173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 235222a1afSHong Zhang extern int MatUseSpooles_MPISBAIJ(Mat); 24a30f8f8cSSatish Balay 25a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2687828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 27a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 28a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 29a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 30a30f8f8cSSatish Balay into the single precision data structures. 31a30f8f8cSSatish Balay */ 32a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 33a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 36a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 37a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 38a30f8f8cSSatish Balay #else 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 42a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 43a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 44a30f8f8cSSatish Balay #endif 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay EXTERN_C_BEGIN 474a2ae208SSatish Balay #undef __FUNCT__ 484a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 49a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 50a30f8f8cSSatish Balay { 51f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 52a30f8f8cSSatish Balay int ierr; 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay PetscFunctionBegin; 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 56a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 57a30f8f8cSSatish Balay PetscFunctionReturn(0); 58a30f8f8cSSatish Balay } 59a30f8f8cSSatish Balay EXTERN_C_END 60a30f8f8cSSatish Balay 61a30f8f8cSSatish Balay EXTERN_C_BEGIN 624a2ae208SSatish Balay #undef __FUNCT__ 634a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 64a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 65a30f8f8cSSatish Balay { 66f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 67a30f8f8cSSatish Balay int ierr; 68a30f8f8cSSatish Balay 69a30f8f8cSSatish Balay PetscFunctionBegin; 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 71a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 72a30f8f8cSSatish Balay PetscFunctionReturn(0); 73a30f8f8cSSatish Balay } 74a30f8f8cSSatish Balay EXTERN_C_END 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay /* 77a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 78a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 79a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 80a30f8f8cSSatish Balay length of colmap equals the global matrix length. 81a30f8f8cSSatish Balay */ 824a2ae208SSatish Balay #undef __FUNCT__ 834a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 84a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 85a30f8f8cSSatish Balay { 86a30f8f8cSSatish Balay PetscFunctionBegin; 8729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 89a30f8f8cSSatish Balay } 90a30f8f8cSSatish Balay 91a30f8f8cSSatish Balay #define CHUNKSIZE 10 92a30f8f8cSSatish Balay 93a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 94a30f8f8cSSatish Balay { \ 95a30f8f8cSSatish Balay \ 96a30f8f8cSSatish Balay brow = row/bs; \ 97a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 98a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 99a30f8f8cSSatish Balay bcol = col/bs; \ 100a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 101a30f8f8cSSatish Balay low = 0; high = nrow; \ 102a30f8f8cSSatish Balay while (high-low > 3) { \ 103a30f8f8cSSatish Balay t = (low+high)/2; \ 104a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 105a30f8f8cSSatish Balay else low = t; \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 108a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 109a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 110a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 111a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 112a30f8f8cSSatish Balay else *bap = value; \ 113a30f8f8cSSatish Balay goto a_noinsert; \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11729bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 118a30f8f8cSSatish Balay if (nrow >= rmax) { \ 119a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 120a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 121a30f8f8cSSatish Balay MatScalar *new_a; \ 122a30f8f8cSSatish Balay \ 12329bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 124a30f8f8cSSatish Balay \ 125a30f8f8cSSatish Balay /* malloc new storage space */ \ 126a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12782502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 128a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 129a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 130a30f8f8cSSatish Balay \ 131a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 132a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 133a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 135a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 137a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13887828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 139a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 140a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 141a30f8f8cSSatish Balay /* free up old matrix storage */ \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 143a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 144a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 145a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 146a30f8f8cSSatish Balay } \ 147a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 148a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 149a30f8f8cSSatish Balay \ 150a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 151a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 152b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 153a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 154a30f8f8cSSatish Balay a->reallocs++; \ 155a30f8f8cSSatish Balay a->s_nz++; \ 156a30f8f8cSSatish Balay } \ 157a30f8f8cSSatish Balay N = nrow++ - 1; \ 158a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 159a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 160a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 161a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 162a30f8f8cSSatish Balay } \ 163a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 164a30f8f8cSSatish Balay rp[_i] = bcol; \ 165a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 166a30f8f8cSSatish Balay a_noinsert:; \ 167a30f8f8cSSatish Balay ailen[brow] = nrow; \ 168a30f8f8cSSatish Balay } 169a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 170a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 171a30f8f8cSSatish Balay { \ 172a30f8f8cSSatish Balay brow = row/bs; \ 173a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 174a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 175a30f8f8cSSatish Balay bcol = col/bs; \ 176a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 177a30f8f8cSSatish Balay low = 0; high = nrow; \ 178a30f8f8cSSatish Balay while (high-low > 3) { \ 179a30f8f8cSSatish Balay t = (low+high)/2; \ 180a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 181a30f8f8cSSatish Balay else low = t; \ 182a30f8f8cSSatish Balay } \ 183a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 184a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 185a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 186a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 187a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 188a30f8f8cSSatish Balay else *bap = value; \ 189a30f8f8cSSatish Balay goto b_noinsert; \ 190a30f8f8cSSatish Balay } \ 191a30f8f8cSSatish Balay } \ 192a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19329bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 194a30f8f8cSSatish Balay if (nrow >= rmax) { \ 195a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 196a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 197a30f8f8cSSatish Balay MatScalar *new_a; \ 198a30f8f8cSSatish Balay \ 19929bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 200a30f8f8cSSatish Balay \ 201a30f8f8cSSatish Balay /* malloc new storage space */ \ 202a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20382502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 204a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 205a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 206a30f8f8cSSatish Balay \ 207a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 208a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 209a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 215a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 216a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 217a30f8f8cSSatish Balay /* free up old matrix storage */ \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 220a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 221a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 222a30f8f8cSSatish Balay } \ 223a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 224a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 225a30f8f8cSSatish Balay \ 226a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 227a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 228b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 229a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 230a30f8f8cSSatish Balay b->reallocs++; \ 231a30f8f8cSSatish Balay b->nz++; \ 232a30f8f8cSSatish Balay } \ 233a30f8f8cSSatish Balay N = nrow++ - 1; \ 234a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 235a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 236a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 237a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 238a30f8f8cSSatish Balay } \ 239a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 240a30f8f8cSSatish Balay rp[_i] = bcol; \ 241a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 242a30f8f8cSSatish Balay b_noinsert:; \ 243a30f8f8cSSatish Balay bilen[brow] = nrow; \ 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay #endif 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2484a2ae208SSatish Balay #undef __FUNCT__ 2494a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 25087828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 251a30f8f8cSSatish Balay { 252a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 253a30f8f8cSSatish Balay int ierr,i,N = m*n; 254a30f8f8cSSatish Balay MatScalar *vsingle; 255a30f8f8cSSatish Balay 256a30f8f8cSSatish Balay PetscFunctionBegin; 257a30f8f8cSSatish Balay if (N > b->setvalueslen) { 258a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 260a30f8f8cSSatish Balay b->setvalueslen = N; 261a30f8f8cSSatish Balay } 262a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 263a30f8f8cSSatish Balay 264a30f8f8cSSatish Balay for (i=0; i<N; i++) { 265a30f8f8cSSatish Balay vsingle[i] = v[i]; 266a30f8f8cSSatish Balay } 267a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 268a30f8f8cSSatish Balay PetscFunctionReturn(0); 269a30f8f8cSSatish Balay } 270a30f8f8cSSatish Balay 2714a2ae208SSatish Balay #undef __FUNCT__ 2724a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 27387828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 274a30f8f8cSSatish Balay { 275a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 276a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 277a30f8f8cSSatish Balay MatScalar *vsingle; 278a30f8f8cSSatish Balay 279a30f8f8cSSatish Balay PetscFunctionBegin; 280a30f8f8cSSatish Balay if (N > b->setvalueslen) { 281a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 28282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 283a30f8f8cSSatish Balay b->setvalueslen = N; 284a30f8f8cSSatish Balay } 285a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 286a30f8f8cSSatish Balay for (i=0; i<N; i++) { 287a30f8f8cSSatish Balay vsingle[i] = v[i]; 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 290a30f8f8cSSatish Balay PetscFunctionReturn(0); 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay 2934a2ae208SSatish Balay #undef __FUNCT__ 2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 29587828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 296a30f8f8cSSatish Balay { 297a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 298a30f8f8cSSatish Balay int ierr,i,N = m*n; 299a30f8f8cSSatish Balay MatScalar *vsingle; 300a30f8f8cSSatish Balay 301a30f8f8cSSatish Balay PetscFunctionBegin; 30229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3034d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 304a30f8f8cSSatish Balay } 305a30f8f8cSSatish Balay 3064a2ae208SSatish Balay #undef __FUNCT__ 3074a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 30887828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 309a30f8f8cSSatish Balay { 310a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 311a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 312a30f8f8cSSatish Balay MatScalar *vsingle; 313a30f8f8cSSatish Balay 314a30f8f8cSSatish Balay PetscFunctionBegin; 31529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3164d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay #endif 319a30f8f8cSSatish Balay 320a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 321a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 322a30f8f8cSSatish Balay */ 3234a2ae208SSatish Balay #undef __FUNCT__ 3244a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 325a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 326a30f8f8cSSatish Balay { 327a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 328a30f8f8cSSatish Balay MatScalar value; 329b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 330a30f8f8cSSatish Balay int ierr,i,j,row,col; 331b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 332a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 333a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 334a30f8f8cSSatish Balay 335a30f8f8cSSatish Balay /* Some Variables required in the macro */ 336a30f8f8cSSatish Balay Mat A = baij->A; 337a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 338a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 339a30f8f8cSSatish Balay MatScalar *aa=a->a; 340a30f8f8cSSatish Balay 341a30f8f8cSSatish Balay Mat B = baij->B; 342a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 