xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 888c827cec923cebb7f4d355e4d985c1818c0baa)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237a30f8f8cSSatish Balay   a_noinsert:; \
238a30f8f8cSSatish Balay     ailen[brow] = nrow; \
239a8f51744SPierre Jolivet   } while (0)
240e5e170daSBarry Smith 
241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
242a8f51744SPierre Jolivet   do { \
243a30f8f8cSSatish Balay     brow = row / bs; \
2449371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2459371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2469371c9d4SSatish Balay     rmax = bimax[brow]; \
2479371c9d4SSatish Balay     nrow = bilen[brow]; \
248a30f8f8cSSatish Balay     bcol = col / bs; \
2499371c9d4SSatish Balay     ridx = row % bs; \
2509371c9d4SSatish Balay     cidx = col % bs; \
2519371c9d4SSatish Balay     low  = 0; \
2529371c9d4SSatish Balay     high = nrow; \
253a30f8f8cSSatish Balay     while (high - low > 3) { \
254a30f8f8cSSatish Balay       t = (low + high) / 2; \
255a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
256a30f8f8cSSatish Balay       else low = t; \
257a30f8f8cSSatish Balay     } \
258a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
259a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
260a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
261a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
262a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
263a30f8f8cSSatish Balay         else *bap = value; \
264a30f8f8cSSatish Balay         goto b_noinsert; \
265a30f8f8cSSatish Balay       } \
266a30f8f8cSSatish Balay     } \
267a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2685f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
269fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
270a30f8f8cSSatish Balay     N = nrow++ - 1; \
271a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2729566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
275a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
276a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
277a30f8f8cSSatish Balay   b_noinsert:; \
278a30f8f8cSSatish Balay     bilen[brow] = nrow; \
279a8f51744SPierre Jolivet   } while (0)
280a30f8f8cSSatish Balay 
281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
282da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
283a30f8f8cSSatish Balay */
28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
285d71ae5a4SJacob Faibussowitsch {
286a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
287a30f8f8cSSatish Balay   MatScalar     value;
288ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2891302d50aSBarry Smith   PetscInt      i, j, row, col;
290d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
291d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
292d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
293a30f8f8cSSatish Balay 
294a30f8f8cSSatish Balay   /* Some Variables required in the macro */
295a30f8f8cSSatish Balay   Mat           A     = baij->A;
29657508eceSPierre Jolivet   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)A->data;
2971302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
298a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
299a30f8f8cSSatish Balay 
300a30f8f8cSSatish Balay   Mat          B     = baij->B;
30157508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
3021302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
303a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
304a30f8f8cSSatish Balay 
3051302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3061302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
307a30f8f8cSSatish Balay   MatScalar *ap, *bap;
308a30f8f8cSSatish Balay 
309a30f8f8cSSatish Balay   /* for stash */
3100298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3110298fd71SBarry Smith   MatScalar *v_loc = NULL;
312a30f8f8cSSatish Balay 
313a30f8f8cSSatish Balay   PetscFunctionBegin;
314a30f8f8cSSatish Balay   if (!baij->donotstash) {
31559ffdab8SBarry Smith     if (n > baij->n_loc) {
3169566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3179566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3189566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32026fbe8dcSKarl Rupp 
32159ffdab8SBarry Smith       baij->n_loc = n;
32259ffdab8SBarry Smith     }
32359ffdab8SBarry Smith     in_loc = baij->in_loc;
32459ffdab8SBarry Smith     v_loc  = baij->v_loc;
325a30f8f8cSSatish Balay   }
326a30f8f8cSSatish Balay 
327a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
328a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3295f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
330a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
331a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
332a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33301b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
33401b2bd88SHong Zhang           if (a->ignore_ltriangular) {
33501b2bd88SHong Zhang             continue; /* ignore lower triangular blocks */
33626fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33701b2bd88SHong Zhang         }
338a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
339a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3409371c9d4SSatish Balay           brow = row / bs;
3419371c9d4SSatish Balay           bcol = col / bs;
342a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
343db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
344db4deed7SKarl Rupp           else value = v[i + j * m];
345d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3469566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
347f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
348f7d195e4SLawrence Mitchell           continue;
349f7d195e4SLawrence Mitchell         } else {
350f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
351f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
352a30f8f8cSSatish Balay           if (mat->was_assembled) {
35348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
354a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
355eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35671730473SSatish Balay             col = col - 1;
357a30f8f8cSSatish Balay #else
35871730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
359a30f8f8cSSatish Balay #endif
360f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) {
