Balay /*} if (ll) { */ 1233a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 123429bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1235a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1236a30f8f8cSSatish Balay /* } */ 1237a30f8f8cSSatish Balay /* scale the diagonal block */ 1238a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1239a30f8f8cSSatish Balay 1240a30f8f8cSSatish Balay /* if (rr) { */ 1241a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1242a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1243a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1244a30f8f8cSSatish Balay } 1245a30f8f8cSSatish Balay 1246a30f8f8cSSatish Balay PetscFunctionReturn(0); 1247a30f8f8cSSatish Balay } 1248a30f8f8cSSatish Balay 12494a2ae208SSatish Balay #undef __FUNCT__ 12504a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1251dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1252a30f8f8cSSatish Balay { 1253a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1254a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 12551302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1256dfbe8321SBarry Smith PetscErrorCode ierr; 1257a30f8f8cSSatish Balay 1258a30f8f8cSSatish Balay PetscFunctionBegin; 1259a30f8f8cSSatish Balay if (!a->rank) { 1260a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay } 12621302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1263a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1264a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1265a30f8f8cSSatish Balay PetscFunctionReturn(0); 1266a30f8f8cSSatish Balay } 1267a30f8f8cSSatish Balay 12684a2ae208SSatish Balay #undef __FUNCT__ 12694a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1270dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1271a30f8f8cSSatish Balay { 1272f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1273dfbe8321SBarry Smith PetscErrorCode ierr; 1274a30f8f8cSSatish Balay 1275a30f8f8cSSatish Balay PetscFunctionBegin; 1276a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1277a30f8f8cSSatish Balay PetscFunctionReturn(0); 1278a30f8f8cSSatish Balay } 1279a30f8f8cSSatish Balay 12806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1281a30f8f8cSSatish Balay 12824a2ae208SSatish Balay #undef __FUNCT__ 12834a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1284dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1285a30f8f8cSSatish Balay { 1286a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1287a30f8f8cSSatish Balay Mat a,b,c,d; 1288a30f8f8cSSatish Balay PetscTruth flg; 1289dfbe8321SBarry Smith PetscErrorCode ierr; 1290a30f8f8cSSatish Balay 1291a30f8f8cSSatish Balay PetscFunctionBegin; 1292a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1293a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1294a30f8f8cSSatish Balay 1295a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1296abc0a331SBarry Smith if (flg) { 1297a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1298a30f8f8cSSatish Balay } 1299a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1300a30f8f8cSSatish Balay PetscFunctionReturn(0); 1301a30f8f8cSSatish Balay } 1302a30f8f8cSSatish Balay 13034a2ae208SSatish Balay #undef __FUNCT__ 13044a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1305dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1306273d9f13SBarry Smith { 1307dfbe8321SBarry Smith PetscErrorCode ierr; 1308273d9f13SBarry Smith 1309273d9f13SBarry Smith PetscFunctionBegin; 1310273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1311273d9f13SBarry Smith PetscFunctionReturn(0); 1312273d9f13SBarry Smith } 1313a5e6ed63SBarry Smith 1314a5e6ed63SBarry Smith #undef __FUNCT__ 1315a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13161302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1317a5e6ed63SBarry Smith { 13186849ba73SBarry Smith PetscErrorCode ierr; 13191302d50aSBarry Smith PetscInt i; 1320a5e6ed63SBarry Smith PetscTruth flg; 1321a5e6ed63SBarry Smith 13226849ba73SBarry Smith PetscFunctionBegin; 1323a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1324a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1325a5e6ed63SBarry Smith if (!flg) { 13261302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1327a5e6ed63SBarry Smith } 1328a5e6ed63SBarry Smith } 1329a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1330a5e6ed63SBarry Smith PetscFunctionReturn(0); 1331a5e6ed63SBarry Smith } 1332a5e6ed63SBarry Smith 1333a5e6ed63SBarry Smith 1334a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1335a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1336a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1337a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1338a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1339a9d4b620SHong Zhang MatMult_MPISBAIJ, 134097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1341a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1342a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1343a30f8f8cSSatish Balay 0, 1344a30f8f8cSSatish Balay 0, 1345a30f8f8cSSatish Balay 0, 134697304618SKris Buschelman /*10*/ 0, 1347a30f8f8cSSatish Balay 0, 1348a30f8f8cSSatish Balay 0, 13492798e883SHong Zhang MatRelax_MPISBAIJ, 1350a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 135197304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1352a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1353a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1354a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1355a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 135697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1357a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1358a30f8f8cSSatish Balay 0, 1359a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1360a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1361dcf5cc72SBarry Smith /*25*/ 0, 1362a30f8f8cSSatish Balay 0, 1363a30f8f8cSSatish Balay 0, 1364a30f8f8cSSatish Balay 0, 1365a30f8f8cSSatish Balay 0, 136697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1367b5df2d14SHong Zhang 0, 1368a30f8f8cSSatish Balay 0, 1369a30f8f8cSSatish Balay 0, 1370a30f8f8cSSatish Balay 0, 137197304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1372a30f8f8cSSatish Balay 0, 1373a30f8f8cSSatish Balay 0, 1374a30f8f8cSSatish Balay 0, 1375a30f8f8cSSatish Balay 0, 137697304618SKris Buschelman /*40*/ 0, 1377a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1378d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1379a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1380a30f8f8cSSatish Balay 0, 138197304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1382a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1383a30f8f8cSSatish Balay 0, 1384a30f8f8cSSatish Balay 0, 1385a30f8f8cSSatish Balay 0, 1386521d7252SBarry Smith /*50*/ 0, 1387a30f8f8cSSatish Balay 0, 1388a30f8f8cSSatish Balay 0, 1389a30f8f8cSSatish Balay 0, 1390a30f8f8cSSatish Balay 0, 139197304618SKris Buschelman /*55*/ 0, 1392a30f8f8cSSatish