xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 828413b88010be16705f185b49d282ea5b3835b6)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
909573ac7SBarry Smith extern PetscErrorCode DisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
267087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
55a30f8f8cSSatish Balay { \
56a30f8f8cSSatish Balay  \
57a30f8f8cSSatish Balay     brow = row/bs;  \
58a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
59a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
60a30f8f8cSSatish Balay       bcol = col/bs; \
61a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
62a30f8f8cSSatish Balay       low = 0; high = nrow; \
63a30f8f8cSSatish Balay       while (high-low > 3) { \
64a30f8f8cSSatish Balay         t = (low+high)/2; \
65a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
66a30f8f8cSSatish Balay         else              low  = t; \
67a30f8f8cSSatish Balay       } \
68a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
69a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
70a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
71a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
72a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
73a30f8f8cSSatish Balay           else                    *bap  = value;  \
74a30f8f8cSSatish Balay           goto a_noinsert; \
75a30f8f8cSSatish Balay         } \
76a30f8f8cSSatish Balay       } \
77a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
78e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
79fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
80a30f8f8cSSatish Balay       N = nrow++ - 1;  \
81a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
82a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
83a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
84a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
85a30f8f8cSSatish Balay       } \
86a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
87a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
88a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
89a30f8f8cSSatish Balay       a_noinsert:; \
90a30f8f8cSSatish Balay     ailen[brow] = nrow; \
91a30f8f8cSSatish Balay }
92e5e170daSBarry Smith 
93a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
94a30f8f8cSSatish Balay { \
95a30f8f8cSSatish Balay     brow = row/bs;  \
96a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
97a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
98a30f8f8cSSatish Balay       bcol = col/bs; \
99a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
100a30f8f8cSSatish Balay       low = 0; high = nrow; \
101a30f8f8cSSatish Balay       while (high-low > 3) { \
102a30f8f8cSSatish Balay         t = (low+high)/2; \
103a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
104a30f8f8cSSatish Balay         else              low  = t; \
105a30f8f8cSSatish Balay       } \
106a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
107a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
108a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
109a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
110a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
111a30f8f8cSSatish Balay           else                    *bap  = value;  \
112a30f8f8cSSatish Balay           goto b_noinsert; \
113a30f8f8cSSatish Balay         } \
114a30f8f8cSSatish Balay       } \
115a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
116e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
117fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
118a30f8f8cSSatish Balay       N = nrow++ - 1;  \
119a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
120a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
121a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
122a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
123a30f8f8cSSatish Balay       } \
124a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
125a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
126a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
127a30f8f8cSSatish Balay       b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat            A = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat            B = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
163910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
164910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
16771fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
168a30f8f8cSSatish Balay   if (!baij->donotstash){
16959ffdab8SBarry Smith     if (n > baij->n_loc) {
17059ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17159ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
18901b2bd88SHong Zhang           if (a->ignore_ltriangular){
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19101b2bd88SHong Zhang           } else {
192e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19301b2bd88SHong Zhang           }
19401b2bd88SHong Zhang         }
195a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
196a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
197a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
198a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
199a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
200a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
201a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
202a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
204cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
205a30f8f8cSSatish Balay #endif
206a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
207a30f8f8cSSatish Balay           if (mat->was_assembled) {
208a30f8f8cSSatish Balay             if (!baij->colmap) {
209653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
210a30f8f8cSSatish Balay             }
211a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
212a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21371730473SSatish Balay             col  = col - 1;
214a30f8f8cSSatish Balay #else
21571730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
216a30f8f8cSSatish Balay #endif
217a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
218a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
219a30f8f8cSSatish Balay               col =  in[j];
220a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
221a30f8f8cSSatish Balay               B = baij->B;
222a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
223a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
224a30f8f8cSSatish Balay               ba=b->a;
22571730473SSatish Balay             } else col += in[j]%bs;
226a30f8f8cSSatish Balay           } else col = in[j];
227a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
235a30f8f8cSSatish Balay         n_loc = 0;
236a30f8f8cSSatish Balay         for (j=0; j<n; j++){
237f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
238a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
239a30f8f8cSSatish Balay           if (roworiented) {
240a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
241a30f8f8cSSatish Balay           } else {
242a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
243a30f8f8cSSatish Balay           }
244a30f8f8cSSatish Balay           n_loc++;
245a30f8f8cSSatish Balay         }
246b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
247a30f8f8cSSatish Balay       }
248a30f8f8cSSatish Balay     }
249a30f8f8cSSatish Balay   }
250a30f8f8cSSatish Balay   PetscFunctionReturn(0);
251a30f8f8cSSatish Balay }
252a30f8f8cSSatish Balay 
2534a2ae208SSatish Balay #undef __FUNCT__
254dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
255dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
256a30f8f8cSSatish Balay {
2570880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
258f15d580aSBarry Smith   const MatScalar *value;
259f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
260ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
261dfbe8321SBarry Smith   PetscErrorCode  ierr;
262899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
263899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
264d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2650880e062SHong Zhang 
266a30f8f8cSSatish Balay   PetscFunctionBegin;
2670880e062SHong Zhang   if(!barray) {
2680880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2690880e062SHong Zhang     baij->barray = barray;
2700880e062SHong Zhang   }
2710880e062SHong Zhang 
2720880e062SHong Zhang   if (roworiented) {
2730880e062SHong Zhang     stepval = (n-1)*bs;
2740880e062SHong Zhang   } else {
2750880e062SHong Zhang     stepval = (m-1)*bs;
2760880e062SHong Zhang   }
2770880e062SHong Zhang   for (i=0; i<m; i++) {
2780880e062SHong Zhang     if (im[i] < 0) continue;
2792515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
280e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2810880e062SHong Zhang #endif
2820880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2830880e062SHong Zhang       row = im[i] - rstart;
2840880e062SHong Zhang       for (j=0; j<n; j++) {
285f3f98c53SJed Brown         if (im[i] > in[j]) {
286f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
287e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
288f3f98c53SJed Brown         }
2890880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2900880e062SHong Zhang         if ((roworiented) && (n == 1)) {
291f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2920880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
293f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2940880e062SHong Zhang         } else { /* Here a copy is required */
2950880e062SHong Zhang           if (roworiented) {
2960880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2970880e062SHong Zhang           } else {
2980880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2990880e062SHong Zhang           }
3000880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3010880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3020880e062SHong Zhang               *barray++  = *value++;
3030880e062SHong Zhang             }
3040880e062SHong Zhang           }
3050880e062SHong Zhang           barray -=bs2;
3060880e062SHong Zhang         }
3070880e062SHong Zhang 
3080880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3090880e062SHong Zhang           col  = in[j] - cstart;
3100880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3110880e062SHong Zhang         }
3120880e062SHong Zhang         else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3330880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3390880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col =  in[j];
3410880e062SHong Zhang             }
3420880e062SHong Zhang           }
3430880e062SHong Zhang           else col = in[j];
344e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3450880e062SHong Zhang         }
3460880e062SHong Zhang       }
3470880e062SHong Zhang     } else {
3484cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3490880e062SHong Zhang       if (!baij->donotstash) {
3500880e062SHong Zhang         if (roworiented) {
3510880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3520880e062SHong Zhang         } else {
3530880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3540880e062SHong Zhang         }
3550880e062SHong Zhang       }
3560880e062SHong Zhang     }
3570880e062SHong Zhang   }
3580880e062SHong Zhang   PetscFunctionReturn(0);
359a30f8f8cSSatish Balay }
360a30f8f8cSSatish Balay 
3614a2ae208SSatish Balay #undef __FUNCT__
3624a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3631302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
364a30f8f8cSSatish Balay {
365f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3666849ba73SBarry Smith   PetscErrorCode ierr;
367d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
368d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
369a30f8f8cSSatish Balay 
370a30f8f8cSSatish Balay   PetscFunctionBegin;
371a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
372e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
373e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
374a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
375a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
376a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
377e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
378e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
379a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
380a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
381c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
382a30f8f8cSSatish Balay         } else {
383a30f8f8cSSatish Balay           if (!baij->colmap) {
384653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
385a30f8f8cSSatish Balay           }
386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
387a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
388a30f8f8cSSatish Balay           data --;
389a30f8f8cSSatish Balay #else
390a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
391a30f8f8cSSatish Balay #endif
392a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
393a30f8f8cSSatish Balay           else {
394a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
395e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
396a30f8f8cSSatish Balay           }
397a30f8f8cSSatish Balay         }
398a30f8f8cSSatish Balay       }
399a30f8f8cSSatish Balay     } else {
400e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
401a30f8f8cSSatish Balay     }
402a30f8f8cSSatish Balay   }
403a30f8f8cSSatish Balay  PetscFunctionReturn(0);
404a30f8f8cSSatish Balay }
405a30f8f8cSSatish Balay 
4064a2ae208SSatish Balay #undef __FUNCT__
4074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
408dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
409a30f8f8cSSatish Balay {
410a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
411dfbe8321SBarry Smith   PetscErrorCode ierr;
412a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
413a30f8f8cSSatish Balay 
414a30f8f8cSSatish Balay   PetscFunctionBegin;
415a30f8f8cSSatish Balay   if (baij->size == 1) {
416a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
417a30f8f8cSSatish Balay   } else {
418a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
419f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
422a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
423a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
424d9822059SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
425a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
426a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4270b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4280b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4290b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4300b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
431899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
432d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4330b8dc8d2SHong Zhang       MatScalar    *v;
4340b8dc8d2SHong Zhang 
43574ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
436d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4370b8dc8d2SHong Zhang       /* Amat */
4380b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4410b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4430b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4440b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4450b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4460b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4480b8dc8d2SHong Zhang               /* non-diagonal block */
4490b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4500b8dc8d2SHong Zhang             }
4510b8dc8d2SHong Zhang           }
4520b8dc8d2SHong Zhang         }
4530b8dc8d2SHong Zhang       }
4540b8dc8d2SHong Zhang       /* Bmat */
4550b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4560b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4570b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4580b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4590b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4600b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4610b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4620b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4630b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4640b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4650b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4660b8dc8d2SHong Zhang             }
4670b8dc8d2SHong Zhang           }
4680b8dc8d2SHong Zhang         }
4690b8dc8d2SHong Zhang       }
470d9822059SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4710b8dc8d2SHong Zhang       *norm = 0.0;
472d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4730b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4740b8dc8d2SHong Zhang       }