343a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 344a30f8f8cSSatish Balay MatScalar *ba=b->a; 345a30f8f8cSSatish Balay 346a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 347a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 348a30f8f8cSSatish Balay MatScalar *ap,*bap; 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay /* for stash */ 351f65c83cfSHong Zhang int n_loc, *in_loc=0; 352f65c83cfSHong Zhang MatScalar *v_loc=0; 353a30f8f8cSSatish Balay 354a30f8f8cSSatish Balay PetscFunctionBegin; 355a30f8f8cSSatish Balay 356a30f8f8cSSatish Balay if(!baij->donotstash){ 35782502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35882502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 359a30f8f8cSSatish Balay } 360a30f8f8cSSatish Balay 361a30f8f8cSSatish Balay for (i=0; i<m; i++) { 362a30f8f8cSSatish Balay if (im[i] < 0) continue; 363a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 364b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 365a30f8f8cSSatish Balay #endif 366a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 367a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 368a30f8f8cSSatish Balay for (j=0; j<n; j++) { 369f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 370a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 371a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 372a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 373a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 374a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 375a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 376a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 377a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 378a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 379b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 380a30f8f8cSSatish Balay #endif 381a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 382a30f8f8cSSatish Balay if (mat->was_assembled) { 383a30f8f8cSSatish Balay if (!baij->colmap) { 384a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 385a30f8f8cSSatish Balay } 386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 387a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38871730473SSatish Balay col = col - 1; 389a30f8f8cSSatish Balay #else 39071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 391a30f8f8cSSatish Balay #endif 392a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 393a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 394a30f8f8cSSatish Balay col = in[j]; 395a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 396a30f8f8cSSatish Balay B = baij->B; 397a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 398a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 399a30f8f8cSSatish Balay ba=b->a; 40071730473SSatish Balay } else col += in[j]%bs; 401a30f8f8cSSatish Balay } else col = in[j]; 402a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 403a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 404a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 405a30f8f8cSSatish Balay } 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay } else { /* off processor entry */ 408a30f8f8cSSatish Balay if (!baij->donotstash) { 409a30f8f8cSSatish Balay n_loc = 0; 410a30f8f8cSSatish Balay for (j=0; j<n; j++){ 411f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 412a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 413a30f8f8cSSatish Balay if (roworiented) { 414a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 415a30f8f8cSSatish Balay } else { 416a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay n_loc++; 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay } 423a30f8f8cSSatish Balay } 424a30f8f8cSSatish Balay 425a30f8f8cSSatish Balay if(!baij->donotstash){ 426a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 427a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 428a30f8f8cSSatish Balay } 429a30f8f8cSSatish Balay PetscFunctionReturn(0); 430a30f8f8cSSatish Balay } 431a30f8f8cSSatish Balay 4324a2ae208SSatish Balay #undef __FUNCT__ 4334a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 434a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 435a30f8f8cSSatish Balay { 436a30f8f8cSSatish Balay PetscFunctionBegin; 43729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 439a30f8f8cSSatish Balay } 440a30f8f8cSSatish Balay 441a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 442a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 443a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 444a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4454a2ae208SSatish Balay #undef __FUNCT__ 4464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 447a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 448a30f8f8cSSatish Balay { 449a30f8f8cSSatish Balay PetscFunctionBegin; 45029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 452a30f8f8cSSatish Balay } 453a30f8f8cSSatish Balay 4544a2ae208SSatish Balay #undef __FUNCT__ 4554a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 456a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 457a30f8f8cSSatish Balay { 458a30f8f8cSSatish Balay PetscFunctionBegin; 45929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 46096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 461a30f8f8cSSatish Balay } 462a30f8f8cSSatish Balay 4634a2ae208SSatish Balay #undef __FUNCT__ 4644a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 46587828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 466a30f8f8cSSatish Balay { 467f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 468a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 469a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 470a30f8f8cSSatish Balay 471a30f8f8cSSatish Balay PetscFunctionBegin; 472a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47329bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 474b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 475a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 476a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 477a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47829bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 479b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 480a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 481a30f8f8cSSatish Balay col = idxn[j] - bscstart; 482c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 483a30f8f8cSSatish Balay } else { 484a30f8f8cSSatish Balay if (!baij->colmap) { 485a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 486a30f8f8cSSatish Balay } 487a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 488a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 489a30f8f8cSSatish Balay data --; 490a30f8f8cSSatish Balay #else 491a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 492a30f8f8cSSatish Balay #endif 493a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 494a30f8f8cSSatish Balay else { 495a30f8f8cSSatish Balay col = data + idxn[j]%bs; 496c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay } else { 50129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay } 504a30f8f8cSSatish Balay PetscFunctionReturn(0); 505a30f8f8cSSatish Balay } 506a30f8f8cSSatish Balay 5074a2ae208SSatish Balay #undef __FUNCT__ 5084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 509a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 510a30f8f8cSSatish Balay { 511a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 512bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 513bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 514a30f8f8cSSatish Balay int ierr; 515a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 516a30f8f8cSSatish Balay 517a30f8f8cSSatish Balay PetscFunctionBegin; 518a30f8f8cSSatish Balay if (baij->size == 1) { 519a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 520a30f8f8cSSatish Balay } else { 521a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 522f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 523a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 524a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 525a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 526a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 527a30f8f8cSSatish Balay /* 528a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 529a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 530a30f8f8cSSatish Balay */ 531d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 532a30f8f8cSSatish Balay /* 533a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 534a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 535a30f8f8cSSatish Balay 536a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 537a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 538a30f8f8cSSatish Balay } else { 53929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay PetscFunctionReturn(0); 543a30f8f8cSSatish Balay } 544a30f8f8cSSatish Balay 545a30f8f8cSSatish Balay /* 546a30f8f8cSSatish Balay Creates the hash table, and sets the table 547a30f8f8cSSatish Balay This table is created only once. 548a30f8f8cSSatish Balay If new entried need to be added to the matrix 549a30f8f8cSSatish Balay then the hash table has to be destroyed and 550a30f8f8cSSatish Balay recreated. 551a30f8f8cSSatish Balay */ 5524a2ae208SSatish Balay #undef __FUNCT__ 5534a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 554a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 555a30f8f8cSSatish Balay { 556a30f8f8cSSatish Balay PetscFunctionBegin; 55729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 559a30f8f8cSSatish Balay } 560a30f8f8cSSatish Balay 5614a2ae208SSatish Balay #undef __FUNCT__ 5624a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 563a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 564a30f8f8cSSatish Balay { 565a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 566a30f8f8cSSatish Balay int ierr,nstash,reallocs; 567a30f8f8cSSatish Balay InsertMode addv; 568a30f8f8cSSatish Balay 569a30f8f8cSSatish Balay PetscFunctionBegin; 570a30f8f8cSSatish Balay if (baij->donotstash) { 571a30f8f8cSSatish Balay PetscFunctionReturn(0); 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 574a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 575a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 576a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 578a30f8f8cSSatish Balay } 579a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 580a30f8f8cSSatish Balay 581a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 582a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 583a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 584b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 585a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 586b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 587a30f8f8cSSatish Balay PetscFunctionReturn(0); 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay 5904a2ae208SSatish Balay #undef __FUNCT__ 5914a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 592a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 593a30f8f8cSSatish Balay { 594a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 595a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 596a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 597a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 598a30f8f8cSSatish Balay int *row,*col,other_disassembled; 599a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 600a30f8f8cSSatish Balay MatScalar *val; 601a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 6025222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 6035222a1afSHong Zhang PetscTruth flag; 6045222a1afSHong Zhang #endif 605a30f8f8cSSatish Balay 606a30f8f8cSSatish Balay PetscFunctionBegin; 607a30f8f8cSSatish Balay 608a30f8f8cSSatish Balay if (!baij->donotstash) { 609a30f8f8cSSatish Balay while (1) { 610a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 611a30f8f8cSSatish Balay /* 612a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 613a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 614a30f8f8cSSatish Balay */ 615a30f8f8cSSatish Balay if (!flg) break; 616a30f8f8cSSatish Balay 617a30f8f8cSSatish Balay for (i=0; i<n;) { 618a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 619a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 620a30f8f8cSSatish Balay if (j < n) ncols = j-i; 621a30f8f8cSSatish Balay else ncols = n-i; 622a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 623a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 624a30f8f8cSSatish Balay i = j; 625a30f8f8cSSatish Balay } 626a30f8f8cSSatish Balay } 627a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 628a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 629a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 630a30f8f8cSSatish Balay restore the original flags */ 631a30f8f8cSSatish Balay r1 = baij->roworiented; 632a30f8f8cSSatish Balay r2 = a->roworiented; 633a30f8f8cSSatish Balay r3 = b->roworiented; 634a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 635a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 636a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 637a30f8f8cSSatish Balay while (1) { 638a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 639a30f8f8cSSatish Balay if (!flg) break; 640a30f8f8cSSatish Balay 641a30f8f8cSSatish Balay for (i=0; i<n;) { 642a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 643a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 644a30f8f8cSSatish Balay if (j < n) ncols = j-i; 645a30f8f8cSSatish Balay else ncols = n-i; 646a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 647a30f8f8cSSatish Balay i = j; 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 651a30f8f8cSSatish Balay baij->roworiented = r1; 652a30f8f8cSSatish Balay a->roworiented = r2; 653a30f8f8cSSatish Balay b->roworiented = r3; 654a30f8f8cSSatish Balay } 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 657a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 660a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 661a30f8f8cSSatish Balay /* 662a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 663a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 664a30f8f8cSSatish Balay */ 665a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 666a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 667a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 