xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 887ee2cac12359d3277df40f0f9d9319b4dfdee3)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
146d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
147d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
169a30f8f8cSSatish Balay 
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
2610880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++  = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3080880e062SHong Zhang         }
3090880e062SHong Zhang         else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3230880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
3260880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3300880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3360880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col =  in[j];
3380880e062SHong Zhang             }
3390880e062SHong Zhang           }
3400880e062SHong Zhang           else col = in[j];
341e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3420880e062SHong Zhang         }
3430880e062SHong Zhang       }
3440880e062SHong Zhang     } else {
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
36897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
376a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data --;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     } else {
39629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
397a30f8f8cSSatish Balay     }
398a30f8f8cSSatish Balay   }
399a30f8f8cSSatish Balay  PetscFunctionReturn(0);
400a30f8f8cSSatish Balay }
401a30f8f8cSSatish Balay 
4024a2ae208SSatish Balay #undef __FUNCT__
4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
405a30f8f8cSSatish Balay {
406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
407dfbe8321SBarry Smith   PetscErrorCode ierr;
408a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
409a30f8f8cSSatish Balay 
410a30f8f8cSSatish Balay   PetscFunctionBegin;
411a30f8f8cSSatish Balay   if (baij->size == 1) {
412a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
413a30f8f8cSSatish Balay   } else {
414a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
415f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
418a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4207adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
422a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4230b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4240b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4250b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4260b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
427899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
428d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4290b8dc8d2SHong Zhang       MatScalar    *v;
4300b8dc8d2SHong Zhang 
431d0f46423SBarry Smith       ierr  = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
432d0f46423SBarry Smith       rsum2 = rsum + mat->cmap->N;
433d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4430b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4600b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
4720b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
473a30f8f8cSSatish Balay     } else {
47429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
475a30f8f8cSSatish Balay     }
476a30f8f8cSSatish Balay   }
477a30f8f8cSSatish Balay   PetscFunctionReturn(0);
478a30f8f8cSSatish Balay }
479a30f8f8cSSatish Balay 
4804a2ae208SSatish Balay #undef __FUNCT__
4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
483a30f8f8cSSatish Balay {
484a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
485dfbe8321SBarry Smith   PetscErrorCode ierr;
4861302d50aSBarry Smith   PetscInt       nstash,reallocs;
487a30f8f8cSSatish Balay   InsertMode     addv;
488a30f8f8cSSatish Balay 
489a30f8f8cSSatish Balay   PetscFunctionBegin;
490a30f8f8cSSatish Balay   if (baij->donotstash) {
491a30f8f8cSSatish Balay     PetscFunctionReturn(0);
492a30f8f8cSSatish Balay   }
493a30f8f8cSSatish Balay 
494a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4957adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
496a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
49729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
498a30f8f8cSSatish Balay   }
499a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
500a30f8f8cSSatish Balay 
501d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5021e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
503a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   PetscFunctionReturn(0);
508a30f8f8cSSatish Balay }
509a30f8f8cSSatish Balay 
5104a2ae208SSatish Balay #undef __FUNCT__
5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
513a30f8f8cSSatish Balay {
514a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
515a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5166849ba73SBarry Smith   PetscErrorCode ierr;
51713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
518e44c0bd4SBarry Smith   PetscInt       *row,*col;
519e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52013f74950SBarry Smith   PetscMPIInt    n;
521a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
522a30f8f8cSSatish Balay   MatScalar      *val;
523a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
524a30f8f8cSSatish Balay 
52591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
526a30f8f8cSSatish Balay   PetscFunctionBegin;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay   if (!baij->donotstash) {
529a30f8f8cSSatish Balay     while (1) {
530a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       if (!flg) break;
532a30f8f8cSSatish Balay 
533a30f8f8cSSatish Balay       for (i=0; i<n;) {
534a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
535a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
536a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
537a30f8f8cSSatish Balay         else       ncols = n-i;
538a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
539dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
540a30f8f8cSSatish Balay         i = j;
541a30f8f8cSSatish Balay       }
542a30f8f8cSSatish Balay     }
543a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
545a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
546a30f8f8cSSatish Balay        restore the original flags */
547a30f8f8cSSatish Balay     r1 = baij->roworiented;
548a30f8f8cSSatish Balay     r2 = a->roworiented;
54991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
550a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
551a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
553a30f8f8cSSatish Balay     while (1) {
554a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       if (!flg) break;
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay       for (i=0; i<n;) {
558a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
559a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
560a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
561a30f8f8cSSatish Balay         else       ncols = n-i;
562dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
563a30f8f8cSSatish Balay         i = j;
564a30f8f8cSSatish Balay       }
565a30f8f8cSSatish Balay     }
566a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
576a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
577a30f8f8cSSatish Balay   /*
578a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
579a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
580a30f8f8cSSatish Balay   */
581a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5827adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
584c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     }
586a30f8f8cSSatish Balay   }
587a30f8f8cSSatish Balay 
588a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
590a30f8f8cSSatish Balay   }
59191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
595a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   baij->rowvalues = 0;
5975222a1afSHong Zhang 
598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
599a30f8f8cSSatish Balay }
600a30f8f8cSSatish Balay 
601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
605a30f8f8cSSatish Balay {
606a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
607dfbe8321SBarry Smith   PetscErrorCode    ierr;
608d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6091302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
611b0a32e0cSBarry Smith   PetscViewer       sviewer;
612f3ef73ceSBarry Smith   PetscViewerFormat format;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
61532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
616fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61732077d6dSBarry Smith   if (iascii) {
618b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
619456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
620a30f8f8cSSatish Balay       MatInfo info;
6217adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
624d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
625d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       PetscFunctionReturn(0);
634fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
638c1490034SHong Zhang       PetscFunctionReturn(0);
639a30f8f8cSSatish Balay     }
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   if (isdraw) {
643b0a32e0cSBarry Smith     PetscDraw  draw;
644a30f8f8cSSatish Balay     PetscTruth isnull;
645b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
646b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   if (size == 1) {
6507adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
652a30f8f8cSSatish Balay   } else {
653a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
654a30f8f8cSSatish Balay     Mat          A;
65565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
657d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
658a30f8f8cSSatish Balay     MatScalar    *a;
659a30f8f8cSSatish Balay 
660f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6617adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     if (!rank) {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     } else {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     }
667f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
668d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay     /* copy over the A part */
67265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
673a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6741302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
677e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
678a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
679a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
680e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
681a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
682dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
683a30f8f8cSSatish Balay           col++; a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
693a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
698a30f8f8cSSatish Balay           col++; a += bs;
699a30f8f8cSSatish Balay         }
700a30f8f8cSSatish Balay       }
701a30f8f8cSSatish Balay     }
702a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     /*
706a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
707b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
708a30f8f8cSSatish Balay     */
709b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71065d70643SHong Zhang     if (!rank) {
7117adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     }
714b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay   PetscFunctionReturn(0);
718a30f8f8cSSatish Balay }
719a30f8f8cSSatish Balay 
7204a2ae208SSatish Balay #undef __FUNCT__
7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
723a30f8f8cSSatish Balay {
724dfbe8321SBarry Smith   PetscErrorCode ierr;
72532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   PetscFunctionBegin;
72832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
729fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
730b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
731fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
733a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   } else {
7351302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay   PetscFunctionReturn(0);
738a30f8f8cSSatish Balay }
739a30f8f8cSSatish Balay 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
743a30f8f8cSSatish Balay {
744a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   PetscFunctionBegin;
748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
749d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
750a30f8f8cSSatish Balay #endif
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7569c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #else
75805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
761a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
762a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76340781036SHong Zhang   if (baij->slvec0) {
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76640781036SHong Zhang   }
76740781036SHong Zhang   if (baij->slvec1) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77140781036SHong Zhang   }
77240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
776fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
778fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
779a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
78005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
781a30f8f8cSSatish Balay #endif
78259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
784899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
786901853e0SKris Buschelman 
787dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
793a30f8f8cSSatish Balay }
794a30f8f8cSSatish Balay 
7954a2ae208SSatish Balay #undef __FUNCT__
796a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
797dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
798a9d4b620SHong Zhang {
799a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
800dfbe8321SBarry Smith   PetscErrorCode ierr;
801d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
802fa22f6d0SBarry Smith   PetscScalar    *x,*from;
803a9d4b620SHong Zhang 
804a9d4b620SHong Zhang   PetscFunctionBegin;
805a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
806d0f46423SBarry Smith   if (nt != A->cmap->n) {
807a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
808a9d4b620SHong Zhang   }
809a9d4b620SHong Zhang 
810a9d4b620SHong Zhang   /* diagonal part */
811a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813a9d4b620SHong Zhang 
814a9d4b620SHong Zhang   /* subdiagonal part */
815a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816fc165ae2SBarry Smith 
817a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8181ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8191ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820a9d4b620SHong Zhang 
821fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8231ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824fc165ae2SBarry Smith 
825fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827a9d4b620SHong Zhang   /* supperdiagonal part */
828a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829a9d4b620SHong Zhang   PetscFunctionReturn(0);
830a9d4b620SHong Zhang }
831a9d4b620SHong Zhang 
832a9d4b620SHong Zhang #undef __FUNCT__
83340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
835a30f8f8cSSatish Balay {
836a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
8381302d50aSBarry Smith   PetscInt       nt;
839a30f8f8cSSatish Balay 
840a30f8f8cSSatish Balay   PetscFunctionBegin;
841a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
842d0f46423SBarry Smith   if (nt != A->cmap->n) {
84329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a30f8f8cSSatish Balay   }
845a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
846d0f46423SBarry Smith   if (nt != A->rmap->N) {
84729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
848a30f8f8cSSatish Balay   }
84965d70643SHong Zhang 
850ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
851b941877fSHong Zhang   /* do diagonal part */
852b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
853b941877fSHong Zhang   /* do supperdiagonal part */
854ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
855b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
856b941877fSHong Zhang   /* do subdiagonal part */
857b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
858ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
859ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
86065d70643SHong Zhang 
861a30f8f8cSSatish Balay   PetscFunctionReturn(0);
862a30f8f8cSSatish Balay }
863a30f8f8cSSatish Balay 
8644a2ae208SSatish Balay #undef __FUNCT__
8654a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
866dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
867a30f8f8cSSatish Balay {
868de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
869dfbe8321SBarry Smith   PetscErrorCode ierr;
870d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
871a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
872a9d4b620SHong Zhang 
873a9d4b620SHong Zhang   PetscFunctionBegin;
874a9d4b620SHong Zhang   /*
8757adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
8767adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
877a9d4b620SHong Zhang   */
878a9d4b620SHong Zhang   /* diagonal part */
879a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
8802dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
881a9d4b620SHong Zhang 
882a9d4b620SHong Zhang   /* subdiagonal part */
883a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
884a9d4b620SHong Zhang 
885a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8861ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8871ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
888a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8891ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
890a9d4b620SHong Zhang 
891ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8921ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
893ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894a9d4b620SHong Zhang 
895a9d4b620SHong Zhang   /* supperdiagonal part */
896a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
897a9d4b620SHong Zhang 
898a9d4b620SHong Zhang   PetscFunctionReturn(0);
899a9d4b620SHong Zhang }
900a9d4b620SHong Zhang 
901a9d4b620SHong Zhang #undef __FUNCT__
902a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
903dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
904a9d4b620SHong Zhang {
905a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
906dfbe8321SBarry Smith   PetscErrorCode ierr;
907a30f8f8cSSatish Balay 
908a30f8f8cSSatish Balay   PetscFunctionBegin;
909ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
910b941877fSHong Zhang   /* do diagonal part */
911b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
912b941877fSHong Zhang   /* do supperdiagonal part */
913ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
914de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
915de8b6608SHong Zhang 
916b941877fSHong Zhang   /* do subdiagonal part */
917a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
918ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
919ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
920aa482183SHong Zhang 
921a30f8f8cSSatish Balay   PetscFunctionReturn(0);
922a30f8f8cSSatish Balay }
923a30f8f8cSSatish Balay 
924a30f8f8cSSatish Balay /*
925a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
926a30f8f8cSSatish Balay    diagonal block
927a30f8f8cSSatish Balay */
9284a2ae208SSatish Balay #undef __FUNCT__
9294a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
930dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
931a30f8f8cSSatish Balay {
932a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
933dfbe8321SBarry Smith   PetscErrorCode ierr;
934a30f8f8cSSatish Balay 
935a30f8f8cSSatish Balay   PetscFunctionBegin;
936d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
937a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
938a30f8f8cSSatish Balay   PetscFunctionReturn(0);
939a30f8f8cSSatish Balay }
940a30f8f8cSSatish Balay 
9414a2ae208SSatish Balay #undef __FUNCT__
9424a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
943f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
944a30f8f8cSSatish Balay {
945a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
946dfbe8321SBarry Smith   PetscErrorCode ierr;
947a30f8f8cSSatish Balay 
948a30f8f8cSSatish Balay   PetscFunctionBegin;
949f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
950f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
951a30f8f8cSSatish Balay   PetscFunctionReturn(0);
952a30f8f8cSSatish Balay }
953a30f8f8cSSatish Balay 
9544a2ae208SSatish Balay #undef __FUNCT__
9554a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9561302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
957a30f8f8cSSatish Balay {
958d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
959d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
960d0d4cfc2SHong Zhang   PetscErrorCode ierr;
961d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
962d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
963899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
964d0d4cfc2SHong Zhang 
965a30f8f8cSSatish Balay   PetscFunctionBegin;
9664eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
967d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
968d0d4cfc2SHong Zhang 
969d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
970d0d4cfc2SHong Zhang     /*
971d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
972d0d4cfc2SHong Zhang     */
973d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
974d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
975d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
976d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
977d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
978d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
979d0d4cfc2SHong Zhang     }
980d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
981d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
982d0d4cfc2SHong Zhang   }
983d0d4cfc2SHong Zhang 
984d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
985d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
986d0d4cfc2SHong Zhang 
987d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
988d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
989d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
990d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
991d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
992d0d4cfc2SHong Zhang   nztot = nzA + nzB;
993d0d4cfc2SHong Zhang 
994d0d4cfc2SHong Zhang   cmap  = mat->garray;
995d0d4cfc2SHong Zhang   if (v  || idx) {
996d0d4cfc2SHong Zhang     if (nztot) {
997d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
998d0d4cfc2SHong Zhang       PetscInt imark = -1;
999d0d4cfc2SHong Zhang       if (v) {
1000d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1001d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1002d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1003d0d4cfc2SHong Zhang           else break;
1004d0d4cfc2SHong Zhang         }
1005d0d4cfc2SHong Zhang         imark = i;
1006d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1007d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1008d0d4cfc2SHong Zhang       }
1009d0d4cfc2SHong Zhang       if (idx) {
1010d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1011d0d4cfc2SHong Zhang         if (imark > -1) {
1012d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1013d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1014d0d4cfc2SHong Zhang           }
1015d0d4cfc2SHong Zhang         } else {
1016d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1017d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1018d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1019d0d4cfc2SHong Zhang             else break;
1020d0d4cfc2SHong Zhang           }
