1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define CHUNKSIZE 10 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 57a30f8f8cSSatish Balay { \ 58a30f8f8cSSatish Balay \ 59a30f8f8cSSatish Balay brow = row/bs; \ 60a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 61a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 62a30f8f8cSSatish Balay bcol = col/bs; \ 63a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 64a30f8f8cSSatish Balay low = 0; high = nrow; \ 65a30f8f8cSSatish Balay while (high-low > 3) { \ 66a30f8f8cSSatish Balay t = (low+high)/2; \ 67a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 68a30f8f8cSSatish Balay else low = t; \ 69a30f8f8cSSatish Balay } \ 70a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 71a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 72a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 73a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 74a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 75a30f8f8cSSatish Balay else *bap = value; \ 76a30f8f8cSSatish Balay goto a_noinsert; \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 80085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 81421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 82a30f8f8cSSatish Balay N = nrow++ - 1; \ 83a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 84a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 85a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 86a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 87a30f8f8cSSatish Balay } \ 88a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 89a30f8f8cSSatish Balay rp[_i] = bcol; \ 90a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 91a30f8f8cSSatish Balay a_noinsert:; \ 92a30f8f8cSSatish Balay ailen[brow] = nrow; \ 93a30f8f8cSSatish Balay } 94e5e170daSBarry Smith 95a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 96a30f8f8cSSatish Balay { \ 97a30f8f8cSSatish Balay brow = row/bs; \ 98a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 99a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 100a30f8f8cSSatish Balay bcol = col/bs; \ 101a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 102a30f8f8cSSatish Balay low = 0; high = nrow; \ 103a30f8f8cSSatish Balay while (high-low > 3) { \ 104a30f8f8cSSatish Balay t = (low+high)/2; \ 105a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 106a30f8f8cSSatish Balay else low = t; \ 107a30f8f8cSSatish Balay } \ 108a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 109a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 110a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 111a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 112a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 113a30f8f8cSSatish Balay else *bap = value; \ 114a30f8f8cSSatish Balay goto b_noinsert; \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 118085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 119421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 120a30f8f8cSSatish Balay N = nrow++ - 1; \ 121a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 122a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 123a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay } \ 126a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 127a30f8f8cSSatish Balay rp[_i] = bcol; \ 128a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 129a30f8f8cSSatish Balay b_noinsert:; \ 130a30f8f8cSSatish Balay bilen[brow] = nrow; \ 131a30f8f8cSSatish Balay } 132a30f8f8cSSatish Balay 133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 134a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 135a30f8f8cSSatish Balay */ 1364a2ae208SSatish Balay #undef __FUNCT__ 137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 139a30f8f8cSSatish Balay { 140a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 141a30f8f8cSSatish Balay MatScalar value; 142b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 143dfbe8321SBarry Smith PetscErrorCode ierr; 1441302d50aSBarry Smith PetscInt i,j,row,col; 145d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 146d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 147d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 148a30f8f8cSSatish Balay 149a30f8f8cSSatish Balay /* Some Variables required in the macro */ 150a30f8f8cSSatish Balay Mat A = baij->A; 151a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1521302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 153a30f8f8cSSatish Balay MatScalar *aa=a->a; 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay Mat B = baij->B; 156a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1571302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 158a30f8f8cSSatish Balay MatScalar *ba=b->a; 159a30f8f8cSSatish Balay 1601302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1611302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 162a30f8f8cSSatish Balay MatScalar *ap,*bap; 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay /* for stash */ 165910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 166910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 167a30f8f8cSSatish Balay 168a30f8f8cSSatish Balay PetscFunctionBegin; 169a30f8f8cSSatish Balay 170a30f8f8cSSatish Balay if (!baij->donotstash){ 17159ffdab8SBarry Smith if (n > baij->n_loc) { 17259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith baij->n_loc = n; 17759ffdab8SBarry Smith } 17859ffdab8SBarry Smith in_loc = baij->in_loc; 17959ffdab8SBarry Smith v_loc = baij->v_loc; 180a30f8f8cSSatish Balay } 181a30f8f8cSSatish Balay 182a30f8f8cSSatish Balay for (i=0; i<m; i++) { 183a30f8f8cSSatish Balay if (im[i] < 0) continue; 1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 185d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 186a30f8f8cSSatish Balay #endif 187a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 188a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 189a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19001b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19101b2bd88SHong Zhang if (a->ignore_ltriangular){ 19201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19301b2bd88SHong Zhang } else { 1944e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19501b2bd88SHong Zhang } 19601b2bd88SHong Zhang } 197a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 198a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 199a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 200a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 201a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 202a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 203a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 204a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 206d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 207a30f8f8cSSatish Balay #endif 208a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 209a30f8f8cSSatish Balay if (mat->was_assembled) { 210a30f8f8cSSatish Balay if (!baij->colmap) { 211653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 214a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21571730473SSatish Balay col = col - 1; 216a30f8f8cSSatish Balay #else 21771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 218a30f8f8cSSatish Balay #endif 219a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 220a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 221a30f8f8cSSatish Balay col = in[j]; 222a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 223a30f8f8cSSatish Balay B = baij->B; 224a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 225a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 226a30f8f8cSSatish Balay ba=b->a; 22771730473SSatish Balay } else col += in[j]%bs; 228a30f8f8cSSatish Balay } else col = in[j]; 229a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 231a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } else { /* off processor entry */ 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 2610880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 28177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 2860880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2870880e062SHong Zhang if ((roworiented) && (n == 1)) { 288f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2890880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2910880e062SHong Zhang } else { /* Here a copy is required */ 2920880e062SHong Zhang if (roworiented) { 2930880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2940880e062SHong Zhang } else { 2950880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2960880e062SHong Zhang } 2970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2990880e062SHong Zhang *barray++ = *value++; 3000880e062SHong Zhang } 3010880e062SHong Zhang } 3020880e062SHong Zhang barray -=bs2; 3030880e062SHong Zhang } 3040880e062SHong Zhang 3050880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3060880e062SHong Zhang col = in[j] - cstart; 3070880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3080880e062SHong Zhang } 3090880e062SHong Zhang else if (in[j] < 0) continue; 3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 31177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3120880e062SHong Zhang #endif 3130880e062SHong Zhang else { 3140880e062SHong Zhang if (mat->was_assembled) { 3150880e062SHong Zhang if (!baij->colmap) { 316653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3170880e062SHong Zhang } 3180880e062SHong Zhang 3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3211302d50aSBarry Smith { PetscInt data; 3220880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3230880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3240880e062SHong Zhang } 3250880e062SHong Zhang #else 3260880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #endif 3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3300880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3310880e062SHong Zhang col = (col - 1)/bs; 3320880e062SHong Zhang #else 3330880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3340880e062SHong Zhang #endif 3350880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3360880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3370880e062SHong Zhang col = in[j]; 3380880e062SHong Zhang } 3390880e062SHong Zhang } 3400880e062SHong Zhang else col = in[j]; 341e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang } else { 3450880e062SHong Zhang if (!baij->donotstash) { 3460880e062SHong Zhang if (roworiented) { 3470880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3480880e062SHong Zhang } else { 3490880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang } 3540880e062SHong Zhang PetscFunctionReturn(0); 355a30f8f8cSSatish Balay } 356a30f8f8cSSatish Balay 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 360a30f8f8cSSatish Balay { 361f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3626849ba73SBarry Smith PetscErrorCode ierr; 363d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 364d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 365a30f8f8cSSatish Balay 366a30f8f8cSSatish Balay PetscFunctionBegin; 367a30f8f8cSSatish Balay for (i=0; i<m; i++) { 36897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 369d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 370a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 371a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 372a30f8f8cSSatish Balay for (j=0; j<n; j++) { 37397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 374d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 375a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 376a30f8f8cSSatish Balay col = idxn[j] - bscstart; 377c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 378a30f8f8cSSatish Balay } else { 379a30f8f8cSSatish Balay if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } 382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 383a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 384a30f8f8cSSatish Balay data --; 385a30f8f8cSSatish Balay #else 386a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 387a30f8f8cSSatish Balay #endif 388a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 389a30f8f8cSSatish Balay else { 390a30f8f8cSSatish Balay col = data + idxn[j]%bs; 391e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } else { 39629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay PetscFunctionReturn(0); 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay 4024a2ae208SSatish Balay #undef __FUNCT__ 4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 405a30f8f8cSSatish Balay { 406a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 407dfbe8321SBarry Smith PetscErrorCode ierr; 408a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 409a30f8f8cSSatish Balay 410a30f8f8cSSatish Balay PetscFunctionBegin; 411a30f8f8cSSatish Balay if (baij->size == 1) { 412a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 413a30f8f8cSSatish Balay } else { 414a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 415f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 418a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 419a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4207adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 422a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4230b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4240b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4250b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4260b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 427899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 428d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4290b8dc8d2SHong Zhang MatScalar *v; 4300b8dc8d2SHong Zhang 431d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 