668c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 669a30f8f8cSSatish Balay } 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 67340781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 674a30f8f8cSSatish Balay } 675a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 676a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 679a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 680f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 681a30f8f8cSSatish Balay baij->ht_total_ct = 0; 682a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 683a30f8f8cSSatish Balay } 684a30f8f8cSSatish Balay #endif 685a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 686c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 687a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 688a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay 691a30f8f8cSSatish Balay if (baij->rowvalues) { 692a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 693a30f8f8cSSatish Balay baij->rowvalues = 0; 694a30f8f8cSSatish Balay } 6955222a1afSHong Zhang 6965222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 6975222a1afSHong Zhang ierr = PetscOptionsHasName(PETSC_NULL,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr); 6985222a1afSHong Zhang if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); } 6995222a1afSHong Zhang #endif 700a30f8f8cSSatish Balay PetscFunctionReturn(0); 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay 7034a2ae208SSatish Balay #undef __FUNCT__ 7044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 705b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 706a30f8f8cSSatish Balay { 707a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 708fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 709a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 710b0a32e0cSBarry Smith PetscViewer sviewer; 711f3ef73ceSBarry Smith PetscViewerFormat format; 712a30f8f8cSSatish Balay 713a30f8f8cSSatish Balay PetscFunctionBegin; 714b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 715fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 716a30f8f8cSSatish Balay if (isascii) { 717b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 718fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 719a30f8f8cSSatish Balay MatInfo info; 720a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 721a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 722b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 723b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 724a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 725a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 726b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 727a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 728b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 729b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 730a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 731a30f8f8cSSatish Balay PetscFunctionReturn(0); 732fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 733b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 734a30f8f8cSSatish Balay PetscFunctionReturn(0); 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay 738a30f8f8cSSatish Balay if (isdraw) { 739b0a32e0cSBarry Smith PetscDraw draw; 740a30f8f8cSSatish Balay PetscTruth isnull; 741b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 742b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay if (size == 1) { 746e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 747a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 748a30f8f8cSSatish Balay } else { 749a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 750a30f8f8cSSatish Balay Mat A; 75165d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 75265d70643SHong Zhang Mat_SeqBAIJ *Bloc; 753b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 754a30f8f8cSSatish Balay MatScalar *a; 755a30f8f8cSSatish Balay 756a30f8f8cSSatish Balay if (!rank) { 757bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 758a30f8f8cSSatish Balay } else { 759f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 760a30f8f8cSSatish Balay } 761b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 762a30f8f8cSSatish Balay 763a30f8f8cSSatish Balay /* copy over the A part */ 76465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 765a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 76682502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 767a30f8f8cSSatish Balay 768a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 769a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 770a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 771a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 772a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 773a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 774a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 775a30f8f8cSSatish Balay col++; a += bs; 776a30f8f8cSSatish Balay } 777a30f8f8cSSatish Balay } 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay /* copy over the B part */ 78065d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 78165d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 782a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 783a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 784a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 785a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 786a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 787a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 788a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 789a30f8f8cSSatish Balay col++; a += bs; 790a30f8f8cSSatish Balay } 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 794a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 795a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 796a30f8f8cSSatish Balay /* 797a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 798b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 799a30f8f8cSSatish Balay */ 800b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 80165d70643SHong Zhang if (!rank) { 802e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 803a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 804a30f8f8cSSatish Balay } 805b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 806a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 807a30f8f8cSSatish Balay } 808a30f8f8cSSatish Balay PetscFunctionReturn(0); 809a30f8f8cSSatish Balay } 810a30f8f8cSSatish Balay 8114a2ae208SSatish Balay #undef __FUNCT__ 8124a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 813b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 814a30f8f8cSSatish Balay { 815a30f8f8cSSatish Balay int ierr; 816a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 817a30f8f8cSSatish Balay 818a30f8f8cSSatish Balay PetscFunctionBegin; 819b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 820fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 821b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 822fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 823a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 824a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 825a30f8f8cSSatish Balay } else { 82629bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 827a30f8f8cSSatish Balay } 828a30f8f8cSSatish Balay PetscFunctionReturn(0); 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay 8314a2ae208SSatish Balay #undef __FUNCT__ 8324a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 833a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 834a30f8f8cSSatish Balay { 835a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 836a30f8f8cSSatish Balay int ierr; 837a30f8f8cSSatish Balay 838a30f8f8cSSatish Balay PetscFunctionBegin; 839a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 840b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 841a30f8f8cSSatish Balay #endif 842a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 843a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 844a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 845a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 846a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 847a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 848a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 849a30f8f8cSSatish Balay #else 850a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 851a30f8f8cSSatish Balay #endif 852a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 853a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 854a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 85540781036SHong Zhang if (baij->slvec0) { 85640781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 85740781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 85840781036SHong Zhang } 85940781036SHong Zhang if (baij->slvec1) { 86040781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 86140781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 86240781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 86340781036SHong Zhang } 86440781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 865a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 866a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 867a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 868a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 869a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 870a30f8f8cSSatish Balay #endif 871a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 872a30f8f8cSSatish Balay PetscFunctionReturn(0); 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay 8754a2ae208SSatish Balay #undef __FUNCT__ 876a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 877a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 878a9d4b620SHong Zhang { 879a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 8804024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 881a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 882a9d4b620SHong Zhang 883a9d4b620SHong Zhang PetscFunctionBegin; 884a9d4b620SHong Zhang /* 885a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," _1comm is called ...\n"); 886a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 887a9d4b620SHong Zhang */ 888a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 889a9d4b620SHong Zhang if (nt != A->n) { 890a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 891a9d4b620SHong Zhang } 892a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 893a9d4b620SHong Zhang if (nt != A->m) { 894a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 895a9d4b620SHong Zhang } 896a9d4b620SHong Zhang 897a9d4b620SHong Zhang /* diagonal part */ 898a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 899a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 900a9d4b620SHong Zhang 901a9d4b620SHong Zhang /* subdiagonal part */ 902a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 903a9d4b620SHong Zhang 904a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 905a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 906a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 907a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 908a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 909a9d4b620SHong Zhang 910a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 911a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 912a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 913a9d4b620SHong Zhang 914a9d4b620SHong Zhang /* supperdiagonal part */ 915a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 916a9d4b620SHong Zhang 917a9d4b620SHong Zhang PetscFunctionReturn(0); 918a9d4b620SHong Zhang } 919a9d4b620SHong Zhang 920a9d4b620SHong Zhang #undef __FUNCT__ 92140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 92240781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 923a30f8f8cSSatish Balay { 924a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 925a30f8f8cSSatish Balay int ierr,nt; 926a30f8f8cSSatish Balay 927a30f8f8cSSatish Balay PetscFunctionBegin; 928a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 929b5df2d14SHong Zhang if (nt != A->n) { 93029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 931a30f8f8cSSatish Balay } 932a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 933b5df2d14SHong Zhang if (nt != A->m) { 93429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 935a30f8f8cSSatish Balay } 93665d70643SHong Zhang 937b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 938b941877fSHong Zhang /* do diagonal part */ 939b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 940b941877fSHong Zhang /* do supperdiagonal part */ 941b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 942b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 943b941877fSHong Zhang /* do subdiagonal part */ 944b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 945b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 946b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 94765d70643SHong Zhang 948a30f8f8cSSatish Balay PetscFunctionReturn(0); 949a30f8f8cSSatish Balay } 950a30f8f8cSSatish Balay 9514a2ae208SSatish Balay #undef __FUNCT__ 9524a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 953a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 954a30f8f8cSSatish Balay { 955de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 956a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 957a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 958a9d4b620SHong Zhang 959a9d4b620SHong Zhang PetscFunctionBegin; 960a9d4b620SHong Zhang /* 961a9d4b620SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD," MatMultAdd is called ...