1021d0d4cfc2SHong Zhang           imark = i;
1022d0d4cfc2SHong Zhang         }
1023d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1024d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1025d0d4cfc2SHong Zhang       }
1026d0d4cfc2SHong Zhang     } else {
1027d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1028d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1029d0d4cfc2SHong Zhang     }
1030d0d4cfc2SHong Zhang   }
1031d0d4cfc2SHong Zhang   *nz = nztot;
1032d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1033d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1034a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1035a30f8f8cSSatish Balay }
1036a30f8f8cSSatish Balay 
10374a2ae208SSatish Balay #undef __FUNCT__
10384a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10391302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1040a30f8f8cSSatish Balay {
1041a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1042a30f8f8cSSatish Balay 
1043a30f8f8cSSatish Balay   PetscFunctionBegin;
1044abc0a331SBarry Smith   if (!baij->getrowactive) {
1045abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1046a30f8f8cSSatish Balay   }
1047a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1048a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1049a30f8f8cSSatish Balay }
1050a30f8f8cSSatish Balay 
10514a2ae208SSatish Balay #undef __FUNCT__
1052d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1053d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1054d0d4cfc2SHong Zhang {
1055d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1056d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1057d0d4cfc2SHong Zhang 
1058d0d4cfc2SHong Zhang   PetscFunctionBegin;
1059d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1060d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1061d0d4cfc2SHong Zhang }
1062d0d4cfc2SHong Zhang #undef __FUNCT__
1063d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1064d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1065d0d4cfc2SHong Zhang {
1066d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1067d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1068d0d4cfc2SHong Zhang 
1069d0d4cfc2SHong Zhang   PetscFunctionBegin;
1070d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1071d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1072d0d4cfc2SHong Zhang }
1073d0d4cfc2SHong Zhang 
1074d0d4cfc2SHong Zhang #undef __FUNCT__
107599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
107699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
107799cafbc1SBarry Smith {
107899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
107999cafbc1SBarry Smith   PetscErrorCode ierr;
108099cafbc1SBarry Smith 
108199cafbc1SBarry Smith   PetscFunctionBegin;
108299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
108399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
108499cafbc1SBarry Smith   PetscFunctionReturn(0);
108599cafbc1SBarry Smith }
108699cafbc1SBarry Smith 
108799cafbc1SBarry Smith #undef __FUNCT__
108899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
108999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
109099cafbc1SBarry Smith {
109199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
109299cafbc1SBarry Smith   PetscErrorCode ierr;
109399cafbc1SBarry Smith 
109499cafbc1SBarry Smith   PetscFunctionBegin;
109599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
109699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
109799cafbc1SBarry Smith   PetscFunctionReturn(0);
109899cafbc1SBarry Smith }
109999cafbc1SBarry Smith 
110099cafbc1SBarry Smith #undef __FUNCT__
11014a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1102dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1103a30f8f8cSSatish Balay {
1104a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1105dfbe8321SBarry Smith   PetscErrorCode ierr;
1106a30f8f8cSSatish Balay 
1107a30f8f8cSSatish Balay   PetscFunctionBegin;
1108a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1109a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1110a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1111a30f8f8cSSatish Balay }
1112a30f8f8cSSatish Balay 
11134a2ae208SSatish Balay #undef __FUNCT__
11144a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1115dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1116a30f8f8cSSatish Balay {
1117a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1118a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1119dfbe8321SBarry Smith   PetscErrorCode ierr;
1120a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1121a30f8f8cSSatish Balay 
1122a30f8f8cSSatish Balay   PetscFunctionBegin;
1123d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1124a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1125a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1126a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1127a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1128a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1129a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1130a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1131a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1132a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1133a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1134a30f8f8cSSatish Balay     info->memory       = isend[3];
1135a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1136a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11377adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1139a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1140a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1141a30f8f8cSSatish Balay     info->memory       = irecv[3];
1142a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1143a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11447adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1145a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1146a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1147a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1148a30f8f8cSSatish Balay     info->memory       = irecv[3];
1149a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1150a30f8f8cSSatish Balay   } else {
115177431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1152a30f8f8cSSatish Balay   }
1153a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1154a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1155a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1156a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1157a30f8f8cSSatish Balay }
1158a30f8f8cSSatish Balay 
11594a2ae208SSatish Balay #undef __FUNCT__
11604a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11614e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1162a30f8f8cSSatish Balay {
1163a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1164d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1165dfbe8321SBarry Smith   PetscErrorCode ierr;
1166a30f8f8cSSatish Balay 
1167a30f8f8cSSatish Balay   PetscFunctionBegin;
1168e98b92d7SKris Buschelman   switch (op) {
1169512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1170e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
117128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1172a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1173e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
11744e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11754e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1176e98b92d7SKris Buschelman     break;
1177e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
11784e0d8c25SBarry Smith     a->roworiented = flg;
11794e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11804e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1181e98b92d7SKris Buschelman     break;
11824e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1183290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1184e98b92d7SKris Buschelman     break;
1185e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
11864e0d8c25SBarry Smith     a->donotstash = flg;
1187e98b92d7SKris Buschelman     break;
1188e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
11894e0d8c25SBarry Smith     a->ht_flag = flg;
1190e98b92d7SKris Buschelman     break;
11919a4540c5SBarry Smith   case MAT_HERMITIAN:
11924e0d8c25SBarry Smith     if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
119377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
119477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
11959a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
11964e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1197290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
119877e54ba9SKris Buschelman     break;
1199d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12004e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1201d0d4cfc2SHong Zhang     break;
1202d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12034e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1204d0d4cfc2SHong Zhang     break;
1205d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12064e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1207d0d4cfc2SHong Zhang     break;
1208e98b92d7SKris Buschelman   default:
1209ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1210a30f8f8cSSatish Balay   }
1211a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1212a30f8f8cSSatish Balay }
1213a30f8f8cSSatish Balay 
12144a2ae208SSatish Balay #undef __FUNCT__
12158115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1216fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1217a30f8f8cSSatish Balay {
1218dfbe8321SBarry Smith   PetscErrorCode ierr;
1219a30f8f8cSSatish Balay   PetscFunctionBegin;
1220815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1221999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1222fc4dec0aSBarry Smith   }
12238115998fSBarry Smith   PetscFunctionReturn(0);
1224a30f8f8cSSatish Balay }
1225a30f8f8cSSatish Balay 
12264a2ae208SSatish Balay #undef __FUNCT__
12274a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1228dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1229a30f8f8cSSatish Balay {
1230a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1231a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1232dfbe8321SBarry Smith   PetscErrorCode ierr;
12335e90f9d9SHong Zhang   PetscInt       nv,m,n;
1234b3bf805bSHong Zhang   PetscTruth     flg;
1235a30f8f8cSSatish Balay 
1236a30f8f8cSSatish Balay   PetscFunctionBegin;
1237a30f8f8cSSatish Balay   if (ll != rr){
1238b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1239b3bf805bSHong Zhang     if (!flg)
124029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1241a30f8f8cSSatish Balay   }
1242b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1243b3bf805bSHong Zhang 
12445e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12455e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1246b3bf805bSHong Zhang 
12475e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12485e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12495e90f9d9SHong Zhang 
1250ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12515e90f9d9SHong Zhang 
12525e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1253a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12545e90f9d9SHong Zhang 
12555e90f9d9SHong Zhang   /* scale the diagonal part */
1256a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1257a30f8f8cSSatish Balay 
12585e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1259ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1260a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1261a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1262a30f8f8cSSatish Balay }
1263a30f8f8cSSatish Balay 
12644a2ae208SSatish Balay #undef __FUNCT__
12654a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1266dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1267a30f8f8cSSatish Balay {
1268f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1269dfbe8321SBarry Smith   PetscErrorCode ierr;
1270a30f8f8cSSatish Balay 