47574ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
476a30f8f8cSSatish Balay     } else {
477e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
478a30f8f8cSSatish Balay     }
479a30f8f8cSSatish Balay   }
480a30f8f8cSSatish Balay   PetscFunctionReturn(0);
481a30f8f8cSSatish Balay }
482a30f8f8cSSatish Balay 
4834a2ae208SSatish Balay #undef __FUNCT__
4844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
485dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
486a30f8f8cSSatish Balay {
487a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
488dfbe8321SBarry Smith   PetscErrorCode ierr;
4891302d50aSBarry Smith   PetscInt       nstash,reallocs;
490a30f8f8cSSatish Balay   InsertMode     addv;
491a30f8f8cSSatish Balay 
492a30f8f8cSSatish Balay   PetscFunctionBegin;
4934cb17eb5SBarry Smith   if (baij->donotstash || mat->nooffprocentries) {
494a30f8f8cSSatish Balay     PetscFunctionReturn(0);
495a30f8f8cSSatish Balay   }
496a30f8f8cSSatish Balay 
497a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4987adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
499e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
500a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
501a30f8f8cSSatish Balay 
502d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5031e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
504a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5051e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
506a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5071e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
508a30f8f8cSSatish Balay   PetscFunctionReturn(0);
509a30f8f8cSSatish Balay }
510a30f8f8cSSatish Balay 
5114a2ae208SSatish Balay #undef __FUNCT__
5124a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
513dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
514a30f8f8cSSatish Balay {
515a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
516a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5176849ba73SBarry Smith   PetscErrorCode ierr;
51813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
519e44c0bd4SBarry Smith   PetscInt       *row,*col;
520ace3abfcSBarry Smith   PetscBool      other_disassembled;
52113f74950SBarry Smith   PetscMPIInt    n;
522ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
523a30f8f8cSSatish Balay   MatScalar      *val;
524a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
525a30f8f8cSSatish Balay 
52691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
527a30f8f8cSSatish Balay   PetscFunctionBegin;
528a30f8f8cSSatish Balay 
5294cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
530a30f8f8cSSatish Balay     while (1) {
531a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
532a30f8f8cSSatish Balay       if (!flg) break;
533a30f8f8cSSatish Balay 
534a30f8f8cSSatish Balay       for (i=0; i<n;) {
535a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
536a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
537a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
538a30f8f8cSSatish Balay         else       ncols = n-i;
539a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
540dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
541a30f8f8cSSatish Balay         i = j;
542a30f8f8cSSatish Balay       }
543a30f8f8cSSatish Balay     }
544a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
545a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
546a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
547a30f8f8cSSatish Balay        restore the original flags */
548a30f8f8cSSatish Balay     r1 = baij->roworiented;
549a30f8f8cSSatish Balay     r2 = a->roworiented;
55091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
551a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
552a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55391c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
554a30f8f8cSSatish Balay     while (1) {
555a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
556a30f8f8cSSatish Balay       if (!flg) break;
557a30f8f8cSSatish Balay 
558a30f8f8cSSatish Balay       for (i=0; i<n;) {
559a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
560a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
561a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
562a30f8f8cSSatish Balay         else       ncols = n-i;
563dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
564a30f8f8cSSatish Balay         i = j;
565a30f8f8cSSatish Balay       }
566a30f8f8cSSatish Balay     }
567a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
568a30f8f8cSSatish Balay     baij->roworiented = r1;
569a30f8f8cSSatish Balay     a->roworiented    = r2;
57091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
577a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
578a30f8f8cSSatish Balay   /*
579a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
580a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
581a30f8f8cSSatish Balay   */
582a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5837adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
584a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
585c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
591a30f8f8cSSatish Balay   }
592cd6b891eSBarry Smith   ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
595a30f8f8cSSatish Balay 
59674ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
597a30f8f8cSSatish Balay   baij->rowvalues = 0;
5985222a1afSHong Zhang 
599a30f8f8cSSatish Balay   PetscFunctionReturn(0);
600a30f8f8cSSatish Balay }
601a30f8f8cSSatish Balay 
602dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6034a2ae208SSatish Balay #undef __FUNCT__
6044a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6056849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
606a30f8f8cSSatish Balay {
607a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
608dfbe8321SBarry Smith   PetscErrorCode    ierr;
609d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6101302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
611ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
612b0a32e0cSBarry Smith   PetscViewer       sviewer;
613f3ef73ceSBarry Smith   PetscViewerFormat format;
614a30f8f8cSSatish Balay 
615a30f8f8cSSatish Balay   PetscFunctionBegin;
6162692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
6172692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61832077d6dSBarry Smith   if (iascii) {
619b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
620456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
621a30f8f8cSSatish Balay       MatInfo info;
6227adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
623a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6247b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6257b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
627e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
629e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6317b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63207d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
633a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
634a30f8f8cSSatish Balay       PetscFunctionReturn(0);
635fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
637a30f8f8cSSatish Balay       PetscFunctionReturn(0);
638c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
639c1490034SHong Zhang       PetscFunctionReturn(0);
640a30f8f8cSSatish Balay     }
641a30f8f8cSSatish Balay   }
642a30f8f8cSSatish Balay 
643a30f8f8cSSatish Balay   if (isdraw) {
644b0a32e0cSBarry Smith     PetscDraw  draw;
645ace3abfcSBarry Smith     PetscBool  isnull;
646b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
647b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
648a30f8f8cSSatish Balay   }
649a30f8f8cSSatish Balay 
650a30f8f8cSSatish Balay   if (size == 1) {
6517adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
652a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
653a30f8f8cSSatish Balay   } else {
654a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
655a30f8f8cSSatish Balay     Mat          A;
65665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65765d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
658d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
659a30f8f8cSSatish Balay     MatScalar    *a;
660a30f8f8cSSatish Balay 
661f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6627adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
663a30f8f8cSSatish Balay     if (!rank) {
664f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     } else {
666f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     }
668f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
669d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
67052e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
671a30f8f8cSSatish Balay 
672a30f8f8cSSatish Balay     /* copy over the A part */
67365d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
674a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6751302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
676a30f8f8cSSatish Balay 
677a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
678e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
679a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
680a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
681e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
682a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
683dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
684a30f8f8cSSatish Balay           col++; a += bs;
685a30f8f8cSSatish Balay         }
686a30f8f8cSSatish Balay       }
687a30f8f8cSSatish Balay     }
688a30f8f8cSSatish Balay     /* copy over the B part */
68965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69065d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
691a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
692e9f7bc9eSHong Zhang 
693e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
694a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
695a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
696a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
697a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
698799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
699a30f8f8cSSatish Balay           col++; a += bs;
700a30f8f8cSSatish Balay         }
701a30f8f8cSSatish Balay       }
702a30f8f8cSSatish Balay     }
703a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     /*
707a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
708b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
709a30f8f8cSSatish Balay     */
710b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71165d70643SHong Zhang     if (!rank) {
7127adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7137566de4bSShri Abhyankar           /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/
7147566de4bSShri Abhyankar       PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ);
715a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
716a30f8f8cSSatish Balay     }
717b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7186bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
719a30f8f8cSSatish Balay   }
720a30f8f8cSSatish Balay   PetscFunctionReturn(0);
721a30f8f8cSSatish Balay }
722a30f8f8cSSatish Balay 
7234a2ae208SSatish Balay #undef __FUNCT__
7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
726a30f8f8cSSatish Balay {
727dfbe8321SBarry Smith   PetscErrorCode ierr;
728ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
729a30f8f8cSSatish Balay 
730a30f8f8cSSatish Balay   PetscFunctionBegin;
7312692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
7322692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7332692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
7342692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73532077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
736a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
737a30f8f8cSSatish Balay   } else {
738e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
739a30f8f8cSSatish Balay   }
740a30f8f8cSSatish Balay   PetscFunctionReturn(0);
741a30f8f8cSSatish Balay }
742a30f8f8cSSatish Balay 
7434a2ae208SSatish Balay #undef __FUNCT__
7444a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
745dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
746a30f8f8cSSatish Balay {
747a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
748dfbe8321SBarry Smith   PetscErrorCode ierr;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
751a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
752d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
753a30f8f8cSSatish Balay #endif
754a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7566bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7576bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
758a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7596bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
760a30f8f8cSSatish Balay #else
76105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #endif
76305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7646bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7656bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7666bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7676bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7686bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7725755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7756bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7766bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7776bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
778ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
77905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
780a30f8f8cSSatish Balay #endif
78159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
783899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
784bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
785901853e0SKris Buschelman 
786dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
787901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
791a30f8f8cSSatish Balay   PetscFunctionReturn(0);
792a30f8f8cSSatish Balay }
793a30f8f8cSSatish Balay 
7944a2ae208SSatish Balay #undef __FUNCT__
795547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
796547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
797547795f9SHong Zhang {
798547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
799547795f9SHong Zhang   PetscErrorCode ierr;
800547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
801547795f9SHong Zhang   PetscScalar    *x,*from;
802547795f9SHong Zhang 
803547795f9SHong Zhang   PetscFunctionBegin;
804547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
805e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
806547795f9SHong Zhang 
807547795f9SHong Zhang   /* diagonal part */
808547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
809547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
810547795f9SHong Zhang 
811547795f9SHong Zhang   /* subdiagonal part */
812547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
813547795f9SHong Zhang 
814547795f9SHong Zhang   /* copy x into the vec slvec0 */
815547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
816547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
817547795f9SHong Zhang 
818547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
819547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
820547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
821547795f9SHong Zhang 
822547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
823547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
824547795f9SHong Zhang   /* supperdiagonal part */
825547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
826547795f9SHong Zhang   PetscFunctionReturn(0);
827547795f9SHong Zhang }
828547795f9SHong Zhang 
829547795f9SHong Zhang #undef __FUNCT__
830a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
831dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
832a9d4b620SHong Zhang {
833a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
834dfbe8321SBarry Smith   PetscErrorCode ierr;
835d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
836fa22f6d0SBarry Smith   PetscScalar    *x,*from;
837a9d4b620SHong Zhang 
838a9d4b620SHong Zhang   PetscFunctionBegin;
839a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
840e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
841a9d4b620SHong Zhang 
842a9d4b620SHong Zhang   /* diagonal part */
843a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
844fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
845a9d4b620SHong Zhang 
846a9d4b620SHong Zhang   /* subdiagonal part */
847a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