\n"); 962a9d4b620SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 963a9d4b620SHong Zhang */ 964a9d4b620SHong Zhang /* diagonal part */ 965a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 966a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 967a9d4b620SHong Zhang 968a9d4b620SHong Zhang /* subdiagonal part */ 969a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 972a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 973a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 974a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 975a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 976a9d4b620SHong Zhang 977a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 978a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 979a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 980a9d4b620SHong Zhang 981a9d4b620SHong Zhang /* supperdiagonal part */ 982a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 983a9d4b620SHong Zhang 984a9d4b620SHong Zhang PetscFunctionReturn(0); 985a9d4b620SHong Zhang } 986a9d4b620SHong Zhang 987a9d4b620SHong Zhang #undef __FUNCT__ 988a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 989a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 990a9d4b620SHong Zhang { 991a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 992aa482183SHong Zhang int ierr; 993a30f8f8cSSatish Balay 994a30f8f8cSSatish Balay PetscFunctionBegin; 995b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 996b941877fSHong Zhang /* do diagonal part */ 997b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 998b941877fSHong Zhang /* do supperdiagonal part */ 999b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1000de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1001de8b6608SHong Zhang 1002b941877fSHong Zhang /* do subdiagonal part */ 1003a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1004a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1005a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1006aa482183SHong Zhang 1007a30f8f8cSSatish Balay PetscFunctionReturn(0); 1008a30f8f8cSSatish Balay } 1009a30f8f8cSSatish Balay 10104a2ae208SSatish Balay #undef __FUNCT__ 10114a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1012a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1013a30f8f8cSSatish Balay { 1014a30f8f8cSSatish Balay PetscFunctionBegin; 101529bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 101696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1017a30f8f8cSSatish Balay } 1018a30f8f8cSSatish Balay 10194a2ae208SSatish Balay #undef __FUNCT__ 10204a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1021a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1022a30f8f8cSSatish Balay { 1023a30f8f8cSSatish Balay PetscFunctionBegin; 102429bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 102596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1026a30f8f8cSSatish Balay } 1027a30f8f8cSSatish Balay 1028a30f8f8cSSatish Balay /* 1029a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1030a30f8f8cSSatish Balay diagonal block 1031a30f8f8cSSatish Balay */ 10324a2ae208SSatish Balay #undef __FUNCT__ 10334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1034a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1035a30f8f8cSSatish Balay { 1036a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1037a30f8f8cSSatish Balay int ierr; 1038a30f8f8cSSatish Balay 1039a30f8f8cSSatish Balay PetscFunctionBegin; 104029bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1041a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1042a30f8f8cSSatish Balay PetscFunctionReturn(0); 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay 10454a2ae208SSatish Balay #undef __FUNCT__ 10464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 104787828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A) 1048a30f8f8cSSatish Balay { 1049a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1050a30f8f8cSSatish Balay int ierr; 1051a30f8f8cSSatish Balay 1052a30f8f8cSSatish Balay PetscFunctionBegin; 1053a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1054a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1055a30f8f8cSSatish Balay PetscFunctionReturn(0); 1056a30f8f8cSSatish Balay } 1057a30f8f8cSSatish Balay 10584a2ae208SSatish Balay #undef __FUNCT__ 10594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 106087828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1061a30f8f8cSSatish Balay { 1062a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 106387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1064a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1065a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1066a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1067a30f8f8cSSatish Balay 1068a30f8f8cSSatish Balay PetscFunctionBegin; 106929bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1070a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1071a30f8f8cSSatish Balay 1072a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1073a30f8f8cSSatish Balay /* 1074a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1075a30f8f8cSSatish Balay */ 1076a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1077a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1078a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1079a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1080a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1081a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1082a30f8f8cSSatish Balay } 108387828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1084a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1085a30f8f8cSSatish Balay } 1086a30f8f8cSSatish Balay 108729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1088a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1089a30f8f8cSSatish Balay 1090a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1091a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1092a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1093a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1094a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1095a30f8f8cSSatish Balay nztot = nzA + nzB; 1096a30f8f8cSSatish Balay 1097a30f8f8cSSatish Balay cmap = mat->garray; 1098a30f8f8cSSatish Balay if (v || idx) { 1099a30f8f8cSSatish Balay if (nztot) { 1100a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1101a30f8f8cSSatish Balay int imark = -1; 1102a30f8f8cSSatish Balay if (v) { 1103a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1104a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1105a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1106a30f8f8cSSatish Balay else break; 1107a30f8f8cSSatish Balay } 1108a30f8f8cSSatish Balay imark = i; 1109a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1110a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1111a30f8f8cSSatish Balay } 1112a30f8f8cSSatish Balay if (idx) { 1113a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1114a30f8f8cSSatish Balay if (imark > -1) { 1115a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1116a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay } else { 1119a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1120a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1121a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1122a30f8f8cSSatish Balay else break; 1123a30f8f8cSSatish Balay } 1124a30f8f8cSSatish Balay imark = i; 1125a30f8f8cSSatish Balay } 1126a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1127a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1128a30f8f8cSSatish Balay } 1129a30f8f8cSSatish Balay } else { 1130a30f8f8cSSatish Balay if (idx) *idx = 0; 1131a30f8f8cSSatish Balay if (v) *v = 0; 1132a30f8f8cSSatish Balay } 1133a30f8f8cSSatish Balay } 1134a30f8f8cSSatish Balay *nz = nztot; 1135a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1136a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay PetscFunctionReturn(0); 1138a30f8f8cSSatish Balay } 1139a30f8f8cSSatish Balay 11404a2ae208SSatish Balay #undef __FUNCT__ 11414a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 114287828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1143a30f8f8cSSatish Balay { 1144a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1145a30f8f8cSSatish Balay 1146a30f8f8cSSatish Balay PetscFunctionBegin; 1147a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 114829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1149a30f8f8cSSatish Balay } 1150a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1151a30f8f8cSSatish Balay PetscFunctionReturn(0); 1152a30f8f8cSSatish Balay } 1153a30f8f8cSSatish Balay 11544a2ae208SSatish Balay #undef __FUNCT__ 11554a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1156a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1157a30f8f8cSSatish Balay { 1158a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1159a30f8f8cSSatish Balay 1160a30f8f8cSSatish Balay PetscFunctionBegin; 1161a30f8f8cSSatish Balay *bs = baij->bs; 1162a30f8f8cSSatish Balay PetscFunctionReturn(0); 1163a30f8f8cSSatish Balay } 1164a30f8f8cSSatish Balay 11654a2ae208SSatish Balay #undef __FUNCT__ 11664a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1167a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1168a30f8f8cSSatish Balay { 1169a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1170a30f8f8cSSatish Balay int ierr; 1171a30f8f8cSSatish Balay 1172a30f8f8cSSatish Balay PetscFunctionBegin; 1173a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay PetscFunctionReturn(0); 1176a30f8f8cSSatish Balay } 1177a30f8f8cSSatish Balay 11784a2ae208SSatish Balay #undef __FUNCT__ 11794a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1180a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1181a30f8f8cSSatish Balay { 1182a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1183a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1184a30f8f8cSSatish Balay int ierr; 1185a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1186a30f8f8cSSatish Balay 1187a30f8f8cSSatish Balay PetscFunctionBegin; 1188f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1189a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1190a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1191a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1192a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1193a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1194a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1195a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1196a30f8f8cSSatish Balay info->nz_used = isend[0]; 1197a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1198a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1199a30f8f8cSSatish Balay info->memory = isend[3]; 1200a30f8f8cSSatish Balay info->mallocs = isend[4]; 1201a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1202d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1203a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1204a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1205a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1206a30f8f8cSSatish Balay info->memory = irecv[3]; 1207a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1208a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1209d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1211a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1212a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1213a30f8f8cSSatish Balay info->memory = irecv[3]; 1214a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1215a30f8f8cSSatish Balay } else { 121629bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1217a30f8f8cSSatish Balay } 1218f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1219f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1220f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1221f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1222a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1223a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1224a30f8f8cSSatish Balay info->factor_mallocs = 0; 1225a30f8f8cSSatish Balay PetscFunctionReturn(0); 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 12284a2ae208SSatish Balay #undef __FUNCT__ 12294a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1230a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1231a30f8f8cSSatish Balay { 1232a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1233a30f8f8cSSatish Balay int ierr; 1234a30f8f8cSSatish Balay 1235a30f8f8cSSatish Balay PetscFunctionBegin; 1236e98b92d7SKris Buschelman switch (op) { 1237e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1238e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1239e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1240e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1241e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1242e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1243e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1244a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1245a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1246e98b92d7SKris Buschelman break; 1247e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1248a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1249a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1251e98b92d7SKris Buschelman break; 1252e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1253e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1254e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1255d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1256b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1257e98b92d7SKris Buschelman break; 1258e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1259a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1260a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1262e98b92d7SKris Buschelman break; 1263e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1264a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1265e98b92d7SKris Buschelman break; 1266e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 126729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1268e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1269a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1270e98b92d7SKris Buschelman break; 1271e98b92d7SKris Buschelman default: 127229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1273a30f8f8cSSatish Balay } 1274a30f8f8cSSatish Balay PetscFunctionReturn(0); 1275a30f8f8cSSatish Balay } 1276a30f8f8cSSatish Balay 12774a2ae208SSatish Balay #undef __FUNCT__ 1278*8115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1279*8115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1280a30f8f8cSSatish Balay { 1281*8115998fSBarry Smith int ierr; 1282a30f8f8cSSatish Balay PetscFunctionBegin; 1283*8115998fSBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B); 1284*8115998fSBarry Smith PetscFunctionReturn(0); 1285a30f8f8cSSatish Balay } 1286a30f8f8cSSatish Balay 12874a2ae208SSatish Balay #undef __FUNCT__ 12884a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1289a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1290a30f8f8cSSatish