xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 8115998fe213e648cf61076ec2e7e263c950dbeb)
173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h"
5a30f8f8cSSatish Balay #include "mpisbaij.h"
6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
7a30f8f8cSSatish Balay 
8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat);
940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat);
11a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int);
12a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **);
1387828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *);
1487828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode);
1587828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat);
1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec);
22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
235222a1afSHong Zhang extern int MatUseSpooles_MPISBAIJ(Mat);
24a30f8f8cSSatish Balay 
25a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2687828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
27a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
28a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
29a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
30a30f8f8cSSatish Balay    into the single precision data structures.
31a30f8f8cSSatish Balay */
32a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
33a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
34a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
35a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
36a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
37a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
38a30f8f8cSSatish Balay #else
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
42a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
43a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
44a30f8f8cSSatish Balay #endif
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay EXTERN_C_BEGIN
474a2ae208SSatish Balay #undef __FUNCT__
484a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
49a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat)
50a30f8f8cSSatish Balay {
51f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
52a30f8f8cSSatish Balay   int          ierr;
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay   PetscFunctionBegin;
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
57a30f8f8cSSatish Balay   PetscFunctionReturn(0);
58a30f8f8cSSatish Balay }
59a30f8f8cSSatish Balay EXTERN_C_END
60a30f8f8cSSatish Balay 
61a30f8f8cSSatish Balay EXTERN_C_BEGIN
624a2ae208SSatish Balay #undef __FUNCT__
634a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
64a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat)
65a30f8f8cSSatish Balay {
66f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
67a30f8f8cSSatish Balay   int          ierr;
68a30f8f8cSSatish Balay 
69a30f8f8cSSatish Balay   PetscFunctionBegin;
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
72a30f8f8cSSatish Balay   PetscFunctionReturn(0);
73a30f8f8cSSatish Balay }
74a30f8f8cSSatish Balay EXTERN_C_END
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay /*
77a30f8f8cSSatish Balay      Local utility routine that creates a mapping from the global column
78a30f8f8cSSatish Balay    number to the local number in the off-diagonal part of the local
79a30f8f8cSSatish Balay    storage of the matrix.  This is done in a non scable way since the
80a30f8f8cSSatish Balay    length of colmap equals the global matrix length.
81a30f8f8cSSatish Balay */
824a2ae208SSatish Balay #undef __FUNCT__
834a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private"
84a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat)
85a30f8f8cSSatish Balay {
86a30f8f8cSSatish Balay   PetscFunctionBegin;
8729bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
8896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
89a30f8f8cSSatish Balay }
90a30f8f8cSSatish Balay 
91a30f8f8cSSatish Balay #define CHUNKSIZE  10
92a30f8f8cSSatish Balay 
93a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
94a30f8f8cSSatish Balay { \
95a30f8f8cSSatish Balay  \
96a30f8f8cSSatish Balay     brow = row/bs;  \
97a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
98a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
99a30f8f8cSSatish Balay       bcol = col/bs; \
100a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
101a30f8f8cSSatish Balay       low = 0; high = nrow; \
102a30f8f8cSSatish Balay       while (high-low > 3) { \
103a30f8f8cSSatish Balay         t = (low+high)/2; \
104a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
105a30f8f8cSSatish Balay         else              low  = t; \
106a30f8f8cSSatish Balay       } \
107a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
108a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
109a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
110a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
111a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
112a30f8f8cSSatish Balay           else                    *bap  = value;  \
113a30f8f8cSSatish Balay           goto a_noinsert; \
114a30f8f8cSSatish Balay         } \
115a30f8f8cSSatish Balay       } \
116a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
11729bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
118a30f8f8cSSatish Balay       if (nrow >= rmax) { \
119a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
120a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
121a30f8f8cSSatish Balay         MatScalar *new_a; \
122a30f8f8cSSatish Balay  \
12329bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
124a30f8f8cSSatish Balay  \
125a30f8f8cSSatish Balay         /* malloc new storage space */ \
126a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
12782502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
128a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
129a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
130a30f8f8cSSatish Balay  \
131a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
132a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
133a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
134a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
135a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
136a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
137a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13887828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
139a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
140a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
141a30f8f8cSSatish Balay         /* free up old matrix storage */ \
142a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
143a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
144a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
145a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
146a30f8f8cSSatish Balay         } \
147a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
148a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
149a30f8f8cSSatish Balay  \
150a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
151a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
152b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
153a30f8f8cSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE; \
154a30f8f8cSSatish Balay         a->reallocs++; \
155a30f8f8cSSatish Balay         a->s_nz++; \
156a30f8f8cSSatish Balay       } \
157a30f8f8cSSatish Balay       N = nrow++ - 1;  \
158a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
159a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
160a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
161a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
162a30f8f8cSSatish Balay       } \
163a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
164a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
165a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
166a30f8f8cSSatish Balay       a_noinsert:; \
167a30f8f8cSSatish Balay     ailen[brow] = nrow; \
168a30f8f8cSSatish Balay }
169a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
170a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
171a30f8f8cSSatish Balay { \
172a30f8f8cSSatish Balay     brow = row/bs;  \
173a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
174a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
175a30f8f8cSSatish Balay       bcol = col/bs; \
176a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
177a30f8f8cSSatish Balay       low = 0; high = nrow; \
178a30f8f8cSSatish Balay       while (high-low > 3) { \
179a30f8f8cSSatish Balay         t = (low+high)/2; \
180a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
181a30f8f8cSSatish Balay         else              low  = t; \
182a30f8f8cSSatish Balay       } \
183a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
184a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
185a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
186a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
187a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
188a30f8f8cSSatish Balay           else                    *bap  = value;  \
189a30f8f8cSSatish Balay           goto b_noinsert; \
190a30f8f8cSSatish Balay         } \
191a30f8f8cSSatish Balay       } \
192a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
19329bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
194a30f8f8cSSatish Balay       if (nrow >= rmax) { \
195a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
196a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
197a30f8f8cSSatish Balay         MatScalar *new_a; \
198a30f8f8cSSatish Balay  \
19929bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
200a30f8f8cSSatish Balay  \
201a30f8f8cSSatish Balay         /* malloc new storage space */ \
202a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
20382502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
204a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
205a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
206a30f8f8cSSatish Balay  \
207a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
208a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
209a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
210a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
211a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
212a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
213a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
214a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
215a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
216a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
217a30f8f8cSSatish Balay         /* free up old matrix storage */ \
218a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
219a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
220a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
221a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
222a30f8f8cSSatish Balay         } \
223a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
224a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
225a30f8f8cSSatish Balay  \
226a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
227a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
228b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
229a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
230a30f8f8cSSatish Balay         b->reallocs++; \
231a30f8f8cSSatish Balay         b->nz++; \
232a30f8f8cSSatish Balay       } \
233a30f8f8cSSatish Balay       N = nrow++ - 1;  \
234a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
235a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
236a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
237a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
238a30f8f8cSSatish Balay       } \
239a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
240a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
241a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
242a30f8f8cSSatish Balay       b_noinsert:; \
243a30f8f8cSSatish Balay     bilen[brow] = nrow; \
244a30f8f8cSSatish Balay }
245a30f8f8cSSatish Balay #endif
246a30f8f8cSSatish Balay 
247a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2484a2ae208SSatish Balay #undef __FUNCT__
2494a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
25087828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
251a30f8f8cSSatish Balay {
252a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
253a30f8f8cSSatish Balay   int          ierr,i,N = m*n;
254a30f8f8cSSatish Balay   MatScalar    *vsingle;
255a30f8f8cSSatish Balay 
256a30f8f8cSSatish Balay   PetscFunctionBegin;
257a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
258a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
25982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
260a30f8f8cSSatish Balay     b->setvalueslen  = N;
261a30f8f8cSSatish Balay   }
262a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
263a30f8f8cSSatish Balay 
264a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
265a30f8f8cSSatish Balay     vsingle[i] = v[i];
266a30f8f8cSSatish Balay   }
267a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
268a30f8f8cSSatish Balay   PetscFunctionReturn(0);
269a30f8f8cSSatish Balay }
270a30f8f8cSSatish Balay 
2714a2ae208SSatish Balay #undef __FUNCT__
2724a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
27387828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
274a30f8f8cSSatish Balay {
275a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
276a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
277a30f8f8cSSatish Balay   MatScalar   *vsingle;
278a30f8f8cSSatish Balay 
279a30f8f8cSSatish Balay   PetscFunctionBegin;
280a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
281a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
28282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
283a30f8f8cSSatish Balay     b->setvalueslen  = N;
284a30f8f8cSSatish Balay   }
285a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
286a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
287a30f8f8cSSatish Balay     vsingle[i] = v[i];
288a30f8f8cSSatish Balay   }
289a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
290a30f8f8cSSatish Balay   PetscFunctionReturn(0);
291a30f8f8cSSatish Balay }
292a30f8f8cSSatish Balay 
2934a2ae208SSatish Balay #undef __FUNCT__
2944a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
29587828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
296a30f8f8cSSatish Balay {
297a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
298a30f8f8cSSatish Balay   int         ierr,i,N = m*n;
299a30f8f8cSSatish Balay   MatScalar   *vsingle;
300a30f8f8cSSatish Balay 
301a30f8f8cSSatish Balay   PetscFunctionBegin;
30229bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3034d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
304a30f8f8cSSatish Balay }
305a30f8f8cSSatish Balay 
3064a2ae208SSatish Balay #undef __FUNCT__
3074a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
30887828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
309a30f8f8cSSatish Balay {
310a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
311a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
312a30f8f8cSSatish Balay   MatScalar   *vsingle;
313a30f8f8cSSatish Balay 
314a30f8f8cSSatish Balay   PetscFunctionBegin;
31529bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3164d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
317a30f8f8cSSatish Balay }
318a30f8f8cSSatish Balay #endif
319a30f8f8cSSatish Balay 
320a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