3619566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
362a30f8f8cSSatish Balay               col = in[j];
363a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
364a30f8f8cSSatish Balay               B     = baij->B;
36557508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
3669371c9d4SSatish Balay               bimax = b->imax;
3679371c9d4SSatish Balay               bi    = b->i;
3689371c9d4SSatish Balay               bilen = b->ilen;
3699371c9d4SSatish Balay               bj    = b->j;
370a30f8f8cSSatish Balay               ba    = b->a;
37171730473SSatish Balay             } else col += in[j] % bs;
372a30f8f8cSSatish Balay           } else col = in[j];
373db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
374db4deed7SKarl Rupp           else value = v[i + j * m];
375d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3769566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
377a30f8f8cSSatish Balay         }
378a30f8f8cSSatish Balay       }
379a30f8f8cSSatish Balay     } else { /* off processor entry */
3805f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
381a30f8f8cSSatish Balay       if (!baij->donotstash) {
3825080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
383a30f8f8cSSatish Balay         n_loc          = 0;
384a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
385f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
386a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
387a30f8f8cSSatish Balay           if (roworiented) {
388a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
389a30f8f8cSSatish Balay           } else {
390a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
391a30f8f8cSSatish Balay           }
392a30f8f8cSSatish Balay           n_loc++;
393a30f8f8cSSatish Balay         }
3949566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
395a30f8f8cSSatish Balay       }
396a30f8f8cSSatish Balay     }
397a30f8f8cSSatish Balay   }
3983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
399a30f8f8cSSatish Balay }
400a30f8f8cSSatish Balay 
401d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
402d71ae5a4SJacob Faibussowitsch {
40336bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40436bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40536bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40636bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40736bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
40836bd2089SBarry Smith   const PetscScalar *value       = v;
40936bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
41036bd2089SBarry Smith 
41136bd2089SBarry Smith   PetscFunctionBegin;
41236bd2089SBarry Smith   if (col < row) {
4133ba16761SJacob Faibussowitsch     if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
41536bd2089SBarry Smith   }
41636bd2089SBarry Smith   rp    = aj + ai[row];
41736bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
41836bd2089SBarry Smith   rmax  = imax[row];
41936bd2089SBarry Smith   nrow  = ailen[row];
42036bd2089SBarry Smith   value = v;
42136bd2089SBarry Smith   low   = 0;
42236bd2089SBarry Smith   high  = nrow;
42336bd2089SBarry Smith 
42436bd2089SBarry Smith   while (high - low > 7) {
42536bd2089SBarry Smith     t = (low + high) / 2;
42636bd2089SBarry Smith     if (rp[t] > col) high = t;
42736bd2089SBarry Smith     else low = t;
42836bd2089SBarry Smith   }
42936bd2089SBarry Smith   for (i = low; i < high; i++) {
43036bd2089SBarry Smith     if (rp[i] > col) break;
43136bd2089SBarry Smith     if (rp[i] == col) {
43236bd2089SBarry Smith       bap = ap + bs2 * i;
43336bd2089SBarry Smith       if (roworiented) {
43436bd2089SBarry Smith         if (is == ADD_VALUES) {
43536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
436ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43736bd2089SBarry Smith           }
43836bd2089SBarry Smith         } else {
43936bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
440ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44136bd2089SBarry Smith           }
44236bd2089SBarry Smith         }
44336bd2089SBarry Smith       } else {
44436bd2089SBarry Smith         if (is == ADD_VALUES) {
44536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
446ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44736bd2089SBarry Smith           }
44836bd2089SBarry Smith         } else {
44936bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
450ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45136bd2089SBarry Smith           }
45236bd2089SBarry Smith         }
45336bd2089SBarry Smith       }
45436bd2089SBarry Smith       goto noinsert2;
45536bd2089SBarry Smith     }
45636bd2089SBarry Smith   }
45736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4585f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
45936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4609371c9d4SSatish Balay   N = nrow++ - 1;
4619371c9d4SSatish Balay   high++;
46236bd2089SBarry Smith   /* shift up all the later entries in this row */
4639566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4649566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46536bd2089SBarry Smith   rp[i] = col;
46636bd2089SBarry Smith   bap   = ap + bs2 * i;
46736bd2089SBarry Smith   if (roworiented) {
46836bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
469ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
47036bd2089SBarry Smith     }
47136bd2089SBarry Smith   } else {
47236bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
473ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47436bd2089SBarry Smith     }
47536bd2089SBarry Smith   }
47636bd2089SBarry Smith noinsert2:;
47736bd2089SBarry Smith   ailen[row] = nrow;
4783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47936bd2089SBarry Smith }
48036bd2089SBarry Smith 
48136bd2089SBarry Smith /*
48236bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48336bd2089SBarry Smith */
484d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
485d71ae5a4SJacob Faibussowitsch {
48636bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48736bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
48836bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
48936bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
49036bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49136bd2089SBarry Smith   const PetscScalar *value       = v;