432d0f46423SBarry Smith rsum2 = rsum + mat->cmap->N; 433d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 467d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 4720b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 473a30f8f8cSSatish Balay } else { 47429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 475a30f8f8cSSatish Balay } 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay PetscFunctionReturn(0); 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay 4804a2ae208SSatish Balay #undef __FUNCT__ 4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 483a30f8f8cSSatish Balay { 484a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 485dfbe8321SBarry Smith PetscErrorCode ierr; 4861302d50aSBarry Smith PetscInt nstash,reallocs; 487a30f8f8cSSatish Balay InsertMode addv; 488a30f8f8cSSatish Balay 489a30f8f8cSSatish Balay PetscFunctionBegin; 490a30f8f8cSSatish Balay if (baij->donotstash) { 491a30f8f8cSSatish Balay PetscFunctionReturn(0); 492a30f8f8cSSatish Balay } 493a30f8f8cSSatish Balay 494a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4957adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 496a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 49729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 500a30f8f8cSSatish Balay 501d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5021e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 503a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay PetscFunctionReturn(0); 508a30f8f8cSSatish Balay } 509a30f8f8cSSatish Balay 5104a2ae208SSatish Balay #undef __FUNCT__ 5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 513a30f8f8cSSatish Balay { 514a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 515a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5166849ba73SBarry Smith PetscErrorCode ierr; 51713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 518e44c0bd4SBarry Smith PetscInt *row,*col; 519e44c0bd4SBarry Smith PetscTruth other_disassembled; 52013f74950SBarry Smith PetscMPIInt n; 521a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 522a30f8f8cSSatish Balay MatScalar *val; 523a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 524a30f8f8cSSatish Balay 52591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 526a30f8f8cSSatish Balay PetscFunctionBegin; 527a30f8f8cSSatish Balay 528a30f8f8cSSatish Balay if (!baij->donotstash) { 529a30f8f8cSSatish Balay while (1) { 530a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 531a30f8f8cSSatish Balay if (!flg) break; 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay for (i=0; i<n;) { 534a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 535a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 536a30f8f8cSSatish Balay if (j < n) ncols = j-i; 537a30f8f8cSSatish Balay else ncols = n-i; 538a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 539dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 540a30f8f8cSSatish Balay i = j; 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 544a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 545a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 546a30f8f8cSSatish Balay restore the original flags */ 547a30f8f8cSSatish Balay r1 = baij->roworiented; 548a30f8f8cSSatish Balay r2 = a->roworiented; 54991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 550a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 551a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 553a30f8f8cSSatish Balay while (1) { 554a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 555a30f8f8cSSatish Balay if (!flg) break; 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay for (i=0; i<n;) { 558a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 559a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 560a30f8f8cSSatish Balay if (j < n) ncols = j-i; 561a30f8f8cSSatish Balay else ncols = n-i; 562dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 563a30f8f8cSSatish Balay i = j; 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 573a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay 575a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 576a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 577a30f8f8cSSatish Balay /* 578a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 579a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 580a30f8f8cSSatish Balay */ 581a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5827adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 583a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 584c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay 588a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 590a30f8f8cSSatish Balay } 59191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 595a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 596a30f8f8cSSatish Balay baij->rowvalues = 0; 5975222a1afSHong Zhang 598a30f8f8cSSatish Balay PetscFunctionReturn(0); 599a30f8f8cSSatish Balay } 600a30f8f8cSSatish Balay 601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6024a2ae208SSatish Balay #undef __FUNCT__ 6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 605a30f8f8cSSatish Balay { 606a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 607dfbe8321SBarry Smith PetscErrorCode ierr; 608d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6091302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61032077d6dSBarry Smith PetscTruth iascii,isdraw; 611b0a32e0cSBarry Smith PetscViewer sviewer; 612f3ef73ceSBarry Smith PetscViewerFormat format; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay PetscFunctionBegin; 61532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 616fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 61732077d6dSBarry Smith if (iascii) { 618b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 619456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 620a30f8f8cSSatish Balay MatInfo info; 6217adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 622a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 624d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 625d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 62977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 630b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 633a30f8f8cSSatish Balay PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 638c1490034SHong Zhang PetscFunctionReturn(0); 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay if (isdraw) { 643b0a32e0cSBarry Smith PetscDraw draw; 644a30f8f8cSSatish Balay PetscTruth isnull; 645b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 646b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay if (size == 1) { 6507adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 651a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 652a30f8f8cSSatish Balay } else { 653a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 654a30f8f8cSSatish Balay Mat A; 65565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 657d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 658a30f8f8cSSatish Balay MatScalar *a; 659a30f8f8cSSatish Balay 660f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6617adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 662a30f8f8cSSatish Balay if (!rank) { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } else { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 668d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 66952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay /* copy over the A part */ 67265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6741302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 677e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 678a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 679a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 680e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 681a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 682dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 683a30f8f8cSSatish Balay col++; a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 693a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 698a30f8f8cSSatish Balay col++; a += bs; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay /* 706a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 707b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 708a30f8f8cSSatish Balay */ 709b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71065d70643SHong Zhang if (!rank) { 7117adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 713a30f8f8cSSatish Balay } 714b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay PetscFunctionReturn(0); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay 7204a2ae208SSatish Balay #undef __FUNCT__ 7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 723a30f8f8cSSatish Balay { 724dfbe8321SBarry Smith PetscErrorCode ierr; 72532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay PetscFunctionBegin; 72832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 729fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 730b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 731fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 733a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 7351302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay PetscFunctionReturn(0); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay 7404a2ae208SSatish Balay #undef __FUNCT__ 7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 743a30f8f8cSSatish Balay { 744a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 745dfbe8321SBarry Smith PetscErrorCode ierr; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay PetscFunctionBegin; 748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 749d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 750a30f8f8cSSatish Balay #endif 751a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 752a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7569c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 757a30f8f8cSSatish Balay #else 75805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #endif 76005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 761a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 762a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76340781036SHong Zhang if (baij->slvec0) { 76440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76640781036SHong Zhang } 76740781036SHong Zhang if (baij->slvec1) { 76840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 76940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77140781036SHong Zhang } 77240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 77305b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 776fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 777fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 778fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 779a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 78005b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 781a30f8f8cSSatish Balay #endif 78259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 784899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 786901853e0SKris Buschelman 787dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 788901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 789901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 792a30f8f8cSSatish Balay PetscFunctionReturn(0); 793a30f8f8cSSatish Balay } 794a30f8f8cSSatish Balay 7954a2ae208SSatish Balay #undef __FUNCT__ 796a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 797dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 798a9d4b620SHong Zhang { 799a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 800dfbe8321SBarry Smith PetscErrorCode ierr; 801d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 802fa22f6d0SBarry Smith PetscScalar *x,*from; 803a9d4b620SHong Zhang 804a9d4b620SHong Zhang PetscFunctionBegin; 805a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 806d0f46423SBarry Smith if (nt != A->cmap->n) { 807a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 808a9d4b620SHong Zhang } 809a9d4b620SHong Zhang 810a9d4b620SHong Zhang /* diagonal part */ 811a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 812fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 813a9d4b620SHong Zhang 814a9d4b620SHong Zhang /* subdiagonal part */ 815a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 816fc165ae2SBarry Smith 817a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8181ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8191ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 820a9d4b620SHong Zhang 821fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 822fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8231ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 824fc165ae2SBarry Smith 825fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 826ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827a9d4b620SHong Zhang /* supperdiagonal part */ 828a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 829a9d4b620SHong Zhang PetscFunctionReturn(0); 830a9d4b620SHong Zhang } 831a9d4b620SHong Zhang 832a9d4b620SHong Zhang #undef __FUNCT__ 83340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 835a30f8f8cSSatish Balay { 836a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 837dfbe8321SBarry Smith PetscErrorCode ierr; 8381302d50aSBarry Smith PetscInt nt; 839a30f8f8cSSatish Balay 840a30f8f8cSSatish Balay PetscFunctionBegin; 841a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 842d0f46423SBarry Smith if (nt != A->cmap->n) { 84329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 844a30f8f8cSSatish Balay } 845a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 846d0f46423SBarry Smith