321a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
322a30f8f8cSSatish Balay */
3234a2ae208SSatish Balay #undef __FUNCT__
3244a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
325a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
326a30f8f8cSSatish Balay {
327a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
328a30f8f8cSSatish Balay   MatScalar    value;
329b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
330a30f8f8cSSatish Balay   int          ierr,i,j,row,col;
331b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
332a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
333a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
334a30f8f8cSSatish Balay 
335a30f8f8cSSatish Balay   /* Some Variables required in the macro */
336a30f8f8cSSatish Balay   Mat          A = baij->A;
337a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
338a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
339a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
340a30f8f8cSSatish Balay 
341a30f8f8cSSatish Balay   Mat          B = baij->B;
342a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
343a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
344a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
345a30f8f8cSSatish Balay 
346a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
347a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
348a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
349a30f8f8cSSatish Balay 
350a30f8f8cSSatish Balay   /* for stash */
351f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
352f65c83cfSHong Zhang   MatScalar    *v_loc=0;
353a30f8f8cSSatish Balay 
354a30f8f8cSSatish Balay   PetscFunctionBegin;
355a30f8f8cSSatish Balay 
356a30f8f8cSSatish Balay   if(!baij->donotstash){
35782502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
35882502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
359a30f8f8cSSatish Balay   }
360a30f8f8cSSatish Balay 
361a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
362a30f8f8cSSatish Balay     if (im[i] < 0) continue;
363a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
364b5df2d14SHong Zhang     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
365a30f8f8cSSatish Balay #endif
366a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
367a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
368a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
369f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
370a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
371a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
372a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
373a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
374a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
375a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
376a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
377a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
378a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
379b5df2d14SHong Zhang         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");}
380a30f8f8cSSatish Balay #endif
381a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
382a30f8f8cSSatish Balay           if (mat->was_assembled) {
383a30f8f8cSSatish Balay             if (!baij->colmap) {
384a30f8f8cSSatish Balay               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
385a30f8f8cSSatish Balay             }
386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
387a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
38871730473SSatish Balay             col  = col - 1;
389a30f8f8cSSatish Balay #else
39071730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
391a30f8f8cSSatish Balay #endif
392a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
393a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
394a30f8f8cSSatish Balay               col =  in[j];
395a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
396a30f8f8cSSatish Balay               B = baij->B;
397a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
398a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
399a30f8f8cSSatish Balay               ba=b->a;
40071730473SSatish Balay             } else col += in[j]%bs;
401a30f8f8cSSatish Balay           } else col = in[j];
402a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
403a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
404a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
405a30f8f8cSSatish Balay         }
406a30f8f8cSSatish Balay       }
407a30f8f8cSSatish Balay     } else {  /* off processor entry */
408a30f8f8cSSatish Balay       if (!baij->donotstash) {
409a30f8f8cSSatish Balay         n_loc = 0;
410a30f8f8cSSatish Balay         for (j=0; j<n; j++){
411f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
412a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
413a30f8f8cSSatish Balay           if (roworiented) {
414a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
415a30f8f8cSSatish Balay           } else {
416a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
417a30f8f8cSSatish Balay           }
418a30f8f8cSSatish Balay           n_loc++;
419a30f8f8cSSatish Balay         }
420a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       }
422a30f8f8cSSatish Balay     }
423a30f8f8cSSatish Balay   }
424a30f8f8cSSatish Balay 
425a30f8f8cSSatish Balay   if(!baij->donotstash){
426a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
427a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
428a30f8f8cSSatish Balay   }
429a30f8f8cSSatish Balay   PetscFunctionReturn(0);
430a30f8f8cSSatish Balay }
431a30f8f8cSSatish Balay 
4324a2ae208SSatish Balay #undef __FUNCT__
4334a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
434a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
435a30f8f8cSSatish Balay {
436a30f8f8cSSatish Balay   PetscFunctionBegin;
43729bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
43896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
439a30f8f8cSSatish Balay }
440a30f8f8cSSatish Balay 
441a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
442a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
443a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
444a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
4454a2ae208SSatish Balay #undef __FUNCT__
4464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
447a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
448a30f8f8cSSatish Balay {
449a30f8f8cSSatish Balay   PetscFunctionBegin;
45029bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
45196e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
452a30f8f8cSSatish Balay }
453a30f8f8cSSatish Balay 
4544a2ae208SSatish Balay #undef __FUNCT__
4554a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
456a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
457a30f8f8cSSatish Balay {
458a30f8f8cSSatish Balay   PetscFunctionBegin;
45929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
46096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
461a30f8f8cSSatish Balay }
462a30f8f8cSSatish Balay 
4634a2ae208SSatish Balay #undef __FUNCT__
4644a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
46587828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
466a30f8f8cSSatish Balay {
467f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
468a30f8f8cSSatish Balay   int          bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
469a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
470a30f8f8cSSatish Balay 
471a30f8f8cSSatish Balay   PetscFunctionBegin;
472a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
47329bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
474b5df2d14SHong Zhang     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
475a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
476a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
477a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
47829bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
479b5df2d14SHong Zhang         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
480a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
481a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
482c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
483a30f8f8cSSatish Balay         } else {
484a30f8f8cSSatish Balay           if (!baij->colmap) {
485a30f8f8cSSatish Balay             ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
486a30f8f8cSSatish Balay           }
487a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
488a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
489a30f8f8cSSatish Balay           data --;
490a30f8f8cSSatish Balay #else
491a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
492a30f8f8cSSatish Balay #endif
493a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
494a30f8f8cSSatish Balay           else {
495a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
496c8407628SSatish Balay             ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
497a30f8f8cSSatish Balay           }
498a30f8f8cSSatish Balay         }
499a30f8f8cSSatish Balay       }
500a30f8f8cSSatish Balay     } else {
50129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
502a30f8f8cSSatish Balay     }
503a30f8f8cSSatish Balay   }
504a30f8f8cSSatish Balay  PetscFunctionReturn(0);
505a30f8f8cSSatish Balay }
506a30f8f8cSSatish Balay 
5074a2ae208SSatish Balay #undef __FUNCT__
5084a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
509a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
510a30f8f8cSSatish Balay {
511a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
512bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
513bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
514a30f8f8cSSatish Balay   int        ierr;
515a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
516a30f8f8cSSatish Balay 
517a30f8f8cSSatish Balay   PetscFunctionBegin;
518a30f8f8cSSatish Balay   if (baij->size == 1) {
519a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
520a30f8f8cSSatish Balay   } else {
521a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
522f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
523a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
524a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
525a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
526a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
527a30f8f8cSSatish Balay       /*
528a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
529a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
530a30f8f8cSSatish Balay       */
531d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
532a30f8f8cSSatish Balay       /*
533a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
534a30f8f8cSSatish Balay       PetscSynchronizedFlush(PETSC_COMM_WORLD); */
535a30f8f8cSSatish Balay 
536a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
537a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
538a30f8f8cSSatish Balay     } else {
53929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
540a30f8f8cSSatish Balay     }
541a30f8f8cSSatish Balay   }
542a30f8f8cSSatish Balay   PetscFunctionReturn(0);
543a30f8f8cSSatish Balay }
544a30f8f8cSSatish Balay 
545a30f8f8cSSatish Balay /*
546a30f8f8cSSatish Balay   Creates the hash table, and sets the table
547a30f8f8cSSatish Balay   This table is created only once.
548a30f8f8cSSatish Balay   If new entried need to be added to the matrix
549a30f8f8cSSatish Balay   then the hash table has to be destroyed and
550a30f8f8cSSatish Balay   recreated.
551a30f8f8cSSatish Balay */
5524a2ae208SSatish Balay #undef __FUNCT__
5534a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
554a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
555a30f8f8cSSatish Balay {
556a30f8f8cSSatish Balay   PetscFunctionBegin;
55729bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
55896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
559a30f8f8cSSatish Balay }
560a30f8f8cSSatish Balay 
5614a2ae208SSatish Balay #undef __FUNCT__
5624a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
563a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
564a30f8f8cSSatish Balay {
565a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
566a30f8f8cSSatish Balay   int         ierr,nstash,reallocs;
567a30f8f8cSSatish Balay   InsertMode  addv;
568a30f8f8cSSatish Balay 
569a30f8f8cSSatish Balay   PetscFunctionBegin;
570a30f8f8cSSatish Balay   if (baij->donotstash) {
571a30f8f8cSSatish Balay     PetscFunctionReturn(0);
572a30f8f8cSSatish Balay   }
573a30f8f8cSSatish Balay 
574a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
575a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
57729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
578a30f8f8cSSatish Balay   }
579a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
580a30f8f8cSSatish Balay 
581a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
582a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
583a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
584b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
585a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
586b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
587a30f8f8cSSatish Balay   PetscFunctionReturn(0);
588a30f8f8cSSatish Balay }
589a30f8f8cSSatish Balay 
5904a2ae208SSatish Balay #undef __FUNCT__
5914a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
592a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
593a30f8f8cSSatish Balay {
594a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
595a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
596a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
597a30f8f8cSSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
598a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
599a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
600a30f8f8cSSatish Balay   MatScalar   *val;
601a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
6025222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
6035222a1afSHong Zhang   PetscTruth  flag;
6045222a1afSHong Zhang #endif
605a30f8f8cSSatish Balay 
606a30f8f8cSSatish Balay   PetscFunctionBegin;
607a30f8f8cSSatish Balay 
608a30f8f8cSSatish Balay   if (!baij->donotstash) {
609a30f8f8cSSatish Balay     while (1) {
610a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
611a30f8f8cSSatish Balay       /*
612a30f8f8cSSatish Balay       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
613a30f8f8cSSatish Balay       PetscSynchronizedFlush(PETSC_COMM_WORLD);
614a30f8f8cSSatish Balay       */
615a30f8f8cSSatish Balay       if (!flg) break;
616a30f8f8cSSatish Balay 
617a30f8f8cSSatish Balay       for (i=0; i<n;) {
618a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
619a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
620a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
621a30f8f8cSSatish Balay         else       ncols = n-i;
622a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
623a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
624a30f8f8cSSatish Balay         i = j;
625a30f8f8cSSatish Balay       }
626a30f8f8cSSatish Balay     }
627a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
628a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
629a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
630a30f8f8cSSatish Balay        restore the original flags */
631a30f8f8cSSatish Balay     r1 = baij->roworiented;
632a30f8f8cSSatish Balay     r2 = a->roworiented;
633a30f8f8cSSatish Balay     r3 = b->roworiented;
634a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