49236bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49336bd2089SBarry Smith 
49436bd2089SBarry Smith   PetscFunctionBegin;
49536bd2089SBarry Smith   rp    = aj + ai[row];
49636bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49736bd2089SBarry Smith   rmax  = imax[row];
49836bd2089SBarry Smith   nrow  = ailen[row];
49936bd2089SBarry Smith   low   = 0;
50036bd2089SBarry Smith   high  = nrow;
50136bd2089SBarry Smith   value = v;
50236bd2089SBarry Smith   while (high - low > 7) {
50336bd2089SBarry Smith     t = (low + high) / 2;
50436bd2089SBarry Smith     if (rp[t] > col) high = t;
50536bd2089SBarry Smith     else low = t;
50636bd2089SBarry Smith   }
50736bd2089SBarry Smith   for (i = low; i < high; i++) {
50836bd2089SBarry Smith     if (rp[i] > col) break;
50936bd2089SBarry Smith     if (rp[i] == col) {
51036bd2089SBarry Smith       bap = ap + bs2 * i;
51136bd2089SBarry Smith       if (roworiented) {
51236bd2089SBarry Smith         if (is == ADD_VALUES) {
51336bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
514ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51536bd2089SBarry Smith           }
51636bd2089SBarry Smith         } else {
51736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
518ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
51936bd2089SBarry Smith           }
52036bd2089SBarry Smith         }
52136bd2089SBarry Smith       } else {
52236bd2089SBarry Smith         if (is == ADD_VALUES) {
52336bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
524ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52536bd2089SBarry Smith             bap += bs;
52636bd2089SBarry Smith           }
52736bd2089SBarry Smith         } else {
52836bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
529ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
53036bd2089SBarry Smith             bap += bs;
53136bd2089SBarry Smith           }
53236bd2089SBarry Smith         }
53336bd2089SBarry Smith       }
53436bd2089SBarry Smith       goto noinsert2;
53536bd2089SBarry Smith     }
53636bd2089SBarry Smith   }
53736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5385f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
53936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5409371c9d4SSatish Balay   N = nrow++ - 1;
5419371c9d4SSatish Balay   high++;
54236bd2089SBarry Smith   /* shift up all the later entries in this row */
5439566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5449566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54536bd2089SBarry Smith   rp[i] = col;
54636bd2089SBarry Smith   bap   = ap + bs2 * i;
54736bd2089SBarry Smith   if (roworiented) {
54836bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
549ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
55036bd2089SBarry Smith     }
55136bd2089SBarry Smith   } else {
55236bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
553ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55436bd2089SBarry Smith     }
55536bd2089SBarry Smith   }
55636bd2089SBarry Smith noinsert2:;
55736bd2089SBarry Smith   ailen[row] = nrow;
5583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55936bd2089SBarry Smith }
56036bd2089SBarry Smith 
56136bd2089SBarry Smith /*
56236bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56336bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56436bd2089SBarry Smith */
56566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
566d71ae5a4SJacob Faibussowitsch {
5670880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
568f15d580aSBarry Smith   const MatScalar *value;
569f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
570ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
571899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
572476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
573476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5740880e062SHong Zhang 
575a30f8f8cSSatish Balay   PetscFunctionBegin;
5760880e062SHong Zhang   if (!barray) {
5779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5780880e062SHong Zhang     baij->barray = barray;
5790880e062SHong Zhang   }
5800880e062SHong Zhang 
5810880e062SHong Zhang   if (roworiented) {
5820880e062SHong Zhang     stepval = (n - 1) * bs;
5830880e062SHong Zhang   } else {
5840880e062SHong Zhang     stepval = (m - 1) * bs;
5850880e062SHong Zhang   }
5860880e062SHong Zhang   for (i = 0; i < m; i++) {
5870880e062SHong Zhang     if (im[i] < 0) continue;
5886bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5890880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5900880e062SHong Zhang       row = im[i] - rstart;
5910880e062SHong Zhang       for (j = 0; j < n; j++) {
592f3f98c53SJed Brown         if (im[i] > in[j]) {
593f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
594e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
595f3f98c53SJed Brown         }
5960880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5970880e062SHong Zhang         if ((roworiented) && (n == 1)) {
598f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
5990880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
600f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6010880e062SHong Zhang         } else { /* Here a copy is required */
6020880e062SHong Zhang           if (roworiented) {
6030880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6040880e062SHong Zhang           } else {
6050880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6060880e062SHong Zhang           }
6070880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
608ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6090880e062SHong Zhang           }
6100880e062SHong Zhang           barray -= bs2;
6110880e062SHong Zhang         }
6120880e062SHong Zhang 
6130880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6140880e062SHong Zhang           col = in[j] - cstart;
6159566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
616f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
617f7d195e4SLawrence Mitchell           continue;
618f7d195e4SLawrence Mitchell         } else {
619f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6200880e062SHong Zhang           if (mat->was_assembled) {
62148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6220880e062SHong Zhang 
6230880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
624eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