if (nt != A->rmap->N) { 84729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 848a30f8f8cSSatish Balay } 84965d70643SHong Zhang 850ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 851b941877fSHong Zhang /* do diagonal part */ 852b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 853b941877fSHong Zhang /* do supperdiagonal part */ 854ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 855b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 856b941877fSHong Zhang /* do subdiagonal part */ 857b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 858ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 859ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 86065d70643SHong Zhang 861a30f8f8cSSatish Balay PetscFunctionReturn(0); 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay 8644a2ae208SSatish Balay #undef __FUNCT__ 8654a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 866dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 867a30f8f8cSSatish Balay { 868de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 869dfbe8321SBarry Smith PetscErrorCode ierr; 870d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 871a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 872a9d4b620SHong Zhang 873a9d4b620SHong Zhang PetscFunctionBegin; 874a9d4b620SHong Zhang /* 8757adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 8767adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 877a9d4b620SHong Zhang */ 878a9d4b620SHong Zhang /* diagonal part */ 879a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 8802dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 881a9d4b620SHong Zhang 882a9d4b620SHong Zhang /* subdiagonal part */ 883a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 884a9d4b620SHong Zhang 885a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8861ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8871ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 888a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8891ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 890a9d4b620SHong Zhang 891ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8921ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 893ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894a9d4b620SHong Zhang 895a9d4b620SHong Zhang /* supperdiagonal part */ 896a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 897a9d4b620SHong Zhang 898a9d4b620SHong Zhang PetscFunctionReturn(0); 899a9d4b620SHong Zhang } 900a9d4b620SHong Zhang 901a9d4b620SHong Zhang #undef __FUNCT__ 902a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 903dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 904a9d4b620SHong Zhang { 905a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 906dfbe8321SBarry Smith PetscErrorCode ierr; 907a30f8f8cSSatish Balay 908a30f8f8cSSatish Balay PetscFunctionBegin; 909ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 910b941877fSHong Zhang /* do diagonal part */ 911b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 912b941877fSHong Zhang /* do supperdiagonal part */ 913ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 914de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 915de8b6608SHong Zhang 916b941877fSHong Zhang /* do subdiagonal part */ 917a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 918ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 919ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 920aa482183SHong Zhang 921a30f8f8cSSatish Balay PetscFunctionReturn(0); 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay 924a30f8f8cSSatish Balay /* 925a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 926a30f8f8cSSatish Balay diagonal block 927a30f8f8cSSatish Balay */ 9284a2ae208SSatish Balay #undef __FUNCT__ 9294a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 930dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 931a30f8f8cSSatish Balay { 932a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 933dfbe8321SBarry Smith PetscErrorCode ierr; 934a30f8f8cSSatish Balay 935a30f8f8cSSatish Balay PetscFunctionBegin; 936d0f46423SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 937a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 938a30f8f8cSSatish Balay PetscFunctionReturn(0); 939a30f8f8cSSatish Balay } 940a30f8f8cSSatish Balay 9414a2ae208SSatish Balay #undef __FUNCT__ 9424a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 943f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 944a30f8f8cSSatish Balay { 945a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 946dfbe8321SBarry Smith PetscErrorCode ierr; 947a30f8f8cSSatish Balay 948a30f8f8cSSatish Balay PetscFunctionBegin; 949f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 950f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 951a30f8f8cSSatish Balay PetscFunctionReturn(0); 952a30f8f8cSSatish Balay } 953a30f8f8cSSatish Balay 9544a2ae208SSatish Balay #undef __FUNCT__ 9554a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9561302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 957a30f8f8cSSatish Balay { 958d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 959d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 960d0d4cfc2SHong Zhang PetscErrorCode ierr; 961d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 962d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 963899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 964d0d4cfc2SHong Zhang 965a30f8f8cSSatish Balay PetscFunctionBegin; 9664eeb8337SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 967d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 968d0d4cfc2SHong Zhang 969d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 970d0d4cfc2SHong Zhang /* 971d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 972d0d4cfc2SHong Zhang */ 973d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 974d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 975d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 976d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 977d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 978d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 979d0d4cfc2SHong Zhang } 980d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 981d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 982d0d4cfc2SHong Zhang } 983d0d4cfc2SHong Zhang 984d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 985d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 986d0d4cfc2SHong Zhang 987d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 988d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 989d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 990d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 991d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 992d0d4cfc2SHong Zhang nztot = nzA + nzB; 993d0d4cfc2SHong Zhang 994d0d4cfc2SHong Zhang cmap = mat->garray; 995d0d4cfc2SHong Zhang if (v || idx) { 996d0d4cfc2SHong Zhang if (nztot) { 997d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 998d0d4cfc2SHong Zhang PetscInt imark = -1; 999d0d4cfc2SHong Zhang if (v) { 1000d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1001d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1002d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1003d0d4cfc2SHong Zhang else break; 1004d0d4cfc2SHong Zhang } 1005d0d4cfc2SHong Zhang imark = i; 1006d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1007d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1008d0d4cfc2SHong Zhang } 1009d0d4cfc2SHong Zhang if (idx) { 1010d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1011d0d4cfc2SHong Zhang if (imark > -1) { 1012d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1013d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1014d0d4cfc2SHong Zhang } 1015d0d4cfc2SHong Zhang } else { 1016d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1017d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1018d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1019d0d4cfc2SHong Zhang else break; 1020d0d4cfc2SHong Zhang } 1021d0d4cfc2SHong Zhang imark = i; 1022d0d4cfc2SHong Zhang } 1023d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1024d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1025d0d4cfc2SHong Zhang } 1026d0d4cfc2SHong Zhang } else { 1027d0d4cfc2SHong Zhang if (idx) *idx = 0; 1028d0d4cfc2SHong Zhang if (v) *v = 0; 1029d0d4cfc2SHong Zhang } 1030d0d4cfc2SHong Zhang } 1031d0d4cfc2SHong Zhang *nz = nztot; 1032d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1033d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1034a30f8f8cSSatish Balay PetscFunctionReturn(0); 1035a30f8f8cSSatish Balay } 1036a30f8f8cSSatish Balay 10374a2ae208SSatish Balay #undef __FUNCT__ 10384a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10391302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1040a30f8f8cSSatish Balay { 1041a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1042a30f8f8cSSatish Balay 1043a30f8f8cSSatish Balay PetscFunctionBegin; 1044abc0a331SBarry Smith if (!baij->getrowactive) { 1045abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1046a30f8f8cSSatish Balay } 1047a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1048a30f8f8cSSatish Balay PetscFunctionReturn(0); 1049a30f8f8cSSatish Balay } 1050a30f8f8cSSatish Balay 10514a2ae208SSatish Balay #undef __FUNCT__ 1052d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1053d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1054d0d4cfc2SHong Zhang { 1055d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1056d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1057d0d4cfc2SHong Zhang 1058d0d4cfc2SHong Zhang PetscFunctionBegin; 1059d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1060d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang #undef __FUNCT__ 1063d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1064d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1065d0d4cfc2SHong Zhang { 1066d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1067d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1068d0d4cfc2SHong Zhang 1069d0d4cfc2SHong Zhang PetscFunctionBegin; 1070d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1071d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1072d0d4cfc2SHong Zhang } 1073d0d4cfc2SHong Zhang 1074d0d4cfc2SHong Zhang #undef __FUNCT__ 107599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 107699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 107799cafbc1SBarry Smith { 107899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 107999cafbc1SBarry Smith PetscErrorCode ierr; 108099cafbc1SBarry Smith 108199cafbc1SBarry Smith PetscFunctionBegin; 108299cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 108399cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 108499cafbc1SBarry Smith PetscFunctionReturn(0); 108599cafbc1SBarry Smith } 108699cafbc1SBarry Smith 108799cafbc1SBarry Smith #undef __FUNCT__ 108899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 108999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 109099cafbc1SBarry Smith { 109199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 109299cafbc1SBarry Smith PetscErrorCode ierr; 109399cafbc1SBarry Smith 109499cafbc1SBarry Smith PetscFunctionBegin; 109599cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 109699cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 109799cafbc1SBarry Smith PetscFunctionReturn(0); 109899cafbc1SBarry Smith } 109999cafbc1SBarry Smith 110099cafbc1SBarry Smith #undef __FUNCT__ 11014a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1102dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1103a30f8f8cSSatish Balay { 1104a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1105dfbe8321SBarry Smith PetscErrorCode ierr; 1106a30f8f8cSSatish Balay 1107a30f8f8cSSatish Balay PetscFunctionBegin; 1108a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1109a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1110a30f8f8cSSatish Balay PetscFunctionReturn(0); 1111a30f8f8cSSatish Balay } 1112a30f8f8cSSatish Balay 11134a2ae208SSatish Balay #undef __FUNCT__ 11144a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1115dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1116a30f8f8cSSatish Balay { 1117a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1118a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1119dfbe8321SBarry Smith PetscErrorCode ierr; 1120a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1121a30f8f8cSSatish Balay 1122a30f8f8cSSatish Balay PetscFunctionBegin; 1123d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1124a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1125a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1126a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1127a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1128a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1129a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1130a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1131a30f8f8cSSatish Balay info->nz_used = isend[0]; 1132a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1133a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1134a30f8f8cSSatish Balay info->memory = isend[3]; 1135a30f8f8cSSatish Balay info->mallocs = isend[4]; 1136a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11377adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1139a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1140a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1141a30f8f8cSSatish Balay info->memory = irecv[3]; 1142a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1143a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11447adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1145a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1146a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1147a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1148a30f8f8cSSatish