635a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
636a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
637a30f8f8cSSatish Balay     while (1) {
638a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
639a30f8f8cSSatish Balay       if (!flg) break;
640a30f8f8cSSatish Balay 
641a30f8f8cSSatish Balay       for (i=0; i<n;) {
642a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
643a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
644a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
645a30f8f8cSSatish Balay         else       ncols = n-i;
646a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
647a30f8f8cSSatish Balay         i = j;
648a30f8f8cSSatish Balay       }
649a30f8f8cSSatish Balay     }
650a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     baij->roworiented = r1;
652a30f8f8cSSatish Balay     a->roworiented    = r2;
653a30f8f8cSSatish Balay     b->roworiented    = r3;
654a30f8f8cSSatish Balay   }
655a30f8f8cSSatish Balay 
656a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
657a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
660a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
661a30f8f8cSSatish Balay   /*
662a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
663a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
664a30f8f8cSSatish Balay   */
665a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
666a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
668c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
669a30f8f8cSSatish Balay     }
670a30f8f8cSSatish Balay   }
671a30f8f8cSSatish Balay 
672a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
67340781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
674a30f8f8cSSatish Balay   }
675a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
676a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
679a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
680f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
681a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
682a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
683a30f8f8cSSatish Balay   }
684a30f8f8cSSatish Balay #endif
685a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
686c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
687a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
688a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
689a30f8f8cSSatish Balay   }
690a30f8f8cSSatish Balay 
691a30f8f8cSSatish Balay   if (baij->rowvalues) {
692a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
693a30f8f8cSSatish Balay     baij->rowvalues = 0;
694a30f8f8cSSatish Balay   }
6955222a1afSHong Zhang 
6965222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
6975222a1afSHong Zhang   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
6985222a1afSHong Zhang   if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); }
6995222a1afSHong Zhang #endif
700a30f8f8cSSatish Balay   PetscFunctionReturn(0);
701a30f8f8cSSatish Balay }
702a30f8f8cSSatish Balay 
7034a2ae208SSatish Balay #undef __FUNCT__
7044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
705b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
706a30f8f8cSSatish Balay {
707a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
708fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
709a30f8f8cSSatish Balay   PetscTruth        isascii,isdraw;
710b0a32e0cSBarry Smith   PetscViewer       sviewer;
711f3ef73ceSBarry Smith   PetscViewerFormat format;
712a30f8f8cSSatish Balay 
713a30f8f8cSSatish Balay   PetscFunctionBegin;
714b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
715fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   if (isascii) {
717b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
718fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_INFO_LONG) {
719a30f8f8cSSatish Balay       MatInfo info;
720a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
721a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
722b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
723b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
724a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
725a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
726b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
727a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
728b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
729b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
730a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
731a30f8f8cSSatish Balay       PetscFunctionReturn(0);
732fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
733b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
734a30f8f8cSSatish Balay       PetscFunctionReturn(0);
735a30f8f8cSSatish Balay     }
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay 
738a30f8f8cSSatish Balay   if (isdraw) {
739b0a32e0cSBarry Smith     PetscDraw       draw;
740a30f8f8cSSatish Balay     PetscTruth isnull;
741b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
742b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
743a30f8f8cSSatish Balay   }
744a30f8f8cSSatish Balay 
745a30f8f8cSSatish Balay   if (size == 1) {
746e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
747a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
748a30f8f8cSSatish Balay   } else {
749a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
750a30f8f8cSSatish Balay     Mat         A;
75165d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
75265d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
753b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
754a30f8f8cSSatish Balay     MatScalar   *a;
755a30f8f8cSSatish Balay 
756a30f8f8cSSatish Balay     if (!rank) {
757bc0ba53dSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
758a30f8f8cSSatish Balay     } else {
759f65c83cfSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
760a30f8f8cSSatish Balay     }
761b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
762a30f8f8cSSatish Balay 
763a30f8f8cSSatish Balay     /* copy over the A part */
76465d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
765a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
76682502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
767a30f8f8cSSatish Balay 
768a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
769a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
770a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
771a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
772a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
773a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
774a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
775a30f8f8cSSatish Balay           col++; a += bs;
776a30f8f8cSSatish Balay         }
777a30f8f8cSSatish Balay       }
778a30f8f8cSSatish Balay     }
779a30f8f8cSSatish Balay     /* copy over the B part */
78065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
78165d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
782a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
783a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
784a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
785a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
786a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
787a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
788a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
789a30f8f8cSSatish Balay           col++; a += bs;
790a30f8f8cSSatish Balay         }
791a30f8f8cSSatish Balay       }
792a30f8f8cSSatish Balay     }
793a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
794a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
795a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
796a30f8f8cSSatish Balay     /*
797a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
798b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
799a30f8f8cSSatish Balay     */
800b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
80165d70643SHong Zhang     if (!rank) {
802e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
803a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
804a30f8f8cSSatish Balay     }
805b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
806a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
807a30f8f8cSSatish Balay   }
808a30f8f8cSSatish Balay   PetscFunctionReturn(0);
809a30f8f8cSSatish Balay }
810a30f8f8cSSatish Balay 
8114a2ae208SSatish Balay #undef __FUNCT__
8124a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
813b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
814a30f8f8cSSatish Balay {
815a30f8f8cSSatish Balay   int        ierr;
816a30f8f8cSSatish Balay   PetscTruth isascii,isdraw,issocket,isbinary;
817a30f8f8cSSatish Balay 
818a30f8f8cSSatish Balay   PetscFunctionBegin;
819b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
820fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
821b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
822fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   if (isascii || isdraw || issocket || isbinary) {
824a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
825a30f8f8cSSatish Balay   } else {
82629bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
827a30f8f8cSSatish Balay   }
828a30f8f8cSSatish Balay   PetscFunctionReturn(0);
829a30f8f8cSSatish Balay }
830a30f8f8cSSatish Balay 
8314a2ae208SSatish Balay #undef __FUNCT__
8324a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
833a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat)
834a30f8f8cSSatish Balay {
835a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
836a30f8f8cSSatish Balay   int         ierr;
837a30f8f8cSSatish Balay 
838a30f8f8cSSatish Balay   PetscFunctionBegin;
839a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
840b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
841a30f8f8cSSatish Balay #endif
842a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
843a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
844a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
845a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
846a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
847a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
848a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
849a30f8f8cSSatish Balay #else
850a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
851a30f8f8cSSatish Balay #endif
852a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
853a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
854a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
85540781036SHong Zhang   if (baij->slvec0) {
85640781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
85740781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
85840781036SHong Zhang   }
85940781036SHong Zhang   if (baij->slvec1) {
86040781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
86140781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
86240781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
86340781036SHong Zhang   }
86440781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
865a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
866a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
867a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
868a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
869a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
870a30f8f8cSSatish Balay #endif
871a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
872a30f8f8cSSatish Balay   PetscFunctionReturn(0);
873a30f8f8cSSatish Balay }
874a30f8f8cSSatish Balay 
8754a2ae208SSatish Balay #undef __FUNCT__
876a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
877a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
878a9d4b620SHong Zhang {
879a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
8804024bf32SHong Zhang   int         ierr,nt,mbs=a->mbs,bs=a->bs;
881a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
882a9d4b620SHong Zhang 
883a9d4b620SHong Zhang   PetscFunctionBegin;
884a9d4b620SHong Zhang   /*
885a9d4b620SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD," _1comm is called ...\n");
886a9d4b620SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
887a9d4b620SHong Zhang   */
888a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
889a9d4b620SHong Zhang   if (nt != A->n) {
890a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
891a9d4b620SHong Zhang   }
892a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
893a9d4b620SHong Zhang   if (nt != A->m) {
894a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
895a9d4b620SHong Zhang   }
896a9d4b620SHong Zhang 
897a9d4b620SHong Zhang   /* diagonal part */
898a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
899a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
900a9d4b620SHong Zhang 
901a9d4b620SHong Zhang   /* subdiagonal part */
902a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
903a9d4b620SHong Zhang 
904a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
905a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
906a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
907a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
908a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
909a9d4b620SHong Zhang 
910a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
911a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
912a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   /* supperdiagonal part */
915a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
916a9d4b620SHong Zhang 
917a9d4b620SHong Zhang   PetscFunctionReturn(0);
918a9d4b620SHong Zhang }
919a9d4b620SHong Zhang 
920a9d4b620SHong Zhang #undef __FUNCT__
92140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
92240781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
923a30f8f8cSSatish Balay {
924a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
925a30f8f8cSSatish Balay   int         ierr,nt;
926a30f8f8cSSatish Balay 
927a30f8f8cSSatish Balay   PetscFunctionBegin;
928a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
929b5df2d14SHong Zhang   if (nt != A->n) {
93029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
931a30f8f8cSSatish Balay   }
932a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
933b5df2d14SHong Zhang   if (nt != A->m) {
93429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
935a30f8f8cSSatish Balay   }
93665d70643SHong Zhang 
937b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
938b941877fSHong Zhang   /* do diagonal part */
939b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
940b941877fSHong Zhang   /* do supperdiagonal part */
941b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
942b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
943b941877fSHong Zhang   /* do subdiagonal part */
944b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
945b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
946b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
94765d70643SHong Zhang 
948a30f8f8cSSatish Balay   PetscFunctionReturn(0);
949a30f8f8cSSatish Balay }
950a30f8f8cSSatish Balay 
9514a2ae208SSatish Balay #undef __FUNCT__
9524a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
953a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
954a30f8f8cSSatish Balay {
955de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
956a9d4b620SHong Zhang   int          ierr,mbs=a->mbs,bs=a->bs;
957a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang   PetscFunctionBegin;
960a9d4b620SHong Zhang   /*
961a9d4b620SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD," MatMultAdd is called ...\n");