Balay 0, 1393a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1394a30f8f8cSSatish Balay 0, 1395a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 139697304618SKris Buschelman /*60*/ 0, 1397a30f8f8cSSatish Balay 0, 1398a30f8f8cSSatish Balay 0, 13998a124369SBarry Smith MatGetPetscMaps_Petsc, 140024d5174aSHong Zhang 0, 140197304618SKris Buschelman /*65*/ 0, 140224d5174aSHong Zhang 0, 140324d5174aSHong Zhang 0, 140424d5174aSHong Zhang 0, 140524d5174aSHong Zhang 0, 140697304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 140724d5174aSHong Zhang 0, 140897304618SKris Buschelman 0, 140997304618SKris Buschelman 0, 141097304618SKris Buschelman 0, 141197304618SKris Buschelman /*75*/ 0, 141297304618SKris Buschelman 0, 141397304618SKris Buschelman 0, 141497304618SKris Buschelman 0, 141597304618SKris Buschelman 0, 141697304618SKris Buschelman /*80*/ 0, 141797304618SKris Buschelman 0, 141897304618SKris Buschelman 0, 141997304618SKris Buschelman 0, 1420865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1421865e5f61SKris Buschelman /*85*/ 0, 1422865e5f61SKris Buschelman 0, 1423865e5f61SKris Buschelman 0, 1424865e5f61SKris Buschelman 0, 1425865e5f61SKris Buschelman 0, 1426865e5f61SKris Buschelman /*90*/ 0, 1427865e5f61SKris Buschelman 0, 1428865e5f61SKris Buschelman 0, 1429865e5f61SKris Buschelman 0, 1430865e5f61SKris Buschelman 0, 1431865e5f61SKris Buschelman /*95*/ 0, 1432865e5f61SKris Buschelman 0, 1433865e5f61SKris Buschelman 0, 1434865e5f61SKris Buschelman 0}; 1435a30f8f8cSSatish Balay 1436a30f8f8cSSatish Balay 1437a30f8f8cSSatish Balay EXTERN_C_BEGIN 14384a2ae208SSatish Balay #undef __FUNCT__ 14394a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1440dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1441a30f8f8cSSatish Balay { 1442a30f8f8cSSatish Balay PetscFunctionBegin; 1443a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1444a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1445a30f8f8cSSatish Balay PetscFunctionReturn(0); 1446a30f8f8cSSatish Balay } 1447a30f8f8cSSatish Balay EXTERN_C_END 1448a30f8f8cSSatish Balay 1449273d9f13SBarry Smith EXTERN_C_BEGIN 14504a2ae208SSatish Balay #undef __FUNCT__ 1451a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 14521302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1453a23d5eceSKris Buschelman { 1454a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1455dfbe8321SBarry Smith PetscErrorCode ierr; 14561302d50aSBarry Smith PetscInt i,mbs,Mbs; 1457a23d5eceSKris Buschelman 1458a23d5eceSKris Buschelman PetscFunctionBegin; 1459a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1460a23d5eceSKris Buschelman 1461a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1462a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1463a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 146477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 146577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1466a23d5eceSKris Buschelman if (d_nnz) { 1467a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 146877431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1469a23d5eceSKris Buschelman } 1470a23d5eceSKris Buschelman } 1471a23d5eceSKris Buschelman if (o_nnz) { 1472a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 147377431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1474a23d5eceSKris Buschelman } 1475a23d5eceSKris Buschelman } 1476a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1477a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1478a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1479a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1480a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1481a23d5eceSKris Buschelman 1482a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1483a23d5eceSKris Buschelman mbs = B->m/bs; 1484a23d5eceSKris Buschelman Mbs = B->M/bs; 1485a23d5eceSKris Buschelman if (mbs*bs != B->m) { 148677431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1487a23d5eceSKris Buschelman } 1488a23d5eceSKris Buschelman 1489521d7252SBarry Smith B->bs = bs; 1490a23d5eceSKris Buschelman b->bs2 = bs*bs; 1491a23d5eceSKris Buschelman b->mbs = mbs; 1492a23d5eceSKris Buschelman b->nbs = mbs; 1493a23d5eceSKris Buschelman b->Mbs = Mbs; 1494a23d5eceSKris Buschelman b->Nbs = Mbs; 1495a23d5eceSKris Buschelman 1496a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1497a23d5eceSKris Buschelman b->rowners[0] = 0; 1498a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1499a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1500a23d5eceSKris Buschelman } 1501a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1502a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1503a23d5eceSKris Buschelman b->cstart = b->rstart; 1504a23d5eceSKris Buschelman b->cend = b->rend; 1505a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1506a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1507a23d5eceSKris Buschelman } 1508a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1509a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1510a23d5eceSKris Buschelman 1511a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1512a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1513a23d5eceSKris Buschelman 15149c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 15159c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1516c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 15179c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 15189c097c71SKris Buschelman 15199c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 15204aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1521589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 15229c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1523a23d5eceSKris Buschelman 1524a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1525a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1526a23d5eceSKris Buschelman 1527a23d5eceSKris Buschelman PetscFunctionReturn(0); 1528a23d5eceSKris Buschelman } 1529a23d5eceSKris Buschelman EXTERN_C_END 1530a23d5eceSKris Buschelman 15310bad9183SKris Buschelman /*MC 1532fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 15330bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 15340bad9183SKris Buschelman 15350bad9183SKris Buschelman Options Database Keys: 15360bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 15370bad9183SKris Buschelman 15380bad9183SKris Buschelman Level: beginner 15390bad9183SKris Buschelman 15400bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 15410bad9183SKris Buschelman M*/ 15420bad9183SKris Buschelman 1543a23d5eceSKris Buschelman EXTERN_C_BEGIN 1544a23d5eceSKris Buschelman #undef __FUNCT__ 15454a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1546dfbe8321SBarry Smith PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1547b5df2d14SHong Zhang { 1548b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1549dfbe8321SBarry Smith PetscErrorCode ierr; 1550b5df2d14SHong Zhang PetscTruth flg; 1551b5df2d14SHong