Balay info->memory = irecv[3]; 1149a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1150a30f8f8cSSatish Balay } else { 115177431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1152a30f8f8cSSatish Balay } 1153a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1154a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1155a30f8f8cSSatish Balay info->factor_mallocs = 0; 1156a30f8f8cSSatish Balay PetscFunctionReturn(0); 1157a30f8f8cSSatish Balay } 1158a30f8f8cSSatish Balay 11594a2ae208SSatish Balay #undef __FUNCT__ 11604a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11614e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1162a30f8f8cSSatish Balay { 1163a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1164d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1165dfbe8321SBarry Smith PetscErrorCode ierr; 1166a30f8f8cSSatish Balay 1167a30f8f8cSSatish Balay PetscFunctionBegin; 1168e98b92d7SKris Buschelman switch (op) { 1169512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1170e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 117128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1172a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1173e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 11744e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11754e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1176e98b92d7SKris Buschelman break; 1177e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 11784e0d8c25SBarry Smith a->roworiented = flg; 11794e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 11804e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1181e98b92d7SKris Buschelman break; 11824e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1183290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1184e98b92d7SKris Buschelman break; 1185e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 11864e0d8c25SBarry Smith a->donotstash = flg; 1187e98b92d7SKris Buschelman break; 1188e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 11894e0d8c25SBarry Smith a->ht_flag = flg; 1190e98b92d7SKris Buschelman break; 11919a4540c5SBarry Smith case MAT_HERMITIAN: 11924e0d8c25SBarry Smith if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 119377e54ba9SKris Buschelman case MAT_SYMMETRIC: 119477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 11959a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 11964e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1197290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 119877e54ba9SKris Buschelman break; 1199d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12004e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1201d0d4cfc2SHong Zhang break; 1202d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12034e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1204d0d4cfc2SHong Zhang break; 1205d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12064e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1207d0d4cfc2SHong Zhang break; 1208e98b92d7SKris Buschelman default: 1209ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1210a30f8f8cSSatish Balay } 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12144a2ae208SSatish Balay #undef __FUNCT__ 12158115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1216fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1217a30f8f8cSSatish Balay { 1218dfbe8321SBarry Smith PetscErrorCode ierr; 1219a30f8f8cSSatish Balay PetscFunctionBegin; 1220815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1221999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1222fc4dec0aSBarry Smith } 12238115998fSBarry Smith PetscFunctionReturn(0); 1224a30f8f8cSSatish Balay } 1225a30f8f8cSSatish Balay 12264a2ae208SSatish Balay #undef __FUNCT__ 12274a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1228dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1229a30f8f8cSSatish Balay { 1230a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1231a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1232dfbe8321SBarry Smith PetscErrorCode ierr; 12335e90f9d9SHong Zhang PetscInt nv,m,n; 1234b3bf805bSHong Zhang PetscTruth flg; 1235a30f8f8cSSatish Balay 1236a30f8f8cSSatish Balay PetscFunctionBegin; 1237a30f8f8cSSatish Balay if (ll != rr){ 1238b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1239b3bf805bSHong Zhang if (!flg) 124029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1241a30f8f8cSSatish Balay } 1242b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1243b3bf805bSHong Zhang 12445e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12455e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1246b3bf805bSHong Zhang 12475e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12485e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12495e90f9d9SHong Zhang 1250ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12515e90f9d9SHong Zhang 12525e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1253a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12545e90f9d9SHong Zhang 12555e90f9d9SHong Zhang /* scale the diagonal part */ 1256a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1257a30f8f8cSSatish Balay 12585e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1259ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1260a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay PetscFunctionReturn(0); 1262a30f8f8cSSatish Balay } 1263a30f8f8cSSatish Balay 12644a2ae208SSatish Balay #undef __FUNCT__ 12654a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1266dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1267a30f8f8cSSatish Balay { 1268f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1269dfbe8321SBarry Smith PetscErrorCode ierr; 1270a30f8f8cSSatish Balay 1271a30f8f8cSSatish Balay PetscFunctionBegin; 1272a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1273a30f8f8cSSatish Balay PetscFunctionReturn(0); 1274a30f8f8cSSatish Balay } 1275a30f8f8cSSatish Balay 12766849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1277a30f8f8cSSatish Balay 12784a2ae208SSatish Balay #undef __FUNCT__ 12794a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1280dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1281a30f8f8cSSatish Balay { 1282a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1283a30f8f8cSSatish Balay Mat a,b,c,d; 1284a30f8f8cSSatish Balay PetscTruth flg; 1285dfbe8321SBarry Smith PetscErrorCode ierr; 1286a30f8f8cSSatish Balay 1287a30f8f8cSSatish Balay PetscFunctionBegin; 1288a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1289a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1290a30f8f8cSSatish Balay 1291a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1292abc0a331SBarry Smith if (flg) { 1293a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1294a30f8f8cSSatish Balay } 12957adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1296a30f8f8cSSatish Balay PetscFunctionReturn(0); 1297a30f8f8cSSatish Balay } 1298a30f8f8cSSatish Balay 12994a2ae208SSatish Balay #undef __FUNCT__ 13003c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13013c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13023c896bc6SHong Zhang { 13033c896bc6SHong Zhang PetscErrorCode ierr; 13043c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13053c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13063c896bc6SHong Zhang 13073c896bc6SHong Zhang PetscFunctionBegin; 13083c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13093c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1310d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13113c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1312d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13133c896bc6SHong Zhang } else { 13143c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13153c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13163c896bc6SHong Zhang } 13173c896bc6SHong Zhang PetscFunctionReturn(0); 13183c896bc6SHong Zhang } 13193c896bc6SHong Zhang 13203c896bc6SHong Zhang #undef __FUNCT__ 13214a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1322dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1323273d9f13SBarry Smith { 1324dfbe8321SBarry Smith PetscErrorCode ierr; 1325273d9f13SBarry Smith 1326273d9f13SBarry Smith PetscFunctionBegin; 1327db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1328273d9f13SBarry Smith PetscFunctionReturn(0); 1329273d9f13SBarry Smith } 1330a5e6ed63SBarry Smith 13314fe895cdSHong Zhang #include "petscblaslapack.h" 13324fe895cdSHong Zhang #undef __FUNCT__ 13334fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13344fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13354fe895cdSHong Zhang { 13364fe895cdSHong Zhang PetscErrorCode ierr; 13374fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13384fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13394fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13404fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13414fe895cdSHong Zhang 13424fe895cdSHong Zhang PetscFunctionBegin; 13434fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13444fe895cdSHong Zhang PetscScalar alpha = a; 13454fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13464fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13470805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13484fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13494fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13504fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13510805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13524fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13534fe895cdSHong Zhang } else { 1354d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13554fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1356d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 13574fe895cdSHong Zhang } 13584fe895cdSHong Zhang PetscFunctionReturn(0); 13594fe895cdSHong Zhang } 13604fe895cdSHong Zhang 1361a5e6ed63SBarry Smith #undef __FUNCT__ 1362a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13631302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1364a5e6ed63SBarry Smith { 13656849ba73SBarry Smith PetscErrorCode ierr; 13661302d50aSBarry Smith PetscInt i; 1367a5e6ed63SBarry Smith PetscTruth flg; 1368a5e6ed63SBarry Smith 13696849ba73SBarry Smith PetscFunctionBegin; 1370a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1371a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1372a5e6ed63SBarry Smith if (!flg) { 13731302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1374a5e6ed63SBarry Smith } 1375a5e6ed63SBarry Smith } 1376a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1377a5e6ed63SBarry Smith PetscFunctionReturn(0); 1378a5e6ed63SBarry Smith } 1379a5e6ed63SBarry Smith 1380a5e6ed63SBarry Smith 1381a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1382a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1383a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1384a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1385a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1386a9d4b620SHong Zhang MatMult_MPISBAIJ, 138797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1388431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1389431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1390a30f8f8cSSatish Balay 0, 1391a30f8f8cSSatish Balay 0, 1392a30f8f8cSSatish Balay 0, 139397304618SKris Buschelman /*10*/ 0, 1394a30f8f8cSSatish Balay 0, 1395a30f8f8cSSatish Balay 0, 13962798e883SHong Zhang MatRelax_MPISBAIJ, 1397a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 139897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1399a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1400a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1401a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1402a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 140397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1404a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1405a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1406a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1407d519adbfSMatthew Knepley /*24*/ 0, 1408a30f8f8cSSatish Balay 0, 1409a30f8f8cSSatish Balay 0, 1410a30f8f8cSSatish Balay 0, 1411a30f8f8cSSatish Balay 0, 1412d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1413b5df2d14SHong Zhang 0, 1414a30f8f8cSSatish Balay 0, 1415a30f8f8cSSatish Balay 0, 1416a30f8f8cSSatish Balay 0, 1417d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1418a30f8f8cSSatish Balay 0, 1419a30f8f8cSSatish Balay 0, 1420a30f8f8cSSatish Balay 0, 1421a30f8f8cSSatish Balay 0, 1422d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1423a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1424d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1425a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14263c896bc6SHong Zhang MatCopy_MPISBAIJ, 1427d519adbfSMatthew Knepley /*44*/ 0, 1428a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1429a30f8f8cSSatish Balay 0, 1430a30f8f8cSSatish Balay 0, 1431a30f8f8cSSatish Balay 0, 1432d519adbfSMatthew Knepley /*49*/ 0, 1433a30f8f8cSSatish Balay 0, 1434a30f8f8cSSatish Balay 0, 1435a30f8f8cSSatish Balay 0, 1436a30f8f8cSSatish Balay 0, 1437d519adbfSMatthew Knepley /*54*/ 0, 1438a30f8f8cSSatish Balay 0, 1439a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1440a30f8f8cSSatish Balay 0, 1441a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1442d519adbfSMatthew Knepley /*59*/ 0, 1443a30f8f8cSSatish Balay 0, 1444a30f8f8cSSatish Balay 0, 1445357abbc8SBarry Smith 0, 144624d5174aSHong Zhang 0, 1447d519adbfSMatthew Knepley /*64*/ 0, 144824d5174aSHong Zhang 