962a9d4b620SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
963a9d4b620SHong Zhang   */
964a9d4b620SHong Zhang   /* diagonal part */
965a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
966a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
967a9d4b620SHong Zhang 
968a9d4b620SHong Zhang   /* subdiagonal part */
969a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
970a9d4b620SHong Zhang 
971a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
972a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
973a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
974a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
975a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
976a9d4b620SHong Zhang 
977a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
978a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
979a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
980a9d4b620SHong Zhang 
981a9d4b620SHong Zhang   /* supperdiagonal part */
982a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
983a9d4b620SHong Zhang 
984a9d4b620SHong Zhang   PetscFunctionReturn(0);
985a9d4b620SHong Zhang }
986a9d4b620SHong Zhang 
987a9d4b620SHong Zhang #undef __FUNCT__
988a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
989a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
990a9d4b620SHong Zhang {
991a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
992aa482183SHong Zhang   int        ierr;
993a30f8f8cSSatish Balay 
994a30f8f8cSSatish Balay   PetscFunctionBegin;
995b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
996b941877fSHong Zhang   /* do diagonal part */
997b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
998b941877fSHong Zhang   /* do supperdiagonal part */
999b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1000de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1001de8b6608SHong Zhang 
1002b941877fSHong Zhang   /* do subdiagonal part */
1003a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1004a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1005a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1006aa482183SHong Zhang 
1007a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1008a30f8f8cSSatish Balay }
1009a30f8f8cSSatish Balay 
10104a2ae208SSatish Balay #undef __FUNCT__
10114a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1012a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1013a30f8f8cSSatish Balay {
1014a30f8f8cSSatish Balay   PetscFunctionBegin;
101529bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMult().");
101696e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1017a30f8f8cSSatish Balay }
1018a30f8f8cSSatish Balay 
10194a2ae208SSatish Balay #undef __FUNCT__
10204a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1021a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1022a30f8f8cSSatish Balay {
1023a30f8f8cSSatish Balay   PetscFunctionBegin;
102429bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMultAdd().");
102596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1026a30f8f8cSSatish Balay }
1027a30f8f8cSSatish Balay 
1028a30f8f8cSSatish Balay /*
1029a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1030a30f8f8cSSatish Balay    diagonal block
1031a30f8f8cSSatish Balay */
10324a2ae208SSatish Balay #undef __FUNCT__
10334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1034a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1035a30f8f8cSSatish Balay {
1036a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1037a30f8f8cSSatish Balay   int         ierr;
1038a30f8f8cSSatish Balay 
1039a30f8f8cSSatish Balay   PetscFunctionBegin;
104029bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1041a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1042a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1043a30f8f8cSSatish Balay }
1044a30f8f8cSSatish Balay 
10454a2ae208SSatish Balay #undef __FUNCT__
10464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
104787828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A)
1048a30f8f8cSSatish Balay {
1049a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1050a30f8f8cSSatish Balay   int         ierr;
1051a30f8f8cSSatish Balay 
1052a30f8f8cSSatish Balay   PetscFunctionBegin;
1053a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1054a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1055a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1056a30f8f8cSSatish Balay }
1057a30f8f8cSSatish Balay 
10584a2ae208SSatish Balay #undef __FUNCT__
10594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
106087828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1061a30f8f8cSSatish Balay {
1062a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
106387828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1064a30f8f8cSSatish Balay   int            bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1065a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1066a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1067a30f8f8cSSatish Balay 
1068a30f8f8cSSatish Balay   PetscFunctionBegin;
106929bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1070a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1071a30f8f8cSSatish Balay 
1072a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1073a30f8f8cSSatish Balay     /*
1074a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1075a30f8f8cSSatish Balay     */
1076a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1077a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1078a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1079a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1080a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1081a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1082a30f8f8cSSatish Balay     }
108387828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1084a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1085a30f8f8cSSatish Balay   }
1086a30f8f8cSSatish Balay 
108729bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1088a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1089a30f8f8cSSatish Balay 
1090a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1091a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1092a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1093a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1094a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1095a30f8f8cSSatish Balay   nztot = nzA + nzB;
1096a30f8f8cSSatish Balay 
1097a30f8f8cSSatish Balay   cmap  = mat->garray;
1098a30f8f8cSSatish Balay   if (v  || idx) {
1099a30f8f8cSSatish Balay     if (nztot) {
1100a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1101a30f8f8cSSatish Balay       int imark = -1;
1102a30f8f8cSSatish Balay       if (v) {
1103a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1104a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1105a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1106a30f8f8cSSatish Balay           else break;
1107a30f8f8cSSatish Balay         }
1108a30f8f8cSSatish Balay         imark = i;
1109a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1110a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1111a30f8f8cSSatish Balay       }
1112a30f8f8cSSatish Balay       if (idx) {
1113a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1114a30f8f8cSSatish Balay         if (imark > -1) {
1115a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1116a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1117a30f8f8cSSatish Balay           }
1118a30f8f8cSSatish Balay         } else {
1119a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1120a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1121a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1122a30f8f8cSSatish Balay             else break;
1123a30f8f8cSSatish Balay           }
1124a30f8f8cSSatish Balay           imark = i;
1125a30f8f8cSSatish Balay         }
1126a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1127a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1128a30f8f8cSSatish Balay       }
1129a30f8f8cSSatish Balay     } else {
1130a30f8f8cSSatish Balay       if (idx) *idx = 0;
1131a30f8f8cSSatish Balay       if (v)   *v   = 0;
1132a30f8f8cSSatish Balay     }
1133a30f8f8cSSatish Balay   }
1134a30f8f8cSSatish Balay   *nz = nztot;
1135a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1136a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1138a30f8f8cSSatish Balay }
1139a30f8f8cSSatish Balay 
11404a2ae208SSatish Balay #undef __FUNCT__
11414a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
114287828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1143a30f8f8cSSatish Balay {
1144a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1145a30f8f8cSSatish Balay 
1146a30f8f8cSSatish Balay   PetscFunctionBegin;
1147a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
114829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1149a30f8f8cSSatish Balay   }
1150a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1151a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1152a30f8f8cSSatish Balay }
1153a30f8f8cSSatish Balay 
11544a2ae208SSatish Balay #undef __FUNCT__
11554a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1156a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1157a30f8f8cSSatish Balay {
1158a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1159a30f8f8cSSatish Balay 
1160a30f8f8cSSatish Balay   PetscFunctionBegin;
1161a30f8f8cSSatish Balay   *bs = baij->bs;
1162a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1163a30f8f8cSSatish Balay }
1164a30f8f8cSSatish Balay 
11654a2ae208SSatish Balay #undef __FUNCT__
11664a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1167a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A)
1168a30f8f8cSSatish Balay {
1169a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1170a30f8f8cSSatish Balay   int         ierr;
1171a30f8f8cSSatish Balay 
1172a30f8f8cSSatish Balay   PetscFunctionBegin;
1173a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1174a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1175a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1176a30f8f8cSSatish Balay }
1177a30f8f8cSSatish Balay 
11784a2ae208SSatish Balay #undef __FUNCT__
11794a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1180a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1181a30f8f8cSSatish Balay {
1182a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1183a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1184a30f8f8cSSatish Balay   int         ierr;
1185a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1186a30f8f8cSSatish Balay 
1187a30f8f8cSSatish Balay   PetscFunctionBegin;
1188f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1189a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1190a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1191a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1192a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1193a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1194a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1195a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1196a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1197a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1198a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1199a30f8f8cSSatish Balay     info->memory       = isend[3];
1200a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1201a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1202d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1203a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1204a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1205a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1206a30f8f8cSSatish Balay     info->memory       = irecv[3];
1207a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1208a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1209d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1210a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1211a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1212a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1213a30f8f8cSSatish Balay     info->memory       = irecv[3];
1214a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1215a30f8f8cSSatish Balay   } else {
121629bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1217a30f8f8cSSatish Balay   }
1218f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1219f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1220f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1221f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1222a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1223a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1224a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1225a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1226a30f8f8cSSatish Balay }
1227a30f8f8cSSatish Balay 
12284a2ae208SSatish Balay #undef __FUNCT__
12294a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1230a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op)
1231a30f8f8cSSatish Balay {
1232a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1233a30f8f8cSSatish Balay   int         ierr;
1234a30f8f8cSSatish Balay 
1235a30f8f8cSSatish Balay   PetscFunctionBegin;
1236e98b92d7SKris Buschelman   switch (op) {
1237e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1238e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1239e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1240e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1241e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1242e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1243e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1244a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1245a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1246e98b92d7SKris Buschelman     break;
1247e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1248a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1249a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1250a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1251e98b92d7SKris Buschelman     break;
1252e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1253e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1254e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1255d03495bdSKris Buschelman   case MAT_USE_SINGLE_PRECISION_SOLVES:
1256b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1257e98b92d7SKris Buschelman     break;
1258e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1259a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1260a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1261a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1262e98b92d7SKris Buschelman     break;
1263e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1264a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1265e98b92d7SKris Buschelman     break;
1266e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
126729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1268e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1269a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1270e98b92d7SKris Buschelman     break;
1271e98b92d7SKris Buschelman   default:
127229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1273a30f8f8cSSatish Balay   }
1274a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1275a30f8f8cSSatish Balay }
1276a30f8f8cSSatish Balay 
12774a2ae208SSatish Balay #undef __FUNCT__
1278*8115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1279*8115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B)