Zhang 1552b5df2d14SHong Zhang PetscFunctionBegin; 1553b5df2d14SHong Zhang 1554b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1555b0a32e0cSBarry Smith B->data = (void*)b; 1556b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1557b5df2d14SHong Zhang 1558b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1559b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1560b5df2d14SHong Zhang B->mapping = 0; 1561b5df2d14SHong Zhang B->factor = 0; 1562b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1563b5df2d14SHong Zhang 1564b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1565b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1566b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1567b5df2d14SHong Zhang 1568b5df2d14SHong Zhang /* build local table of row and column ownerships */ 15691302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1570273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1571273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 15721302d50aSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1573b5df2d14SHong Zhang 1574b5df2d14SHong Zhang /* build cache for off array entries formed */ 1575b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1576b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1577b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1578b5df2d14SHong Zhang b->garray = PETSC_NULL; 1579b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1580b5df2d14SHong Zhang 1581f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1582b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 158364a35ccbSBarry Smith b->setvalueslen = 0; 1584b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1585b5df2d14SHong Zhang #endif 1586b5df2d14SHong Zhang 1587b5df2d14SHong Zhang /* stuff used in block assembly */ 1588b5df2d14SHong Zhang b->barray = 0; 1589b5df2d14SHong Zhang 1590b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1591b5df2d14SHong Zhang b->lvec = 0; 1592b5df2d14SHong Zhang b->Mvctx = 0; 159340781036SHong Zhang b->slvec0 = 0; 159440781036SHong Zhang b->slvec0b = 0; 159540781036SHong Zhang b->slvec1 = 0; 159640781036SHong Zhang b->slvec1a = 0; 159740781036SHong Zhang b->slvec1b = 0; 159840781036SHong Zhang b->sMvctx = 0; 1599b5df2d14SHong Zhang 1600b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1601b5df2d14SHong Zhang b->rowindices = 0; 1602b5df2d14SHong Zhang b->rowvalues = 0; 1603b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1604b5df2d14SHong Zhang 1605b5df2d14SHong Zhang /* hash table stuff */ 1606b5df2d14SHong Zhang b->ht = 0; 1607b5df2d14SHong Zhang b->hd = 0; 1608b5df2d14SHong Zhang b->ht_size = 0; 1609b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1610b5df2d14SHong Zhang b->ht_fact = 0; 1611b5df2d14SHong Zhang b->ht_total_ct = 0; 1612b5df2d14SHong Zhang b->ht_insert_ct = 0; 1613b5df2d14SHong Zhang 1614e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1615b5df2d14SHong Zhang if (flg) { 1616f6275e2eSBarry Smith PetscReal fact = 1.39; 1617b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1618e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1619b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1620b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1621b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1622b5df2d14SHong Zhang } 1623b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1624b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1625b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1626b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1627b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1628b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1629b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1630b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1631b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1632a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1633a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1634a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 163523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 163623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 163723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 163823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1639b5df2d14SHong Zhang PetscFunctionReturn(0); 1640b5df2d14SHong Zhang } 1641273d9f13SBarry Smith EXTERN_C_END 1642b5df2d14SHong Zhang 1643209238afSKris Buschelman /*MC 1644002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1645209238afSKris Buschelman 1646209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1647209238afSKris Buschelman and MATMPISBAIJ otherwise. 1648209238afSKris Buschelman 1649209238afSKris Buschelman Options Database Keys: 1650209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1651209238afSKris Buschelman 1652209238afSKris Buschelman Level: beginner 1653209238afSKris Buschelman 1654209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1655209238afSKris Buschelman M*/ 1656209238afSKris Buschelman 1657209238afSKris Buschelman EXTERN_C_BEGIN 1658209238afSKris Buschelman #undef __FUNCT__ 1659209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1660dfbe8321SBarry Smith PetscErrorCode MatCreate_SBAIJ(Mat A) 1661dfbe8321SBarry Smith { 16626849ba73SBarry Smith PetscErrorCode ierr; 16631302d50aSBarry Smith PetscMPIInt size; 1664209238afSKris Buschelman 1665209238afSKris Buschelman PetscFunctionBegin; 1666209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1667209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1668209238afSKris Buschelman if (size == 1) { 1669209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1670209238afSKris Buschelman } else { 1671209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1672209238afSKris Buschelman } 1673209238afSKris Buschelman PetscFunctionReturn(0); 1674209238afSKris Buschelman } 1675209238afSKris Buschelman EXTERN_C_END 1676209238afSKris Buschelman 16774a2ae208SSatish Balay #undef __FUNCT__ 16784a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1679b5df2d14SHong Zhang /*@C 1680b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1681b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1682b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1683b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1684b5df2d14SHong Zhang 1685b5df2d14SHong Zhang Collective on Mat 1686b5df2d14SHong Zhang 1687b5df2d14SHong Zhang Input Parameters: 1688b5df2d14SHong Zhang + A - the matrix 1689b5df2d14SHong Zhang . bs - size of blockk 1690b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1691b5df2d14SHong Zhang submatrix (same for all local rows) 1692b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 16936d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 16946d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 16956d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1696b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1697b5df2d14SHong Zhang submatrix (same for all local rows). 