848fc165ae2SBarry Smith 
849a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8501ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8511ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
852a9d4b620SHong Zhang 
853fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
854fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8551ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
856fc165ae2SBarry Smith 
857fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
858ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
859a9d4b620SHong Zhang   /* supperdiagonal part */
860a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
861a9d4b620SHong Zhang   PetscFunctionReturn(0);
862a9d4b620SHong Zhang }
863a9d4b620SHong Zhang 
864a9d4b620SHong Zhang #undef __FUNCT__
86540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
866dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
867a30f8f8cSSatish Balay {
868a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
869dfbe8321SBarry Smith   PetscErrorCode ierr;
8701302d50aSBarry Smith   PetscInt       nt;
871a30f8f8cSSatish Balay 
872a30f8f8cSSatish Balay   PetscFunctionBegin;
873a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
874e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
875e7e72b3dSBarry Smith 
876a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
877e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
87865d70643SHong Zhang 
879ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
880b941877fSHong Zhang   /* do diagonal part */
881b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
882b941877fSHong Zhang   /* do supperdiagonal part */
883ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
884b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
885b941877fSHong Zhang   /* do subdiagonal part */
886b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
887ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
888ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
88965d70643SHong Zhang 
890a30f8f8cSSatish Balay   PetscFunctionReturn(0);
891a30f8f8cSSatish Balay }
892a30f8f8cSSatish Balay 
8934a2ae208SSatish Balay #undef __FUNCT__
8944a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
895dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
896a30f8f8cSSatish Balay {
897de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
898dfbe8321SBarry Smith   PetscErrorCode ierr;
899d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
900a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
901a9d4b620SHong Zhang 
902a9d4b620SHong Zhang   PetscFunctionBegin;
903a9d4b620SHong Zhang   /*
9047adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9057adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
906a9d4b620SHong Zhang   */
907a9d4b620SHong Zhang   /* diagonal part */
908a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9092dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
910a9d4b620SHong Zhang 
911a9d4b620SHong Zhang   /* subdiagonal part */
912a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
913a9d4b620SHong Zhang 
914a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9151ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9161ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
917a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9181ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
919a9d4b620SHong Zhang 
920ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9211ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
922ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
923a9d4b620SHong Zhang 
924a9d4b620SHong Zhang   /* supperdiagonal part */
925a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
926a9d4b620SHong Zhang 
927a9d4b620SHong Zhang   PetscFunctionReturn(0);
928a9d4b620SHong Zhang }
929a9d4b620SHong Zhang 
930a9d4b620SHong Zhang #undef __FUNCT__
931a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
932dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
933a9d4b620SHong Zhang {
934a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
935dfbe8321SBarry Smith   PetscErrorCode ierr;
936a30f8f8cSSatish Balay 
937a30f8f8cSSatish Balay   PetscFunctionBegin;
938ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
939b941877fSHong Zhang   /* do diagonal part */
940b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
941b941877fSHong Zhang   /* do supperdiagonal part */
942ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
943de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
944de8b6608SHong Zhang 
945b941877fSHong Zhang   /* do subdiagonal part */
946a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
947ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
948ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
949aa482183SHong Zhang 
950a30f8f8cSSatish Balay   PetscFunctionReturn(0);
951a30f8f8cSSatish Balay }
952a30f8f8cSSatish Balay 
953a30f8f8cSSatish Balay /*
954a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
955a30f8f8cSSatish Balay    diagonal block
956a30f8f8cSSatish Balay */
9574a2ae208SSatish Balay #undef __FUNCT__
9584a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
959dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
960a30f8f8cSSatish Balay {
961a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
962dfbe8321SBarry Smith   PetscErrorCode ierr;
963a30f8f8cSSatish Balay 
964a30f8f8cSSatish Balay   PetscFunctionBegin;
965e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
966a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
967a30f8f8cSSatish Balay   PetscFunctionReturn(0);
968a30f8f8cSSatish Balay }
969a30f8f8cSSatish Balay 
9704a2ae208SSatish Balay #undef __FUNCT__
9714a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
972f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
973a30f8f8cSSatish Balay {
974a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
975dfbe8321SBarry Smith   PetscErrorCode ierr;
976a30f8f8cSSatish Balay 
977a30f8f8cSSatish Balay   PetscFunctionBegin;
978f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
979f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   PetscFunctionReturn(0);
981a30f8f8cSSatish Balay }
982a30f8f8cSSatish Balay 
9834a2ae208SSatish Balay #undef __FUNCT__
9844a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9851302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
986a30f8f8cSSatish Balay {
987d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
988d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
989d0d4cfc2SHong Zhang   PetscErrorCode ierr;
990d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
991d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
992899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
993d0d4cfc2SHong Zhang 
994a30f8f8cSSatish Balay   PetscFunctionBegin;
995e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
996d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
997d0d4cfc2SHong Zhang 
998d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
999d0d4cfc2SHong Zhang     /*
1000d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1001d0d4cfc2SHong Zhang     */
1002d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1003d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1004d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1005d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1006d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1007d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1008d0d4cfc2SHong Zhang     }
100974ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1010d0d4cfc2SHong Zhang   }
1011d0d4cfc2SHong Zhang 
1012e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1013d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1014d0d4cfc2SHong Zhang 
1015d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1016d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1017d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1018d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1019d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1020d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1021d0d4cfc2SHong Zhang 
1022d0d4cfc2SHong Zhang   cmap  = mat->garray;
1023d0d4cfc2SHong Zhang   if (v  || idx) {
1024d0d4cfc2SHong Zhang     if (nztot) {
1025d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1026d0d4cfc2SHong Zhang       PetscInt imark = -1;
1027d0d4cfc2SHong Zhang       if (v) {
1028d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1029d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1030d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1031d0d4cfc2SHong Zhang           else break;
1032d0d4cfc2SHong Zhang         }
1033d0d4cfc2SHong Zhang         imark = i;
1034d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1035d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1036d0d4cfc2SHong Zhang       }
1037d0d4cfc2SHong Zhang       if (idx) {
1038d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1039d0d4cfc2SHong Zhang         if (imark > -1) {
1040d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1041d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1042d0d4cfc2SHong Zhang           }
1043d0d4cfc2SHong Zhang         } else {
1044d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1045d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1046d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1047d0d4cfc2SHong Zhang             else break;
1048d0d4cfc2SHong Zhang           }
1049d0d4cfc2SHong Zhang           imark = i;
1050d0d4cfc2SHong Zhang         }
1051d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1052d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1053d0d4cfc2SHong Zhang       }
1054d0d4cfc2SHong Zhang     } else {
1055d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1056d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1057d0d4cfc2SHong Zhang     }
1058d0d4cfc2SHong Zhang   }
1059d0d4cfc2SHong Zhang   *nz = nztot;
1060d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1061d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1062a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1063a30f8f8cSSatish Balay }
1064a30f8f8cSSatish Balay 
10654a2ae208SSatish Balay #undef __FUNCT__
10664a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10671302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1068a30f8f8cSSatish Balay {
1069a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1070a30f8f8cSSatish Balay 
1071a30f8f8cSSatish Balay   PetscFunctionBegin;
1072e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1073a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1074a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1075a30f8f8cSSatish Balay }
1076a30f8f8cSSatish Balay 
10774a2ae208SSatish Balay #undef __FUNCT__
1078d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1079d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1080d0d4cfc2SHong Zhang {
1081d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1082d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1083d0d4cfc2SHong Zhang 
1084d0d4cfc2SHong Zhang   PetscFunctionBegin;
1085d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1086d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1087d0d4cfc2SHong Zhang }
1088d0d4cfc2SHong Zhang #undef __FUNCT__
1089d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1090d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1091d0d4cfc2SHong Zhang {
1092d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1093d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1094d0d4cfc2SHong Zhang 
1095d0d4cfc2SHong Zhang   PetscFunctionBegin;
1096d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1097d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1098d0d4cfc2SHong Zhang }
1099d0d4cfc2SHong Zhang 
1100d0d4cfc2SHong Zhang #undef __FUNCT__
110199cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110399cafbc1SBarry Smith {
110499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110599cafbc1SBarry Smith   PetscErrorCode ierr;
110699cafbc1SBarry Smith 
110799cafbc1SBarry Smith   PetscFunctionBegin;
110899cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
110999cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111099cafbc1SBarry Smith   PetscFunctionReturn(0);
111199cafbc1SBarry Smith }
111299cafbc1SBarry Smith 
111399cafbc1SBarry Smith #undef __FUNCT__
111499cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111699cafbc1SBarry Smith {
111799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111899cafbc1SBarry Smith   PetscErrorCode ierr;
111999cafbc1SBarry Smith 
112099cafbc1SBarry Smith   PetscFunctionBegin;
112199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112399cafbc1SBarry Smith   PetscFunctionReturn(0);
112499cafbc1SBarry Smith }
112599cafbc1SBarry Smith 
112699cafbc1SBarry Smith #undef __FUNCT__
11274a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1128dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1129a30f8f8cSSatish Balay {
1130a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1131dfbe8321SBarry Smith   PetscErrorCode ierr;
1132a30f8f8cSSatish Balay 
1133a30f8f8cSSatish Balay   PetscFunctionBegin;
1134a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1135a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1136a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1137a30f8f8cSSatish Balay }
1138a30f8f8cSSatish Balay 
11394a2ae208SSatish Balay #undef __FUNCT__
11404a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1141dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1142a30f8f8cSSatish Balay {
1143a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1144a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1145dfbe8321SBarry Smith   PetscErrorCode ierr;
1146a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1147a30f8f8cSSatish Balay 
1148a30f8f8cSSatish Balay   PetscFunctionBegin;
1149d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1150a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1151a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1152a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1153a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1154a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1155a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1156a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1157a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1158a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1159a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1160a30f8f8cSSatish Balay     info->memory       = isend[3];
1161a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1162a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1163d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1164a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1165a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1166a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1167a30f8f8cSSatish Balay     info->memory       = irecv[3];
1168a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1169a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1170d9822059SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1171a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1172a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1173a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1174a30f8f8cSSatish Balay     info->memory       = irecv[3];
1175a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1176a30f8f8cSSatish Balay   } else {
1177e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1178a30f8f8cSSatish Balay   }
1179a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1180a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1181a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1182a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1183a30f8f8cSSatish Balay }
1184a30f8f8cSSatish Balay 
11854a2ae208SSatish Balay #undef __FUNCT__
11864a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1187ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool  flg)
1188a30f8f8cSSatish Balay {
1189a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1190d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1191dfbe8321SBarry Smith   PetscErrorCode ierr;
1192a30f8f8cSSatish Balay 
1193a30f8f8cSSatish Balay   PetscFunctionBegin;
1194e98b92d7SKris Buschelman   switch (op) {
1195512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1196e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
119728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1198a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1199e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12004e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12014e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1202e98b92d7SKris Buschelman     break;