625b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
6260880e062SHong Zhang #else
627b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
6280880e062SHong Zhang #endif
629f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
6309566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6310880e062SHong Zhang               col = in[j];
6320880e062SHong Zhang             }
63326fbe8dcSKarl Rupp           } else col = in[j];
6349566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6350880e062SHong Zhang         }
6360880e062SHong Zhang       }
6370880e062SHong Zhang     } else {
6385f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6390880e062SHong Zhang       if (!baij->donotstash) {
6400880e062SHong Zhang         if (roworiented) {
6419566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6420880e062SHong Zhang         } else {
6439566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6440880e062SHong Zhang         }
6450880e062SHong Zhang       }
6460880e062SHong Zhang     }
6470880e062SHong Zhang   }
6483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
649a30f8f8cSSatish Balay }
650a30f8f8cSSatish Balay 
65166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
652d71ae5a4SJacob Faibussowitsch {
653f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
654d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
655d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
656a30f8f8cSSatish Balay 
657a30f8f8cSSatish Balay   PetscFunctionBegin;
658a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
65954c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66054c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
661a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
662a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
663a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
66454c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66554c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
666a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
667a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
6689566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
669a30f8f8cSSatish Balay         } else {
67048a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
671a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
672eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
673a30f8f8cSSatish Balay           data--;
674a30f8f8cSSatish Balay #else
675a30f8f8cSSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
676a30f8f8cSSatish Balay #endif
677a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
678a30f8f8cSSatish Balay           else {
679a30f8f8cSSatish Balay             col = data + idxn[j] % bs;
6809566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
681a30f8f8cSSatish Balay           }
682a30f8f8cSSatish Balay         }
683a30f8f8cSSatish Balay       }
684f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
685a30f8f8cSSatish Balay   }
6863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
687a30f8f8cSSatish Balay }
688a30f8f8cSSatish Balay 
68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
690d71ae5a4SJacob Faibussowitsch {
691a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
692a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
693a30f8f8cSSatish Balay 
694a30f8f8cSSatish Balay   PetscFunctionBegin;
695a30f8f8cSSatish Balay   if (baij->size == 1) {
6969566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
697a30f8f8cSSatish Balay   } else {
698a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
6999566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
7009566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
7019371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7029371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
7039566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7049371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7059371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
706462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7078f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7089566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7090b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7100b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7110b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
712e91c04dfSPierre Jolivet       PetscReal    *rsum, vabs;
713899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
714d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7150b8dc8d2SHong Zhang       MatScalar    *v;
7160b8dc8d2SHong Zhang 
717e91c04dfSPierre Jolivet       PetscCall(PetscMalloc1(mat->cmap->N, &rsum));
7189566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
7190b8dc8d2SHong Zhang       /* Amat */
7209371c9d4SSatish Balay       v  = amat->a;
7219371c9d4SSatish Balay       jj = amat->j;
7220b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7230b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7240b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7250b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7269371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7279371c9d4SSatish Balay           jj++;
7280b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7290b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7309371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7319371c9d4SSatish Balay               v++;
7320b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7330b8dc8d2SHong Zhang               /* non-diagonal block */
7340b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7350b8dc8d2SHong Zhang             }
7360b8dc8d2SHong Zhang           }
7370b8dc8d2SHong Zhang         }
7389566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7390b8dc8d2SHong Zhang       }
7400b8dc8d2SHong Zhang       /* Bmat */
7419371c9d4SSatish Balay       v  = bmat->a;
7429371c9d4SSatish Balay       jj = bmat->j;
7430b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7440b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7450b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7460b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7479371c9d4SSatish Balay           gcol = bs * garray[*jj];
7489371c9d4SSatish Balay           jj++;
7490b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7500b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7519371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7529371c9d4SSatish Balay               v++;