1698b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1699b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1700b5df2d14SHong Zhang each block row) or PETSC_NULL. 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang 1703b5df2d14SHong Zhang Options Database Keys: 1704b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1705b5df2d14SHong Zhang block calculations (much slower) 1706b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1707b5df2d14SHong Zhang 1708b5df2d14SHong Zhang Notes: 1709b5df2d14SHong Zhang 1710b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1711b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1712b5df2d14SHong Zhang 171349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 171449a6f317SBarry Smith 1715b5df2d14SHong Zhang Storage Information: 1716b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1717b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1718b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1719b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1720b5df2d14SHong Zhang 1721b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1722b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1723b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1724b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1725b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1726b5df2d14SHong Zhang 1727b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1728b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang .vb 1731b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1732b5df2d14SHong Zhang ------------------- 1733b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1734b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1735b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1736b5df2d14SHong Zhang ------------------- 1737b5df2d14SHong Zhang .ve 1738b5df2d14SHong Zhang 1739b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1740b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17416d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17426d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1743b5df2d14SHong Zhang 17446d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17456d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1746b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1747b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1748b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1749b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1750b5df2d14SHong Zhang matrices. 1751b5df2d14SHong Zhang 1752b5df2d14SHong Zhang Level: intermediate 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1755b5df2d14SHong Zhang 1756b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1757b5df2d14SHong Zhang @*/ 17581302d50aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1759b5df2d14SHong Zhang { 17601302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang PetscFunctionBegin; 1763a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1764a23d5eceSKris Buschelman if (f) { 1765a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1766b5df2d14SHong Zhang } 1767b5df2d14SHong Zhang PetscFunctionReturn(0); 1768b5df2d14SHong Zhang } 1769b5df2d14SHong Zhang 17704a2ae208SSatish Balay #undef __FUNCT__ 17714a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1772a30f8f8cSSatish Balay /*@C 1773a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1774a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1775a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1776a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1777a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1778a30f8f8cSSatish Balay 1779a30f8f8cSSatish Balay Collective on MPI_Comm 1780a30f8f8cSSatish Balay 1781a30f8f8cSSatish Balay Input Parameters: 1782a30f8f8cSSatish Balay + comm - MPI communicator 1783a30f8f8cSSatish Balay . bs - size of blockk 1784a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1785a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1786a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1787a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1788a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1789a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1790a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1791a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1792a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1793a30f8f8cSSatish Balay submatrix (same for all local rows) 1794a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 17956d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 17966d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 17976d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1798a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1799a30f8f8cSSatish Balay submatrix (same for all local rows). 1800a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1801a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1802a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1803a30f8f8cSSatish Balay 1804a30f8f8cSSatish Balay Output Parameter: 1805a30f8f8cSSatish Balay . A - the matrix 1806a30f8f8cSSatish Balay 1807a30f8f8cSSatish Balay Options Database Keys: 1808a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1809a30f8f8cSSatish Balay block calculations (much slower) 1810a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1811a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1812a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1813a30f8f8cSSatish Balay 1814a30f8f8cSSatish Balay Notes: 1815a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1816a30f8f8cSSatish Balay (possibly both). 1817a30f8f8cSSatish Balay 1818a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1819a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1820a30f8f8cSSatish Balay 182149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 182249a6f317SBarry Smith 1823a30f8f8cSSatish Balay Storage Information: 1824a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1825a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1826a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1827a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1828a30f8f8cSSatish Balay 1829a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1830a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1831a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1832a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1833a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1834a30f8f8cSSatish Balay 1835a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1836a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1837a30f8f8cSSatish Balay 1838a30f8f8cSSatish Balay .vb 1839a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1840a30f8f8cSSatish Balay ------------------- 1841a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1842a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1843a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1844a30f8f8cSSatish Balay ------------------- 1845a30f8f8cSSatish Balay .ve 1846a30f8f8cSSatish Balay 1847a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1848a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 18496d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18506d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1851a30f8f8cSSatish Balay 18526d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18536d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1854a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1855a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1856a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1857a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1858a30f8f8cSSatish Balay matrices. 