1271a30f8f8cSSatish Balay   PetscFunctionBegin;
1272a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1273a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1274a30f8f8cSSatish Balay }
1275a30f8f8cSSatish Balay 
12766849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1277a30f8f8cSSatish Balay 
12784a2ae208SSatish Balay #undef __FUNCT__
12794a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1280dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1281a30f8f8cSSatish Balay {
1282a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1283a30f8f8cSSatish Balay   Mat            a,b,c,d;
1284a30f8f8cSSatish Balay   PetscTruth     flg;
1285dfbe8321SBarry Smith   PetscErrorCode ierr;
1286a30f8f8cSSatish Balay 
1287a30f8f8cSSatish Balay   PetscFunctionBegin;
1288a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1289a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1290a30f8f8cSSatish Balay 
1291a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1292abc0a331SBarry Smith   if (flg) {
1293a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1294a30f8f8cSSatish Balay   }
12957adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1296a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1297a30f8f8cSSatish Balay }
1298a30f8f8cSSatish Balay 
12994a2ae208SSatish Balay #undef __FUNCT__
13003c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13013c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13023c896bc6SHong Zhang {
13033c896bc6SHong Zhang   PetscErrorCode ierr;
13043c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13053c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13063c896bc6SHong Zhang 
13073c896bc6SHong Zhang   PetscFunctionBegin;
13083c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13093c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1310d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13113c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1312d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13133c896bc6SHong Zhang   } else {
13143c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13153c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13163c896bc6SHong Zhang   }
13173c896bc6SHong Zhang   PetscFunctionReturn(0);
13183c896bc6SHong Zhang }
13193c896bc6SHong Zhang 
13203c896bc6SHong Zhang #undef __FUNCT__
13214a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1322dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1323273d9f13SBarry Smith {
1324dfbe8321SBarry Smith   PetscErrorCode ierr;
1325273d9f13SBarry Smith 
1326273d9f13SBarry Smith   PetscFunctionBegin;
1327db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1328273d9f13SBarry Smith   PetscFunctionReturn(0);
1329273d9f13SBarry Smith }
1330a5e6ed63SBarry Smith 
13314fe895cdSHong Zhang #include "petscblaslapack.h"
13324fe895cdSHong Zhang #undef __FUNCT__
13334fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13344fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13354fe895cdSHong Zhang {
13364fe895cdSHong Zhang   PetscErrorCode ierr;
13374fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13384fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13394fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13404fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13414fe895cdSHong Zhang 
13424fe895cdSHong Zhang   PetscFunctionBegin;
13434fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13444fe895cdSHong Zhang     PetscScalar alpha = a;
13454fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13464fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13470805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13484fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13494fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13504fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13510805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13524fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13534fe895cdSHong Zhang   } else {
1354d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13554fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1356d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13574fe895cdSHong Zhang   }
13584fe895cdSHong Zhang   PetscFunctionReturn(0);
13594fe895cdSHong Zhang }
13604fe895cdSHong Zhang 
1361a5e6ed63SBarry Smith #undef __FUNCT__
1362a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13631302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1364a5e6ed63SBarry Smith {
13656849ba73SBarry Smith   PetscErrorCode ierr;
13661302d50aSBarry Smith   PetscInt       i;
1367a5e6ed63SBarry Smith   PetscTruth     flg;
1368a5e6ed63SBarry Smith 
13696849ba73SBarry Smith   PetscFunctionBegin;
1370a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1371a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1372a5e6ed63SBarry Smith     if (!flg) {
13731302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1374a5e6ed63SBarry Smith     }
1375a5e6ed63SBarry Smith   }
1376a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1377a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1378a5e6ed63SBarry Smith }
1379a5e6ed63SBarry Smith 
1380a5e6ed63SBarry Smith 
1381a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1382a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1383a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1384a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1385a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1386a9d4b620SHong Zhang        MatMult_MPISBAIJ,
138797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1388431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1389431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1390a30f8f8cSSatish Balay        0,
1391a30f8f8cSSatish Balay        0,
1392a30f8f8cSSatish Balay        0,
139397304618SKris Buschelman /*10*/ 0,
1394a30f8f8cSSatish Balay        0,
1395a30f8f8cSSatish Balay        0,
13962798e883SHong Zhang        MatRelax_MPISBAIJ,
1397a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
139897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1399a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1400a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1401a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1402a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
140397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1404a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1405a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1406a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1407d519adbfSMatthew Knepley /*24*/ 0,
1408a30f8f8cSSatish Balay        0,
1409a30f8f8cSSatish Balay        0,
1410a30f8f8cSSatish Balay        0,
1411a30f8f8cSSatish Balay        0,
1412d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1413b5df2d14SHong Zhang        0,
1414a30f8f8cSSatish Balay        0,
1415a30f8f8cSSatish Balay        0,
1416a30f8f8cSSatish Balay        0,
1417d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1418a30f8f8cSSatish Balay        0,
1419a30f8f8cSSatish Balay        0,
1420a30f8f8cSSatish Balay        0,
1421a30f8f8cSSatish Balay        0,
1422d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1423a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1424d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1425a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14263c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1427d519adbfSMatthew Knepley /*44*/ 0,
1428a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1429a30f8f8cSSatish Balay        0,
1430a30f8f8cSSatish Balay        0,
1431a30f8f8cSSatish Balay        0,
1432d519adbfSMatthew Knepley /*49*/ 0,
1433a30f8f8cSSatish Balay        0,
1434a30f8f8cSSatish Balay        0,
1435a30f8f8cSSatish Balay        0,
1436a30f8f8cSSatish Balay        0,
1437d519adbfSMatthew Knepley /*54*/ 0,
1438a30f8f8cSSatish Balay        0,
1439a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1440a30f8f8cSSatish Balay        0,
1441a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1442d519adbfSMatthew Knepley /*59*/ 0,
1443a30f8f8cSSatish Balay        0,
1444a30f8f8cSSatish Balay        0,
1445357abbc8SBarry Smith        0,
144624d5174aSHong Zhang        0,
1447d519adbfSMatthew Knepley /*64*/ 0,
144824d5174aSHong Zhang        0,
144924d5174aSHong Zhang        0,
145024d5174aSHong Zhang        0,
145124d5174aSHong Zhang        0,
1452d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
145324d5174aSHong Zhang        0,
145497304618SKris Buschelman        0,
145597304618SKris Buschelman        0,
145697304618SKris Buschelman        0,
1457d519adbfSMatthew Knepley /*74*/ 0,
145897304618SKris Buschelman        0,
145997304618SKris Buschelman        0,
146097304618SKris Buschelman        0,
146197304618SKris Buschelman        0,
1462d519adbfSMatthew Knepley /*79*/ 0,
146397304618SKris Buschelman        0,
146497304618SKris Buschelman        0,
146597304618SKris Buschelman        0,
1466865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1467d519adbfSMatthew Knepley /*84*/ 0,
1468865e5f61SKris Buschelman        0,
1469865e5f61SKris Buschelman        0,
1470865e5f61SKris Buschelman        0,
1471865e5f61SKris Buschelman        0,
1472d519adbfSMatthew Knepley /*89*/ 0,
1473865e5f61SKris Buschelman        0,
1474865e5f61SKris Buschelman        0,
1475865e5f61SKris Buschelman        0,
1476865e5f61SKris Buschelman        0,
1477d519adbfSMatthew Knepley /*94*/ 0,
1478865e5f61SKris Buschelman        0,
1479865e5f61SKris Buschelman        0,
148099cafbc1SBarry Smith        0,
148199cafbc1SBarry Smith        0,
1482d519adbfSMatthew Knepley /*99*/ 0,
148399cafbc1SBarry Smith        0,
148499cafbc1SBarry Smith        0,
148599cafbc1SBarry Smith        0,
148699cafbc1SBarry Smith        0,
1487d519adbfSMatthew Knepley /*104*/0,
148899cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1489d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1490d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1491d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
149299cafbc1SBarry Smith };
1493a30f8f8cSSatish Balay 
1494a30f8f8cSSatish Balay 
1495a30f8f8cSSatish Balay EXTERN_C_BEGIN
14964a2ae208SSatish Balay #undef __FUNCT__
14974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1498be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1499a30f8f8cSSatish Balay {
1500a30f8f8cSSatish Balay   PetscFunctionBegin;
1501a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1502a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1503a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1504a30f8f8cSSatish Balay }
1505a30f8f8cSSatish Balay EXTERN_C_END
1506a30f8f8cSSatish Balay 
1507273d9f13SBarry Smith EXTERN_C_BEGIN
15084a2ae208SSatish Balay #undef __FUNCT__
1509a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1510be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1511a23d5eceSKris Buschelman {
1512a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1513dfbe8321SBarry Smith   PetscErrorCode ierr;
1514db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1515a23d5eceSKris Buschelman 
1516a23d5eceSKris Buschelman   PetscFunctionBegin;
1517db4efbfdSBarry Smith   if (bs < 0){
15187adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1519db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15208c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1521db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1522db4efbfdSBarry Smith   }
1523db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1524db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1525db4efbfdSBarry Smith   }
1526db4efbfdSBarry Smith   bs = newbs;
1527a23d5eceSKris Buschelman 
1528a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1529a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
153077431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
153177431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1532899cda47SBarry Smith 
1533d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
1534d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
1535d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