1203e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12044e0d8c25SBarry Smith     a->roworiented = flg;
12054e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12064e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1207e98b92d7SKris Buschelman     break;
12084e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1209290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1210e98b92d7SKris Buschelman     break;
1211e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12124e0d8c25SBarry Smith     a->donotstash = flg;
1213e98b92d7SKris Buschelman     break;
1214e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12154e0d8c25SBarry Smith     a->ht_flag = flg;
1216e98b92d7SKris Buschelman     break;
12179a4540c5SBarry Smith   case MAT_HERMITIAN:
1218e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1219eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1220547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1221eeffb40dSHong Zhang     break;
1222ffa07934SHong Zhang   case MAT_SPD:
1223ffa07934SHong Zhang     A->spd_set                         = PETSC_TRUE;
1224ffa07934SHong Zhang     A->spd                             = flg;
1225ffa07934SHong Zhang     if (flg) {
1226ffa07934SHong Zhang       A->symmetric                     = PETSC_TRUE;
1227ffa07934SHong Zhang       A->structurally_symmetric        = PETSC_TRUE;
1228ffa07934SHong Zhang       A->symmetric_set                 = PETSC_TRUE;
1229ffa07934SHong Zhang       A->structurally_symmetric_set    = PETSC_TRUE;
1230ffa07934SHong Zhang     }
1231ffa07934SHong Zhang     break;
123277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1233eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1234eeffb40dSHong Zhang     break;
123577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1236eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1237eeffb40dSHong Zhang     break;
12389a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1239e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1240290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124177e54ba9SKris Buschelman     break;
1242d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12434e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1244d0d4cfc2SHong Zhang     break;
1245d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12464e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1247d0d4cfc2SHong Zhang     break;
1248d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12494e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1250d0d4cfc2SHong Zhang     break;
1251e98b92d7SKris Buschelman   default:
1252e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1253a30f8f8cSSatish Balay   }
1254a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1255a30f8f8cSSatish Balay }
1256a30f8f8cSSatish Balay 
12574a2ae208SSatish Balay #undef __FUNCT__
12588115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1259fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1260a30f8f8cSSatish Balay {
1261dfbe8321SBarry Smith   PetscErrorCode ierr;
1262a30f8f8cSSatish Balay   PetscFunctionBegin;
1263815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1264999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1265fc4dec0aSBarry Smith   }
12668115998fSBarry Smith   PetscFunctionReturn(0);
1267a30f8f8cSSatish Balay }
1268a30f8f8cSSatish Balay 
12694a2ae208SSatish Balay #undef __FUNCT__
12704a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1271dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1272a30f8f8cSSatish Balay {
1273a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1274a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1275dfbe8321SBarry Smith   PetscErrorCode ierr;
12765e90f9d9SHong Zhang   PetscInt       nv,m,n;
1277ace3abfcSBarry Smith   PetscBool      flg;
1278a30f8f8cSSatish Balay 
1279a30f8f8cSSatish Balay   PetscFunctionBegin;
1280a30f8f8cSSatish Balay   if (ll != rr){
1281b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1282e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1283a30f8f8cSSatish Balay   }
1284b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1285b3bf805bSHong Zhang 
12865e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1287e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1288b3bf805bSHong Zhang 
12895e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1290e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12915e90f9d9SHong Zhang 
1292ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12935e90f9d9SHong Zhang 
12945e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1295a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12965e90f9d9SHong Zhang 
12975e90f9d9SHong Zhang   /* scale the diagonal part */
1298a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1299a30f8f8cSSatish Balay 
13005e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1301ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1302a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1304a30f8f8cSSatish Balay }
1305a30f8f8cSSatish Balay 
13064a2ae208SSatish Balay #undef __FUNCT__
13074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1308dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1309a30f8f8cSSatish Balay {
1310f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1311dfbe8321SBarry Smith   PetscErrorCode ierr;
1312a30f8f8cSSatish Balay 
1313a30f8f8cSSatish Balay   PetscFunctionBegin;
1314a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1315a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1316a30f8f8cSSatish Balay }
1317a30f8f8cSSatish Balay 
13186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1319a30f8f8cSSatish Balay 
13204a2ae208SSatish Balay #undef __FUNCT__
13214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1322ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1323a30f8f8cSSatish Balay {
1324a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1325a30f8f8cSSatish Balay   Mat            a,b,c,d;
1326ace3abfcSBarry Smith   PetscBool      flg;
1327dfbe8321SBarry Smith   PetscErrorCode ierr;
1328a30f8f8cSSatish Balay 
1329a30f8f8cSSatish Balay   PetscFunctionBegin;
1330a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1331a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1332a30f8f8cSSatish Balay 
1333a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1334abc0a331SBarry Smith   if (flg) {
1335a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1336a30f8f8cSSatish Balay   }
13377adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1339a30f8f8cSSatish Balay }
1340a30f8f8cSSatish Balay 
13414a2ae208SSatish Balay #undef __FUNCT__
13423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13433c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13443c896bc6SHong Zhang {
13453c896bc6SHong Zhang   PetscErrorCode ierr;
13463c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13473c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13483c896bc6SHong Zhang 
13493c896bc6SHong Zhang   PetscFunctionBegin;
13503c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13513c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1352d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13533c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1354d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13553c896bc6SHong Zhang   } else {
13563c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13573c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13583c896bc6SHong Zhang   }
13593c896bc6SHong Zhang   PetscFunctionReturn(0);
13603c896bc6SHong Zhang }
13613c896bc6SHong Zhang 
13623c896bc6SHong Zhang #undef __FUNCT__
13634a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1364dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1365273d9f13SBarry Smith {
1366dfbe8321SBarry Smith   PetscErrorCode ierr;
1367273d9f13SBarry Smith 
1368273d9f13SBarry Smith   PetscFunctionBegin;
1369db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1370273d9f13SBarry Smith   PetscFunctionReturn(0);
1371273d9f13SBarry Smith }
1372a5e6ed63SBarry Smith 
13734fe895cdSHong Zhang #undef __FUNCT__
13744fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13764fe895cdSHong Zhang {
13774fe895cdSHong Zhang   PetscErrorCode ierr;
13784fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13794fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13804fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13814fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13824fe895cdSHong Zhang 
13834fe895cdSHong Zhang   PetscFunctionBegin;
13844fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13854fe895cdSHong Zhang     PetscScalar alpha = a;
13864fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13874fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13880805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13894fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13904fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13914fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13920805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13934fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13944fe895cdSHong Zhang   } else {
1395d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13964fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1397d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13984fe895cdSHong Zhang   }
13994fe895cdSHong Zhang   PetscFunctionReturn(0);
14004fe895cdSHong Zhang }
14014fe895cdSHong Zhang 
1402a5e6ed63SBarry Smith #undef __FUNCT__
14036363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14046363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14056363de48SJed Brown {
14066363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14076363de48SJed Brown   PetscInt        rbs,cbs;
14086363de48SJed Brown   PetscErrorCode  ierr;
14096363de48SJed Brown 
14106363de48SJed Brown   PetscFunctionBegin;
14116363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14126363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14136363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14146363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1415e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1416e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14176363de48SJed Brown   PetscFunctionReturn(0);
14186363de48SJed Brown }
14196363de48SJed Brown 
14206363de48SJed Brown #undef __FUNCT__
1421a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14221302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1423a5e6ed63SBarry Smith {
14246849ba73SBarry Smith   PetscErrorCode ierr;
14251302d50aSBarry Smith   PetscInt       i;
1426ace3abfcSBarry Smith   PetscBool      flg;
1427a5e6ed63SBarry Smith 
14286849ba73SBarry Smith   PetscFunctionBegin;
1429a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1430a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1431e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1432a5e6ed63SBarry Smith   }
1433a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1434a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1435a5e6ed63SBarry Smith }
1436a5e6ed63SBarry Smith 
1437a5e6ed63SBarry Smith 
1438a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1439a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1440a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1441a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1442a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1443a9d4b620SHong Zhang        MatMult_MPISBAIJ,
144497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1445431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1446431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1447a30f8f8cSSatish Balay        0,
1448a30f8f8cSSatish Balay        0,
1449a30f8f8cSSatish Balay        0,
145097304618SKris Buschelman /*10*/ 0,
1451a30f8f8cSSatish Balay        0,
1452a30f8f8cSSatish Balay        0,
145341f059aeSBarry Smith        MatSOR_MPISBAIJ,
1454a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
145597304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1456a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1457a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1458a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1459a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1462a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1463a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1464d519adbfSMatthew Knepley /*24*/ 0,
1465a30f8f8cSSatish Balay        0,
1466a30f8f8cSSatish Balay        0,
1467a30f8f8cSSatish Balay        0,
1468a30f8f8cSSatish Balay        0,
1469d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1470b5df2d14SHong Zhang        0,
1471a30f8f8cSSatish Balay        0,
1472a30f8f8cSSatish Balay        0,
1473a30f8f8cSSatish Balay        0,
1474d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1480a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1481d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1482a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14833c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1484d519adbfSMatthew Knepley /*44*/ 0,
1485a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1486a30f8f8cSSatish Balay        0,
1487a30f8f8cSSatish Balay        0,
1488a30f8f8cSSatish Balay        0,
14896363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        0,
1492a30f8f8cSSatish Balay        0,
1493a30f8f8cSSatish Balay        0,
1494d519adbfSMatthew Knepley /*54*/ 0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1499d519adbfSMatthew Knepley /*59*/ 0,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        0,
1502357abbc8SBarry Smith        0,
150324d5174aSHong Zhang        0,
1504d519adbfSMatthew Knepley /*64*/ 0,
150524d5174aSHong Zhang        0,
150624d5174aSHong Zhang        0,
150724d5174aSHong Zhang        0,
150824d5174aSHong Zhang        0,
1509d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151024d5174aSHong Zhang        0,
151197304618SKris Buschelman        0,
151297304618SKris Buschelman        0,
151397304618SKris Buschelman        0,
1514d519adbfSMatthew Knepley /*74*/ 0,
151597304618SKris Buschelman        0,
151697304618SKris Buschelman        0,
151797304618SKris Buschelman        0,
151897304618SKris Buschelman        0,
1519d519adbfSMatthew Knepley /*79*/ 0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman        0,
152297304618SKris Buschelman        0,
15235bba2384SShri Abhyankar        MatLoad_MPISBAIJ,
1524d519adbfSMatthew Knepley /*84*/ 0,
1525865e5f61SKris Buschelman        0,
1526865e5f61SKris Buschelman        0,
1527865e5f61SKris Buschelman        0,
1528865e5f61SKris Buschelman        0,
1529d519adbfSMatthew Knepley /*89*/ 0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman        0,
1532865e5f61SKris Buschelman        0,
1533865e5f61SKris Buschelman        0,
1534d519adbfSMatthew Knepley /*94*/ 0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman        0,
153799cafbc1SBarry Smith        0,
153899cafbc1SBarry Smith        0,
1539d519adbfSMatthew Knepley /*99*/ 0,
154099cafbc1SBarry Smith        0,
154199cafbc1SBarry Smith        0,
154299cafbc1SBarry Smith        0,
154399cafbc1SBarry Smith        0,
1544d519adbfSMatthew Knepley /*104*/0,
154599cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1546d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1547d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
154895936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
154995936485SShri Abhyankar /*109*/0,
155095936485SShri Abhyankar        0,
155195936485SShri Abhyankar        0,
155295936485SShri Abhyankar        0,
155395936485SShri Abhyankar        0,
155495936485SShri Abhyankar /*114*/0,
155595936485SShri Abhyankar        0,
155695936485SShri Abhyankar        0,
155795936485SShri Abhyankar        0,
155895936485SShri Abhyankar        0,
155995936485SShri Abhyankar /*119*/0,
156095936485SShri Abhyankar        0,
156195936485SShri Abhyankar        0,
15625bba2384SShri Abhyankar        0
156399cafbc1SBarry Smith };
1564a30f8f8cSSatish Balay 
1565a30f8f8cSSatish Balay 
1566a30f8f8cSSatish Balay EXTERN_C_BEGIN
15674a2ae208SSatish Balay #undef __FUNCT__
15684a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
156911bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1570a30f8f8cSSatish Balay {
1571a30f8f8cSSatish Balay   PetscFunctionBegin;
1572a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ *)A->data)->A;
1573a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1574a30f8f8cSSatish Balay }
1575a30f8f8cSSatish Balay EXTERN_C_END
1576a30f8f8cSSatish Balay 
1577273d9f13SBarry Smith EXTERN_C_BEGIN
15784a2ae208SSatish Balay #undef __FUNCT__
1579a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
15807087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1581a23d5eceSKris Buschelman {
1582a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1583dfbe8321SBarry Smith   PetscErrorCode ierr;