0, 144924d5174aSHong Zhang 0, 145024d5174aSHong Zhang 0, 145124d5174aSHong Zhang 0, 1452d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 145324d5174aSHong Zhang 0, 145497304618SKris Buschelman 0, 145597304618SKris Buschelman 0, 145697304618SKris Buschelman 0, 1457d519adbfSMatthew Knepley /*74*/ 0, 145897304618SKris Buschelman 0, 145997304618SKris Buschelman 0, 146097304618SKris Buschelman 0, 146197304618SKris Buschelman 0, 1462d519adbfSMatthew Knepley /*79*/ 0, 146397304618SKris Buschelman 0, 146497304618SKris Buschelman 0, 146597304618SKris Buschelman 0, 1466865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1467d519adbfSMatthew Knepley /*84*/ 0, 1468865e5f61SKris Buschelman 0, 1469865e5f61SKris Buschelman 0, 1470865e5f61SKris Buschelman 0, 1471865e5f61SKris Buschelman 0, 1472d519adbfSMatthew Knepley /*89*/ 0, 1473865e5f61SKris Buschelman 0, 1474865e5f61SKris Buschelman 0, 1475865e5f61SKris Buschelman 0, 1476865e5f61SKris Buschelman 0, 1477d519adbfSMatthew Knepley /*94*/ 0, 1478865e5f61SKris Buschelman 0, 1479865e5f61SKris Buschelman 0, 148099cafbc1SBarry Smith 0, 148199cafbc1SBarry Smith 0, 1482d519adbfSMatthew Knepley /*99*/ 0, 148399cafbc1SBarry Smith 0, 148499cafbc1SBarry Smith 0, 148599cafbc1SBarry Smith 0, 148699cafbc1SBarry Smith 0, 1487d519adbfSMatthew Knepley /*104*/0, 148899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1489d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1490d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1491d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 149299cafbc1SBarry Smith }; 1493a30f8f8cSSatish Balay 1494a30f8f8cSSatish Balay 1495a30f8f8cSSatish Balay EXTERN_C_BEGIN 14964a2ae208SSatish Balay #undef __FUNCT__ 14974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1498be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1499a30f8f8cSSatish Balay { 1500a30f8f8cSSatish Balay PetscFunctionBegin; 1501a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1502a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1503a30f8f8cSSatish Balay PetscFunctionReturn(0); 1504a30f8f8cSSatish Balay } 1505a30f8f8cSSatish Balay EXTERN_C_END 1506a30f8f8cSSatish Balay 1507273d9f13SBarry Smith EXTERN_C_BEGIN 15084a2ae208SSatish Balay #undef __FUNCT__ 1509a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1510be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1511a23d5eceSKris Buschelman { 1512a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1513dfbe8321SBarry Smith PetscErrorCode ierr; 1514db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1515a23d5eceSKris Buschelman 1516a23d5eceSKris Buschelman PetscFunctionBegin; 1517db4efbfdSBarry Smith if (bs < 0){ 15187adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1519db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15208c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1521db4efbfdSBarry Smith bs = PetscAbs(bs); 1522db4efbfdSBarry Smith } 1523db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 1524db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1525db4efbfdSBarry Smith } 1526db4efbfdSBarry Smith bs = newbs; 1527a23d5eceSKris Buschelman 1528a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1529a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 153077431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 153177431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1532899cda47SBarry Smith 1533d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 1534d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 1535d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 1536899cda47SBarry Smith 1537a23d5eceSKris Buschelman if (d_nnz) { 1538d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 153977431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1540a23d5eceSKris Buschelman } 1541a23d5eceSKris Buschelman } 1542a23d5eceSKris Buschelman if (o_nnz) { 1543d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 154477431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1545a23d5eceSKris Buschelman } 1546a23d5eceSKris Buschelman } 1547a23d5eceSKris Buschelman 1548a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1549d0f46423SBarry Smith mbs = B->rmap->n/bs; 1550d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1551d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1552d0f46423SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1553a23d5eceSKris Buschelman } 1554a23d5eceSKris Buschelman 1555d0f46423SBarry Smith B->rmap->bs = bs; 1556a23d5eceSKris Buschelman b->bs2 = bs*bs; 1557a23d5eceSKris Buschelman b->mbs = mbs; 1558a23d5eceSKris Buschelman b->nbs = mbs; 1559a23d5eceSKris Buschelman b->Mbs = Mbs; 1560a23d5eceSKris Buschelman b->Nbs = Mbs; 1561a23d5eceSKris Buschelman 1562a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1563d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1564a23d5eceSKris Buschelman } 1565d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1566d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1567a23d5eceSKris Buschelman 1568d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1569d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1570a23d5eceSKris Buschelman 1571526dfc15SBarry Smith if (!B->preallocated) { 1572f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1573d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 15749c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 157552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1576f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1577d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 15784aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 157952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1580a23d5eceSKris Buschelman /* build cache for off array entries formed */ 15817adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1582526dfc15SBarry Smith } 1583a23d5eceSKris Buschelman 1584526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1585526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1586526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1587a23d5eceSKris Buschelman PetscFunctionReturn(0); 1588a23d5eceSKris Buschelman } 1589a23d5eceSKris Buschelman EXTERN_C_END 1590a23d5eceSKris Buschelman 15915c9eb25fSBarry Smith EXTERN_C_BEGIN 1592611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1593611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1594611f576cSBarry Smith #endif 1595611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 15965c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1597611f576cSBarry Smith #endif 1598b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1599b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1600b5e56a35SBarry Smith #endif 16015c9eb25fSBarry Smith EXTERN_C_END 16025c9eb25fSBarry Smith 16030bad9183SKris Buschelman /*MC 1604fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16050bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16060bad9183SKris Buschelman 16070bad9183SKris Buschelman Options Database Keys: 16080bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16090bad9183SKris Buschelman 16100bad9183SKris Buschelman Level: beginner 16110bad9183SKris Buschelman 16120bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16130bad9183SKris Buschelman M*/ 16140bad9183SKris Buschelman 1615a23d5eceSKris Buschelman EXTERN_C_BEGIN 1616a23d5eceSKris Buschelman #undef __FUNCT__ 16174a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1618be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1619b5df2d14SHong Zhang { 1620b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1621dfbe8321SBarry Smith PetscErrorCode ierr; 1622b5df2d14SHong Zhang PetscTruth flg; 1623b5df2d14SHong Zhang 1624b5df2d14SHong Zhang PetscFunctionBegin; 1625b5df2d14SHong Zhang 162638f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1627b0a32e0cSBarry Smith B->data = (void*)b; 1628b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1629b5df2d14SHong Zhang 1630b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1631b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1632b5df2d14SHong Zhang B->mapping = 0; 1633b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1634b5df2d14SHong Zhang 1635b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16367adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16377adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1638b5df2d14SHong Zhang 1639b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1640899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1641b5df2d14SHong Zhang 1642b5df2d14SHong Zhang /* build cache for off array entries formed */ 16437adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1644b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1645b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1646b5df2d14SHong Zhang b->garray = PETSC_NULL; 1647b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1648b5df2d14SHong Zhang 1649b5df2d14SHong Zhang /* stuff used in block assembly */ 1650b5df2d14SHong Zhang b->barray = 0; 1651b5df2d14SHong Zhang 1652b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1653b5df2d14SHong Zhang b->lvec = 0; 1654b5df2d14SHong Zhang b->Mvctx = 0; 165540781036SHong Zhang b->slvec0 = 0; 165640781036SHong Zhang b->slvec0b = 0; 165740781036SHong Zhang b->slvec1 = 0; 165840781036SHong Zhang b->slvec1a = 0; 165940781036SHong Zhang b->slvec1b = 0; 166040781036SHong Zhang b->sMvctx = 0; 1661b5df2d14SHong Zhang 1662b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1663b5df2d14SHong Zhang b->rowindices = 0; 1664b5df2d14SHong Zhang b->rowvalues = 0; 1665b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1666b5df2d14SHong Zhang 1667b5df2d14SHong Zhang /* hash table stuff */ 1668b5df2d14SHong Zhang b->ht = 0; 1669b5df2d14SHong Zhang b->hd = 0; 1670b5df2d14SHong Zhang b->ht_size = 0; 1671b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1672b5df2d14SHong Zhang b->ht_fact = 0; 1673b5df2d14SHong Zhang b->ht_total_ct = 0; 1674b5df2d14SHong Zhang b->ht_insert_ct = 0; 1675b5df2d14SHong Zhang 167659ffdab8SBarry Smith b->in_loc = 0; 167759ffdab8SBarry Smith b->v_loc = 0; 167859ffdab8SBarry Smith b->n_loc = 0; 16797adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 16808c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1681b5df2d14SHong Zhang if (flg) { 1682f6275e2eSBarry Smith PetscReal fact = 1.39; 16834e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 16848c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1685b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1686b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 16871e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1688b5df2d14SHong Zhang } 16898c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 16908c07d4e3SBarry Smith 1691b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1692b5e56a35SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_pastix_C", 1693b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1694b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1695b5e56a35SBarry Smith #endif 1696611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 16975c9eb25fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_mumps_C", 16985c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 16995c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1700611f576cSBarry Smith #endif 1701611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 17025c9eb25fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mpisbaij_spooles_C", 17035c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17045c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1705611f576cSBarry Smith #endif 1706b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1707b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1708b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1709b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1710b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1711b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1712b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1713b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1714b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1715a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1716a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1717a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 171823ce1328SBarry Smith B->symmetric = PETSC_TRUE; 171923ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 172023ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 172123ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 172217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1723b5df2d14SHong Zhang PetscFunctionReturn(0); 1724b5df2d14SHong Zhang } 1725273d9f13SBarry Smith EXTERN_C_END 1726b5df2d14SHong Zhang 1727209238afSKris Buschelman /*MC 1728002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1729209238afSKris Buschelman 1730209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1731209238afSKris Buschelman and MATMPISBAIJ otherwise. 