1859a30f8f8cSSatish Balay 1860a30f8f8cSSatish Balay Level: intermediate 1861a30f8f8cSSatish Balay 1862a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1863a30f8f8cSSatish Balay 1864a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1865a30f8f8cSSatish Balay @*/ 1866a30f8f8cSSatish Balay 18671302d50aSBarry Smith PetscErrorCode MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1868a30f8f8cSSatish Balay { 18696849ba73SBarry Smith PetscErrorCode ierr; 18701302d50aSBarry Smith PetscMPIInt size; 1871a30f8f8cSSatish Balay 1872a30f8f8cSSatish Balay PetscFunctionBegin; 1873b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1874273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1875273d9f13SBarry Smith if (size > 1) { 1876b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1877b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1878273d9f13SBarry Smith } else { 1879273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1880273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1881273d9f13SBarry Smith } 1882a30f8f8cSSatish Balay PetscFunctionReturn(0); 1883a30f8f8cSSatish Balay } 1884a30f8f8cSSatish Balay 1885a30f8f8cSSatish Balay 18864a2ae208SSatish Balay #undef __FUNCT__ 18874a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 18886849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1889a30f8f8cSSatish Balay { 1890a30f8f8cSSatish Balay Mat mat; 1891a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1892dfbe8321SBarry Smith PetscErrorCode ierr; 1893521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 1894387bc808SHong Zhang PetscScalar *array; 1895a30f8f8cSSatish Balay 1896a30f8f8cSSatish Balay PetscFunctionBegin; 1897a30f8f8cSSatish Balay *newmat = 0; 1898b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1899be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 19001d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1901e1b6402fSHong Zhang 190282327fa8SHong Zhang mat->factor = matin->factor; 1903273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 190482327fa8SHong Zhang mat->assembled = PETSC_TRUE; 19057fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 19067fff6886SHong Zhang 1907b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1908521d7252SBarry Smith mat->bs = matin->bs; 1909a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1910a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1911a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1912a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1913a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1914a30f8f8cSSatish Balay 1915a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1916a30f8f8cSSatish Balay a->rend = oldmat->rend; 1917a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1918a30f8f8cSSatish Balay a->cend = oldmat->cend; 1919a30f8f8cSSatish Balay a->size = oldmat->size; 1920a30f8f8cSSatish Balay a->rank = oldmat->rank; 1921a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1922a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1923a30f8f8cSSatish Balay a->rowindices = 0; 1924a30f8f8cSSatish Balay a->rowvalues = 0; 1925a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1926a30f8f8cSSatish Balay a->barray = 0; 1927a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1928a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1929a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1930a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1931a30f8f8cSSatish Balay 1932a30f8f8cSSatish Balay /* hash table stuff */ 1933a30f8f8cSSatish Balay a->ht = 0; 1934a30f8f8cSSatish Balay a->hd = 0; 1935a30f8f8cSSatish Balay a->ht_size = 0; 1936a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1937a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1938a30f8f8cSSatish Balay a->ht_total_ct = 0; 1939a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1940a30f8f8cSSatish Balay 19411302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 1942a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1943521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 1944a30f8f8cSSatish Balay if (oldmat->colmap) { 1945a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1946a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1947a30f8f8cSSatish Balay #else 19481302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 19491302d50aSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt)); 19501302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 1951a30f8f8cSSatish Balay #endif 1952a30f8f8cSSatish Balay } else a->colmap = 0; 1953387bc808SHong Zhang 1954a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 19551302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 19561302d50aSBarry Smith PetscLogObjectMemory(mat,len*sizeof(PetscInt)); 19571302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 1958a30f8f8cSSatish Balay } else a->garray = 0; 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1961b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 1962a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1963b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 196482327fa8SHong Zhang 196582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 1966387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 196782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 1968387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 1969387bc808SHong Zhang 1970387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 19711ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 1972387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 1973387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 19741ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 19751ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 1976387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 19771ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 1978387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 1979387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 1980387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 1981387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 1982387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 1983387bc808SHong Zhang 1984387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 