1584db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1585a23d5eceSKris Buschelman 
1586a23d5eceSKris Buschelman   PetscFunctionBegin;
1587db4efbfdSBarry Smith   if (bs < 0){
15887adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1589db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15908c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1591db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1592db4efbfdSBarry Smith   }
1593e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1594db4efbfdSBarry Smith   bs = newbs;
1595a23d5eceSKris Buschelman 
1596a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1597a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1598e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1599e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1600899cda47SBarry Smith 
1601d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
160226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
160326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1604899cda47SBarry Smith 
1605a23d5eceSKris Buschelman   if (d_nnz) {
1606d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1607e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1608a23d5eceSKris Buschelman     }
1609a23d5eceSKris Buschelman   }
1610a23d5eceSKris Buschelman   if (o_nnz) {
1611d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1612e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1613a23d5eceSKris Buschelman     }
1614a23d5eceSKris Buschelman   }
1615a23d5eceSKris Buschelman 
1616a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1617d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1618d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1619d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1620e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1621a23d5eceSKris Buschelman   }
1622a23d5eceSKris Buschelman 
1623d0f46423SBarry Smith   B->rmap->bs  = bs;
1624a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1625a23d5eceSKris Buschelman   b->mbs = mbs;
1626a23d5eceSKris Buschelman   b->nbs = mbs;
1627a23d5eceSKris Buschelman   b->Mbs = Mbs;
1628a23d5eceSKris Buschelman   b->Nbs = Mbs;
1629a23d5eceSKris Buschelman 
1630a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1631d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1632a23d5eceSKris Buschelman   }
1633d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1634d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1635a23d5eceSKris Buschelman 
1636d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1637d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1638a23d5eceSKris Buschelman 
1639526dfc15SBarry Smith   if (!B->preallocated) {
1640f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1641d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16429c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
164352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1644f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1645d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16464aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164752e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
164815bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1649526dfc15SBarry Smith   }
1650a23d5eceSKris Buschelman 
1651526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1652526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1653526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1654a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1655a23d5eceSKris Buschelman }
1656a23d5eceSKris Buschelman EXTERN_C_END
1657a23d5eceSKris Buschelman 
16585c9eb25fSBarry Smith EXTERN_C_BEGIN
1659dfb205c3SBarry Smith #undef __FUNCT__
1660dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1661dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1662dfb205c3SBarry Smith {
1663dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1664dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1665dfb205c3SBarry Smith   const PetscInt *JJ=0;
1666dfb205c3SBarry Smith   PetscScalar    *values=0;
1667dfb205c3SBarry Smith   PetscErrorCode ierr;
1668dfb205c3SBarry Smith 
1669dfb205c3SBarry Smith   PetscFunctionBegin;
1670dfb205c3SBarry Smith 
1671dfb205c3SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1672dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1673dfb205c3SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1674dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1675dfb205c3SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1676dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1677dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1678dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1679dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1680dfb205c3SBarry Smith 
1681dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1682dfb205c3SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
1683dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1684dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1685dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1686dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1687dfb205c3SBarry Smith     JJ  = jj + ii[i];
1688dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1689dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1690dfb205c3SBarry Smith       JJ++;
1691dfb205c3SBarry Smith     }
1692dfb205c3SBarry Smith     d = 0;
1693dfb205c3SBarry Smith     for (; j<nz; j++) {
1694dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1695dfb205c3SBarry Smith       d++;
1696dfb205c3SBarry Smith     }
1697dfb205c3SBarry Smith     d_nnz[i] = d;
1698dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1699dfb205c3SBarry Smith   }
1700dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1701dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1702dfb205c3SBarry Smith 
1703dfb205c3SBarry Smith   values = (PetscScalar*)V;
1704dfb205c3SBarry Smith   if (!values) {
1705dfb205c3SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1706dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1707dfb205c3SBarry Smith   }
1708dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1709dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1710dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1711dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1712dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1713dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1714dfb205c3SBarry Smith   }
1715dfb205c3SBarry Smith 
1716dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1717dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1718dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1719dfb205c3SBarry Smith 
1720dfb205c3SBarry Smith   PetscFunctionReturn(0);
1721dfb205c3SBarry Smith }
1722dfb205c3SBarry Smith EXTERN_C_END
1723dfb205c3SBarry Smith 
1724dfb205c3SBarry Smith EXTERN_C_BEGIN
1725611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
17267087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1727611f576cSBarry Smith #endif
1728611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
17297087cfbeSBarry Smith extern PetscErrorCode  MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1730611f576cSBarry Smith #endif
1731b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1732b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1733b5e56a35SBarry Smith #endif
17345c9eb25fSBarry Smith EXTERN_C_END
17355c9eb25fSBarry Smith 
17360bad9183SKris Buschelman /*MC
1737fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1738*828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1739*828413b8SBarry Smith    the matrix is stored.
1740*828413b8SBarry Smith 
1741*828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1742*828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
17430bad9183SKris Buschelman 
17440bad9183SKris Buschelman    Options Database Keys:
17450bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
17460bad9183SKris Buschelman 
17470bad9183SKris Buschelman   Level: beginner
17480bad9183SKris Buschelman 
17490bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
17500bad9183SKris Buschelman M*/
17510bad9183SKris Buschelman 
1752a23d5eceSKris Buschelman EXTERN_C_BEGIN
1753a23d5eceSKris Buschelman #undef __FUNCT__
17544a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
17557087cfbeSBarry Smith PetscErrorCode  MatCreate_MPISBAIJ(Mat B)
1756b5df2d14SHong Zhang {
1757b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1758dfbe8321SBarry Smith   PetscErrorCode ierr;
1759ace3abfcSBarry Smith   PetscBool      flg;
1760b5df2d14SHong Zhang 
1761b5df2d14SHong Zhang   PetscFunctionBegin;
1762b5df2d14SHong Zhang 
176338f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1764b0a32e0cSBarry Smith   B->data = (void*)b;
1765b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1766b5df2d14SHong Zhang 
1767b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1768b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1769b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1770b5df2d14SHong Zhang 
1771b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
17727adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17737adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1774b5df2d14SHong Zhang 
1775b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1776899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1777b5df2d14SHong Zhang 
1778b5df2d14SHong Zhang   /* build cache for off array entries formed */
17797adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1780b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1781b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1782b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1783b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1784b5df2d14SHong Zhang 
1785b5df2d14SHong Zhang   /* stuff used in block assembly */
1786b5df2d14SHong Zhang   b->barray       = 0;
1787b5df2d14SHong Zhang 
1788b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1789b5df2d14SHong Zhang   b->lvec         = 0;
1790b5df2d14SHong Zhang   b->Mvctx        = 0;
179140781036SHong Zhang   b->slvec0       = 0;
179240781036SHong Zhang   b->slvec0b      = 0;
179340781036SHong Zhang   b->slvec1       = 0;
179440781036SHong Zhang   b->slvec1a      = 0;
179540781036SHong Zhang   b->slvec1b      = 0;
179640781036SHong Zhang   b->sMvctx       = 0;
1797b5df2d14SHong Zhang 
1798b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1799b5df2d14SHong Zhang   b->rowindices   = 0;
1800b5df2d14SHong Zhang   b->rowvalues    = 0;
1801b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1802b5df2d14SHong Zhang 
1803b5df2d14SHong Zhang   /* hash table stuff */
1804b5df2d14SHong Zhang   b->ht           = 0;
1805b5df2d14SHong Zhang   b->hd           = 0;
1806b5df2d14SHong Zhang   b->ht_size      = 0;
1807b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1808b5df2d14SHong Zhang   b->ht_fact      = 0;
1809b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1810b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1811b5df2d14SHong Zhang 
18127a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18137a868f3eSHong Zhang   b->ijonly       = PETSC_FALSE;
18147a868f3eSHong Zhang 
181559ffdab8SBarry Smith   b->in_loc       = 0;
181659ffdab8SBarry Smith   b->v_loc        = 0;
181759ffdab8SBarry Smith   b->n_loc        = 0;
18187adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
1819acfcf0e5SJed Brown     ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1820b5df2d14SHong Zhang     if (flg) {
1821f6275e2eSBarry Smith       PetscReal fact = 1.39;
18224e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
18238c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1824b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1825b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
18261e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1827b5df2d14SHong Zhang     }
18288c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
18298c07d4e3SBarry Smith 
1830b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1831ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1832b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1833b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1834b5e56a35SBarry Smith #endif
1835611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1836ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1837bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1838bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1839611f576cSBarry Smith #endif
1840611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1841ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
18425c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
18435c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1844611f576cSBarry Smith #endif
1845b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1846b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1847b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1848b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1849b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1850b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1851b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1852b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1853b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1854a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1855a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1856a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1857dfb205c3SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",
1858dfb205c3SBarry Smith                                      "MatMPISBAIJSetPreallocationCSR_MPISBAIJ",
1859dfb205c3SBarry Smith                                      MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
186023ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
186123ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
186223ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
186323ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
186417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1865b5df2d14SHong Zhang   PetscFunctionReturn(0);
1866b5df2d14SHong Zhang }
1867273d9f13SBarry Smith EXTERN_C_END
1868b5df2d14SHong Zhang 
1869209238afSKris Buschelman /*MC
1870002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1871209238afSKris Buschelman 
1872209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1873209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1874209238afSKris Buschelman 
1875209238afSKris Buschelman    Options Database Keys:
1876209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1877209238afSKris Buschelman 
1878209238afSKris Buschelman   Level: beginner
1879209238afSKris Buschelman 
1880209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1881209238afSKris Buschelman M*/
1882209238afSKris Buschelman 
1883209238afSKris Buschelman EXTERN_C_BEGIN
1884209238afSKris Buschelman #undef __FUNCT__
1885209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
18867087cfbeSBarry Smith PetscErrorCode  MatCreate_SBAIJ(Mat A)
1887dfbe8321SBarry Smith {
18886849ba73SBarry Smith   PetscErrorCode ierr;
18891302d50aSBarry Smith   PetscMPIInt    size;
1890209238afSKris Buschelman 
1891209238afSKris Buschelman   PetscFunctionBegin;
18927adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1893209238afSKris Buschelman   if (size == 1) {
1894209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1895209238afSKris Buschelman   } else {
1896209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1897209238afSKris Buschelman   }
1898209238afSKris Buschelman   PetscFunctionReturn(0);
1899209238afSKris Buschelman }
1900209238afSKris Buschelman EXTERN_C_END
1901209238afSKris Buschelman 
19024a2ae208SSatish Balay #undef __FUNCT__
19034a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1904b5df2d14SHong Zhang /*@C
1905b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1906b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1907b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1908b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1909b5df2d14SHong Zhang 
1910b5df2d14SHong Zhang    Collective on Mat
1911b5df2d14SHong Zhang 
1912b5df2d14SHong Zhang    Input Parameters:
1913b5df2d14SHong Zhang +  A - the matrix
1914b5df2d14SHong Zhang .  bs   - size of blockk
1915b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1916b5df2d14SHong Zhang            submatrix  (same for all local rows)
1917b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19186d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
19196d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
19206d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1921b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1922b5df2d14SHong Zhang            submatrix (same for all local rows).