Balay { 1291a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1292a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1293a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1294a30f8f8cSSatish Balay 1295a30f8f8cSSatish Balay PetscFunctionBegin; 1296a30f8f8cSSatish Balay if (ll != rr) { 129729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1298a30f8f8cSSatish Balay } 1299a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1300a30f8f8cSSatish Balay if (rr) { 1301a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 130229bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1303a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1304a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay /*} if (ll) { */ 1306a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 130729bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1308a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1309a30f8f8cSSatish Balay /* } */ 1310a30f8f8cSSatish Balay /* scale the diagonal block */ 1311a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1312a30f8f8cSSatish Balay 1313a30f8f8cSSatish Balay /* if (rr) { */ 1314a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1315a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1316a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1317a30f8f8cSSatish Balay } 1318a30f8f8cSSatish Balay 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 132487828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag) 1325a30f8f8cSSatish Balay { 1326a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1327a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 132835d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 1329a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1330a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1331a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1332a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1333a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1334a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1335a30f8f8cSSatish Balay IS istmp; 133635d8aa7fSBarry Smith PetscTruth found; 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay PetscFunctionBegin; 1339a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay 1342a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 134382502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1344a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1345a30f8f8cSSatish Balay procs = nprocs + size; 1346b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 1347a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1348a30f8f8cSSatish Balay idx = rows[i]; 134935d8aa7fSBarry Smith found = PETSC_FALSE; 1350a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1351a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 135235d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 1353a30f8f8cSSatish Balay } 1354a30f8f8cSSatish Balay } 135529bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1356a30f8f8cSSatish Balay } 1357a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 136082502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 1361a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay nmax = work[rank]; 1363a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1364a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1365a30f8f8cSSatish Balay 1366a30f8f8cSSatish Balay /* post receives: */ 1367b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1368b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 1369a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1370a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1371a30f8f8cSSatish Balay } 1372a30f8f8cSSatish Balay 1373a30f8f8cSSatish Balay /* do sends: 1374a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1375a30f8f8cSSatish Balay the ith processor 1376a30f8f8cSSatish Balay */ 1377b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1378b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1379b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 1380a30f8f8cSSatish Balay starts[0] = 0; 1381a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1382a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1383a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1384a30f8f8cSSatish Balay } 1385a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1386a30f8f8cSSatish Balay 1387a30f8f8cSSatish Balay starts[0] = 0; 1388a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1389a30f8f8cSSatish Balay count = 0; 1390a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1391a30f8f8cSSatish Balay if (procs[i]) { 1392a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1393a30f8f8cSSatish Balay } 1394a30f8f8cSSatish Balay } 1395a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay 1397a30f8f8cSSatish Balay base = owners[rank]*bs; 1398a30f8f8cSSatish Balay 1399a30f8f8cSSatish Balay /* wait on receives */ 1400b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 1401a30f8f8cSSatish Balay source = lens + nrecvs; 1402a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1403a30f8f8cSSatish Balay while (count) { 1404a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1405a30f8f8cSSatish Balay /* unpack receives into our local space */ 1406a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1407a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1408a30f8f8cSSatish Balay lens[imdex] = n; 1409a30f8f8cSSatish Balay slen += n; 1410a30f8f8cSSatish Balay count--; 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1413a30f8f8cSSatish Balay 1414a30f8f8cSSatish Balay /* move the data into the send scatter */ 1415b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 1416a30f8f8cSSatish Balay count = 0; 1417a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1418a30f8f8cSSatish Balay values = rvalues + i*nmax; 1419a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1420a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1421a30f8f8cSSatish Balay } 1422a30f8f8cSSatish Balay } 1423a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1424a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1425a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1426a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1427a30f8f8cSSatish Balay 1428a30f8f8cSSatish Balay /* actually zap the local rows */ 1429a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1430b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1431a30f8f8cSSatish Balay 1432a30f8f8cSSatish Balay /* 1433a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1434a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1435a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1436a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1437a30f8f8cSSatish Balay 1438a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1439a30f8f8cSSatish Balay */ 1440a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1441ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1442a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1443a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1444a30f8f8cSSatish Balay } else if (diag) { 1445a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1446a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 144729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1448a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1449a30f8f8cSSatish Balay } 1450a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1451a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1452a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1453a30f8f8cSSatish Balay } 1454a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1455a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1456a30f8f8cSSatish Balay } else { 1457a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1458a30f8f8cSSatish Balay } 1459a30f8f8cSSatish Balay 1460a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1461a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1462a30f8f8cSSatish Balay 1463a30f8f8cSSatish Balay /* wait on sends */ 1464a30f8f8cSSatish Balay if (nsends) { 146582502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1466a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1467a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1468a30f8f8cSSatish Balay } 1469a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1470a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1471a30f8f8cSSatish Balay 1472a30f8f8cSSatish Balay PetscFunctionReturn(0); 1473a30f8f8cSSatish Balay } 1474a30f8f8cSSatish Balay 14754a2ae208SSatish Balay #undef __FUNCT__ 14764a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1477a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1478a30f8f8cSSatish Balay { 1479a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1480a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1481a30f8f8cSSatish Balay static int called = 0; 1482a30f8f8cSSatish Balay int ierr; 1483a30f8f8cSSatish Balay 1484a30f8f8cSSatish Balay PetscFunctionBegin; 1485a30f8f8cSSatish Balay if (!a->rank) { 1486a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1487a30f8f8cSSatish Balay } 1488a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1489a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1490a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1491a30f8f8cSSatish Balay PetscFunctionReturn(0); 1492a30f8f8cSSatish Balay } 1493a30f8f8cSSatish Balay 14944a2ae208SSatish Balay #undef __FUNCT__ 14954a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1496a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1497a30f8f8cSSatish Balay { 1498f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1499a30f8f8cSSatish Balay int ierr; 1500a30f8f8cSSatish Balay 1501a30f8f8cSSatish Balay PetscFunctionBegin; 1502a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1503a30f8f8cSSatish Balay PetscFunctionReturn(0); 1504a30f8f8cSSatish Balay } 1505a30f8f8cSSatish Balay 1506a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1507a30f8f8cSSatish Balay 15084a2ae208SSatish Balay #undef __FUNCT__ 15094a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1510a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1511a30f8f8cSSatish Balay { 1512a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1513a30f8f8cSSatish Balay Mat a,b,c,d; 1514a30f8f8cSSatish Balay PetscTruth flg; 1515a30f8f8cSSatish Balay int ierr; 1516a30f8f8cSSatish Balay 1517a30f8f8cSSatish Balay PetscFunctionBegin; 1518b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1519b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1520a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1521a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1522a30f8f8cSSatish Balay 1523a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1524a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1525a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1526a30f8f8cSSatish Balay } 1527a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1528a30f8f8cSSatish Balay PetscFunctionReturn(0); 1529a30f8f8cSSatish Balay } 1530a30f8f8cSSatish Balay 15314a2ae208SSatish Balay #undef __FUNCT__ 15324a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1533273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1534273d9f13SBarry Smith { 1535273d9f13SBarry Smith int ierr; 1536273d9f13SBarry Smith 1537273d9f13SBarry Smith PetscFunctionBegin; 1538273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1539273d9f13SBarry Smith PetscFunctionReturn(0); 1540273d9f13SBarry Smith } 1541a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1542a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1543a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1544a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1545a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1546a9d4b620SHong Zhang MatMult_MPISBAIJ, 1547a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1548a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1549a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 1553a30f8f8cSSatish Balay 0, 1554a30f8f8cSSatish Balay 0, 1555a30f8f8cSSatish Balay 0, 15562798e883SHong Zhang MatRelax_MPISBAIJ, 1557a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1558a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1559a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1560a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1561a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1562a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1563a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1564a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1567a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1568a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1569a30f8f8cSSatish Balay 0, 1570a30f8f8cSSatish Balay 0, 1571a30f8f8cSSatish Balay 0, 1572a30f8f8cSSatish Balay 0, 1573273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1574b5df2d14SHong Zhang 0, 1575a30f8f8cSSatish Balay 0, 1576a30f8f8cSSatish Balay 0, 1577a30f8f8cSSatish Balay 0, 1578a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1579a30f8f8cSSatish Balay 0, 1580a30f8f8cSSatish Balay 0, 1581a30f8f8cSSatish Balay 0, 1582a30f8f8cSSatish Balay 0, 1583a30f8f8cSSatish Balay 0, 1584a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1585a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1586a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1587a30f8f8cSSatish Balay 0, 1588a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1589a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1590a30f8f8cSSatish Balay 0, 1591a30f8f8cSSatish Balay 0, 1592a30f8f8cSSatish Balay 0, 1593a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1594a30f8f8cSSatish Balay 0, 1595a30f8f8cSSatish Balay 0, 1596a30f8f8cSSatish Balay 0, 1597a30f8f8cSSatish Balay 0, 1598a30f8f8cSSatish Balay 0, 1599a30f8f8cSSatish Balay 0, 1600a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1601a30f8f8cSSatish Balay 0, 1602a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1603a30f8f8cSSatish Balay 0, 1604a30f8f8cSSatish Balay 0, 1605a30f8f8cSSatish Balay 0, 16068a124369SBarry Smith MatGetPetscMaps_Petsc, 160724d5174aSHong Zhang 0, 160824d5174aSHong Zhang 0, 160924d5174aSHong Zhang 0, 161024d5174aSHong Zhang 0, 161124d5174aSHong Zhang 0, 161224d5174aSHong Zhang 0, 161324d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1614a30f8f8cSSatish