1732209238afSKris Buschelman 1733209238afSKris Buschelman Options Database Keys: 1734209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1735209238afSKris Buschelman 1736209238afSKris Buschelman Level: beginner 1737209238afSKris Buschelman 1738209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1739209238afSKris Buschelman M*/ 1740209238afSKris Buschelman 1741209238afSKris Buschelman EXTERN_C_BEGIN 1742209238afSKris Buschelman #undef __FUNCT__ 1743209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1744be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1745dfbe8321SBarry Smith { 17466849ba73SBarry Smith PetscErrorCode ierr; 17471302d50aSBarry Smith PetscMPIInt size; 1748209238afSKris Buschelman 1749209238afSKris Buschelman PetscFunctionBegin; 17507adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1751209238afSKris Buschelman if (size == 1) { 1752209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1753209238afSKris Buschelman } else { 1754209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1755209238afSKris Buschelman } 1756209238afSKris Buschelman PetscFunctionReturn(0); 1757209238afSKris Buschelman } 1758209238afSKris Buschelman EXTERN_C_END 1759209238afSKris Buschelman 17604a2ae208SSatish Balay #undef __FUNCT__ 17614a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1762b5df2d14SHong Zhang /*@C 1763b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1764b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1765b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1766b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1767b5df2d14SHong Zhang 1768b5df2d14SHong Zhang Collective on Mat 1769b5df2d14SHong Zhang 1770b5df2d14SHong Zhang Input Parameters: 1771b5df2d14SHong Zhang + A - the matrix 1772b5df2d14SHong Zhang . bs - size of blockk 1773b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1774b5df2d14SHong Zhang submatrix (same for all local rows) 1775b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17766d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17776d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17786d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1779b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1780b5df2d14SHong Zhang submatrix (same for all local rows). 1781b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1782b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1783b5df2d14SHong Zhang each block row) or PETSC_NULL. 1784b5df2d14SHong Zhang 1785b5df2d14SHong Zhang 1786b5df2d14SHong Zhang Options Database Keys: 1787b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1788b5df2d14SHong Zhang block calculations (much slower) 1789b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1790b5df2d14SHong Zhang 1791b5df2d14SHong Zhang Notes: 1792b5df2d14SHong Zhang 1793b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1794b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1795b5df2d14SHong Zhang 179649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 179749a6f317SBarry Smith 1798b5df2d14SHong Zhang Storage Information: 1799b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1800b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1801b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1802b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1803b5df2d14SHong Zhang 1804b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1805b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1806b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1807b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1808b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1809b5df2d14SHong Zhang 1810aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1811aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1812aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1813aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1814aa95bbe8SBarry Smith 1815b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1816b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1817b5df2d14SHong Zhang 1818b5df2d14SHong Zhang .vb 1819b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1820b5df2d14SHong Zhang ------------------- 1821b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1822b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1823b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1824b5df2d14SHong Zhang ------------------- 1825b5df2d14SHong Zhang .ve 1826b5df2d14SHong Zhang 1827b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1828b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18296d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18306d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1831b5df2d14SHong Zhang 18326d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18336d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1834b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1835b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1836b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1837b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1838b5df2d14SHong Zhang matrices. 1839b5df2d14SHong Zhang 1840b5df2d14SHong Zhang Level: intermediate 1841b5df2d14SHong Zhang 1842b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1843b5df2d14SHong Zhang 1844b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1845b5df2d14SHong Zhang @*/ 1846be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1847b5df2d14SHong Zhang { 18481302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1849b5df2d14SHong Zhang 1850b5df2d14SHong Zhang PetscFunctionBegin; 1851a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1852a23d5eceSKris Buschelman if (f) { 1853a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1854b5df2d14SHong Zhang } 1855b5df2d14SHong Zhang PetscFunctionReturn(0); 1856b5df2d14SHong Zhang } 1857b5df2d14SHong Zhang 18584a2ae208SSatish Balay #undef __FUNCT__ 18594a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1860a30f8f8cSSatish Balay /*@C 1861a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1862a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1863a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1864a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1865a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1866a30f8f8cSSatish Balay 1867a30f8f8cSSatish Balay Collective on MPI_Comm 1868a30f8f8cSSatish Balay 1869a30f8f8cSSatish Balay Input Parameters: 1870a30f8f8cSSatish Balay + comm - MPI communicator 1871a30f8f8cSSatish Balay . bs - size of blockk 1872a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1873a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1874a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1875a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1876a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1877a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1878a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1879a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1880a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1881a30f8f8cSSatish Balay submatrix (same for all local rows) 1882a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18836d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18846d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18856d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1886a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1887a30f8f8cSSatish Balay submatrix (same for all local rows). 1888a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1889a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1890a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1891a30f8f8cSSatish Balay 1892a30f8f8cSSatish Balay Output Parameter: 1893a30f8f8cSSatish Balay . A - the matrix 1894a30f8f8cSSatish Balay 1895a30f8f8cSSatish Balay Options Database Keys: 1896a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1897a30f8f8cSSatish Balay block calculations (much slower) 1898a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1899a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1900a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1901a30f8f8cSSatish Balay 1902175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1903ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1904175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1905175b88e8SBarry Smith 1906a30f8f8cSSatish Balay Notes: 1907d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19086d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1909d1be2dadSMatthew Knepley 1910a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1911a30f8f8cSSatish Balay (possibly both). 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1914a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1915a30f8f8cSSatish Balay 191649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 191749a6f317SBarry Smith 1918a30f8f8cSSatish Balay Storage Information: 1919a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1920a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1921a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1922a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1923a30f8f8cSSatish Balay 1924a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1925a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1926a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1927a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1928a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1929a30f8f8cSSatish Balay 1930a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1931a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1932a30f8f8cSSatish Balay 1933a30f8f8cSSatish Balay .vb 1934a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1935a30f8f8cSSatish Balay ------------------- 1936a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1937a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1938a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1939a30f8f8cSSatish Balay ------------------- 1940a30f8f8cSSatish Balay .ve 1941a30f8f8cSSatish Balay 1942a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1943a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19446d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19456d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1946a30f8f8cSSatish Balay 19476d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19486d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1949a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1950a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1951a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1952a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1953a30f8f8cSSatish Balay matrices. 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay Level: intermediate 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1958a30f8f8cSSatish Balay 1959a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1960a30f8f8cSSatish Balay @*/ 1961a30f8f8cSSatish Balay 1962be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1963a30f8f8cSSatish Balay { 19646849ba73SBarry Smith PetscErrorCode ierr; 19651302d50aSBarry Smith PetscMPIInt size; 1966a30f8f8cSSatish Balay 1967a30f8f8cSSatish Balay PetscFunctionBegin; 1968f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1969f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1970273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1971273d9f13SBarry Smith if (size > 1) { 1972b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1973b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1974273d9f13SBarry Smith } else { 1975273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1976273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1977273d9f13SBarry Smith } 1978a30f8f8cSSatish Balay PetscFunctionReturn(0); 1979a30f8f8cSSatish Balay } 1980a30f8f8cSSatish Balay 1981a30f8f8cSSatish Balay 19824a2ae208SSatish Balay #undef __FUNCT__ 19834a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 19846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1985a30f8f8cSSatish Balay { 1986a30f8f8cSSatish Balay Mat mat; 1987a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1988dfbe8321SBarry Smith PetscErrorCode ierr; 1989d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 1990387bc808SHong Zhang PetscScalar *array; 1991a30f8f8cSSatish Balay 1992a30f8f8cSSatish Balay PetscFunctionBegin; 1993a30f8f8cSSatish Balay *newmat = 0; 19947adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 1995d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 19967adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 19971d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1998d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr); 1999d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr); 2000e1b6402fSHong Zhang 200182327fa8SHong Zhang mat->factor = matin->factor; 2002273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 200382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20047fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20057fff6886SHong Zhang 2006b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2007a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2008a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2009a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2010a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2011a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2012a30f8f8cSSatish Balay 2013899cda47SBarry Smith 2014a30f8f8cSSatish Balay a->size = oldmat->size; 2015a30f8f8cSSatish Balay a->rank = oldmat->rank; 2016a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2017a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2018a30f8f8cSSatish Balay a->rowindices = 0; 2019a30f8f8cSSatish Balay a->rowvalues = 0; 2020a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2021a30f8f8cSSatish Balay a->barray = 0; 2022899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2023899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2024899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2025899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2026a30f8f8cSSatish Balay 2027a30f8f8cSSatish Balay /* hash table stuff */ 2028a30f8f8cSSatish Balay a->ht = 0; 2029a30f8f8cSSatish Balay a->hd = 0; 2030a30f8f8cSSatish Balay a->ht_size = 0; 2031a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2032a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2033a30f8f8cSSatish Balay a->ht_total_ct = 0; 2034a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2035a30f8f8cSSatish Balay 2036899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 