1280a30f8f8cSSatish Balay {
1281*8115998fSBarry Smith   int ierr;
1282a30f8f8cSSatish Balay   PetscFunctionBegin;
1283*8115998fSBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);
1284*8115998fSBarry Smith   PetscFunctionReturn(0);
1285a30f8f8cSSatish Balay }
1286a30f8f8cSSatish Balay 
12874a2ae208SSatish Balay #undef __FUNCT__
12884a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1289a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1290a30f8f8cSSatish Balay {
1291a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1292a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1293a30f8f8cSSatish Balay   int         ierr,s1,s2,s3;
1294a30f8f8cSSatish Balay 
1295a30f8f8cSSatish Balay   PetscFunctionBegin;
1296a30f8f8cSSatish Balay   if (ll != rr) {
129729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1298a30f8f8cSSatish Balay   }
1299a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1300a30f8f8cSSatish Balay   if (rr) {
1301a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
130229bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1303a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1304a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1305a30f8f8cSSatish Balay     /*} if (ll) { */
1306a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
130729bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1308a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1309a30f8f8cSSatish Balay     /* } */
1310a30f8f8cSSatish Balay   /* scale  the diagonal block */
1311a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1312a30f8f8cSSatish Balay 
1313a30f8f8cSSatish Balay   /* if (rr) { */
1314a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1315a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1316a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1317a30f8f8cSSatish Balay   }
1318a30f8f8cSSatish Balay 
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
13224a2ae208SSatish Balay #undef __FUNCT__
13234a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
132487828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag)
1325a30f8f8cSSatish Balay {
1326a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1327a30f8f8cSSatish Balay   int            i,ierr,N,*rows,*owners = l->rowners,size = l->size;
132835d8aa7fSBarry Smith   int            *procs,*nprocs,j,idx,nsends,*work,row;
1329a30f8f8cSSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
1330a30f8f8cSSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1331a30f8f8cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
1332a30f8f8cSSatish Balay   MPI_Comm       comm = A->comm;
1333a30f8f8cSSatish Balay   MPI_Request    *send_waits,*recv_waits;
1334a30f8f8cSSatish Balay   MPI_Status     recv_status,*send_status;
1335a30f8f8cSSatish Balay   IS             istmp;
133635d8aa7fSBarry Smith   PetscTruth     found;
1337a30f8f8cSSatish Balay 
1338a30f8f8cSSatish Balay   PetscFunctionBegin;
1339a30f8f8cSSatish Balay   ierr = ISGetSize(is,&N);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay 
1342a30f8f8cSSatish Balay   /*  first count number of contributors to each processor */
134382502324SSatish Balay   ierr  = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr);
1344a30f8f8cSSatish Balay   ierr  = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
1345a30f8f8cSSatish Balay   procs = nprocs + size;
1346b0a32e0cSBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/
1347a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
1348a30f8f8cSSatish Balay     idx   = rows[i];
134935d8aa7fSBarry Smith     found = PETSC_FALSE;
1350a30f8f8cSSatish Balay     for (j=0; j<size; j++) {
1351a30f8f8cSSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
135235d8aa7fSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break;
1353a30f8f8cSSatish Balay       }
1354a30f8f8cSSatish Balay     }
135529bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
1356a30f8f8cSSatish Balay   }
1357a30f8f8cSSatish Balay   nsends = 0;  for (i=0; i<size; i++) { nsends += procs[i];}
1358a30f8f8cSSatish Balay 
1359a30f8f8cSSatish Balay   /* inform other processors of number of messages and max length*/
136082502324SSatish Balay   ierr   = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr);
1361a30f8f8cSSatish Balay   ierr   = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr);
1362a30f8f8cSSatish Balay   nmax   = work[rank];
1363a30f8f8cSSatish Balay   nrecvs = work[size+rank];
1364a30f8f8cSSatish Balay   ierr   = PetscFree(work);CHKERRQ(ierr);
1365a30f8f8cSSatish Balay 
1366a30f8f8cSSatish Balay   /* post receives:   */
1367b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr);
1368b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
1369a30f8f8cSSatish Balay   for (i=0; i<nrecvs; i++) {
1370a30f8f8cSSatish Balay     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
1371a30f8f8cSSatish Balay   }
1372a30f8f8cSSatish Balay 
1373a30f8f8cSSatish Balay   /* do sends:
1374a30f8f8cSSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
1375a30f8f8cSSatish Balay      the ith processor
1376a30f8f8cSSatish Balay   */
1377b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr);
1378b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1379b0a32e0cSBarry Smith   ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr);
1380a30f8f8cSSatish Balay   starts[0]  = 0;
1381a30f8f8cSSatish Balay   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
1382a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
1383a30f8f8cSSatish Balay     svalues[starts[owner[i]]++] = rows[i];
1384a30f8f8cSSatish Balay   }
1385a30f8f8cSSatish Balay   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
1386a30f8f8cSSatish Balay 
1387a30f8f8cSSatish Balay   starts[0] = 0;
1388a30f8f8cSSatish Balay   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
1389a30f8f8cSSatish Balay   count = 0;
1390a30f8f8cSSatish Balay   for (i=0; i<size; i++) {
1391a30f8f8cSSatish Balay     if (procs[i]) {
1392a30f8f8cSSatish Balay       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
1393a30f8f8cSSatish Balay     }
1394a30f8f8cSSatish Balay   }
1395a30f8f8cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
1396a30f8f8cSSatish Balay 
1397a30f8f8cSSatish Balay   base = owners[rank]*bs;
1398a30f8f8cSSatish Balay 
1399a30f8f8cSSatish Balay   /*  wait on receives */
1400b0a32e0cSBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr);
1401a30f8f8cSSatish Balay   source = lens + nrecvs;
1402a30f8f8cSSatish Balay   count  = nrecvs; slen = 0;
1403a30f8f8cSSatish Balay   while (count) {
1404a30f8f8cSSatish Balay     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
1405a30f8f8cSSatish Balay     /* unpack receives into our local space */
1406a30f8f8cSSatish Balay     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
1407a30f8f8cSSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
1408a30f8f8cSSatish Balay     lens[imdex]    = n;
1409a30f8f8cSSatish Balay     slen          += n;
1410a30f8f8cSSatish Balay     count--;
1411a30f8f8cSSatish Balay   }
1412a30f8f8cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
1413a30f8f8cSSatish Balay 
1414a30f8f8cSSatish Balay   /* move the data into the send scatter */
1415b0a32e0cSBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr);
1416a30f8f8cSSatish Balay   count = 0;
1417a30f8f8cSSatish Balay   for (i=0; i<nrecvs; i++) {
1418a30f8f8cSSatish Balay     values = rvalues + i*nmax;
1419a30f8f8cSSatish Balay     for (j=0; j<lens[i]; j++) {
1420a30f8f8cSSatish Balay       lrows[count++] = values[j] - base;
1421a30f8f8cSSatish Balay     }
1422a30f8f8cSSatish Balay   }
1423a30f8f8cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1424a30f8f8cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1425a30f8f8cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1426a30f8f8cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
1427a30f8f8cSSatish Balay 
1428a30f8f8cSSatish Balay   /* actually zap the local rows */
1429a30f8f8cSSatish Balay   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
1430b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
1431a30f8f8cSSatish Balay 
1432a30f8f8cSSatish Balay   /*
1433a30f8f8cSSatish Balay         Zero the required rows. If the "diagonal block" of the matrix
1434a30f8f8cSSatish Balay      is square and the user wishes to set the diagonal we use seperate
1435a30f8f8cSSatish Balay      code so that MatSetValues() is not called for each diagonal allocating
1436a30f8f8cSSatish Balay      new memory, thus calling lots of mallocs and slowing things down.
1437a30f8f8cSSatish Balay 
1438a30f8f8cSSatish Balay        Contributed by: Mathew Knepley
1439a30f8f8cSSatish Balay   */
1440a30f8f8cSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1441ff64ff16SBarry Smith   ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr);
1442a30f8f8cSSatish Balay   if (diag && (l->A->M == l->A->N)) {
1443a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr);
1444a30f8f8cSSatish Balay   } else if (diag) {
1445a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1446a30f8f8cSSatish Balay     if (((Mat_SeqSBAIJ*)l->A->data)->nonew) {
144729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1448a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
1449a30f8f8cSSatish Balay     }
1450a30f8f8cSSatish Balay     for (i=0; i<slen; i++) {
1451a30f8f8cSSatish Balay       row  = lrows[i] + rstart_bs;
1452a30f8f8cSSatish Balay       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1453a30f8f8cSSatish Balay     }
1454a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1455a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1456a30f8f8cSSatish Balay   } else {
1457a30f8f8cSSatish Balay     ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1458a30f8f8cSSatish Balay   }
1459a30f8f8cSSatish Balay 
1460a30f8f8cSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1461a30f8f8cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1462a30f8f8cSSatish Balay 
1463a30f8f8cSSatish Balay   /* wait on sends */
1464a30f8f8cSSatish Balay   if (nsends) {
146582502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1466a30f8f8cSSatish Balay     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1467a30f8f8cSSatish Balay     ierr        = PetscFree(send_status);CHKERRQ(ierr);
1468a30f8f8cSSatish Balay   }
1469a30f8f8cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1470a30f8f8cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
1471a30f8f8cSSatish Balay 
1472a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1473a30f8f8cSSatish Balay }
1474a30f8f8cSSatish Balay 
14754a2ae208SSatish Balay #undef __FUNCT__
14764a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1477a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A)
1478a30f8f8cSSatish Balay {
1479a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1480a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1481a30f8f8cSSatish Balay   static int  called = 0;
1482a30f8f8cSSatish Balay   int         ierr;
1483a30f8f8cSSatish Balay 
1484a30f8f8cSSatish Balay   PetscFunctionBegin;
1485a30f8f8cSSatish Balay   if (!a->rank) {
1486a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1487a30f8f8cSSatish Balay   }
1488a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1489a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1490a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1491a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1492a30f8f8cSSatish Balay }
1493a30f8f8cSSatish Balay 
14944a2ae208SSatish Balay #undef __FUNCT__
14954a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1496a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A)
1497a30f8f8cSSatish Balay {
1498f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1499a30f8f8cSSatish Balay   int         ierr;
1500a30f8f8cSSatish Balay 
1501a30f8f8cSSatish Balay   PetscFunctionBegin;
1502a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1503a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1504a30f8f8cSSatish Balay }
1505a30f8f8cSSatish Balay 
1506a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1507a30f8f8cSSatish Balay 
15084a2ae208SSatish Balay #undef __FUNCT__
15094a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1510a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1511a30f8f8cSSatish Balay {
1512a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1513a30f8f8cSSatish Balay   Mat         a,b,c,d;
1514a30f8f8cSSatish Balay   PetscTruth  flg;
1515a30f8f8cSSatish Balay   int         ierr;
1516a30f8f8cSSatish Balay 
1517a30f8f8cSSatish Balay   PetscFunctionBegin;
1518b5df2d14SHong Zhang   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr);
1519b5df2d14SHong Zhang   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
1520a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1521a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1522a30f8f8cSSatish Balay 
1523a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1524a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1525a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1526a30f8f8cSSatish Balay   }
1527a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1528a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1529a30f8f8cSSatish Balay }
1530a30f8f8cSSatish Balay 
15314a2ae208SSatish Balay #undef __FUNCT__
15324a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1533273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A)
1534273d9f13SBarry Smith {
1535273d9f13SBarry Smith   int        ierr;
1536273d9f13SBarry Smith 
1537273d9f13SBarry Smith   PetscFunctionBegin;
1538273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1539273d9f13SBarry Smith   PetscFunctionReturn(0);
1540273d9f13SBarry Smith }
1541a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1542a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1543a30f8f8cSSatish Balay   MatSetValues_MPISBAIJ,
1544a30f8f8cSSatish Balay   MatGetRow_MPISBAIJ,
1545a30f8f8cSSatish Balay   MatRestoreRow_MPISBAIJ,
1546a9d4b620SHong Zhang   MatMult_MPISBAIJ,
1547a30f8f8cSSatish Balay   MatMultAdd_MPISBAIJ,
1548a30f8f8cSSatish Balay   MatMultTranspose_MPISBAIJ,
1549a30f8f8cSSatish Balay   MatMultTransposeAdd_MPISBAIJ,
1550a30f8f8cSSatish Balay   0,
1551a30f8f8cSSatish Balay   0,
1552a30f8f8cSSatish Balay   0,
1553a30f8f8cSSatish Balay   0,
1554a30f8f8cSSatish Balay   0,
1555a30f8f8cSSatish Balay   0,
15562798e883SHong Zhang   MatRelax_MPISBAIJ,
1557a30f8f8cSSatish Balay   MatTranspose_MPISBAIJ,
1558a30f8f8cSSatish Balay   MatGetInfo_MPISBAIJ,
1559a30f8f8cSSatish Balay   MatEqual_MPISBAIJ,
1560a30f8f8cSSatish Balay   MatGetDiagonal_MPISBAIJ,
1561a30f8f8cSSatish Balay   MatDiagonalScale_MPISBAIJ,
1562a30f8f8cSSatish Balay   MatNorm_MPISBAIJ,
1563a30f8f8cSSatish Balay   MatAssemblyBegin_MPISBAIJ,
1564a30f8f8cSSatish Balay   MatAssemblyEnd_MPISBAIJ,
1565a30f8f8cSSatish Balay   0,
1566a30f8f8cSSatish Balay   MatSetOption_MPISBAIJ,
1567a30f8f8cSSatish Balay   MatZeroEntries_MPISBAIJ,
1568a30f8f8cSSatish Balay   MatZeroRows_MPISBAIJ,
1569a30f8f8cSSatish Balay   0,
1570a30f8f8cSSatish Balay   0,
1571a30f8f8cSSatish Balay   0,
1572a30f8f8cSSatish Balay   0,
1573273d9f13SBarry Smith   MatSetUpPreallocation_MPISBAIJ,
1574b5df2d14SHong Zhang   0,
1575a30f8f8cSSatish Balay   0,
1576a30f8f8cSSatish Balay   0,
1577a30f8f8cSSatish Balay   0,
1578a30f8f8cSSatish Balay   MatDuplicate_MPISBAIJ,
1579a30f8f8cSSatish Balay   0,
1580a30f8f8cSSatish Balay   0,
1581a30f8f8cSSatish Balay   0,
1582a30f8f8cSSatish Balay   0,
1583a30f8f8cSSatish Balay   0,
1584a30f8f8cSSatish Balay   MatGetSubMatrices_MPISBAIJ,