Balay 1615a30f8f8cSSatish Balay 1616a30f8f8cSSatish Balay EXTERN_C_BEGIN 16174a2ae208SSatish Balay #undef __FUNCT__ 16184a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1619a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1620a30f8f8cSSatish Balay { 1621a30f8f8cSSatish Balay PetscFunctionBegin; 1622a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1623a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1624a30f8f8cSSatish Balay PetscFunctionReturn(0); 1625a30f8f8cSSatish Balay } 1626a30f8f8cSSatish Balay EXTERN_C_END 1627a30f8f8cSSatish Balay 1628273d9f13SBarry Smith EXTERN_C_BEGIN 16294a2ae208SSatish Balay #undef __FUNCT__ 16304a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1631b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1632b5df2d14SHong Zhang { 1633b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1634ca54ac64SHong Zhang int ierr; 1635b5df2d14SHong Zhang PetscTruth flg; 1636b5df2d14SHong Zhang 1637b5df2d14SHong Zhang PetscFunctionBegin; 1638b5df2d14SHong Zhang 1639b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1640b0a32e0cSBarry Smith B->data = (void*)b; 1641b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1642b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1643b5df2d14SHong Zhang 1644b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1645b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1646b5df2d14SHong Zhang B->mapping = 0; 1647b5df2d14SHong Zhang B->factor = 0; 1648b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1649b5df2d14SHong Zhang 1650b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1651b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1652b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1653b5df2d14SHong Zhang 1654b5df2d14SHong Zhang /* build local table of row and column ownerships */ 165582502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1656273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1657273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1658b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1659b5df2d14SHong Zhang 1660b5df2d14SHong Zhang /* build cache for off array entries formed */ 1661b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1662b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1663b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1664b5df2d14SHong Zhang b->garray = PETSC_NULL; 1665b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1666b5df2d14SHong Zhang 1667f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1668b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 166964a35ccbSBarry Smith b->setvalueslen = 0; 1670b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1671b5df2d14SHong Zhang #endif 1672b5df2d14SHong Zhang 1673b5df2d14SHong Zhang /* stuff used in block assembly */ 1674b5df2d14SHong Zhang b->barray = 0; 1675b5df2d14SHong Zhang 1676b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1677b5df2d14SHong Zhang b->lvec = 0; 1678b5df2d14SHong Zhang b->Mvctx = 0; 167940781036SHong Zhang b->slvec0 = 0; 168040781036SHong Zhang b->slvec0b = 0; 168140781036SHong Zhang b->slvec1 = 0; 168240781036SHong Zhang b->slvec1a = 0; 168340781036SHong Zhang b->slvec1b = 0; 168440781036SHong Zhang b->sMvctx = 0; 1685b5df2d14SHong Zhang 1686b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1687b5df2d14SHong Zhang b->rowindices = 0; 1688b5df2d14SHong Zhang b->rowvalues = 0; 1689b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1690b5df2d14SHong Zhang 1691b5df2d14SHong Zhang /* hash table stuff */ 1692b5df2d14SHong Zhang b->ht = 0; 1693b5df2d14SHong Zhang b->hd = 0; 1694b5df2d14SHong Zhang b->ht_size = 0; 1695b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1696b5df2d14SHong Zhang b->ht_fact = 0; 1697b5df2d14SHong Zhang b->ht_total_ct = 0; 1698b5df2d14SHong Zhang b->ht_insert_ct = 0; 1699b5df2d14SHong Zhang 1700b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1701b5df2d14SHong Zhang if (flg) { 1702f6275e2eSBarry Smith PetscReal fact = 1.39; 1703b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 170487828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1705b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1706b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1707b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1708b5df2d14SHong Zhang } 1709b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1710b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1711b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1712b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1713b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1714b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1715b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1716b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1717b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1718b5df2d14SHong Zhang PetscFunctionReturn(0); 1719b5df2d14SHong Zhang } 1720273d9f13SBarry Smith EXTERN_C_END 1721b5df2d14SHong Zhang 17224a2ae208SSatish Balay #undef __FUNCT__ 17234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1724b5df2d14SHong Zhang /*@C 1725b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1726b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1727b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1728b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang Collective on Mat 1731b5df2d14SHong Zhang 1732b5df2d14SHong Zhang Input Parameters: 1733b5df2d14SHong Zhang + A - the matrix 1734b5df2d14SHong Zhang . bs - size of blockk 1735b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1736b5df2d14SHong Zhang submatrix (same for all local rows) 1737b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17386d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17396d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17406d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1741b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1742b5df2d14SHong Zhang submatrix (same for all local rows). 1743b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1744b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1745b5df2d14SHong Zhang each block row) or PETSC_NULL. 1746b5df2d14SHong Zhang 1747b5df2d14SHong Zhang 1748b5df2d14SHong Zhang Options Database Keys: 1749b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1750b5df2d14SHong Zhang block calculations (much slower) 1751b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1752b5df2d14SHong Zhang 1753b5df2d14SHong Zhang Notes: 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1756b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1757b5df2d14SHong Zhang 1758b5df2d14SHong Zhang Storage Information: 1759b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1760b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1761b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1762b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1763b5df2d14SHong Zhang 1764b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1765b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1766b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1767b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1768b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1769b5df2d14SHong Zhang 1770b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1771b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1772b5df2d14SHong Zhang 1773b5df2d14SHong Zhang .vb 1774b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1775b5df2d14SHong Zhang ------------------- 1776b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1777b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1778b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1779b5df2d14SHong Zhang ------------------- 1780b5df2d14SHong Zhang .ve 1781b5df2d14SHong Zhang 1782b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1783b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17846d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17856d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1786b5df2d14SHong Zhang 17876d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17886d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1789b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1790b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1791b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1792b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1793b5df2d14SHong Zhang matrices. 1794b5df2d14SHong Zhang 1795b5df2d14SHong Zhang Level: intermediate 1796b5df2d14SHong Zhang 1797b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1798b5df2d14SHong Zhang 1799b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1800b5df2d14SHong Zhang @*/ 1801b5df2d14SHong Zhang 1802b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1803b5df2d14SHong Zhang { 1804b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1805eb7adc28SSatish Balay int ierr,i,mbs,Mbs; 1806273d9f13SBarry Smith PetscTruth flg2; 1807b5df2d14SHong Zhang 1808b5df2d14SHong Zhang PetscFunctionBegin; 1809273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1810273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1811273d9f13SBarry Smith 1812b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1813b5df2d14SHong Zhang 1814b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1815435da068SBarry Smith if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1816435da068SBarry Smith if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1817435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1818435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1819b5df2d14SHong Zhang if (d_nnz) { 1820b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1821b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1822b5df2d14SHong Zhang } 1823b5df2d14SHong Zhang } 1824b5df2d14SHong Zhang if (o_nnz) { 1825b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1826b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1827b5df2d14SHong Zhang } 1828b5df2d14SHong Zhang } 182919138431SHong Zhang B->preallocated = PETSC_TRUE; 183019138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 183119138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 18328a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 18338a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1834b5df2d14SHong Zhang 1835b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1836b5df2d14SHong Zhang mbs = B->m/bs; 1837b5df2d14SHong Zhang Mbs = B->M/bs; 1838b5df2d14SHong Zhang if (mbs*bs != B->m) { 183919138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1840b5df2d14SHong Zhang } 1841b5df2d14SHong Zhang 1842b5df2d14SHong Zhang b->bs = bs; 1843b5df2d14SHong Zhang b->bs2 = bs*bs; 1844b5df2d14SHong Zhang b->mbs = mbs; 1845b5df2d14SHong Zhang b->nbs = mbs; 1846b5df2d14SHong Zhang b->Mbs = Mbs; 1847b5df2d14SHong Zhang b->Nbs = Mbs; 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1850b5df2d14SHong Zhang b->rowners[0] = 0; 1851b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1852b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1853b5df2d14SHong Zhang } 1854b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1855b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1856b5df2d14SHong Zhang b->cstart = b->rstart; 1857b5df2d14SHong Zhang b->cend = b->rend; 1858b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1859b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1860b5df2d14SHong Zhang } 1861b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1862b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1865b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1869b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1870b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1871b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1872b5df2d14SHong Zhang 1873b5df2d14SHong Zhang /* build cache for off array entries formed */ 1874b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1875b5df2d14SHong Zhang 1876b5df2d14SHong Zhang PetscFunctionReturn(0); 1877b5df2d14SHong Zhang } 1878b5df2d14SHong Zhang 18794a2ae208SSatish Balay #undef __FUNCT__ 18804a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1881a30f8f8cSSatish Balay /*@C 1882a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1883a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1884a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1885a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1886a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1887a30f8f8cSSatish Balay 1888a30f8f8cSSatish Balay Collective on MPI_Comm 1889a30f8f8cSSatish Balay 1890a30f8f8cSSatish Balay Input Parameters: 1891a30f8f8cSSatish Balay + comm - MPI communicator 1892a30f8f8cSSatish Balay . bs - size of blockk 1893a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1894a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1895a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1896a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1897a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1898a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1899a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1900a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1901a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1902a30f8f8cSSatish Balay submatrix (same for all local rows) 1903a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19046d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19056d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19066d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1907a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1908a30f8f8cSSatish Balay submatrix (same for all local rows). 1909a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1910a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1911a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay Output Parameter: 1914a30f8f8cSSatish Balay . A - the matrix 1915a30f8f8cSSatish Balay 1916a30f8f8cSSatish Balay Options Database Keys: 1917a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1918a30f8f8cSSatish Balay block calculations (much slower) 1919a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1920a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1921a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1922a30f8f8cSSatish Balay 1923a30f8f8cSSatish Balay Notes: 1924a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1925a30f8f8cSSatish Balay (possibly both). 