20377adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 2038d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2039a30f8f8cSSatish Balay if (oldmat->colmap) { 2040a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2041a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2042a30f8f8cSSatish Balay #else 20431302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 204452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 20451302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2046a30f8f8cSSatish Balay #endif 2047a30f8f8cSSatish Balay } else a->colmap = 0; 2048387bc808SHong Zhang 2049a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 20501302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 205152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 20521302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2053a30f8f8cSSatish Balay } else a->garray = 0; 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 205652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2057a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 205852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 205982327fa8SHong Zhang 206082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 206152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 206282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 206352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2064387bc808SHong Zhang 2065387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 20661ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2067387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2068387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 20691ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 20701ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2071387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 20721ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 207352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 207452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 207552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 207652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 207752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2078387bc808SHong Zhang 2079387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2080387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2081387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 208252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 208382327fa8SHong Zhang 2084a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 208552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2086a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 208752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 20887adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2089a30f8f8cSSatish Balay *newmat = mat; 2090a30f8f8cSSatish Balay PetscFunctionReturn(0); 2091a30f8f8cSSatish Balay } 2092a30f8f8cSSatish Balay 2093a30f8f8cSSatish Balay #include "petscsys.h" 2094a30f8f8cSSatish Balay 20954a2ae208SSatish Balay #undef __FUNCT__ 20964a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2097a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2098a30f8f8cSSatish Balay { 2099a30f8f8cSSatish Balay Mat A; 21006849ba73SBarry Smith PetscErrorCode ierr; 210113f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 210287828ca2SBarry Smith PetscScalar *vals,*buf; 2103a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2104a30f8f8cSSatish Balay MPI_Status status; 2105e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 210613f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21072fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21081302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21091302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21101302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 211113f74950SBarry Smith int fd; 2112a30f8f8cSSatish Balay 2113a30f8f8cSSatish Balay PetscFunctionBegin; 211477925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21158c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21168c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2117a30f8f8cSSatish Balay 2118a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2119a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2120a30f8f8cSSatish Balay if (!rank) { 2121b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2123552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2124a30f8f8cSSatish Balay if (header[3] < 0) { 212529bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2126a30f8f8cSSatish Balay } 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay 2129a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2130a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2131a30f8f8cSSatish Balay 213229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2133a30f8f8cSSatish Balay 2134a30f8f8cSSatish Balay /* 2135a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2136a30f8f8cSSatish Balay divisible by the blocksize 2137a30f8f8cSSatish Balay */ 2138a30f8f8cSSatish Balay Mbs = M/bs; 2139a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2140a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2141a30f8f8cSSatish Balay else Mbs++; 2142a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21431e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2144a30f8f8cSSatish Balay } 2145a30f8f8cSSatish Balay 2146a30f8f8cSSatish Balay /* determine ownership of all rows */ 2147a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2148a30f8f8cSSatish Balay m = mbs*bs; 2149a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2150a30f8f8cSSatish Balay browners = rowners + size + 1; 2151e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2152e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay rowners[0] = 0; 2154a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2155a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2156a30f8f8cSSatish Balay rstart = rowners[rank]; 2157a30f8f8cSSatish Balay rend = rowners[rank+1]; 2158a30f8f8cSSatish Balay 2159a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 21602fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay if (!rank) { 21621302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2165a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2166a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2167a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2168a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2169a30f8f8cSSatish Balay } else { 2170a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay } 2172a30f8f8cSSatish Balay 21730222edb1SHong Zhang if (!rank) { /* procs[0] */ 2174a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 21751302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 21761302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2177a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2178a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2179a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2180a30f8f8cSSatish Balay } 2181a30f8f8cSSatish Balay } 2182a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay 2184a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2185a30f8f8cSSatish Balay maxnz = 0; 2186a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2187a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2188a30f8f8cSSatish Balay } 21891302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay 2191a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2192a30f8f8cSSatish Balay nz = procsnz[0]; 21931302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay mycols = ibuf; 2195a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2196a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2198a30f8f8cSSatish Balay 2199a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2200a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2201a30f8f8cSSatish Balay nz = procsnz[i]; 2202a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2203a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay } 2205a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2206a30f8f8cSSatish Balay if (size != 1) { 2207a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2208a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2210a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay } 2212a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22130222edb1SHong Zhang } else { /* procs[i], i>0 */ 2214a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2215a30f8f8cSSatish Balay nz = 0; 2216a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2217a30f8f8cSSatish Balay nz += locrowlens[i]; 2218a30f8f8cSSatish Balay } 22191302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay mycols = ibuf; 2221a30f8f8cSSatish Balay /* receive message of column indices*/ 2222a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2223a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 222429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22281302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22301302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22311302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2232a30f8f8cSSatish Balay masked1 = mask + Mbs; 2233a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2234a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2235a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2236a30f8f8cSSatish Balay dcount = 0; 2237a30f8f8cSSatish Balay odcount = 0; 2238a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2239a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2240a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22410222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2242a30f8f8cSSatish Balay if (!mask[tmp]) { 2243a30f8f8cSSatish Balay mask[tmp] = 1; 22440222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22450222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2246a30f8f8cSSatish Balay } 2247a30f8f8cSSatish Balay } 2248a30f8f8cSSatish Balay rowcount++; 2249a30f8f8cSSatish Balay } 2250a30f8f8cSSatish Balay 22510222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22520222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2253a30f8f8cSSatish Balay 2254a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2255a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2256a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2257a30f8f8cSSatish Balay } 2258a30f8f8cSSatish Balay 2259a30f8f8cSSatish Balay /* create our matrix */ 2260f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2261f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 226222191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 226317fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 226422191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay 2266a30f8f8cSSatish Balay if (!rank) { 226787828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2269a30f8f8cSSatish Balay nz = procsnz[0]; 2270a30f8f8cSSatish Balay vals = buf; 2271a30f8f8cSSatish Balay mycols = ibuf; 2272a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2273a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2275a30f8f8cSSatish Balay 2276a30f8f8cSSatish Balay /* insert into matrix */ 2277a30f8f8cSSatish Balay jj = rstart*bs; 2278a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22797e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2280a30f8f8cSSatish Balay mycols += locrowlens[i]; 2281a30f8f8cSSatish Balay vals += locrowlens[i]; 2282a30f8f8cSSatish Balay jj++; 2283a30f8f8cSSatish Balay } 22847e06b45fSHong Zhang 2285a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2286a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2287a30f8f8cSSatish Balay nz = procsnz[i]; 2288a30f8f8cSSatish Balay vals = buf; 2289a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 22907adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2291a30f8f8cSSatish Balay } 2292a30f8f8cSSatish Balay /* the last proc */ 2293a30f8f8cSSatish Balay if (size != 1){ 2294a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2295a30f8f8cSSatish Balay vals = buf; 2296a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2297a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 22987adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2299a30f8f8cSSatish Balay } 2300a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23017e06b45fSHong Zhang 2302a30f8f8cSSatish Balay } else { 2303a30f8f8cSSatish Balay /* receive numeric values */ 230487828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2305a30f8f8cSSatish Balay 2306a30f8f8cSSatish Balay /* receive message of values*/ 2307a30f8f8cSSatish Balay vals = buf; 2308a30f8f8cSSatish Balay mycols = ibuf; 23097adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2310a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 231129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay /* insert into matrix */ 2314a30f8f8cSSatish Balay jj = rstart*bs; 2315a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2316a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2317a30f8f8cSSatish Balay mycols += locrowlens[i]; 2318a30f8f8cSSatish Balay vals += locrowlens[i]; 2319a30f8f8cSSatish Balay jj++; 2320a30f8f8cSSatish Balay } 2321a30f8f8cSSatish Balay } 23227e06b45fSHong Zhang 2323a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2324a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2325a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2327a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2328a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2329a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2330a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233122191285SKris Buschelman *newmat = A; 2332a30f8f8cSSatish Balay PetscFunctionReturn(0); 2333a30f8f8cSSatish Balay } 2334a30f8f8cSSatish