1585a30f8f8cSSatish Balay   MatIncreaseOverlap_MPISBAIJ,
1586a30f8f8cSSatish Balay   MatGetValues_MPISBAIJ,
1587a30f8f8cSSatish Balay   0,
1588a30f8f8cSSatish Balay   MatPrintHelp_MPISBAIJ,
1589a30f8f8cSSatish Balay   MatScale_MPISBAIJ,
1590a30f8f8cSSatish Balay   0,
1591a30f8f8cSSatish Balay   0,
1592a30f8f8cSSatish Balay   0,
1593a30f8f8cSSatish Balay   MatGetBlockSize_MPISBAIJ,
1594a30f8f8cSSatish Balay   0,
1595a30f8f8cSSatish Balay   0,
1596a30f8f8cSSatish Balay   0,
1597a30f8f8cSSatish Balay   0,
1598a30f8f8cSSatish Balay   0,
1599a30f8f8cSSatish Balay   0,
1600a30f8f8cSSatish Balay   MatSetUnfactored_MPISBAIJ,
1601a30f8f8cSSatish Balay   0,
1602a30f8f8cSSatish Balay   MatSetValuesBlocked_MPISBAIJ,
1603a30f8f8cSSatish Balay   0,
1604a30f8f8cSSatish Balay   0,
1605a30f8f8cSSatish Balay   0,
16068a124369SBarry Smith   MatGetPetscMaps_Petsc,
160724d5174aSHong Zhang   0,
160824d5174aSHong Zhang   0,
160924d5174aSHong Zhang   0,
161024d5174aSHong Zhang   0,
161124d5174aSHong Zhang   0,
161224d5174aSHong Zhang   0,
161324d5174aSHong Zhang   MatGetRowMax_MPISBAIJ};
1614a30f8f8cSSatish Balay 
1615a30f8f8cSSatish Balay 
1616a30f8f8cSSatish Balay EXTERN_C_BEGIN
16174a2ae208SSatish Balay #undef __FUNCT__
16184a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1619a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1620a30f8f8cSSatish Balay {
1621a30f8f8cSSatish Balay   PetscFunctionBegin;
1622a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1623a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1624a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1625a30f8f8cSSatish Balay }
1626a30f8f8cSSatish Balay EXTERN_C_END
1627a30f8f8cSSatish Balay 
1628273d9f13SBarry Smith EXTERN_C_BEGIN
16294a2ae208SSatish Balay #undef __FUNCT__
16304a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1631b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B)
1632b5df2d14SHong Zhang {
1633b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1634ca54ac64SHong Zhang   int          ierr;
1635b5df2d14SHong Zhang   PetscTruth   flg;
1636b5df2d14SHong Zhang 
1637b5df2d14SHong Zhang   PetscFunctionBegin;
1638b5df2d14SHong Zhang 
1639b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1640b0a32e0cSBarry Smith   B->data = (void*)b;
1641b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1642b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1643b5df2d14SHong Zhang 
1644b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1645b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1646b5df2d14SHong Zhang   B->mapping    = 0;
1647b5df2d14SHong Zhang   B->factor     = 0;
1648b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1649b5df2d14SHong Zhang 
1650b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1651b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1652b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1653b5df2d14SHong Zhang 
1654b5df2d14SHong Zhang   /* build local table of row and column ownerships */
165582502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1656273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1657273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1658b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1659b5df2d14SHong Zhang 
1660b5df2d14SHong Zhang   /* build cache for off array entries formed */
1661b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1662b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1663b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1664b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1665b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1666b5df2d14SHong Zhang 
1667f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1668b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
166964a35ccbSBarry Smith   b->setvalueslen     = 0;
1670b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1671b5df2d14SHong Zhang #endif
1672b5df2d14SHong Zhang 
1673b5df2d14SHong Zhang   /* stuff used in block assembly */
1674b5df2d14SHong Zhang   b->barray       = 0;
1675b5df2d14SHong Zhang 
1676b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1677b5df2d14SHong Zhang   b->lvec         = 0;
1678b5df2d14SHong Zhang   b->Mvctx        = 0;
167940781036SHong Zhang   b->slvec0       = 0;
168040781036SHong Zhang   b->slvec0b      = 0;
168140781036SHong Zhang   b->slvec1       = 0;
168240781036SHong Zhang   b->slvec1a      = 0;
168340781036SHong Zhang   b->slvec1b      = 0;
168440781036SHong Zhang   b->sMvctx       = 0;
1685b5df2d14SHong Zhang 
1686b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1687b5df2d14SHong Zhang   b->rowindices   = 0;
1688b5df2d14SHong Zhang   b->rowvalues    = 0;
1689b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1690b5df2d14SHong Zhang 
1691b5df2d14SHong Zhang   /* hash table stuff */
1692b5df2d14SHong Zhang   b->ht           = 0;
1693b5df2d14SHong Zhang   b->hd           = 0;
1694b5df2d14SHong Zhang   b->ht_size      = 0;
1695b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1696b5df2d14SHong Zhang   b->ht_fact      = 0;
1697b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1698b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1699b5df2d14SHong Zhang 
1700b0a32e0cSBarry Smith   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1701b5df2d14SHong Zhang   if (flg) {
1702f6275e2eSBarry Smith     PetscReal fact = 1.39;
1703b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
170487828ca2SBarry Smith     ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1705b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1706b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1707b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1708b5df2d14SHong Zhang   }
1709b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1710b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1711b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1712b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1713b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1714b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1715b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1716b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1717b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1718b5df2d14SHong Zhang   PetscFunctionReturn(0);
1719b5df2d14SHong Zhang }
1720273d9f13SBarry Smith EXTERN_C_END
1721b5df2d14SHong Zhang 
17224a2ae208SSatish Balay #undef __FUNCT__
17234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1724b5df2d14SHong Zhang /*@C
1725b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1726b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1727b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1728b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1729b5df2d14SHong Zhang 
1730b5df2d14SHong Zhang    Collective on Mat
1731b5df2d14SHong Zhang 
1732b5df2d14SHong Zhang    Input Parameters:
1733b5df2d14SHong Zhang +  A - the matrix
1734b5df2d14SHong Zhang .  bs   - size of blockk
1735b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1736b5df2d14SHong Zhang            submatrix  (same for all local rows)
1737b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17386d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17396d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17406d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1741b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1742b5df2d14SHong Zhang            submatrix (same for all local rows).
1743b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1744b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1745b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1746b5df2d14SHong Zhang 
1747b5df2d14SHong Zhang 
1748b5df2d14SHong Zhang    Options Database Keys:
1749b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1750b5df2d14SHong Zhang                      block calculations (much slower)
1751b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1752b5df2d14SHong Zhang 
1753b5df2d14SHong Zhang    Notes:
1754b5df2d14SHong Zhang 
1755b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1756b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang    Storage Information:
1759b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1760b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1761b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1762b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1763b5df2d14SHong Zhang 
1764b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1765b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1766b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1767b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1768b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1769b5df2d14SHong Zhang 
1770b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1771b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1772b5df2d14SHong Zhang 
1773b5df2d14SHong Zhang .vb
1774b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1775b5df2d14SHong Zhang           -------------------
1776b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1777b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1778b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1779b5df2d14SHong Zhang           -------------------
1780b5df2d14SHong Zhang .ve
1781b5df2d14SHong Zhang 
1782b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1783b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17846d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17856d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1786b5df2d14SHong Zhang 
17876d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17886d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1789b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1790b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1791b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1792b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1793b5df2d14SHong Zhang    matrices.
1794b5df2d14SHong Zhang 
1795b5df2d14SHong Zhang    Level: intermediate
1796b5df2d14SHong Zhang 
1797b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1798b5df2d14SHong Zhang 
1799b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1800b5df2d14SHong Zhang @*/
1801b5df2d14SHong Zhang 
1802b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1803b5df2d14SHong Zhang {
1804b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1805eb7adc28SSatish Balay   int          ierr,i,mbs,Mbs;
1806273d9f13SBarry Smith   PetscTruth   flg2;
1807b5df2d14SHong Zhang 
1808b5df2d14SHong Zhang   PetscFunctionBegin;
1809273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr);
1810273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
1811273d9f13SBarry Smith 
1812b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1813b5df2d14SHong Zhang 
1814b5df2d14SHong Zhang   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1815435da068SBarry Smith   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1816435da068SBarry Smith   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1817435da068SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1818435da068SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1819b5df2d14SHong Zhang   if (d_nnz) {
1820b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1821b5df2d14SHong Zhang       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1822b5df2d14SHong Zhang     }
1823b5df2d14SHong Zhang   }
1824b5df2d14SHong Zhang   if (o_nnz) {
1825b5df2d14SHong Zhang     for (i=0; i<B->m/bs; i++) {
1826b5df2d14SHong Zhang       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1827b5df2d14SHong Zhang     }
1828b5df2d14SHong Zhang   }
182919138431SHong Zhang   B->preallocated = PETSC_TRUE;
183019138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
183119138431SHong Zhang   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
18328a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
18338a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1834b5df2d14SHong Zhang 
1835b5df2d14SHong Zhang   b   = (Mat_MPISBAIJ*)B->data;
1836b5df2d14SHong Zhang   mbs = B->m/bs;
1837b5df2d14SHong Zhang   Mbs = B->M/bs;
1838b5df2d14SHong Zhang   if (mbs*bs != B->m) {
183919138431SHong Zhang     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1840b5df2d14SHong Zhang   }
1841b5df2d14SHong Zhang 
1842b5df2d14SHong Zhang   b->bs  = bs;
1843b5df2d14SHong Zhang   b->bs2 = bs*bs;
1844b5df2d14SHong Zhang   b->mbs = mbs;
1845b5df2d14SHong Zhang   b->nbs = mbs;
1846b5df2d14SHong Zhang   b->Mbs = Mbs;
1847b5df2d14SHong Zhang   b->Nbs = Mbs;
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1850b5df2d14SHong Zhang   b->rowners[0]    = 0;
1851b5df2d14SHong Zhang   for (i=2; i<=b->size; i++) {
1852b5df2d14SHong Zhang     b->rowners[i] += b->rowners[i-1];
1853b5df2d14SHong Zhang   }
1854b5df2d14SHong Zhang   b->rstart    = b->rowners[b->rank];
1855b5df2d14SHong Zhang   b->rend      = b->rowners[b->rank+1];
1856b5df2d14SHong Zhang   b->cstart    = b->rstart;
1857b5df2d14SHong Zhang   b->cend      = b->rend;
1858b5df2d14SHong Zhang   for (i=0; i<=b->size; i++) {
1859b5df2d14SHong Zhang     b->rowners_bs[i] = b->rowners[i]*bs;
1860b5df2d14SHong Zhang   }
1861b5df2d14SHong Zhang   b->rstart_bs = b-> rstart*bs;
1862b5df2d14SHong Zhang   b->rend_bs   = b->rend*bs;
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang   b->cstart_bs = b->cstart*bs;
1865b5df2d14SHong Zhang   b->cend_bs   = b->cend*bs;
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang 
1868b5df2d14SHong Zhang   ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
1869b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
1870b5df2d14SHong Zhang   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
1871b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang   /* build cache for off array entries formed */
1874b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1875b5df2d14SHong Zhang 
1876b5df2d14SHong Zhang   PetscFunctionReturn(0);
1877b5df2d14SHong Zhang }
1878b5df2d14SHong Zhang 
18794a2ae208SSatish Balay #undef __FUNCT__
18804a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1881a30f8f8cSSatish Balay /*@C
1882a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1883a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1884a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1885a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1886a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1887a30f8f8cSSatish Balay 
1888a30f8f8cSSatish Balay    Collective on MPI_Comm
1889a30f8f8cSSatish Balay 
1890a30f8f8cSSatish Balay    Input Parameters:
1891a30f8f8cSSatish Balay +  comm - MPI communicator
1892a30f8f8cSSatish Balay .  bs   - size of blockk
1893a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1894a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1895a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1896a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1897a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1898a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1899a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1900a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1901a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1902a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1903a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19046d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19056d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19066d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1907a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1908a30f8f8cSSatish Balay            submatrix (same for all local rows).