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1928a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1929a30f8f8cSSatish Balay 1930a30f8f8cSSatish Balay Storage Information: 1931a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1932a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1933a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1934a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1937a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1938a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1939a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1940a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1941a30f8f8cSSatish Balay 1942a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1943a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay .vb 1946a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1947a30f8f8cSSatish Balay ------------------- 1948a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1949a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1950a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1951a30f8f8cSSatish Balay ------------------- 1952a30f8f8cSSatish Balay .ve 1953a30f8f8cSSatish Balay 1954a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1955a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19566d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19576d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1958a30f8f8cSSatish Balay 19596d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19606d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1961a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1962a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1963a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1964a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1965a30f8f8cSSatish Balay matrices. 1966a30f8f8cSSatish Balay 1967a30f8f8cSSatish Balay Level: intermediate 1968a30f8f8cSSatish Balay 1969a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1970a30f8f8cSSatish Balay 1971a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1972a30f8f8cSSatish Balay @*/ 1973a30f8f8cSSatish Balay 1974a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1975a30f8f8cSSatish Balay { 1976273d9f13SBarry Smith int ierr,size; 1977a30f8f8cSSatish Balay 1978a30f8f8cSSatish Balay PetscFunctionBegin; 1979b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1980273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1981273d9f13SBarry Smith if (size > 1) { 1982b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1983b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1984273d9f13SBarry Smith } else { 1985273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1986273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1987273d9f13SBarry Smith } 1988a30f8f8cSSatish Balay PetscFunctionReturn(0); 1989a30f8f8cSSatish Balay } 1990a30f8f8cSSatish Balay 1991a30f8f8cSSatish Balay 19924a2ae208SSatish Balay #undef __FUNCT__ 19934a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1994a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1995a30f8f8cSSatish Balay { 1996a30f8f8cSSatish Balay Mat mat; 1997a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1998a30f8f8cSSatish Balay int ierr,len=0; 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay PetscFunctionBegin; 2001a30f8f8cSSatish Balay *newmat = 0; 2002b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2003b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 2004273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 2005b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2006a30f8f8cSSatish Balay a->bs = oldmat->bs; 2007a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2008a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2009a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2010a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2011a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2012a30f8f8cSSatish Balay 2013a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2014a30f8f8cSSatish Balay a->rend = oldmat->rend; 2015a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2016a30f8f8cSSatish Balay a->cend = oldmat->cend; 2017a30f8f8cSSatish Balay a->size = oldmat->size; 2018a30f8f8cSSatish Balay a->rank = oldmat->rank; 2019a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2020a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2021a30f8f8cSSatish Balay a->rowindices = 0; 2022a30f8f8cSSatish Balay a->rowvalues = 0; 2023a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2024a30f8f8cSSatish Balay a->barray = 0; 2025a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2026a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2027a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2028a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay /* hash table stuff */ 2031a30f8f8cSSatish Balay a->ht = 0; 2032a30f8f8cSSatish Balay a->hd = 0; 2033a30f8f8cSSatish Balay a->ht_size = 0; 2034a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2035a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2036a30f8f8cSSatish Balay a->ht_total_ct = 0; 2037a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2038a30f8f8cSSatish Balay 203982502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 2040b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 2041a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 2042a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 2043a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2044a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2045a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2046a30f8f8cSSatish Balay if (oldmat->colmap) { 2047a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2048a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2049a30f8f8cSSatish Balay #else 205082502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2051b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2052a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2053a30f8f8cSSatish Balay #endif 2054a30f8f8cSSatish Balay } else a->colmap = 0; 2055a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 205682502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2057b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2058a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2059a30f8f8cSSatish Balay } else a->garray = 0; 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2062b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2063a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2064a30f8f8cSSatish Balay 2065b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2066a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2067b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2068a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2069b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2070b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2071a30f8f8cSSatish Balay *newmat = mat; 2072a30f8f8cSSatish Balay PetscFunctionReturn(0); 2073a30f8f8cSSatish Balay } 2074a30f8f8cSSatish Balay 2075a30f8f8cSSatish Balay #include "petscsys.h" 2076a30f8f8cSSatish Balay 2077273d9f13SBarry Smith EXTERN_C_BEGIN 20784a2ae208SSatish Balay #undef __FUNCT__ 20794a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2080b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 2081a30f8f8cSSatish Balay { 2082a30f8f8cSSatish Balay Mat A; 2083a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 208487828ca2SBarry Smith PetscScalar *vals,*buf; 2085a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2086a30f8f8cSSatish Balay MPI_Status status; 2087a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2088a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2089a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2090a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2091a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2092a30f8f8cSSatish Balay 2093a30f8f8cSSatish Balay PetscFunctionBegin; 2094b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2095a30f8f8cSSatish Balay 2096a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2097a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2098a30f8f8cSSatish Balay if (!rank) { 2099b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2100a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2101552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2102a30f8f8cSSatish Balay if (header[3] < 0) { 210329bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2104a30f8f8cSSatish Balay } 2105a30f8f8cSSatish Balay } 2106a30f8f8cSSatish Balay 2107a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2108a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2109a30f8f8cSSatish Balay 211029bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2111a30f8f8cSSatish Balay 2112a30f8f8cSSatish Balay /* 2113a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2114a30f8f8cSSatish Balay divisible by the blocksize 2115a30f8f8cSSatish Balay */ 2116a30f8f8cSSatish Balay Mbs = M/bs; 2117a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2118a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2119a30f8f8cSSatish Balay else Mbs++; 2120a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2121b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2122a30f8f8cSSatish Balay } 2123a30f8f8cSSatish Balay 2124a30f8f8cSSatish Balay /* determine ownership of all rows */ 2125a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2126a30f8f8cSSatish Balay m = mbs*bs; 2127b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2128a30f8f8cSSatish Balay browners = rowners + size + 1; 2129a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2130a30f8f8cSSatish Balay rowners[0] = 0; 2131a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2132a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2133a30f8f8cSSatish Balay rstart = rowners[rank]; 2134a30f8f8cSSatish Balay rend = rowners[rank+1]; 2135a30f8f8cSSatish Balay 2136a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 213782502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2138a30f8f8cSSatish Balay if (!rank) { 2139b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2140a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2141a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 214282502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2143a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2144a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2145a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay } else { 2147a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2148a30f8f8cSSatish Balay } 2149a30f8f8cSSatish Balay 21500222edb1SHong Zhang if (!rank) { /* procs[0] */ 2151a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 215282502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2154a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2155a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2156a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2157a30f8f8cSSatish Balay } 2158a30f8f8cSSatish Balay } 2159a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2160a30f8f8cSSatish Balay 2161a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2162a30f8f8cSSatish Balay maxnz = 0; 2163a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2164a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2165a30f8f8cSSatish Balay } 216682502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay 2168a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2169a30f8f8cSSatish Balay nz = procsnz[0]; 217082502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay mycols = ibuf; 2172a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2173a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2175a30f8f8cSSatish Balay 2176a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2177a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2178a30f8f8cSSatish Balay nz = procsnz[i]; 2179a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2180a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2181a30f8f8cSSatish Balay } 2182a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2183a30f8f8cSSatish Balay if (size != 1) { 2184a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2185a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2187a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay } 2189a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21900222edb1SHong Zhang } else { /* procs[i], i>0 */ 2191a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2192a30f8f8cSSatish Balay nz = 0; 2193a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2194a30f8f8cSSatish Balay nz += locrowlens[i]; 2195a30f8f8cSSatish Balay } 219682502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay mycols = ibuf; 2198a30f8f8cSSatish Balay /* receive message of column indices*/ 2199a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 220129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2202a30f8f8cSSatish Balay } 2203a30f8f8cSSatish Balay 2204a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 220582502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2206a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 220782502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2209a30f8f8cSSatish Balay masked1 = mask + Mbs; 2210a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2211a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2212a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2213a30f8f8cSSatish Balay dcount = 0; 2214a30f8f8cSSatish Balay odcount = 0; 2215a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2216a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2217a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22180222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2219a30f8f8cSSatish Balay if (!mask[tmp]) { 2220a30f8f8cSSatish Balay mask[tmp] = 1; 22210222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22220222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2223a30f8f8cSSatish Balay } 2224a30f8f8cSSatish Balay } 2225a30f8f8cSSatish Balay rowcount++; 2226a30f8f8cSSatish Balay } 2227a30f8f8cSSatish Balay 22280222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22290222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2230a30f8f8cSSatish Balay 