1923b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1924b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1925b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1926b5df2d14SHong Zhang 
1927b5df2d14SHong Zhang 
1928b5df2d14SHong Zhang    Options Database Keys:
1929b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1930b5df2d14SHong Zhang                      block calculations (much slower)
1931b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1932b5df2d14SHong Zhang 
1933b5df2d14SHong Zhang    Notes:
1934b5df2d14SHong Zhang 
1935b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1936b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1937b5df2d14SHong Zhang 
193849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
193949a6f317SBarry Smith 
1940b5df2d14SHong Zhang    Storage Information:
1941b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1942b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1943b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1944b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1945b5df2d14SHong Zhang 
1946b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1947b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1948b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1949b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1950b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1951b5df2d14SHong Zhang 
1952aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1953aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1954aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1955aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1956aa95bbe8SBarry Smith 
1957b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1958b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1959b5df2d14SHong Zhang 
1960b5df2d14SHong Zhang .vb
1961b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1962b5df2d14SHong Zhang           -------------------
1963b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1964b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1965b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1966b5df2d14SHong Zhang           -------------------
1967b5df2d14SHong Zhang .ve
1968b5df2d14SHong Zhang 
1969b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1970b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19716d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19726d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1973b5df2d14SHong Zhang 
19746d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19756d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1976bf831d64SJed Brown    and o_nz should indicate the number of block nonzeros per row in the upper triangular
1977bf831d64SJed Brown    part of the o matrix.
1978b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1979b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1980b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1981b5df2d14SHong Zhang    matrices.
1982b5df2d14SHong Zhang 
1983b5df2d14SHong Zhang    Level: intermediate
1984b5df2d14SHong Zhang 
1985b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1986b5df2d14SHong Zhang 
1987b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1988b5df2d14SHong Zhang @*/
19897087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1990b5df2d14SHong Zhang {
19914ac538c5SBarry Smith   PetscErrorCode ierr;
1992b5df2d14SHong Zhang 
1993b5df2d14SHong Zhang   PetscFunctionBegin;
19944ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1995b5df2d14SHong Zhang   PetscFunctionReturn(0);
1996b5df2d14SHong Zhang }
1997b5df2d14SHong Zhang 
19984a2ae208SSatish Balay #undef __FUNCT__
19994a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
2000a30f8f8cSSatish Balay /*@C
2001a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2002a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2003a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2004a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2005a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2006a30f8f8cSSatish Balay 
2007a30f8f8cSSatish Balay    Collective on MPI_Comm
2008a30f8f8cSSatish Balay 
2009a30f8f8cSSatish Balay    Input Parameters:
2010a30f8f8cSSatish Balay +  comm - MPI communicator
2011a30f8f8cSSatish Balay .  bs   - size of blockk
2012a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2013a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2014a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2015a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2016a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2017a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2018a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2019a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2020a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2021a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2022a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20236d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20246d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
20256d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
2026a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2027a30f8f8cSSatish Balay            submatrix (same for all local rows).
2028a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2029a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
2030a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
2031a30f8f8cSSatish Balay 
2032a30f8f8cSSatish Balay    Output Parameter:
2033a30f8f8cSSatish Balay .  A - the matrix
2034a30f8f8cSSatish Balay 
2035a30f8f8cSSatish Balay    Options Database Keys:
2036a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2037a30f8f8cSSatish Balay                      block calculations (much slower)
2038a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2039a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2040a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2041a30f8f8cSSatish Balay 
2042175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2043ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2044175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2045175b88e8SBarry Smith 
2046a30f8f8cSSatish Balay    Notes:
2047d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20486d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2049d1be2dadSMatthew Knepley 
2050a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2051a30f8f8cSSatish Balay    (possibly both).
2052a30f8f8cSSatish Balay 
2053a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2054a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2055a30f8f8cSSatish Balay 
205649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
205749a6f317SBarry Smith 
2058a30f8f8cSSatish Balay    Storage Information:
2059a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2060a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2061a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2062a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2063a30f8f8cSSatish Balay 
2064a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2065a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
2066a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2067a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2068a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2069a30f8f8cSSatish Balay 
2070a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2071a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2072a30f8f8cSSatish Balay 
2073a30f8f8cSSatish Balay .vb
2074a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2075a30f8f8cSSatish Balay           -------------------
2076a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2077a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2078a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2079a30f8f8cSSatish Balay           -------------------
2080a30f8f8cSSatish Balay .ve
2081a30f8f8cSSatish Balay 
2082a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2083a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20846d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20856d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2086a30f8f8cSSatish Balay 
20876d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20886d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2089a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2090a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2091a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2092a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2093a30f8f8cSSatish Balay    matrices.
2094a30f8f8cSSatish Balay 
2095a30f8f8cSSatish Balay    Level: intermediate
2096a30f8f8cSSatish Balay 
2097a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2098a30f8f8cSSatish Balay 
2099a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2100a30f8f8cSSatish Balay @*/
2101a30f8f8cSSatish Balay 
21027087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2103a30f8f8cSSatish Balay {
21046849ba73SBarry Smith   PetscErrorCode ierr;
21051302d50aSBarry Smith   PetscMPIInt    size;
2106a30f8f8cSSatish Balay 
2107a30f8f8cSSatish Balay   PetscFunctionBegin;
2108f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2109f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2110273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2111273d9f13SBarry Smith   if (size > 1) {
2112b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2113b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2114273d9f13SBarry Smith   } else {
2115273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2116273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2117273d9f13SBarry Smith   }
2118a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2119a30f8f8cSSatish Balay }
2120a30f8f8cSSatish Balay 
2121a30f8f8cSSatish Balay 
21224a2ae208SSatish Balay #undef __FUNCT__
21234a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21246849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2125a30f8f8cSSatish Balay {
2126a30f8f8cSSatish Balay   Mat            mat;
2127a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2128dfbe8321SBarry Smith   PetscErrorCode ierr;
2129d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2130387bc808SHong Zhang   PetscScalar    *array;
2131a30f8f8cSSatish Balay 
2132a30f8f8cSSatish Balay   PetscFunctionBegin;
2133a30f8f8cSSatish Balay   *newmat       = 0;
21347adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2135d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21367adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21371d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
213826283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
213926283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2140e1b6402fSHong Zhang 
2141d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2142273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
214382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21447fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21457fff6886SHong Zhang 
2146b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2147a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2148a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2149a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2150a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2151a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2152a30f8f8cSSatish Balay 
2153899cda47SBarry Smith 
2154a30f8f8cSSatish Balay   a->size         = oldmat->size;
2155a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2156a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2157a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2158a30f8f8cSSatish Balay   a->rowindices   = 0;
2159a30f8f8cSSatish Balay   a->rowvalues    = 0;
2160a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2161a30f8f8cSSatish Balay   a->barray       = 0;
2162899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2163899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2164899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2165899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2166a30f8f8cSSatish Balay 
2167a30f8f8cSSatish Balay   /* hash table stuff */
2168a30f8f8cSSatish Balay   a->ht           = 0;
2169a30f8f8cSSatish Balay   a->hd           = 0;
2170a30f8f8cSSatish Balay   a->ht_size      = 0;
2171a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2172a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2173a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2174a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2175a30f8f8cSSatish Balay 
2176899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2177a30f8f8cSSatish Balay   if (oldmat->colmap) {
2178a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2179a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay #else
21811302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
218252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21831302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2184a30f8f8cSSatish Balay #endif
2185a30f8f8cSSatish Balay   } else a->colmap = 0;
2186387bc808SHong Zhang 
2187a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21881302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
218952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21901302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2191a30f8f8cSSatish Balay   } else a->garray = 0;
2192a30f8f8cSSatish Balay 
2193533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
219552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2196a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
219752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
219882327fa8SHong Zhang 
219982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
220052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
220182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
220252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2203387bc808SHong Zhang 
2204387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
22051ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2206387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2207387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22081ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22091ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2210387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22111ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
221252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
221352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
221452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
221552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
221652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2217387bc808SHong Zhang 
2218387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2219387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2220387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
222152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
222282327fa8SHong Zhang 
2223a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
222452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
222652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
22277adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   *newmat = mat;
2229a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2230a30f8f8cSSatish Balay }
2231a30f8f8cSSatish Balay 
22324a2ae208SSatish Balay #undef __FUNCT__
22335bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2234112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
223595936485SShri Abhyankar {
223695936485SShri Abhyankar   PetscErrorCode ierr;