1985387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 1986387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 1987387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 198882327fa8SHong Zhang 1989a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1990b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 1991a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1992b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 1993b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1994a30f8f8cSSatish Balay *newmat = mat; 1995a30f8f8cSSatish Balay PetscFunctionReturn(0); 1996a30f8f8cSSatish Balay } 1997a30f8f8cSSatish Balay 1998a30f8f8cSSatish Balay #include "petscsys.h" 1999a30f8f8cSSatish Balay 20004a2ae208SSatish Balay #undef __FUNCT__ 20014a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2002dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2003a30f8f8cSSatish Balay { 2004a30f8f8cSSatish Balay Mat A; 20056849ba73SBarry Smith PetscErrorCode ierr; 200613f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 200787828ca2SBarry Smith PetscScalar *vals,*buf; 2008a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2009a30f8f8cSSatish Balay MPI_Status status; 201013f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners; 201113f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 201213f74950SBarry Smith PetscInt *locrowlens,*procsnz = 0,jj,*mycols,*ibuf; 20131302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 20141302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 20151302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 201613f74950SBarry Smith int fd; 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay PetscFunctionBegin; 2019b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2022a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2023a30f8f8cSSatish Balay if (!rank) { 2024b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2025a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2026552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2027a30f8f8cSSatish Balay if (header[3] < 0) { 202829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2029a30f8f8cSSatish Balay } 2030a30f8f8cSSatish Balay } 2031a30f8f8cSSatish Balay 2032a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2033a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2034a30f8f8cSSatish Balay 203529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2036a30f8f8cSSatish Balay 2037a30f8f8cSSatish Balay /* 2038a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2039a30f8f8cSSatish Balay divisible by the blocksize 2040a30f8f8cSSatish Balay */ 2041a30f8f8cSSatish Balay Mbs = M/bs; 2042a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2043a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2044a30f8f8cSSatish Balay else Mbs++; 2045a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2046b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2047a30f8f8cSSatish Balay } 2048a30f8f8cSSatish Balay 2049a30f8f8cSSatish Balay /* determine ownership of all rows */ 2050a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2051a30f8f8cSSatish Balay m = mbs*bs; 2052a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2053a30f8f8cSSatish Balay browners = rowners + size + 1; 2054a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2055a30f8f8cSSatish Balay rowners[0] = 0; 2056a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2057a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2058a30f8f8cSSatish Balay rstart = rowners[rank]; 2059a30f8f8cSSatish Balay rend = rowners[rank+1]; 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 20621302d50aSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 2063a30f8f8cSSatish Balay if (!rank) { 20641302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2065a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2066a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2067a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2068a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2069a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2070a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2071a30f8f8cSSatish Balay } else { 2072a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay } 2074a30f8f8cSSatish Balay 20750222edb1SHong Zhang if (!rank) { /* procs[0] */ 2076a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 20771302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 20781302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2079a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2080a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2081a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2082a30f8f8cSSatish Balay } 2083a30f8f8cSSatish Balay } 2084a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2085a30f8f8cSSatish Balay 2086a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2087a30f8f8cSSatish Balay maxnz = 0; 2088a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2089a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2090a30f8f8cSSatish Balay } 20911302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2092a30f8f8cSSatish Balay 2093a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2094a30f8f8cSSatish Balay nz = procsnz[0]; 20951302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2096a30f8f8cSSatish Balay mycols = ibuf; 2097a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2098a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2100a30f8f8cSSatish Balay 2101a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2102a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2103a30f8f8cSSatish Balay nz = procsnz[i]; 2104a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2105a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay } 2107a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2108a30f8f8cSSatish Balay if (size != 1) { 2109a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2110a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2112a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2113a30f8f8cSSatish Balay } 2114a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21150222edb1SHong Zhang } else { /* procs[i], i>0 */ 2116a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2117a30f8f8cSSatish Balay nz = 0; 2118a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2119a30f8f8cSSatish Balay nz += locrowlens[i]; 2120a30f8f8cSSatish Balay } 21211302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay mycols = ibuf; 2123a30f8f8cSSatish Balay /* receive message of column indices*/ 2124a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2125a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 212629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay 2129a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 21301302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 21321302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 21331302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2134a30f8f8cSSatish