1536899cda47SBarry Smith 
1537a23d5eceSKris Buschelman   if (d_nnz) {
1538d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
153977431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1540a23d5eceSKris Buschelman     }
1541a23d5eceSKris Buschelman   }
1542a23d5eceSKris Buschelman   if (o_nnz) {
1543d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
154477431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1545a23d5eceSKris Buschelman     }
1546a23d5eceSKris Buschelman   }
1547a23d5eceSKris Buschelman 
1548a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1549d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1550d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1551d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1552d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1553a23d5eceSKris Buschelman   }
1554a23d5eceSKris Buschelman 
1555d0f46423SBarry Smith   B->rmap->bs  = bs;
1556a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1557a23d5eceSKris Buschelman   b->mbs = mbs;
1558a23d5eceSKris Buschelman   b->nbs = mbs;
1559a23d5eceSKris Buschelman   b->Mbs = Mbs;
1560a23d5eceSKris Buschelman   b->Nbs = Mbs;
1561a23d5eceSKris Buschelman 
1562a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1563d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1564a23d5eceSKris Buschelman   }
1565d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1566d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1567a23d5eceSKris Buschelman 
1568d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1569d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1570a23d5eceSKris Buschelman 
1571526dfc15SBarry Smith   if (!B->preallocated) {
1572f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1573d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
15749c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
157552e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1576f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1577d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
15784aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
157952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1580a23d5eceSKris Buschelman     /* build cache for off array entries formed */
15817adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1582526dfc15SBarry Smith   }
1583a23d5eceSKris Buschelman 
1584526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1585526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1586526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1587a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1588a23d5eceSKris Buschelman }
1589a23d5eceSKris Buschelman EXTERN_C_END
1590a23d5eceSKris Buschelman 
15915c9eb25fSBarry Smith EXTERN_C_BEGIN
1592611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1593611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1594611f576cSBarry Smith #endif
1595611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
15965c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1597611f576cSBarry Smith #endif
1598b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1599b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1600b5e56a35SBarry Smith #endif
16015c9eb25fSBarry Smith EXTERN_C_END
16025c9eb25fSBarry Smith 
16030bad9183SKris Buschelman /*MC
1604fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16050bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16060bad9183SKris Buschelman 
16070bad9183SKris Buschelman    Options Database Keys:
16080bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16090bad9183SKris Buschelman 
16100bad9183SKris Buschelman   Level: beginner
16110bad9183SKris Buschelman 
16120bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16130bad9183SKris Buschelman M*/
16140bad9183SKris Buschelman 
1615a23d5eceSKris Buschelman EXTERN_C_BEGIN
1616a23d5eceSKris Buschelman #undef __FUNCT__
16174a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1618be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1619b5df2d14SHong Zhang {
1620b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1621dfbe8321SBarry Smith   PetscErrorCode ierr;
1622b5df2d14SHong Zhang   PetscTruth     flg;
1623b5df2d14SHong Zhang 
1624b5df2d14SHong Zhang   PetscFunctionBegin;
1625b5df2d14SHong Zhang 
162638f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1627b0a32e0cSBarry Smith   B->data = (void*)b;
1628b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1629b5df2d14SHong Zhang 
1630b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1631b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1632b5df2d14SHong Zhang   B->mapping         = 0;
1633b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1634b5df2d14SHong Zhang 
1635b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16367adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16377adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1638b5df2d14SHong Zhang 
1639b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1640899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1641b5df2d14SHong Zhang 
1642b5df2d14SHong Zhang   /* build cache for off array entries formed */
16437adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1644b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1645b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1646b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1647b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1648b5df2d14SHong Zhang 
1649b5df2d14SHong Zhang   /* stuff used in block assembly */
1650b5df2d14SHong Zhang   b->barray       = 0;
1651b5df2d14SHong Zhang 
1652b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1653b5df2d14SHong Zhang   b->lvec         = 0;
1654b5df2d14SHong Zhang   b->Mvctx        = 0;
165540781036SHong Zhang   b->slvec0       = 0;
165640781036SHong Zhang   b->slvec0b      = 0;
165740781036SHong Zhang   b->slvec1       = 0;
165840781036SHong Zhang   b->slvec1a      = 0;
165940781036SHong Zhang   b->slvec1b      = 0;
166040781036SHong Zhang   b->sMvctx       = 0;
1661b5df2d14SHong Zhang 
1662b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1663b5df2d14SHong Zhang   b->rowindices   = 0;
1664b5df2d14SHong Zhang   b->rowvalues    = 0;
1665b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1666b5df2d14SHong Zhang 
1667b5df2d14SHong Zhang   /* hash table stuff */
1668b5df2d14SHong Zhang   b->ht           = 0;
1669b5df2d14SHong Zhang   b->hd           = 0;
1670b5df2d14SHong Zhang   b->ht_size      = 0;
1671b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1672b5df2d14SHong Zhang   b->ht_fact      = 0;
1673b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1674b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1675b5df2d14SHong Zhang 
167659ffdab8SBarry Smith   b->in_loc       = 0;
167759ffdab8SBarry Smith   b->v_loc        = 0;
167859ffdab8SBarry Smith   b->n_loc        = 0;
16797adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
16808c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1681b5df2d14SHong Zhang     if (flg) {
1682f6275e2eSBarry Smith       PetscReal fact = 1.39;
16834e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
16848c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1685b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1686b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
16871e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1688b5df2d14SHong Zhang     }
16898c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
16908c07d4e3SBarry Smith 
1691b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1692b5e56a35SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_pastix_C",
1693b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1694b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1695b5e56a35SBarry Smith #endif
1696611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
16975c9eb25fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_mumps_C",
16985c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
16995c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1700611f576cSBarry Smith #endif
1701611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
17025c9eb25fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_spooles_C",
17035c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17045c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1705611f576cSBarry Smith #endif
1706b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1707b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1708b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1709b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1710b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1711b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1712b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1713b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1714b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1715a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1716a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1717a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
171823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
171923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
172023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
172123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
172217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1723b5df2d14SHong Zhang   PetscFunctionReturn(0);
1724b5df2d14SHong Zhang }
1725273d9f13SBarry Smith EXTERN_C_END
1726b5df2d14SHong Zhang 
1727209238afSKris Buschelman /*MC
1728002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1729209238afSKris Buschelman 
1730209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1731209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1732209238afSKris Buschelman 
1733209238afSKris Buschelman    Options Database Keys:
1734209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1735209238afSKris Buschelman 
1736209238afSKris Buschelman   Level: beginner
1737209238afSKris Buschelman 
1738209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1739209238afSKris Buschelman M*/
1740209238afSKris Buschelman 
1741209238afSKris Buschelman EXTERN_C_BEGIN
1742209238afSKris Buschelman #undef __FUNCT__
1743209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1744be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1745dfbe8321SBarry Smith {
17466849ba73SBarry Smith   PetscErrorCode ierr;
17471302d50aSBarry Smith   PetscMPIInt    size;
1748209238afSKris Buschelman 
1749209238afSKris Buschelman   PetscFunctionBegin;
17507adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1751209238afSKris Buschelman   if (size == 1) {
1752209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1753209238afSKris Buschelman   } else {
1754209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1755209238afSKris Buschelman   }
1756209238afSKris Buschelman   PetscFunctionReturn(0);
1757209238afSKris Buschelman }
1758209238afSKris Buschelman EXTERN_C_END
1759209238afSKris Buschelman 
17604a2ae208SSatish Balay #undef __FUNCT__
17614a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1762b5df2d14SHong Zhang /*@C
1763b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1764b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1765b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1766b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1767b5df2d14SHong Zhang 
1768b5df2d14SHong Zhang    Collective on Mat
1769b5df2d14SHong Zhang 
1770b5df2d14SHong Zhang    Input Parameters:
1771b5df2d14SHong Zhang +  A - the matrix
1772b5df2d14SHong Zhang .  bs   - size of blockk
1773b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1774b5df2d14SHong Zhang            submatrix  (same for all local rows)
1775b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17766d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17776d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17786d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1779b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1780b5df2d14SHong Zhang            submatrix (same for all local rows).