223795936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
223895936485SShri Abhyankar   PetscScalar    *vals,*buf;
223995936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
224095936485SShri Abhyankar   MPI_Status     status;
224195936485SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
224295936485SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
224395936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
224495936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
224595936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
224695936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
224795936485SShri Abhyankar   int            fd;
224895936485SShri Abhyankar 
224995936485SShri Abhyankar   PetscFunctionBegin;
225095936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
225195936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
225295936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
225395936485SShri Abhyankar 
225495936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
225595936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
225695936485SShri Abhyankar   if (!rank) {
225795936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
225895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
225995936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
226095936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
226195936485SShri Abhyankar   }
226295936485SShri Abhyankar 
226395936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
226495936485SShri Abhyankar 
226595936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
226695936485SShri Abhyankar   M = header[1]; N = header[2];
226795936485SShri Abhyankar 
226895936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
226995936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
227095936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
227195936485SShri Abhyankar 
227295936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
227395936485SShri Abhyankar   if (sizesset) {
227495936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
227595936485SShri Abhyankar   }
2276abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2277abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
227895936485SShri Abhyankar 
227995936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
228095936485SShri Abhyankar 
228195936485SShri Abhyankar   /*
228295936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
228395936485SShri Abhyankar      divisible by the blocksize
228495936485SShri Abhyankar   */
228595936485SShri Abhyankar   Mbs        = M/bs;
228695936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
228795936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
228895936485SShri Abhyankar   else                  Mbs++;
228995936485SShri Abhyankar   if (extra_rows &&!rank) {
229095936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
229195936485SShri Abhyankar   }
229295936485SShri Abhyankar 
229395936485SShri Abhyankar   /* determine ownership of all rows */
229495936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
229595936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
229695936485SShri Abhyankar     m          = mbs*bs;
229795936485SShri Abhyankar   } else { /* User Set */
229895936485SShri Abhyankar     m          = newmat->rmap->n;
229995936485SShri Abhyankar     mbs        = m/bs;
230095936485SShri Abhyankar   }
230195936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
230295936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
230395936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
230495936485SShri Abhyankar   rowners[0] = 0;
230595936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
230695936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
230795936485SShri Abhyankar   rstart = rowners[rank];
230895936485SShri Abhyankar   rend   = rowners[rank+1];
230995936485SShri Abhyankar 
231095936485SShri Abhyankar   /* distribute row lengths to all processors */
231195936485SShri Abhyankar   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
231295936485SShri Abhyankar   if (!rank) {
231395936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
231495936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
231595936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
231695936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
231795936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
231895936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
231995936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
232095936485SShri Abhyankar   } else {
232195936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
232295936485SShri Abhyankar   }
232395936485SShri Abhyankar 
232495936485SShri Abhyankar   if (!rank) {   /* procs[0] */
232595936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
232695936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
232795936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
232895936485SShri Abhyankar     for (i=0; i<size; i++) {
232995936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
233095936485SShri Abhyankar         procsnz[i] += rowlengths[j];
233195936485SShri Abhyankar       }
233295936485SShri Abhyankar     }
233395936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
233495936485SShri Abhyankar 
233595936485SShri Abhyankar     /* determine max buffer needed and allocate it */
233695936485SShri Abhyankar     maxnz = 0;
233795936485SShri Abhyankar     for (i=0; i<size; i++) {
233895936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
233995936485SShri Abhyankar     }
234095936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
234195936485SShri Abhyankar 
234295936485SShri Abhyankar     /* read in my part of the matrix column indices  */
234395936485SShri Abhyankar     nz     = procsnz[0];
234495936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
234595936485SShri Abhyankar     mycols = ibuf;
234695936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
234795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
234895936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
234995936485SShri Abhyankar 
235095936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
235195936485SShri Abhyankar     for (i=1; i<size-1; i++) {
235295936485SShri Abhyankar       nz   = procsnz[i];
235395936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
235495936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
235595936485SShri Abhyankar     }
235695936485SShri Abhyankar     /* read in the stuff for the last proc */
235795936485SShri Abhyankar     if (size != 1) {
235895936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
235995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
236095936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
236195936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
236295936485SShri Abhyankar     }
236395936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
236495936485SShri Abhyankar   } else {  /* procs[i], i>0 */
236595936485SShri Abhyankar     /* determine buffer space needed for message */
236695936485SShri Abhyankar     nz = 0;
236795936485SShri Abhyankar     for (i=0; i<m; i++) {
236895936485SShri Abhyankar       nz += locrowlens[i];
236995936485SShri Abhyankar     }
237095936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
237195936485SShri Abhyankar     mycols = ibuf;
237295936485SShri Abhyankar     /* receive message of column indices*/
237395936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
237495936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
237595936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
237695936485SShri Abhyankar   }
237795936485SShri Abhyankar 
237895936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
237995936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
238095936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
238195936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
238295936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
238395936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
238495936485SShri Abhyankar   rowcount = 0;
238595936485SShri Abhyankar   nzcount  = 0;
238695936485SShri Abhyankar   for (i=0; i<mbs; i++) {
238795936485SShri Abhyankar     dcount  = 0;
238895936485SShri Abhyankar     odcount = 0;
238995936485SShri Abhyankar     for (j=0; j<bs; j++) {
239095936485SShri Abhyankar       kmax = locrowlens[rowcount];
239195936485SShri Abhyankar       for (k=0; k<kmax; k++) {
239295936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
239395936485SShri Abhyankar         if (!mask[tmp]) {
239495936485SShri Abhyankar           mask[tmp] = 1;
239595936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
239695936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
239795936485SShri Abhyankar         }
239895936485SShri Abhyankar       }
239995936485SShri Abhyankar       rowcount++;
240095936485SShri Abhyankar     }
240195936485SShri Abhyankar 
240295936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
240395936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
240495936485SShri Abhyankar 
240595936485SShri Abhyankar     /* zero out the mask elements we set */
240695936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
240795936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
240895936485SShri Abhyankar   }
240995936485SShri Abhyankar     if (!sizesset) {
241095936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
241195936485SShri Abhyankar   }
241295936485SShri Abhyankar   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
241395936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
241495936485SShri Abhyankar 
241595936485SShri Abhyankar   if (!rank) {
241695936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
241795936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
241895936485SShri Abhyankar     nz = procsnz[0];
241995936485SShri Abhyankar     vals = buf;
242095936485SShri Abhyankar     mycols = ibuf;
242195936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
242295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
242395936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
242495936485SShri Abhyankar 
242595936485SShri Abhyankar     /* insert into matrix */
242695936485SShri Abhyankar     jj      = rstart*bs;
242795936485SShri Abhyankar     for (i=0; i<m; i++) {
242895936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
242995936485SShri Abhyankar       mycols += locrowlens[i];
243095936485SShri Abhyankar       vals   += locrowlens[i];
243195936485SShri Abhyankar       jj++;
243295936485SShri Abhyankar     }
243395936485SShri Abhyankar 
243495936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
243595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
243695936485SShri Abhyankar       nz   = procsnz[i];
243795936485SShri Abhyankar       vals = buf;
243895936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
243995936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
244095936485SShri Abhyankar     }
244195936485SShri Abhyankar     /* the last proc */
244295936485SShri Abhyankar     if (size != 1){
244395936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
244495936485SShri Abhyankar       vals = buf;
244595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
244695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
244795936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
244895936485SShri Abhyankar     }
244995936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
245095936485SShri Abhyankar 
245195936485SShri Abhyankar   } else {
245295936485SShri Abhyankar     /* receive numeric values */
245395936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
245495936485SShri Abhyankar 
245595936485SShri Abhyankar     /* receive message of values*/
245695936485SShri Abhyankar     vals   = buf;
245795936485SShri Abhyankar     mycols = ibuf;
245895936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
245995936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
246095936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
246195936485SShri Abhyankar 
246295936485SShri Abhyankar     /* insert into matrix */
246395936485SShri Abhyankar     jj      = rstart*bs;
246495936485SShri Abhyankar     for (i=0; i<m; i++) {
246595936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
246695936485SShri Abhyankar       mycols += locrowlens[i];
246795936485SShri Abhyankar       vals   += locrowlens[i];
246895936485SShri Abhyankar       jj++;
246995936485SShri Abhyankar     }
247095936485SShri Abhyankar   }
247195936485SShri Abhyankar 
247295936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
247395936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
247495936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
247595936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
247695936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
247795936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
247895936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
247995936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
248095936485SShri Abhyankar   PetscFunctionReturn(0);
248195936485SShri Abhyankar }
248295936485SShri Abhyankar 
248395936485SShri Abhyankar #undef __FUNCT__
24844a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2485dcf5cc72SBarry Smith /*XXXXX@
2486a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2487a30f8f8cSSatish Balay 
2488a30f8f8cSSatish Balay    Input Parameters:
2489a30f8f8cSSatish Balay .  mat  - the matrix
2490a30f8f8cSSatish Balay .  fact - factor
2491a30f8f8cSSatish Balay 
2492c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2493a30f8f8cSSatish Balay 
2494a30f8f8cSSatish Balay    Level: advanced
2495a30f8f8cSSatish Balay 
2496a30f8f8cSSatish Balay   Notes:
2497a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2498a30f8f8cSSatish Balay 
2499a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2500a30f8f8cSSatish Balay 
2501a30f8f8cSSatish Balay .seealso: MatSetOption()
2502dcf5cc72SBarry Smith @XXXXX*/
2503dcf5cc72SBarry Smith 
250424d5174aSHong Zhang 
25054a2ae208SSatish Balay #undef __FUNCT__
2506985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2507985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
250824d5174aSHong Zhang {
250924d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2510f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2511ca54ac64SHong Zhang   PetscReal      atmp;
251287828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2513dfbe8321SBarry Smith   PetscErrorCode ierr;
25141302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25151302d50aSBarry Smith   PetscMPIInt    rank,size;
25161302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
251787828ca2SBarry Smith   PetscScalar    *va;
25188a1c53f2SBarry Smith   MatScalar      *ba;
2519f4c0e9e4SHong Zhang   MPI_Status     stat;
252024d5174aSHong Zhang 
252124d5174aSHong Zhang   PetscFunctionBegin;
2522e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2523985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
25241ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2525f4c0e9e4SHong Zhang 
25267adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
25277adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2528f4c0e9e4SHong Zhang 
2529d0f46423SBarry Smith   bs   = A->rmap->bs;
2530f4c0e9e4SHong Zhang   mbs  = a->mbs;
2531f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2532f4c0e9e4SHong Zhang   ba   = b->a;
2533f4c0e9e4SHong Zhang   bi   = b->i;
2534f4c0e9e4SHong Zhang   bj   = b->j;