Balay masked1 = mask + Mbs; 2135a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2136a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2137a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2138a30f8f8cSSatish Balay dcount = 0; 2139a30f8f8cSSatish Balay odcount = 0; 2140a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2141a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2142a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21430222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2144a30f8f8cSSatish Balay if (!mask[tmp]) { 2145a30f8f8cSSatish Balay mask[tmp] = 1; 21460222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21470222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2148a30f8f8cSSatish Balay } 2149a30f8f8cSSatish Balay } 2150a30f8f8cSSatish Balay rowcount++; 2151a30f8f8cSSatish Balay } 2152a30f8f8cSSatish Balay 21530222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21540222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2155a30f8f8cSSatish Balay 2156a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2157a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2158a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2159a30f8f8cSSatish Balay } 2160a30f8f8cSSatish Balay 2161a30f8f8cSSatish Balay /* create our matrix */ 216222191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 216322191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 216422191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2165273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay 2167a30f8f8cSSatish Balay if (!rank) { 216887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2169a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2170a30f8f8cSSatish Balay nz = procsnz[0]; 2171a30f8f8cSSatish Balay vals = buf; 2172a30f8f8cSSatish Balay mycols = ibuf; 2173a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2174a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2176a30f8f8cSSatish Balay 2177a30f8f8cSSatish Balay /* insert into matrix */ 2178a30f8f8cSSatish Balay jj = rstart*bs; 2179a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21807e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2181a30f8f8cSSatish Balay mycols += locrowlens[i]; 2182a30f8f8cSSatish Balay vals += locrowlens[i]; 2183a30f8f8cSSatish Balay jj++; 2184a30f8f8cSSatish Balay } 21857e06b45fSHong Zhang 2186a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2187a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2188a30f8f8cSSatish Balay nz = procsnz[i]; 2189a30f8f8cSSatish Balay vals = buf; 2190a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2191a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay } 2193a30f8f8cSSatish Balay /* the last proc */ 2194a30f8f8cSSatish Balay if (size != 1){ 2195a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2196a30f8f8cSSatish Balay vals = buf; 2197a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2199a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay } 2201a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22027e06b45fSHong Zhang 2203a30f8f8cSSatish Balay } else { 2204a30f8f8cSSatish Balay /* receive numeric values */ 220587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2206a30f8f8cSSatish Balay 2207a30f8f8cSSatish Balay /* receive message of values*/ 2208a30f8f8cSSatish Balay vals = buf; 2209a30f8f8cSSatish Balay mycols = ibuf; 2210a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 221229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2213a30f8f8cSSatish Balay 2214a30f8f8cSSatish Balay /* insert into matrix */ 2215a30f8f8cSSatish Balay jj = rstart*bs; 2216a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2217a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay mycols += locrowlens[i]; 2219a30f8f8cSSatish Balay vals += locrowlens[i]; 2220a30f8f8cSSatish Balay jj++; 2221a30f8f8cSSatish Balay } 2222a30f8f8cSSatish Balay } 22237e06b45fSHong Zhang 2224a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 223222191285SKris Buschelman *newmat = A; 2233a30f8f8cSSatish Balay PetscFunctionReturn(0); 2234a30f8f8cSSatish Balay } 2235a30f8f8cSSatish Balay 22364a2ae208SSatish Balay #undef __FUNCT__ 22374a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2238dcf5cc72SBarry Smith /*XXXXX@ 2239a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2240a30f8f8cSSatish Balay 2241a30f8f8cSSatish Balay Input Parameters: 2242a30f8f8cSSatish Balay . mat - the matrix 2243a30f8f8cSSatish Balay . fact - factor 2244a30f8f8cSSatish Balay 2245a30f8f8cSSatish Balay Collective on Mat 2246a30f8f8cSSatish Balay 2247a30f8f8cSSatish Balay Level: advanced 2248a30f8f8cSSatish Balay 2249a30f8f8cSSatish Balay Notes: 2250a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2251a30f8f8cSSatish Balay 2252a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2253a30f8f8cSSatish Balay 2254a30f8f8cSSatish Balay .seealso: MatSetOption() 2255dcf5cc72SBarry Smith @XXXXX*/ 2256dcf5cc72SBarry Smith 225724d5174aSHong Zhang 22584a2ae208SSatish Balay #undef __FUNCT__ 22594a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2260dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 226124d5174aSHong Zhang { 226224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2263f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2264ca54ac64SHong Zhang PetscReal atmp; 226587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2266dfbe8321SBarry Smith PetscErrorCode ierr; 22671302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 22681302d50aSBarry Smith PetscMPIInt rank,size; 22691302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 227087828ca2SBarry Smith PetscScalar *va; 22718a1c53f2SBarry Smith MatScalar *ba; 2272f4c0e9e4SHong Zhang MPI_Status stat; 227324d5174aSHong Zhang 227424d5174aSHong Zhang PetscFunctionBegin; 2275d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 22761ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2277f4c0e9e4SHong Zhang 227856faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 227956faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2280f4c0e9e4SHong Zhang 2281521d7252SBarry Smith bs = A->bs; 2282f4c0e9e4SHong Zhang mbs = a->mbs; 2283f4c0e9e4SHong Zhang Mbs = a->Mbs; 2284f4c0e9e4SHong Zhang ba = b->a; 2285f4c0e9e4SHong Zhang bi = b->i; 2286f4c0e9e4SHong Zhang bj = b->j; 2287f4c0e9e4SHong Zhang 2288f4c0e9e4SHong Zhang /* find ownerships */ 2289f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2290f4c0e9e4SHong Zhang 2291f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 229282502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2293ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2294f4c0e9e4SHong Zhang 2295f4c0e9e4SHong Zhang /* row_max for B */ 2296b8475685SHong Zhang if (rank != size-1){ 2297f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2298f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2299f4c0e9e4SHong Zhang brow = bs*i; 2300f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2301f4c0e9e4SHong