1781b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1782b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1783b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1784b5df2d14SHong Zhang 
1785b5df2d14SHong Zhang 
1786b5df2d14SHong Zhang    Options Database Keys:
1787b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1788b5df2d14SHong Zhang                      block calculations (much slower)
1789b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1790b5df2d14SHong Zhang 
1791b5df2d14SHong Zhang    Notes:
1792b5df2d14SHong Zhang 
1793b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1794b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1795b5df2d14SHong Zhang 
179649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
179749a6f317SBarry Smith 
1798b5df2d14SHong Zhang    Storage Information:
1799b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1800b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1801b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1802b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1803b5df2d14SHong Zhang 
1804b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1805b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1806b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1807b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1808b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1809b5df2d14SHong Zhang 
1810aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1811aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1812aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1813aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1814aa95bbe8SBarry Smith 
1815b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1816b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1817b5df2d14SHong Zhang 
1818b5df2d14SHong Zhang .vb
1819b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1820b5df2d14SHong Zhang           -------------------
1821b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1822b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1823b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1824b5df2d14SHong Zhang           -------------------
1825b5df2d14SHong Zhang .ve
1826b5df2d14SHong Zhang 
1827b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1828b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18296d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18306d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1831b5df2d14SHong Zhang 
18326d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18336d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1834b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1835b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1836b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1837b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1838b5df2d14SHong Zhang    matrices.
1839b5df2d14SHong Zhang 
1840b5df2d14SHong Zhang    Level: intermediate
1841b5df2d14SHong Zhang 
1842b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1843b5df2d14SHong Zhang 
1844b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1845b5df2d14SHong Zhang @*/
1846be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1847b5df2d14SHong Zhang {
18481302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1849b5df2d14SHong Zhang 
1850b5df2d14SHong Zhang   PetscFunctionBegin;
1851a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1852a23d5eceSKris Buschelman   if (f) {
1853a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1854b5df2d14SHong Zhang   }
1855b5df2d14SHong Zhang   PetscFunctionReturn(0);
1856b5df2d14SHong Zhang }
1857b5df2d14SHong Zhang 
18584a2ae208SSatish Balay #undef __FUNCT__
18594a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1860a30f8f8cSSatish Balay /*@C
1861a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1862a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1863a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1864a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1865a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1866a30f8f8cSSatish Balay 
1867a30f8f8cSSatish Balay    Collective on MPI_Comm
1868a30f8f8cSSatish Balay 
1869a30f8f8cSSatish Balay    Input Parameters:
1870a30f8f8cSSatish Balay +  comm - MPI communicator
1871a30f8f8cSSatish Balay .  bs   - size of blockk
1872a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1873a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1874a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1875a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1876a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1877a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1878a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1879a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1880a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1881a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1882a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18836d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18846d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18856d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1886a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1887a30f8f8cSSatish Balay            submatrix (same for all local rows).
1888a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1889a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1890a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1891a30f8f8cSSatish Balay 
1892a30f8f8cSSatish Balay    Output Parameter:
1893a30f8f8cSSatish Balay .  A - the matrix
1894a30f8f8cSSatish Balay 
1895a30f8f8cSSatish Balay    Options Database Keys:
1896a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1897a30f8f8cSSatish Balay                      block calculations (much slower)
1898a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1899a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1900a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1901a30f8f8cSSatish Balay 
1902175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1903ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1904175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1905175b88e8SBarry Smith 
1906a30f8f8cSSatish Balay    Notes:
1907d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19086d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1909d1be2dadSMatthew Knepley 
1910a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1911a30f8f8cSSatish Balay    (possibly both).
1912a30f8f8cSSatish Balay 
1913a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1914a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1915a30f8f8cSSatish Balay 
191649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
191749a6f317SBarry Smith 
1918a30f8f8cSSatish Balay    Storage Information:
1919a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1920a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1921a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1922a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1923a30f8f8cSSatish Balay 
1924a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1925a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1926a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1927a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1928a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1929a30f8f8cSSatish Balay 
1930a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1931a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1932a30f8f8cSSatish Balay 
1933a30f8f8cSSatish Balay .vb
1934a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1935a30f8f8cSSatish Balay           -------------------
1936a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1937a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1938a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1939a30f8f8cSSatish Balay           -------------------
1940a30f8f8cSSatish Balay .ve
1941a30f8f8cSSatish Balay 
1942a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1943a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19446d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19456d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1946a30f8f8cSSatish Balay 
19476d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19486d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1949a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1950a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1951a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1952a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1953a30f8f8cSSatish Balay    matrices.
1954a30f8f8cSSatish Balay 
1955a30f8f8cSSatish Balay    Level: intermediate
1956a30f8f8cSSatish Balay 
1957a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1958a30f8f8cSSatish Balay 
1959a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1960a30f8f8cSSatish Balay @*/
1961a30f8f8cSSatish Balay 
1962be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1963a30f8f8cSSatish Balay {
19646849ba73SBarry Smith   PetscErrorCode ierr;
19651302d50aSBarry Smith   PetscMPIInt    size;
1966a30f8f8cSSatish Balay 
1967a30f8f8cSSatish Balay   PetscFunctionBegin;
1968f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1969f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1970273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1971273d9f13SBarry Smith   if (size > 1) {
1972b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1973b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1974273d9f13SBarry Smith   } else {
1975273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1976273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1977273d9f13SBarry Smith   }
1978a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1979a30f8f8cSSatish Balay }
1980a30f8f8cSSatish Balay 
1981a30f8f8cSSatish Balay 
19824a2ae208SSatish Balay #undef __FUNCT__
19834a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
19846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1985a30f8f8cSSatish Balay {
1986a30f8f8cSSatish Balay   Mat            mat;
1987a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1988dfbe8321SBarry Smith   PetscErrorCode ierr;
1989d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
1990387bc808SHong Zhang   PetscScalar    *array;
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay   PetscFunctionBegin;
1993a30f8f8cSSatish Balay   *newmat       = 0;
19947adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
1995d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
19967adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
19971d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1998d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr);
1999d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr);
2000e1b6402fSHong Zhang 
200182327fa8SHong Zhang   mat->factor       = matin->factor;
2002273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
200382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20047fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20057fff6886SHong Zhang 
2006b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2007a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2008a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2009a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2010a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2011a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2012a30f8f8cSSatish Balay 
2013899cda47SBarry Smith 
2014a30f8f8cSSatish Balay   a->size         = oldmat->size;
2015a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2016a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2017a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2018a30f8f8cSSatish Balay   a->rowindices   = 0;
2019a30f8f8cSSatish Balay   a->rowvalues    = 0;
2020a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2021a30f8f8cSSatish Balay   a->barray       = 0;
2022899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2023899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2024899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2025899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2026a30f8f8cSSatish Balay 
2027a30f8f8cSSatish Balay   /* hash table stuff */
2028a30f8f8cSSatish Balay   a->ht           = 0;
2029a30f8f8cSSatish Balay   a->hd           = 0;
2030a30f8f8cSSatish Balay   a->ht_size      = 0;
2031a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2032a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2033a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2034a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2035a30f8f8cSSatish Balay 
2036899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
20377adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
2038d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2039a30f8f8cSSatish Balay   if (oldmat->colmap) {
2040a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2041a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2042a30f8f8cSSatish Balay #else
20431302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
204452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20451302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2046a30f8f8cSSatish Balay #endif
2047a30f8f8cSSatish Balay   } else a->colmap = 0;
2048387bc808SHong Zhang 
2049a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20501302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
205152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20521302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2053a30f8f8cSSatish Balay   } else a->garray = 0;
2054a30f8f8cSSatish Balay 
2055a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
205652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2057a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
205852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
205982327fa8SHong Zhang 
206082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