1909a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1910a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1911a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1912a30f8f8cSSatish Balay 
1913a30f8f8cSSatish Balay    Output Parameter:
1914a30f8f8cSSatish Balay .  A - the matrix
1915a30f8f8cSSatish Balay 
1916a30f8f8cSSatish Balay    Options Database Keys:
1917a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1918a30f8f8cSSatish Balay                      block calculations (much slower)
1919a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1920a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1921a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1922a30f8f8cSSatish Balay 
1923a30f8f8cSSatish Balay    Notes:
1924a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1925a30f8f8cSSatish Balay    (possibly both).
1926a30f8f8cSSatish Balay 
1927a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1928a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1929a30f8f8cSSatish Balay 
1930a30f8f8cSSatish Balay    Storage Information:
1931a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1932a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1933a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1934a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1935a30f8f8cSSatish Balay 
1936a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1937a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1938a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1939a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1940a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1941a30f8f8cSSatish Balay 
1942a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1943a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1944a30f8f8cSSatish Balay 
1945a30f8f8cSSatish Balay .vb
1946a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1947a30f8f8cSSatish Balay           -------------------
1948a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1949a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1950a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1951a30f8f8cSSatish Balay           -------------------
1952a30f8f8cSSatish Balay .ve
1953a30f8f8cSSatish Balay 
1954a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1955a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19566d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19576d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1958a30f8f8cSSatish Balay 
19596d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19606d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1961a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1962a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1963a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1964a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1965a30f8f8cSSatish Balay    matrices.
1966a30f8f8cSSatish Balay 
1967a30f8f8cSSatish Balay    Level: intermediate
1968a30f8f8cSSatish Balay 
1969a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1970a30f8f8cSSatish Balay 
1971a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1972a30f8f8cSSatish Balay @*/
1973a30f8f8cSSatish Balay 
1974a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
1975a30f8f8cSSatish Balay {
1976273d9f13SBarry Smith   int ierr,size;
1977a30f8f8cSSatish Balay 
1978a30f8f8cSSatish Balay   PetscFunctionBegin;
1979b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1980273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1981273d9f13SBarry Smith   if (size > 1) {
1982b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1983b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1984273d9f13SBarry Smith   } else {
1985273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1986273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1987273d9f13SBarry Smith   }
1988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1989a30f8f8cSSatish Balay }
1990a30f8f8cSSatish Balay 
1991a30f8f8cSSatish Balay 
19924a2ae208SSatish Balay #undef __FUNCT__
19934a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
1994a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1995a30f8f8cSSatish Balay {
1996a30f8f8cSSatish Balay   Mat          mat;
1997a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1998a30f8f8cSSatish Balay   int          ierr,len=0;
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay   PetscFunctionBegin;
2001a30f8f8cSSatish Balay   *newmat       = 0;
2002b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2003b5df2d14SHong Zhang   ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr);
2004273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
2005b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2006a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
2007a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2008a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2009a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2010a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2011a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2012a30f8f8cSSatish Balay 
2013a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2014a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2015a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2016a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2017a30f8f8cSSatish Balay   a->size         = oldmat->size;
2018a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2019a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2020a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2021a30f8f8cSSatish Balay   a->rowindices   = 0;
2022a30f8f8cSSatish Balay   a->rowvalues    = 0;
2023a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2024a30f8f8cSSatish Balay   a->barray       = 0;
2025a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2026a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2027a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2028a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2029a30f8f8cSSatish Balay 
2030a30f8f8cSSatish Balay   /* hash table stuff */
2031a30f8f8cSSatish Balay   a->ht           = 0;
2032a30f8f8cSSatish Balay   a->hd           = 0;
2033a30f8f8cSSatish Balay   a->ht_size      = 0;
2034a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2035a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2036a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2037a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2038a30f8f8cSSatish Balay 
203982502324SSatish Balay   ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr);
2040b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
2041a30f8f8cSSatish Balay   a->cowners    = a->rowners + a->size + 2;
2042a30f8f8cSSatish Balay   a->rowners_bs = a->cowners + a->size + 2;
2043a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
2044a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2045a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2046a30f8f8cSSatish Balay   if (oldmat->colmap) {
2047a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2048a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2049a30f8f8cSSatish Balay #else
205082502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2051b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2052a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2053a30f8f8cSSatish Balay #endif
2054a30f8f8cSSatish Balay   } else a->colmap = 0;
2055a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
205682502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2057b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2058a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2059a30f8f8cSSatish Balay   } else a->garray = 0;
2060a30f8f8cSSatish Balay 
2061a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2062b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2063a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2064a30f8f8cSSatish Balay 
2065b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
2066a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2067b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2068a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2069b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2070b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2071a30f8f8cSSatish Balay   *newmat = mat;
2072a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2073a30f8f8cSSatish Balay }
2074a30f8f8cSSatish Balay 
2075a30f8f8cSSatish Balay #include "petscsys.h"
2076a30f8f8cSSatish Balay 
2077273d9f13SBarry Smith EXTERN_C_BEGIN
20784a2ae208SSatish Balay #undef __FUNCT__
20794a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2080b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
2081a30f8f8cSSatish Balay {
2082a30f8f8cSSatish Balay   Mat          A;
2083a30f8f8cSSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
208487828ca2SBarry Smith   PetscScalar  *vals,*buf;
2085a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2086a30f8f8cSSatish Balay   MPI_Status   status;
2087a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2088a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2089a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2090a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2091a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
2092a30f8f8cSSatish Balay 
2093a30f8f8cSSatish Balay   PetscFunctionBegin;
2094b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2095a30f8f8cSSatish Balay 
2096a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2097a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2098a30f8f8cSSatish Balay   if (!rank) {
2099b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2100a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2101552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2102a30f8f8cSSatish Balay     if (header[3] < 0) {
210329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2104a30f8f8cSSatish Balay     }
2105a30f8f8cSSatish Balay   }
2106a30f8f8cSSatish Balay 
2107a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2108a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2109a30f8f8cSSatish Balay 
211029bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2111a30f8f8cSSatish Balay 
2112a30f8f8cSSatish Balay   /*
2113a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2114a30f8f8cSSatish Balay      divisible by the blocksize
2115a30f8f8cSSatish Balay   */
2116a30f8f8cSSatish Balay   Mbs        = M/bs;
2117a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2118a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2119a30f8f8cSSatish Balay   else                  Mbs++;
2120a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2121b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2122a30f8f8cSSatish Balay   }
2123a30f8f8cSSatish Balay 
2124a30f8f8cSSatish Balay   /* determine ownership of all rows */
2125a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2126a30f8f8cSSatish Balay   m          = mbs*bs;
2127b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2128a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2129a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2130a30f8f8cSSatish Balay   rowners[0] = 0;
2131a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2132a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2133a30f8f8cSSatish Balay   rstart = rowners[rank];
2134a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2135a30f8f8cSSatish Balay 
2136a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
213782502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2138a30f8f8cSSatish Balay   if (!rank) {
2139b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2140a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2141a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
214282502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2143a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2144a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2145a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2146a30f8f8cSSatish Balay   } else {
2147a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay   }
2149a30f8f8cSSatish Balay 
21500222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2151a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
215282502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2153a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2154a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2155a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2156a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2157a30f8f8cSSatish Balay       }
2158a30f8f8cSSatish Balay     }
2159a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2160a30f8f8cSSatish Balay 
2161a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2162a30f8f8cSSatish Balay     maxnz = 0;
2163a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2164a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2165a30f8f8cSSatish Balay     }
216682502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2167a30f8f8cSSatish Balay 
2168a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2169a30f8f8cSSatish Balay     nz     = procsnz[0];
217082502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay     mycols = ibuf;
2172a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2173a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2174a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2175a30f8f8cSSatish Balay 
2176a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2177a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2178a30f8f8cSSatish Balay       nz   = procsnz[i];
2179a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2181a30f8f8cSSatish Balay     }
2182a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2183a30f8f8cSSatish Balay     if (size != 1) {
2184a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2185a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2186a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2187a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay     }
2189a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21900222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2191a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2192a30f8f8cSSatish Balay     nz = 0;
2193a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2194a30f8f8cSSatish Balay       nz += locrowlens[i];
2195a30f8f8cSSatish Balay     }
219682502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2197a30f8f8cSSatish Balay     mycols = ibuf;
2198a30f8f8cSSatish Balay     /* receive message of column indices*/
2199a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2200a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
220129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2202a30f8f8cSSatish Balay   }
2203a30f8f8cSSatish Balay 
2204a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
220582502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2206a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
220782502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2209a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2210a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2211a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2212a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2213a30f8f8cSSatish Balay     dcount  = 0;
2214a30f8f8cSSatish Balay     odcount = 0;
2215a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2216a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2217a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22180222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2219a30f8f8cSSatish Balay         if (!mask[tmp]) {
2220a30f8f8cSSatish Balay           mask[tmp] = 1;