2535f4c0e9e4SHong Zhang 
2536f4c0e9e4SHong Zhang   /* find ownerships */
2537d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2538f4c0e9e4SHong Zhang 
2539f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
254082502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2541ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2542f4c0e9e4SHong Zhang 
2543f4c0e9e4SHong Zhang   /* row_max for B */
2544b8475685SHong Zhang   if (rank != size-1){
2545f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2546f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2547f4c0e9e4SHong Zhang       brow  = bs*i;
2548f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2549f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2550f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2551ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
255204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2553f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2554f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2555ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2556ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2557f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2558f4c0e9e4SHong Zhang           }
2559f4c0e9e4SHong Zhang         }
2560f4c0e9e4SHong Zhang         bj++;
2561f4c0e9e4SHong Zhang       }
2562f4c0e9e4SHong Zhang     }
2563f4c0e9e4SHong Zhang 
2564f4c0e9e4SHong Zhang     /* send values to its owners */
2565f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2566f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2567ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
25687adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2569ca54ac64SHong Zhang     }
2570f4c0e9e4SHong Zhang   }
2571f4c0e9e4SHong Zhang 
2572f4c0e9e4SHong Zhang   /* receive values */
2573ca54ac64SHong Zhang   if (rank){
2574f4c0e9e4SHong Zhang     rvalues = work;
2575ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2576f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
25777adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2578f4c0e9e4SHong Zhang       /* process values */
2579f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2580ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2581f4c0e9e4SHong Zhang       }
2582f4c0e9e4SHong Zhang     }
2583ca54ac64SHong Zhang   }
2584f4c0e9e4SHong Zhang 
25851ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2586ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
258724d5174aSHong Zhang   PetscFunctionReturn(0);
258824d5174aSHong Zhang }
25892798e883SHong Zhang 
25902798e883SHong Zhang #undef __FUNCT__
259141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
259241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25932798e883SHong Zhang {
25942798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2595dfbe8321SBarry Smith   PetscErrorCode    ierr;
2596d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
25973649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2598ffe4fb16SHong Zhang   Vec               bb1;
25993649974fSBarry Smith   const PetscScalar *b;
2600ffe4fb16SHong Zhang 
2601ffe4fb16SHong Zhang   PetscFunctionBegin;
2602e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2603e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2604ffe4fb16SHong Zhang 
2605a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
260641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2607a2b30743SBarry Smith     PetscFunctionReturn(0);
2608a2b30743SBarry Smith   }
2609a2b30743SBarry Smith 
2610ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2611ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
261241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2613ffe4fb16SHong Zhang       its--;
2614ffe4fb16SHong Zhang     }
2615ffe4fb16SHong Zhang 
2616ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2617ffe4fb16SHong Zhang     while (its--){
2618ffe4fb16SHong Zhang 
2619ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2620ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2621ffe4fb16SHong Zhang 
2622ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26231ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26241ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2625ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26261ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2627ffe4fb16SHong Zhang 
2628efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2629ffe4fb16SHong Zhang 
2630ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26311ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26323649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2633ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26341ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2635ffe4fb16SHong Zhang 
2636ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2637fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2638ffe4fb16SHong Zhang 
2639ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26401ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2641a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2642ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2643ffe4fb16SHong Zhang 
2644ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2645ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2646ffe4fb16SHong Zhang 
2647ffe4fb16SHong Zhang       /* local diagonal sweep */
264841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2649ffe4fb16SHong Zhang     }
26506bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2651fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
265241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2653fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
265441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2655fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2656fa22f6d0SBarry Smith     Vec               xx1;
2657ace3abfcSBarry Smith     PetscBool         hasop;
265820f1ed55SBarry Smith     const PetscScalar *diag;
2659887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
266020f1ed55SBarry Smith     PetscInt          i,n;
2661fa22f6d0SBarry Smith 
2662fa22f6d0SBarry Smith     if (!mat->xx1) {
2663fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2664fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2665fa22f6d0SBarry Smith     }
2666fa22f6d0SBarry Smith     xx1 = mat->xx1;
2667fa22f6d0SBarry Smith     bb1 = mat->bb1;
2668fa22f6d0SBarry Smith 
266941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2670fa22f6d0SBarry Smith 
2671fa22f6d0SBarry Smith     if (!mat->diag) {
2672effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2673fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2674fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2675fa22f6d0SBarry Smith     }
2676fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2677fa22f6d0SBarry Smith 
2678fa22f6d0SBarry Smith     if (hasop) {
2679fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2680887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
268120f1ed55SBarry Smith     } else {
268220f1ed55SBarry Smith       /*
268320f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
268420f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2685887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
268620f1ed55SBarry Smith       */
268720f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
26883649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
26893649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
269020f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
269120f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2692887ee2caSBarry Smith       if (omega == 1.0) {
269320f1ed55SBarry Smith 	for (i=0; i<n; i++) {
269420f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
269520f1ed55SBarry Smith 	}
269620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2697887ee2caSBarry Smith       } else {
2698887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2699887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2700887ee2caSBarry Smith 	}
2701887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2702887ee2caSBarry Smith       }
270320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27043649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27053649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
270620f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
270720f1ed55SBarry Smith     }
2708fa22f6d0SBarry Smith 
2709fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2710fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2711fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2712fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2713fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2714fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2715fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2716fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2717fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2718fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2719effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2720fa22f6d0SBarry Smith 
2721fa22f6d0SBarry Smith     /* local sweep */
272241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2723fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2724ffe4fb16SHong Zhang   } else {
2725e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2726ffe4fb16SHong Zhang   }
2727ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2728ffe4fb16SHong Zhang }
2729ffe4fb16SHong Zhang 
2730ffe4fb16SHong Zhang #undef __FUNCT__
273141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
273241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2733ffe4fb16SHong Zhang {
2734ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2735dfbe8321SBarry Smith   PetscErrorCode ierr;
27362798e883SHong Zhang   Vec            lvec1,bb1;
27372798e883SHong Zhang 
27382798e883SHong Zhang   PetscFunctionBegin;
2739e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2740e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27412798e883SHong Zhang 
2742c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
27432798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
274441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27452798e883SHong Zhang       its--;
27462798e883SHong Zhang     }
27472798e883SHong Zhang 
27482798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27492798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27502798e883SHong Zhang     while (its--){
2751ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27522798e883SHong Zhang 
27532798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27542798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2755efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27562798e883SHong Zhang 
2757ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27582798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2759ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27602798e883SHong Zhang 
27612798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2762efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27632798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27642798e883SHong Zhang 
2765ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27662798e883SHong Zhang 
2767c14dc6b6SHong Zhang       /* diagonal sweep */
276841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
27692798e883SHong Zhang     }
27706bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
27716bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
27726bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
27732798e883SHong Zhang   PetscFunctionReturn(0);
27742798e883SHong Zhang }
27752798e883SHong Zhang 
2776dfb205c3SBarry Smith #undef __FUNCT__
2777dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2778dfb205c3SBarry Smith /*@
2779dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2780dfb205c3SBarry Smith          CSR format the local rows.
2781dfb205c3SBarry Smith 
2782dfb205c3SBarry Smith    Collective on MPI_Comm
2783dfb205c3SBarry Smith 
2784dfb205c3SBarry Smith    Input Parameters:
2785dfb205c3SBarry Smith +  comm - MPI communicator
2786dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2787dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2788dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2789dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2790dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2791dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2792dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2793dfb205c3SBarry Smith .   i - row indices
2794dfb205c3SBarry Smith .   j - column indices
2795dfb205c3SBarry Smith -   a - matrix values
2796dfb205c3SBarry Smith 
2797dfb205c3SBarry Smith    Output Parameter:
2798dfb205c3SBarry Smith .   mat - the matrix
2799dfb205c3SBarry Smith 
2800dfb205c3SBarry Smith    Level: intermediate
2801dfb205c3SBarry Smith 
2802dfb205c3SBarry Smith    Notes:
2803dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2804dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2805dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2806dfb205c3SBarry Smith 
2807dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2808dfb205c3SBarry Smith 
2809dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2810dfb205c3SBarry Smith 
2811dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
2812dfb205c3SBarry Smith           MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays()
2813dfb205c3SBarry Smith @*/
28147087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2815dfb205c3SBarry Smith {
2816dfb205c3SBarry Smith   PetscErrorCode ierr;
2817dfb205c3SBarry Smith 
2818dfb205c3SBarry Smith 
2819dfb205c3SBarry Smith  PetscFunctionBegin;
2820dfb205c3SBarry Smith   if (i[0]) {
2821dfb205c3SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2822dfb205c3SBarry Smith   }
2823dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2824dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2825dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2826dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2827dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2828dfb205c3SBarry Smith   PetscFunctionReturn(0);
2829dfb205c3SBarry Smith }
2830dfb205c3SBarry Smith 
2831dfb205c3SBarry Smith 
2832dfb205c3SBarry Smith #undef __FUNCT__
2833dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2834dfb205c3SBarry Smith /*@C
2835dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2836dfb205c3SBarry Smith    (the default parallel PETSc format).
2837dfb205c3SBarry Smith 
2838dfb205c3SBarry Smith    Collective on MPI_Comm
2839dfb205c3SBarry Smith 
2840dfb205c3SBarry Smith    Input Parameters:
2841dfb205c3SBarry Smith +  A - the matrix
2842dfb205c3SBarry Smith .  bs - the block size
2843dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2844dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2845dfb205c3SBarry Smith -  v - optional values in the matrix
2846dfb205c3SBarry Smith 
2847dfb205c3SBarry Smith    Level: developer
2848dfb205c3SBarry Smith 
2849dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2850dfb205c3SBarry Smith 
2851dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2852dfb205c3SBarry Smith @*/
28537087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2854dfb205c3SBarry Smith {
28554ac538c5SBarry Smith   PetscErrorCode ierr;
2856dfb205c3SBarry Smith 
2857dfb205c3SBarry Smith   PetscFunctionBegin;
28584ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2859dfb205c3SBarry Smith   PetscFunctionReturn(0);
2860dfb205c3SBarry Smith }
2861dfb205c3SBarry Smith 
2862dfb205c3SBarry Smith 
2863