206152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
206282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
206352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2064387bc808SHong Zhang 
2065387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
20661ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2067387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2068387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
20691ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
20701ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2071387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
20721ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
207352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
207452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
207552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
207652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
207752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2078387bc808SHong Zhang 
2079387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2080387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2081387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
208252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
208382327fa8SHong Zhang 
2084a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
208552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2086a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
208752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
20887adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2089a30f8f8cSSatish Balay   *newmat = mat;
2090a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2091a30f8f8cSSatish Balay }
2092a30f8f8cSSatish Balay 
2093a30f8f8cSSatish Balay #include "petscsys.h"
2094a30f8f8cSSatish Balay 
20954a2ae208SSatish Balay #undef __FUNCT__
20964a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2097a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2098a30f8f8cSSatish Balay {
2099a30f8f8cSSatish Balay   Mat            A;
21006849ba73SBarry Smith   PetscErrorCode ierr;
210113f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
210287828ca2SBarry Smith   PetscScalar    *vals,*buf;
2103a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2104a30f8f8cSSatish Balay   MPI_Status     status;
2105e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
210613f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21072fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21081302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21091302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21101302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
211113f74950SBarry Smith   int            fd;
2112a30f8f8cSSatish Balay 
2113a30f8f8cSSatish Balay   PetscFunctionBegin;
211477925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21158c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21168c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2117a30f8f8cSSatish Balay 
2118a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2119a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2120a30f8f8cSSatish Balay   if (!rank) {
2121b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2122a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2123552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2124a30f8f8cSSatish Balay     if (header[3] < 0) {
212529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2126a30f8f8cSSatish Balay     }
2127a30f8f8cSSatish Balay   }
2128a30f8f8cSSatish Balay 
2129a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2130a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2131a30f8f8cSSatish Balay 
213229bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2133a30f8f8cSSatish Balay 
2134a30f8f8cSSatish Balay   /*
2135a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2136a30f8f8cSSatish Balay      divisible by the blocksize
2137a30f8f8cSSatish Balay   */
2138a30f8f8cSSatish Balay   Mbs        = M/bs;
2139a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2140a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2141a30f8f8cSSatish Balay   else                  Mbs++;
2142a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21431e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2144a30f8f8cSSatish Balay   }
2145a30f8f8cSSatish Balay 
2146a30f8f8cSSatish Balay   /* determine ownership of all rows */
2147a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2148a30f8f8cSSatish Balay   m          = mbs*bs;
2149a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2150a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2151e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2152e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2153a30f8f8cSSatish Balay   rowners[0] = 0;
2154a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2155a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2156a30f8f8cSSatish Balay   rstart = rowners[rank];
2157a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2158a30f8f8cSSatish Balay 
2159a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21602fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay   if (!rank) {
21621302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2163a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2165a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2166a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2167a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2168a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2169a30f8f8cSSatish Balay   } else {
2170a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay   }
2172a30f8f8cSSatish Balay 
21730222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2174a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
21751302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
21761302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2177a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2178a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2179a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2180a30f8f8cSSatish Balay       }
2181a30f8f8cSSatish Balay     }
2182a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2183a30f8f8cSSatish Balay 
2184a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2185a30f8f8cSSatish Balay     maxnz = 0;
2186a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2187a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2188a30f8f8cSSatish Balay     }
21891302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay 
2191a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2192a30f8f8cSSatish Balay     nz     = procsnz[0];
21931302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay     mycols = ibuf;
2195a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2196a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2197a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2198a30f8f8cSSatish Balay 
2199a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2200a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2201a30f8f8cSSatish Balay       nz   = procsnz[i];
2202a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2203a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2204a30f8f8cSSatish Balay     }
2205a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2206a30f8f8cSSatish Balay     if (size != 1) {
2207a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2208a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2210a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2211a30f8f8cSSatish Balay     }
2212a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22130222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2214a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2215a30f8f8cSSatish Balay     nz = 0;
2216a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2217a30f8f8cSSatish Balay       nz += locrowlens[i];
2218a30f8f8cSSatish Balay     }
22191302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay     mycols = ibuf;
2221a30f8f8cSSatish Balay     /* receive message of column indices*/
2222a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2223a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
222429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2225a30f8f8cSSatish Balay   }
2226a30f8f8cSSatish Balay 
2227a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22281302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22301302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22311302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2232a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2233a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2234a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2235a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2236a30f8f8cSSatish Balay     dcount  = 0;
2237a30f8f8cSSatish Balay     odcount = 0;
2238a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2239a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2240a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22410222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2242a30f8f8cSSatish Balay         if (!mask[tmp]) {
2243a30f8f8cSSatish Balay           mask[tmp] = 1;
22440222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22450222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2246a30f8f8cSSatish Balay         }
2247a30f8f8cSSatish Balay       }
2248a30f8f8cSSatish Balay       rowcount++;
2249a30f8f8cSSatish Balay     }
2250a30f8f8cSSatish Balay 
22510222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22520222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2253a30f8f8cSSatish Balay 
2254a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2255a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2256a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2257a30f8f8cSSatish Balay   }
2258a30f8f8cSSatish Balay 
2259a30f8f8cSSatish Balay   /* create our matrix */
2260f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2261f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
226222191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
226317fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
226422191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay 
2266a30f8f8cSSatish Balay   if (!rank) {
226787828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2269a30f8f8cSSatish Balay     nz = procsnz[0];
2270a30f8f8cSSatish Balay     vals = buf;
2271a30f8f8cSSatish Balay     mycols = ibuf;
2272a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2273a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2274a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2275a30f8f8cSSatish Balay 
2276a30f8f8cSSatish Balay     /* insert into matrix */
2277a30f8f8cSSatish Balay     jj      = rstart*bs;
2278a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22797e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2280a30f8f8cSSatish Balay       mycols += locrowlens[i];
2281a30f8f8cSSatish Balay       vals   += locrowlens[i];
2282a30f8f8cSSatish Balay       jj++;
2283a30f8f8cSSatish Balay     }
22847e06b45fSHong Zhang 
2285a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2286a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2287a30f8f8cSSatish Balay       nz   = procsnz[i];
2288a30f8f8cSSatish Balay       vals = buf;
2289a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
22907adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2291a30f8f8cSSatish Balay     }
2292a30f8f8cSSatish Balay     /* the last proc */
2293a30f8f8cSSatish Balay     if (size != 1){
2294a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2295a30f8f8cSSatish Balay       vals = buf;
2296a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2297a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
22987adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2299a30f8f8cSSatish Balay     }
2300a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23017e06b45fSHong Zhang 
2302a30f8f8cSSatish Balay   } else {
2303a30f8f8cSSatish Balay     /* receive numeric values */
230487828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2305a30f8f8cSSatish Balay 
2306a30f8f8cSSatish Balay     /* receive message of values*/
2307a30f8f8cSSatish Balay     vals   = buf;
2308a30f8f8cSSatish Balay     mycols = ibuf;
23097adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2310a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
231129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2312a30f8f8cSSatish Balay 
2313a30f8f8cSSatish Balay     /* insert into matrix */
2314a30f8f8cSSatish Balay     jj      = rstart*bs;
2315a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2316a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2317a30f8f8cSSatish Balay       mycols += locrowlens[i];
2318a30f8f8cSSatish Balay       vals   += locrowlens[i];
2319a30f8f8cSSatish Balay       jj++;
2320a30f8f8cSSatish Balay     }
2321a30f8f8cSSatish Balay   }
23227e06b45fSHong Zhang 
2323a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2324a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2325a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2326a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2327a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2328a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2329a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2330a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233122191285SKris Buschelman   *newmat = A;
2332a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2333a30f8f8cSSatish Balay }
2334a30f8f8cSSatish Balay 
23354a2ae208SSatish Balay #undef __FUNCT__
23364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2337dcf5cc72SBarry Smith /*XXXXX@
2338a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2339a30f8f8cSSatish Balay 
2340a30f8f8cSSatish Balay    Input Parameters:
2341a30f8f8cSSatish Balay .  mat  - the matrix