22210222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22220222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2223a30f8f8cSSatish Balay         }
2224a30f8f8cSSatish Balay       }
2225a30f8f8cSSatish Balay       rowcount++;
2226a30f8f8cSSatish Balay     }
2227a30f8f8cSSatish Balay 
22280222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22290222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2230a30f8f8cSSatish Balay 
2231a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2232a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2233a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2234a30f8f8cSSatish Balay   }
2235a30f8f8cSSatish Balay 
2236a30f8f8cSSatish Balay   /* create our matrix */
22377e06b45fSHong Zhang   ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat);
2238bfe19f1aSHong Zhang   CHKERRQ(ierr);
2239a30f8f8cSSatish Balay   A = *newmat;
2240273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2241a30f8f8cSSatish Balay 
2242a30f8f8cSSatish Balay   if (!rank) {
224387828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2244a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2245a30f8f8cSSatish Balay     nz = procsnz[0];
2246a30f8f8cSSatish Balay     vals = buf;
2247a30f8f8cSSatish Balay     mycols = ibuf;
2248a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2249a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2250a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2251a30f8f8cSSatish Balay 
2252a30f8f8cSSatish Balay     /* insert into matrix */
2253a30f8f8cSSatish Balay     jj      = rstart*bs;
2254a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22557e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay       mycols += locrowlens[i];
2257a30f8f8cSSatish Balay       vals   += locrowlens[i];
2258a30f8f8cSSatish Balay       jj++;
2259a30f8f8cSSatish Balay     }
22607e06b45fSHong Zhang 
2261a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2262a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2263a30f8f8cSSatish Balay       nz   = procsnz[i];
2264a30f8f8cSSatish Balay       vals = buf;
2265a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2267a30f8f8cSSatish Balay     }
2268a30f8f8cSSatish Balay     /* the last proc */
2269a30f8f8cSSatish Balay     if (size != 1){
2270a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2271a30f8f8cSSatish Balay       vals = buf;
2272a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2273a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2274a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2275a30f8f8cSSatish Balay     }
2276a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22777e06b45fSHong Zhang 
2278a30f8f8cSSatish Balay   } else {
2279a30f8f8cSSatish Balay     /* receive numeric values */
228087828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2281a30f8f8cSSatish Balay 
2282a30f8f8cSSatish Balay     /* receive message of values*/
2283a30f8f8cSSatish Balay     vals   = buf;
2284a30f8f8cSSatish Balay     mycols = ibuf;
2285a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2286a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
228729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2288a30f8f8cSSatish Balay 
2289a30f8f8cSSatish Balay     /* insert into matrix */
2290a30f8f8cSSatish Balay     jj      = rstart*bs;
2291a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2292a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2293a30f8f8cSSatish Balay       mycols += locrowlens[i];
2294a30f8f8cSSatish Balay       vals   += locrowlens[i];
2295a30f8f8cSSatish Balay       jj++;
2296a30f8f8cSSatish Balay     }
2297a30f8f8cSSatish Balay   }
22987e06b45fSHong Zhang 
2299a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2300a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2301a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2302a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2303a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2304a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2305a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2306a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2307a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2308a30f8f8cSSatish Balay }
2309273d9f13SBarry Smith EXTERN_C_END
2310a30f8f8cSSatish Balay 
23114a2ae208SSatish Balay #undef __FUNCT__
23124a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2313a30f8f8cSSatish Balay /*@
2314a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2315a30f8f8cSSatish Balay 
2316a30f8f8cSSatish Balay    Input Parameters:
2317a30f8f8cSSatish Balay .  mat  - the matrix
2318a30f8f8cSSatish Balay .  fact - factor
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay    Collective on Mat
2321a30f8f8cSSatish Balay 
2322a30f8f8cSSatish Balay    Level: advanced
2323a30f8f8cSSatish Balay 
2324a30f8f8cSSatish Balay   Notes:
2325a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2328a30f8f8cSSatish Balay 
2329a30f8f8cSSatish Balay .seealso: MatSetOption()
2330a30f8f8cSSatish Balay @*/
2331a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2332a30f8f8cSSatish Balay {
2333a30f8f8cSSatish Balay   PetscFunctionBegin;
233429bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
233596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2336a30f8f8cSSatish Balay }
233724d5174aSHong Zhang 
23384a2ae208SSatish Balay #undef __FUNCT__
23394a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
234024d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v)
234124d5174aSHong Zhang {
234224d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2343f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2344ca54ac64SHong Zhang   PetscReal    atmp;
234587828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2346ca54ac64SHong Zhang   int          ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2347154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
234887828ca2SBarry Smith   PetscScalar  *va;
23498a1c53f2SBarry Smith   MatScalar    *ba;
2350f4c0e9e4SHong Zhang   MPI_Status   stat;
235124d5174aSHong Zhang 
235224d5174aSHong Zhang   PetscFunctionBegin;
2353d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
2354f4c0e9e4SHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2355f4c0e9e4SHong Zhang 
2356ac355199SBarry Smith   ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr);
2357ac355199SBarry Smith   ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
2358f4c0e9e4SHong Zhang 
2359f4c0e9e4SHong Zhang   bs   = a->bs;
2360f4c0e9e4SHong Zhang   mbs  = a->mbs;
2361f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2362f4c0e9e4SHong Zhang   ba   = b->a;
2363f4c0e9e4SHong Zhang   bi   = b->i;
2364f4c0e9e4SHong Zhang   bj   = b->j;
2365ca54ac64SHong Zhang   /*
2366f4c0e9e4SHong Zhang   PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
2367f4c0e9e4SHong Zhang   PetscSynchronizedFlush(PETSC_COMM_WORLD);
2368ca54ac64SHong Zhang   */
2369f4c0e9e4SHong Zhang 
2370f4c0e9e4SHong Zhang   /* find ownerships */
2371f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2372f4c0e9e4SHong Zhang   /*
237304d41228SHong Zhang   if (!rank){
237404d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2375f4c0e9e4SHong Zhang   }
2376f4c0e9e4SHong Zhang   */
2377f4c0e9e4SHong Zhang 
2378f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
237982502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2380ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2381f4c0e9e4SHong Zhang 
2382f4c0e9e4SHong Zhang   /* row_max for B */
2383b8475685SHong Zhang   if (rank != size-1){
2384f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2385f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2386f4c0e9e4SHong Zhang       brow  = bs*i;
2387f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2388f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2389f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2390ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
239104d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2392ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2393f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2394f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2395ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2396f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2397ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2398f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2399f4c0e9e4SHong Zhang           }
2400f4c0e9e4SHong Zhang         }
2401f4c0e9e4SHong Zhang         bj++;
2402f4c0e9e4SHong Zhang       }
2403f4c0e9e4SHong Zhang     }
240404d41228SHong Zhang     /*
240504d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
240604d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
240704d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
240804d41228SHong Zhang       */
2409f4c0e9e4SHong Zhang 
2410f4c0e9e4SHong Zhang     /* send values to its owners */
2411f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2412f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2413ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2414d7d1e502SBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr);
2415ca54ac64SHong Zhang       /*
241604d41228SHong Zhang       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
2417f4c0e9e4SHong Zhang       PetscSynchronizedFlush(PETSC_COMM_WORLD);
2418ca54ac64SHong Zhang       */
2419ca54ac64SHong Zhang     }
2420f4c0e9e4SHong Zhang   }
2421f4c0e9e4SHong Zhang 
2422f4c0e9e4SHong Zhang   /* receive values */
2423ca54ac64SHong Zhang   if (rank){
2424f4c0e9e4SHong Zhang     rvalues = work;
2425ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2426f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
2427d7d1e502SBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr);
2428f4c0e9e4SHong Zhang       /* process values */
2429f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2430ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2431f4c0e9e4SHong Zhang       }
2432ca54ac64SHong Zhang       /*
243304d41228SHong Zhang       PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
2434f4c0e9e4SHong Zhang       PetscSynchronizedFlush(PETSC_COMM_WORLD);
2435ca54ac64SHong Zhang       */
2436f4c0e9e4SHong Zhang     }
2437ca54ac64SHong Zhang   }
2438f4c0e9e4SHong Zhang 
2439f4c0e9e4SHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2440ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
244124d5174aSHong Zhang   PetscFunctionReturn(0);
244224d5174aSHong Zhang }
24432798e883SHong Zhang 
24442798e883SHong Zhang #undef __FUNCT__
24452798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2446c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
24472798e883SHong Zhang {
24482798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2449ffe4fb16SHong Zhang   int            ierr,mbs=mat->mbs,bs=mat->bs;
2450ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2451ffe4fb16SHong Zhang   Vec            bb1;
2452ffe4fb16SHong Zhang 
2453ffe4fb16SHong Zhang   PetscFunctionBegin;
2454ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2455ffe4fb16SHong Zhang   if (bs > 1)
2456ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2457ffe4fb16SHong Zhang 
2458ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2459ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2460ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2461ffe4fb16SHong Zhang       its--;
2462ffe4fb16SHong Zhang     }
2463ffe4fb16SHong Zhang 
2464ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2465ffe4fb16SHong Zhang     while (its--){
2466ffe4fb16SHong Zhang 
2467ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2468ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2469ffe4fb16SHong Zhang 
2470ffe4fb16SHong Zhang       /* copy xx into slvec0a */
2471ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2472ffe4fb16SHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2473ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2474ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2475ffe4fb16SHong Zhang 
2476ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2477ffe4fb16SHong Zhang 
2478ffe4fb16SHong Zhang       /* copy bb into slvec1a */
2479ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2480ffe4fb16SHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2481ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2482ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2483ffe4fb16SHong Zhang 
2484ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2485ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2486ffe4fb16SHong Zhang 
2487ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2488ffe4fb16SHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2489ffe4fb16SHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2490ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2491ffe4fb16SHong Zhang 
2492ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2493ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2494ffe4fb16SHong Zhang 
2495ffe4fb16SHong Zhang       /* local diagonal sweep */
2496ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2497ffe4fb16SHong Zhang     }
2498ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2499ffe4fb16SHong Zhang   } else {
2500ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2501ffe4fb16SHong Zhang   }
2502ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2503ffe4fb16SHong Zhang }
2504ffe4fb16SHong Zhang 
2505ffe4fb16SHong Zhang #undef __FUNCT__
2506ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2507ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2508ffe4fb16SHong Zhang {
2509ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
25102798e883SHong Zhang   int            ierr;
2511d05c616dSSatish Balay   PetscScalar    mone=-1.0;
25122798e883SHong Zhang   Vec            lvec1,bb1;
25132798e883SHong Zhang 
25142798e883SHong Zhang   PetscFunctionBegin;
251591723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
25162798e883SHong Zhang   if (mat->bs > 1)
25172798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25182798e883SHong Zhang 
2519c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25202798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2521bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25222798e883SHong Zhang       its--;
25232798e883SHong Zhang     }
25242798e883SHong Zhang 
25252798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25262798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25272798e883SHong Zhang     while (its--){
25282798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25292798e883SHong Zhang 
25302798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25312798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
25322798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
25332798e883SHong Zhang 
25342798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25352798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25362798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25372798e883SHong Zhang 
25382798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
25392798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
25402798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25412798e883SHong Zhang 
25422798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25432798e883SHong Zhang 
2544c14dc6b6SHong Zhang       /* diagonal sweep */
2545bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25462798e883SHong Zhang     }
25472798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25482798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2549c14dc6b6SHong Zhang   } else {
2550c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2551c14dc6b6SHong Zhang   }
25522798e883SHong Zhang   PetscFunctionReturn(0);
25532798e883SHong Zhang }
25542798e883SHong Zhang 
2555