2231a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2232a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2233a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2234a30f8f8cSSatish Balay } 2235a30f8f8cSSatish Balay 2236a30f8f8cSSatish Balay /* create our matrix */ 22377e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2238bfe19f1aSHong Zhang CHKERRQ(ierr); 2239a30f8f8cSSatish Balay A = *newmat; 2240273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2241a30f8f8cSSatish Balay 2242a30f8f8cSSatish Balay if (!rank) { 224387828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2245a30f8f8cSSatish Balay nz = procsnz[0]; 2246a30f8f8cSSatish Balay vals = buf; 2247a30f8f8cSSatish Balay mycols = ibuf; 2248a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2249a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2250a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2251a30f8f8cSSatish Balay 2252a30f8f8cSSatish Balay /* insert into matrix */ 2253a30f8f8cSSatish Balay jj = rstart*bs; 2254a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22557e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay mycols += locrowlens[i]; 2257a30f8f8cSSatish Balay vals += locrowlens[i]; 2258a30f8f8cSSatish Balay jj++; 2259a30f8f8cSSatish Balay } 22607e06b45fSHong Zhang 2261a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2262a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2263a30f8f8cSSatish Balay nz = procsnz[i]; 2264a30f8f8cSSatish Balay vals = buf; 2265a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2267a30f8f8cSSatish Balay } 2268a30f8f8cSSatish Balay /* the last proc */ 2269a30f8f8cSSatish Balay if (size != 1){ 2270a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2271a30f8f8cSSatish Balay vals = buf; 2272a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2273a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2274a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2275a30f8f8cSSatish Balay } 2276a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22777e06b45fSHong Zhang 2278a30f8f8cSSatish Balay } else { 2279a30f8f8cSSatish Balay /* receive numeric values */ 228087828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2281a30f8f8cSSatish Balay 2282a30f8f8cSSatish Balay /* receive message of values*/ 2283a30f8f8cSSatish Balay vals = buf; 2284a30f8f8cSSatish Balay mycols = ibuf; 2285a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2286a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 228729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2288a30f8f8cSSatish Balay 2289a30f8f8cSSatish Balay /* insert into matrix */ 2290a30f8f8cSSatish Balay jj = rstart*bs; 2291a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2292a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2293a30f8f8cSSatish Balay mycols += locrowlens[i]; 2294a30f8f8cSSatish Balay vals += locrowlens[i]; 2295a30f8f8cSSatish Balay jj++; 2296a30f8f8cSSatish Balay } 2297a30f8f8cSSatish Balay } 22987e06b45fSHong Zhang 2299a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2300a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2301a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2302a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2303a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2304a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2305a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2306a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2307a30f8f8cSSatish Balay PetscFunctionReturn(0); 2308a30f8f8cSSatish Balay } 2309273d9f13SBarry Smith EXTERN_C_END 2310a30f8f8cSSatish Balay 23114a2ae208SSatish Balay #undef __FUNCT__ 23124a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2313a30f8f8cSSatish Balay /*@ 2314a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2315a30f8f8cSSatish Balay 2316a30f8f8cSSatish Balay Input Parameters: 2317a30f8f8cSSatish Balay . mat - the matrix 2318a30f8f8cSSatish Balay . fact - factor 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay Collective on Mat 2321a30f8f8cSSatish Balay 2322a30f8f8cSSatish Balay Level: advanced 2323a30f8f8cSSatish Balay 2324a30f8f8cSSatish Balay Notes: 2325a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2328a30f8f8cSSatish Balay 2329a30f8f8cSSatish Balay .seealso: MatSetOption() 2330a30f8f8cSSatish Balay @*/ 2331a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2332a30f8f8cSSatish Balay { 2333a30f8f8cSSatish Balay PetscFunctionBegin; 233429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 233596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2336a30f8f8cSSatish Balay } 233724d5174aSHong Zhang 23384a2ae208SSatish Balay #undef __FUNCT__ 23394a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 234024d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 234124d5174aSHong Zhang { 234224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2343f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2344ca54ac64SHong Zhang PetscReal atmp; 234587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2346ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2347154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 234887828ca2SBarry Smith PetscScalar *va; 23498a1c53f2SBarry Smith MatScalar *ba; 2350f4c0e9e4SHong Zhang MPI_Status stat; 235124d5174aSHong Zhang 235224d5174aSHong Zhang PetscFunctionBegin; 2353d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2354f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2355f4c0e9e4SHong Zhang 2356ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2357ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2358f4c0e9e4SHong Zhang 2359f4c0e9e4SHong Zhang bs = a->bs; 2360f4c0e9e4SHong Zhang mbs = a->mbs; 2361f4c0e9e4SHong Zhang Mbs = a->Mbs; 2362f4c0e9e4SHong Zhang ba = b->a; 2363f4c0e9e4SHong Zhang bi = b->i; 2364f4c0e9e4SHong Zhang bj = b->j; 2365ca54ac64SHong Zhang /* 2366f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2367f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2368ca54ac64SHong Zhang */ 2369f4c0e9e4SHong Zhang 2370f4c0e9e4SHong Zhang /* find ownerships */ 2371f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2372f4c0e9e4SHong Zhang /* 237304d41228SHong Zhang if (!rank){ 237404d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2375f4c0e9e4SHong Zhang } 2376f4c0e9e4SHong Zhang */ 2377f4c0e9e4SHong Zhang 2378f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 237982502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2380ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2381f4c0e9e4SHong Zhang 2382f4c0e9e4SHong Zhang /* row_max for B */ 2383b8475685SHong Zhang if (rank != size-1){ 2384f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2385f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2386f4c0e9e4SHong Zhang brow = bs*i; 2387f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2388f4c0e9e4SHong Zhang bcol = bs*(*bj); 2389f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2390ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 239104d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2392ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2393f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2394f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2395ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2396f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2397ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2398f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2399f4c0e9e4SHong Zhang } 2400f4c0e9e4SHong Zhang } 2401f4c0e9e4SHong Zhang bj++; 2402f4c0e9e4SHong Zhang } 2403f4c0e9e4SHong Zhang } 240404d41228SHong Zhang /* 240504d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 240604d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 240704d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 240804d41228SHong Zhang */ 2409f4c0e9e4SHong Zhang 2410f4c0e9e4SHong Zhang /* send values to its owners */ 2411f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2412f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2413ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2414d7d1e502SBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2415ca54ac64SHong Zhang /* 241604d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2417f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2418ca54ac64SHong Zhang */ 2419ca54ac64SHong Zhang } 2420f4c0e9e4SHong Zhang } 2421f4c0e9e4SHong Zhang 2422f4c0e9e4SHong Zhang /* receive values */ 2423ca54ac64SHong Zhang if (rank){ 2424f4c0e9e4SHong Zhang rvalues = work; 2425ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2426f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2427d7d1e502SBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2428f4c0e9e4SHong Zhang /* process values */ 2429f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2430ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2431f4c0e9e4SHong Zhang } 2432ca54ac64SHong Zhang /* 243304d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2434f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2435ca54ac64SHong Zhang */ 2436f4c0e9e4SHong Zhang } 2437ca54ac64SHong Zhang } 2438f4c0e9e4SHong Zhang 2439f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2440ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 244124d5174aSHong Zhang PetscFunctionReturn(0); 244224d5174aSHong Zhang } 24432798e883SHong Zhang 24442798e883SHong Zhang #undef __FUNCT__ 24452798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2446c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 24472798e883SHong Zhang { 24482798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2449ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2450ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2451ffe4fb16SHong Zhang Vec bb1; 2452ffe4fb16SHong Zhang 2453ffe4fb16SHong Zhang PetscFunctionBegin; 2454ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2455ffe4fb16SHong Zhang if (bs > 1) 2456ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2457ffe4fb16SHong Zhang 2458ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2459ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2460ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2461ffe4fb16SHong Zhang its--; 2462ffe4fb16SHong Zhang } 2463ffe4fb16SHong Zhang 2464ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2465ffe4fb16SHong Zhang while (its--){ 2466ffe4fb16SHong Zhang 2467ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2468ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2469ffe4fb16SHong Zhang 2470ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2471ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2472ffe4fb16SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2473ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2474ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2475ffe4fb16SHong Zhang 2476ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2477ffe4fb16SHong Zhang 2478ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2479ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2480ffe4fb16SHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2481ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2482ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2483ffe4fb16SHong Zhang 2484ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2485ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2486ffe4fb16SHong Zhang 2487ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2488ffe4fb16SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2489ffe4fb16SHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2490ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2491ffe4fb16SHong Zhang 2492ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2493ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2494ffe4fb16SHong Zhang 2495ffe4fb16SHong Zhang /* local diagonal sweep */ 2496ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2497ffe4fb16SHong Zhang } 2498ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2499ffe4fb16SHong Zhang } else { 2500ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2501ffe4fb16SHong Zhang } 2502ffe4fb16SHong Zhang PetscFunctionReturn(0); 2503ffe4fb16SHong Zhang } 2504ffe4fb16SHong Zhang 2505ffe4fb16SHong Zhang #undef __FUNCT__ 2506ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2507ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2508ffe4fb16SHong Zhang { 2509ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25102798e883SHong Zhang int ierr; 2511d05c616dSSatish Balay PetscScalar mone=-1.0; 25122798e883SHong Zhang Vec lvec1,bb1; 25132798e883SHong Zhang 25142798e883SHong Zhang PetscFunctionBegin; 251591723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25162798e883SHong Zhang if (mat->bs > 1) 25172798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25182798e883SHong Zhang 2519c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25202798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2521bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25222798e883SHong Zhang its--; 25232798e883SHong Zhang } 25242798e883SHong Zhang 25252798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25262798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25272798e883SHong Zhang while (its--){ 25282798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25292798e883SHong Zhang 25302798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25312798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25322798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25332798e883SHong Zhang 25342798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25352798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25362798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25372798e883SHong Zhang 25382798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25392798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25402798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25412798e883SHong Zhang 25422798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25432798e883SHong Zhang 2544c14dc6b6SHong Zhang /* diagonal sweep */ 2545bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25462798e883SHong Zhang } 25472798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25482798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2549c14dc6b6SHong Zhang } else { 2550c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2551c14dc6b6SHong Zhang } 25522798e883SHong Zhang PetscFunctionReturn(0); 25532798e883SHong Zhang } 25542798e883SHong Zhang 2555