Zhang bcol = bs*(*bj); 2302f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2303ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 230404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2305f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2306f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2307ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2308ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2309f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2310f4c0e9e4SHong Zhang } 2311f4c0e9e4SHong Zhang } 2312f4c0e9e4SHong Zhang bj++; 2313f4c0e9e4SHong Zhang } 2314f4c0e9e4SHong Zhang } 2315f4c0e9e4SHong Zhang 2316f4c0e9e4SHong Zhang /* send values to its owners */ 2317f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2318f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2319ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 232056faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2321ca54ac64SHong Zhang } 2322f4c0e9e4SHong Zhang } 2323f4c0e9e4SHong Zhang 2324f4c0e9e4SHong Zhang /* receive values */ 2325ca54ac64SHong Zhang if (rank){ 2326f4c0e9e4SHong Zhang rvalues = work; 2327ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2328f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 232956faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2330f4c0e9e4SHong Zhang /* process values */ 2331f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2332ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2333f4c0e9e4SHong Zhang } 2334f4c0e9e4SHong Zhang } 2335ca54ac64SHong Zhang } 2336f4c0e9e4SHong Zhang 23371ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2338ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 233924d5174aSHong Zhang PetscFunctionReturn(0); 234024d5174aSHong Zhang } 23412798e883SHong Zhang 23422798e883SHong Zhang #undef __FUNCT__ 23432798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 23441302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 23452798e883SHong Zhang { 23462798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2347dfbe8321SBarry Smith PetscErrorCode ierr; 2348521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2349ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2350ffe4fb16SHong Zhang Vec bb1; 2351ffe4fb16SHong Zhang 2352ffe4fb16SHong Zhang PetscFunctionBegin; 235377431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2354ffe4fb16SHong Zhang if (bs > 1) 2355ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2356ffe4fb16SHong Zhang 2357ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2358ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2359ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2360ffe4fb16SHong Zhang its--; 2361ffe4fb16SHong Zhang } 2362ffe4fb16SHong Zhang 2363ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2364ffe4fb16SHong Zhang while (its--){ 2365ffe4fb16SHong Zhang 2366ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2367ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2368ffe4fb16SHong Zhang 2369ffe4fb16SHong Zhang /* copy xx into slvec0a */ 23701ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 23711ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2372ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23731ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2374ffe4fb16SHong Zhang 2375ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2376ffe4fb16SHong Zhang 2377ffe4fb16SHong Zhang /* copy bb into slvec1a */ 23781ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 23791ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2380ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23811ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2382ffe4fb16SHong Zhang 2383ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2384ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2385ffe4fb16SHong Zhang 2386ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 23871ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 23881ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2389ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2390ffe4fb16SHong Zhang 2391ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2392ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2393ffe4fb16SHong Zhang 2394ffe4fb16SHong Zhang /* local diagonal sweep */ 2395ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2396ffe4fb16SHong Zhang } 2397ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2398ffe4fb16SHong Zhang } else { 2399ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2400ffe4fb16SHong Zhang } 2401ffe4fb16SHong Zhang PetscFunctionReturn(0); 2402ffe4fb16SHong Zhang } 2403ffe4fb16SHong Zhang 2404ffe4fb16SHong Zhang #undef __FUNCT__ 2405ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 24061302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2407ffe4fb16SHong Zhang { 2408ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2409dfbe8321SBarry Smith PetscErrorCode ierr; 2410d05c616dSSatish Balay PetscScalar mone=-1.0; 24112798e883SHong Zhang Vec lvec1,bb1; 24122798e883SHong Zhang 24132798e883SHong Zhang PetscFunctionBegin; 241477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2415521d7252SBarry Smith if (matin->bs > 1) 24162798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24172798e883SHong Zhang 2418c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24192798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2420bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24212798e883SHong Zhang its--; 24222798e883SHong Zhang } 24232798e883SHong Zhang 24242798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24252798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24262798e883SHong Zhang while (its--){ 24272798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24282798e883SHong Zhang 24292798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24302798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 24312798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 24322798e883SHong Zhang 24332798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24342798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 24352798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24362798e883SHong Zhang 24372798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 24382798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 24392798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24402798e883SHong Zhang 24412798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24422798e883SHong Zhang 2443c14dc6b6SHong Zhang /* diagonal sweep */ 2444bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 24452798e883SHong Zhang } 24462798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 24472798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2448c14dc6b6SHong Zhang } else { 2449c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2450c14dc6b6SHong Zhang } 24512798e883SHong Zhang PetscFunctionReturn(0); 24522798e883SHong Zhang } 24532798e883SHong Zhang 2454