Balay 23354a2ae208SSatish Balay #undef __FUNCT__ 23364a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2337dcf5cc72SBarry Smith /*XXXXX@ 2338a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2339a30f8f8cSSatish Balay 2340a30f8f8cSSatish Balay Input Parameters: 2341a30f8f8cSSatish Balay . mat - the matrix 2342a30f8f8cSSatish Balay . fact - factor 2343a30f8f8cSSatish Balay 2344a30f8f8cSSatish Balay Collective on Mat 2345a30f8f8cSSatish Balay 2346a30f8f8cSSatish Balay Level: advanced 2347a30f8f8cSSatish Balay 2348a30f8f8cSSatish Balay Notes: 2349a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2350a30f8f8cSSatish Balay 2351a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2352a30f8f8cSSatish Balay 2353a30f8f8cSSatish Balay .seealso: MatSetOption() 2354dcf5cc72SBarry Smith @XXXXX*/ 2355dcf5cc72SBarry Smith 235624d5174aSHong Zhang 23574a2ae208SSatish Balay #undef __FUNCT__ 2358985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2359985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 236024d5174aSHong Zhang { 236124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2362f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2363ca54ac64SHong Zhang PetscReal atmp; 236487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2365dfbe8321SBarry Smith PetscErrorCode ierr; 23661302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 23671302d50aSBarry Smith PetscMPIInt rank,size; 23681302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 236987828ca2SBarry Smith PetscScalar *va; 23708a1c53f2SBarry Smith MatScalar *ba; 2371f4c0e9e4SHong Zhang MPI_Status stat; 237224d5174aSHong Zhang 237324d5174aSHong Zhang PetscFunctionBegin; 2374985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2375985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 23761ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2377f4c0e9e4SHong Zhang 23787adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 23797adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2380f4c0e9e4SHong Zhang 2381d0f46423SBarry Smith bs = A->rmap->bs; 2382f4c0e9e4SHong Zhang mbs = a->mbs; 2383f4c0e9e4SHong Zhang Mbs = a->Mbs; 2384f4c0e9e4SHong Zhang ba = b->a; 2385f4c0e9e4SHong Zhang bi = b->i; 2386f4c0e9e4SHong Zhang bj = b->j; 2387f4c0e9e4SHong Zhang 2388f4c0e9e4SHong Zhang /* find ownerships */ 2389d0f46423SBarry Smith rowners_bs = A->rmap->range; 2390f4c0e9e4SHong Zhang 2391f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 239282502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2393ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2394f4c0e9e4SHong Zhang 2395f4c0e9e4SHong Zhang /* row_max for B */ 2396b8475685SHong Zhang if (rank != size-1){ 2397f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2398f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2399f4c0e9e4SHong Zhang brow = bs*i; 2400f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2401f4c0e9e4SHong Zhang bcol = bs*(*bj); 2402f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2403ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 240404d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2405f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2406f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2407ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2408ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2409f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2410f4c0e9e4SHong Zhang } 2411f4c0e9e4SHong Zhang } 2412f4c0e9e4SHong Zhang bj++; 2413f4c0e9e4SHong Zhang } 2414f4c0e9e4SHong Zhang } 2415f4c0e9e4SHong Zhang 2416f4c0e9e4SHong Zhang /* send values to its owners */ 2417f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2418f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2419ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24207adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2421ca54ac64SHong Zhang } 2422f4c0e9e4SHong Zhang } 2423f4c0e9e4SHong Zhang 2424f4c0e9e4SHong Zhang /* receive values */ 2425ca54ac64SHong Zhang if (rank){ 2426f4c0e9e4SHong Zhang rvalues = work; 2427ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2428f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24297adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2430f4c0e9e4SHong Zhang /* process values */ 2431f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2432ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2433f4c0e9e4SHong Zhang } 2434f4c0e9e4SHong Zhang } 2435ca54ac64SHong Zhang } 2436f4c0e9e4SHong Zhang 24371ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2438ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 243924d5174aSHong Zhang PetscFunctionReturn(0); 244024d5174aSHong Zhang } 24412798e883SHong Zhang 24422798e883SHong Zhang #undef __FUNCT__ 24432798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24441302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24452798e883SHong Zhang { 24462798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2447dfbe8321SBarry Smith PetscErrorCode ierr; 2448d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2449fa22f6d0SBarry Smith PetscScalar *x,*b,*ptr,*from; 2450ffe4fb16SHong Zhang Vec bb1; 2451ffe4fb16SHong Zhang 2452ffe4fb16SHong Zhang PetscFunctionBegin; 245377431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2454b75cf396SBarry Smith if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2455ffe4fb16SHong Zhang 2456a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 2457a2b30743SBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2458a2b30743SBarry Smith PetscFunctionReturn(0); 2459a2b30743SBarry Smith } 2460a2b30743SBarry Smith 2461ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2462ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2463ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2464ffe4fb16SHong Zhang its--; 2465ffe4fb16SHong Zhang } 2466ffe4fb16SHong Zhang 2467ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2468ffe4fb16SHong Zhang while (its--){ 2469ffe4fb16SHong Zhang 2470ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2471ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2472ffe4fb16SHong Zhang 2473ffe4fb16SHong Zhang /* copy xx into slvec0a */ 24741ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 24751ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2476ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24771ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2478ffe4fb16SHong Zhang 2479efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2480ffe4fb16SHong Zhang 2481ffe4fb16SHong Zhang /* copy bb into slvec1a */ 24821ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 24831ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2484ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24851ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2486ffe4fb16SHong Zhang 2487ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2488fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2489ffe4fb16SHong Zhang 2490ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 24911ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 24921ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2493ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2494ffe4fb16SHong Zhang 2495ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2496ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2497ffe4fb16SHong Zhang 2498ffe4fb16SHong Zhang /* local diagonal sweep */ 2499ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2500ffe4fb16SHong Zhang } 2501ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2502fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 2503fa22f6d0SBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2504fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 2505fa22f6d0SBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2506fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2507fa22f6d0SBarry Smith Vec xx1; 2508fa22f6d0SBarry Smith PetscTruth hasop; 250920f1ed55SBarry Smith const PetscScalar *diag; 2510*887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 251120f1ed55SBarry Smith PetscInt i,n; 2512fa22f6d0SBarry Smith 2513fa22f6d0SBarry Smith if (!mat->xx1) { 2514fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2515fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2516fa22f6d0SBarry Smith } 2517fa22f6d0SBarry Smith xx1 = mat->xx1; 2518fa22f6d0SBarry Smith bb1 = mat->bb1; 2519fa22f6d0SBarry Smith 2520fa22f6d0SBarry Smith ierr = (*mat->A->ops->relax)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2521fa22f6d0SBarry Smith 2522fa22f6d0SBarry Smith if (!mat->diag) { 2523effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2524fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2525fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2526fa22f6d0SBarry Smith } 2527fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2528fa22f6d0SBarry Smith 2529fa22f6d0SBarry Smith if (hasop) { 2530fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2531*887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 253220f1ed55SBarry Smith } else { 253320f1ed55SBarry Smith /* 253420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 253520f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2536*887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 253720f1ed55SBarry Smith */ 253820f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 253920f1ed55SBarry Smith ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 254020f1ed55SBarry Smith ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 254120f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 254220f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2543*887ee2caSBarry Smith if (omega == 1.0) { 254420f1ed55SBarry Smith for (i=0; i<n; i++) { 254520f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 254620f1ed55SBarry Smith } 254720f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2548*887ee2caSBarry Smith } else { 2549*887ee2caSBarry Smith for (i=0; i<n; i++) { 2550*887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2551*887ee2caSBarry Smith } 2552*887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2553*887ee2caSBarry Smith } 255420f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 255520f1ed55SBarry Smith ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 255620f1ed55SBarry Smith ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 255720f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 255820f1ed55SBarry Smith } 2559fa22f6d0SBarry Smith 2560fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2561fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2562fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2563fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2564fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2565fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2566fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2567fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2568fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2569fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2570effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2571fa22f6d0SBarry Smith 2572fa22f6d0SBarry Smith /* local sweep */ 2573effcda25SBarry Smith ierr = (*mat->A->ops->relax)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2574fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2575ffe4fb16SHong Zhang } else { 2576ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2577ffe4fb16SHong Zhang } 2578ffe4fb16SHong Zhang PetscFunctionReturn(0); 2579ffe4fb16SHong Zhang } 2580ffe4fb16SHong Zhang 2581ffe4fb16SHong Zhang #undef __FUNCT__ 2582ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25831302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2584ffe4fb16SHong Zhang { 2585ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2586dfbe8321SBarry Smith PetscErrorCode ierr; 25872798e883SHong Zhang Vec lvec1,bb1; 25882798e883SHong Zhang 25892798e883SHong Zhang PetscFunctionBegin; 259077431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2591b75cf396SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25922798e883SHong Zhang 2593c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25942798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2595bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25962798e883SHong Zhang its--; 25972798e883SHong Zhang } 25982798e883SHong Zhang 25992798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26002798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26012798e883SHong Zhang while (its--){ 2602ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26032798e883SHong Zhang 26042798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26052798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2606efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26072798e883SHong Zhang 2608ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26092798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2610ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26112798e883SHong Zhang 26122798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2613efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26142798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26152798e883SHong Zhang 2616ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26172798e883SHong Zhang 2618c14dc6b6SHong Zhang /* diagonal sweep */ 2619bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26202798e883SHong Zhang } 26212798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26222798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2623c14dc6b6SHong Zhang } else { 2624c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2625c14dc6b6SHong Zhang } 26262798e883SHong Zhang PetscFunctionReturn(0); 26272798e883SHong Zhang } 26282798e883SHong Zhang 2629