2342a30f8f8cSSatish Balay .  fact - factor
2343a30f8f8cSSatish Balay 
2344a30f8f8cSSatish Balay    Collective on Mat
2345a30f8f8cSSatish Balay 
2346a30f8f8cSSatish Balay    Level: advanced
2347a30f8f8cSSatish Balay 
2348a30f8f8cSSatish Balay   Notes:
2349a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2350a30f8f8cSSatish Balay 
2351a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2352a30f8f8cSSatish Balay 
2353a30f8f8cSSatish Balay .seealso: MatSetOption()
2354dcf5cc72SBarry Smith @XXXXX*/
2355dcf5cc72SBarry Smith 
235624d5174aSHong Zhang 
23574a2ae208SSatish Balay #undef __FUNCT__
2358985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2359985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
236024d5174aSHong Zhang {
236124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2362f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2363ca54ac64SHong Zhang   PetscReal      atmp;
236487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2365dfbe8321SBarry Smith   PetscErrorCode ierr;
23661302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
23671302d50aSBarry Smith   PetscMPIInt    rank,size;
23681302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
236987828ca2SBarry Smith   PetscScalar    *va;
23708a1c53f2SBarry Smith   MatScalar      *ba;
2371f4c0e9e4SHong Zhang   MPI_Status     stat;
237224d5174aSHong Zhang 
237324d5174aSHong Zhang   PetscFunctionBegin;
2374985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2375985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
23761ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2377f4c0e9e4SHong Zhang 
23787adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
23797adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2380f4c0e9e4SHong Zhang 
2381d0f46423SBarry Smith   bs   = A->rmap->bs;
2382f4c0e9e4SHong Zhang   mbs  = a->mbs;
2383f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2384f4c0e9e4SHong Zhang   ba   = b->a;
2385f4c0e9e4SHong Zhang   bi   = b->i;
2386f4c0e9e4SHong Zhang   bj   = b->j;
2387f4c0e9e4SHong Zhang 
2388f4c0e9e4SHong Zhang   /* find ownerships */
2389d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2390f4c0e9e4SHong Zhang 
2391f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
239282502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2393ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2394f4c0e9e4SHong Zhang 
2395f4c0e9e4SHong Zhang   /* row_max for B */
2396b8475685SHong Zhang   if (rank != size-1){
2397f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2398f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2399f4c0e9e4SHong Zhang       brow  = bs*i;
2400f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2401f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2402f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2403ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
240404d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2405f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2406f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2407ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2408ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2409f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2410f4c0e9e4SHong Zhang           }
2411f4c0e9e4SHong Zhang         }
2412f4c0e9e4SHong Zhang         bj++;
2413f4c0e9e4SHong Zhang       }
2414f4c0e9e4SHong Zhang     }
2415f4c0e9e4SHong Zhang 
2416f4c0e9e4SHong Zhang     /* send values to its owners */
2417f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2418f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2419ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24207adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2421ca54ac64SHong Zhang     }
2422f4c0e9e4SHong Zhang   }
2423f4c0e9e4SHong Zhang 
2424f4c0e9e4SHong Zhang   /* receive values */
2425ca54ac64SHong Zhang   if (rank){
2426f4c0e9e4SHong Zhang     rvalues = work;
2427ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2428f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24297adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2430f4c0e9e4SHong Zhang       /* process values */
2431f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2432ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2433f4c0e9e4SHong Zhang       }
2434f4c0e9e4SHong Zhang     }
2435ca54ac64SHong Zhang   }
2436f4c0e9e4SHong Zhang 
24371ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2438ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
243924d5174aSHong Zhang   PetscFunctionReturn(0);
244024d5174aSHong Zhang }
24412798e883SHong Zhang 
24422798e883SHong Zhang #undef __FUNCT__
24432798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24441302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24452798e883SHong Zhang {
24462798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2447dfbe8321SBarry Smith   PetscErrorCode ierr;
2448d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2449fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2450ffe4fb16SHong Zhang   Vec            bb1;
2451ffe4fb16SHong Zhang 
2452ffe4fb16SHong Zhang   PetscFunctionBegin;
245377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2454b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2455ffe4fb16SHong Zhang 
2456a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
2457a2b30743SBarry Smith     ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2458a2b30743SBarry Smith     PetscFunctionReturn(0);
2459a2b30743SBarry Smith   }
2460a2b30743SBarry Smith 
2461ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2462ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2463ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2464ffe4fb16SHong Zhang       its--;
2465ffe4fb16SHong Zhang     }
2466ffe4fb16SHong Zhang 
2467ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2468ffe4fb16SHong Zhang     while (its--){
2469ffe4fb16SHong Zhang 
2470ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2471ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2472ffe4fb16SHong Zhang 
2473ffe4fb16SHong Zhang       /* copy xx into slvec0a */
24741ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
24751ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2476ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24771ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2478ffe4fb16SHong Zhang 
2479efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2480ffe4fb16SHong Zhang 
2481ffe4fb16SHong Zhang       /* copy bb into slvec1a */
24821ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
24831ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2484ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24851ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2486ffe4fb16SHong Zhang 
2487ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2488fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2489ffe4fb16SHong Zhang 
2490ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
24911ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
24921ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2493ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2494ffe4fb16SHong Zhang 
2495ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2496ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2497ffe4fb16SHong Zhang 
2498ffe4fb16SHong Zhang       /* local diagonal sweep */
2499ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2500ffe4fb16SHong Zhang     }
2501ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2502fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
2503fa22f6d0SBarry Smith     ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2504fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
2505fa22f6d0SBarry Smith     ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2506fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2507fa22f6d0SBarry Smith     Vec               xx1;
2508fa22f6d0SBarry Smith     PetscTruth        hasop;
250920f1ed55SBarry Smith     const PetscScalar *diag;
2510*887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
251120f1ed55SBarry Smith     PetscInt          i,n;
2512fa22f6d0SBarry Smith 
2513fa22f6d0SBarry Smith     if (!mat->xx1) {
2514fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2515fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2516fa22f6d0SBarry Smith     }
2517fa22f6d0SBarry Smith     xx1 = mat->xx1;
2518fa22f6d0SBarry Smith     bb1 = mat->bb1;
2519fa22f6d0SBarry Smith 
2520fa22f6d0SBarry Smith     ierr = (*mat->A->ops->relax)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2521fa22f6d0SBarry Smith 
2522fa22f6d0SBarry Smith     if (!mat->diag) {
2523effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2524fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2525fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2526fa22f6d0SBarry Smith     }
2527fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2528fa22f6d0SBarry Smith 
2529fa22f6d0SBarry Smith     if (hasop) {
2530fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2531*887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
253220f1ed55SBarry Smith     } else {
253320f1ed55SBarry Smith       /*
253420f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
253520f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2536*887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
253720f1ed55SBarry Smith       */
253820f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
253920f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
254020f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
254120f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
254220f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2543*887ee2caSBarry Smith       if (omega == 1.0) {
254420f1ed55SBarry Smith 	for (i=0; i<n; i++) {
254520f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
254620f1ed55SBarry Smith 	}
254720f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2548*887ee2caSBarry Smith       } else {
2549*887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2550*887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2551*887ee2caSBarry Smith 	}
2552*887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2553*887ee2caSBarry Smith       }
255420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
255520f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
255620f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
255720f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
255820f1ed55SBarry Smith     }
2559fa22f6d0SBarry Smith 
2560fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2561fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2562fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2563fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2564fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2565fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2566fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2567fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2568fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2569fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2570effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2571fa22f6d0SBarry Smith 
2572fa22f6d0SBarry Smith     /* local sweep */
2573effcda25SBarry Smith     ierr = (*mat->A->ops->relax)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2574fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2575ffe4fb16SHong Zhang   } else {
2576ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2577ffe4fb16SHong Zhang   }
2578ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2579ffe4fb16SHong Zhang }
2580ffe4fb16SHong Zhang 
2581ffe4fb16SHong Zhang #undef __FUNCT__
2582ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25831302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2584ffe4fb16SHong Zhang {
2585ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2586dfbe8321SBarry Smith   PetscErrorCode ierr;
25872798e883SHong Zhang   Vec            lvec1,bb1;
25882798e883SHong Zhang 
25892798e883SHong Zhang   PetscFunctionBegin;
259077431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2591b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25922798e883SHong Zhang 
2593c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25942798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2595bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25962798e883SHong Zhang       its--;
25972798e883SHong Zhang     }
25982798e883SHong Zhang 
25992798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26002798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26012798e883SHong Zhang     while (its--){
2602ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26032798e883SHong Zhang 
26042798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26052798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2606efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26072798e883SHong Zhang 
2608ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26092798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2610ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26112798e883SHong Zhang 
26122798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2613efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26142798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26152798e883SHong Zhang 
2616ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26172798e883SHong Zhang 
2618c14dc6b6SHong Zhang       /* diagonal sweep */
2619bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26202798e883SHong Zhang     }
26212798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26222798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2623c14dc6b6SHong Zhang   } else {
2624c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2625c14dc6b6SHong Zhang   }
26262798e883SHong Zhang   PetscFunctionReturn(0);
26272798e883SHong Zhang }
26282798e883SHong Zhang 
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