7530b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7540b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7550b8dc8d2SHong Zhang             }
7560b8dc8d2SHong Zhang           }
7570b8dc8d2SHong Zhang         }
7589566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7590b8dc8d2SHong Zhang       }
760e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7610b8dc8d2SHong Zhang       *norm = 0.0;
762d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
763e91c04dfSPierre Jolivet         if (rsum[col] > *norm) *norm = rsum[col];
7640b8dc8d2SHong Zhang       }
765e91c04dfSPierre Jolivet       PetscCall(PetscFree(rsum));
766f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
767a30f8f8cSSatish Balay   }
7683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
769a30f8f8cSSatish Balay }
770a30f8f8cSSatish Balay 
77166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
772d71ae5a4SJacob Faibussowitsch {
773a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7741302d50aSBarry Smith   PetscInt      nstash, reallocs;
775a30f8f8cSSatish Balay 
776a30f8f8cSSatish Balay   PetscFunctionBegin;
7773ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
778a30f8f8cSSatish Balay 
7799566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7809566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7819566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7829566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7839566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7849566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
786a30f8f8cSSatish Balay }
787a30f8f8cSSatish Balay 
78866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
789d71ae5a4SJacob Faibussowitsch {
790a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
791a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
79213f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
793e44c0bd4SBarry Smith   PetscInt     *row, *col;
794ace3abfcSBarry Smith   PetscBool     other_disassembled;
79513f74950SBarry Smith   PetscMPIInt   n;
796ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
797a30f8f8cSSatish Balay   MatScalar    *val;
798a30f8f8cSSatish Balay 
79991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
800a30f8f8cSSatish Balay   PetscFunctionBegin;
8014cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
802a30f8f8cSSatish Balay     while (1) {
8039566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
804a30f8f8cSSatish Balay       if (!flg) break;
805a30f8f8cSSatish Balay 
806a30f8f8cSSatish Balay       for (i = 0; i < n;) {
807a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
80826fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
80926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81026fbe8dcSKarl Rupp         }
811a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
812a30f8f8cSSatish Balay         else ncols = n - i;
813a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8149566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
815a30f8f8cSSatish Balay         i = j;
816a30f8f8cSSatish Balay       }
817a30f8f8cSSatish Balay     }
8189566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
819a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
8205e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
821a30f8f8cSSatish Balay        restore the original flags */
822a30f8f8cSSatish Balay     r1 = baij->roworiented;
823a30f8f8cSSatish Balay     r2 = a->roworiented;
82491c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
82526fbe8dcSKarl Rupp 
826a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
827a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
82826fbe8dcSKarl Rupp 
82991c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
830a30f8f8cSSatish Balay     while (1) {
8319566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
832a30f8f8cSSatish Balay       if (!flg) break;
833a30f8f8cSSatish Balay 
834a30f8f8cSSatish Balay       for (i = 0; i < n;) {
835a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
83626fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
83726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
83826fbe8dcSKarl Rupp         }
839a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
840a30f8f8cSSatish Balay         else ncols = n - i;
8419566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
842a30f8f8cSSatish Balay         i = j;
843a30f8f8cSSatish Balay       }
844a30f8f8cSSatish Balay     }
8459566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
84626fbe8dcSKarl Rupp 
847a30f8f8cSSatish Balay     baij->roworiented = r1;
848a30f8f8cSSatish Balay     a->roworiented    = r2;
84926fbe8dcSKarl Rupp 
85091c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */
851a30f8f8cSSatish Balay   }
852a30f8f8cSSatish Balay 
8539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
855a30f8f8cSSatish Balay 
856a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
8576aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
858a30f8f8cSSatish Balay   /*
859a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
860a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
861a30f8f8cSSatish Balay   */
862a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
863462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
86448a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
865a30f8f8cSSatish Balay   }
866a30f8f8cSSatish Balay 
8679371c9d4SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ }
8689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
870a30f8f8cSSatish Balay 
8719566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
87226fbe8dcSKarl Rupp 
873f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8744f9cfa9eSBarry Smith 
8754f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
876f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
877e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
878462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
879e56f5c9eSBarry Smith   }
8803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
881a30f8f8cSSatish Balay }
882a30f8f8cSSatish Balay 
883dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8849804daf3SBarry Smith #include <petscdraw.h>
885d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
886d71ae5a4SJacob Faibussowitsch {
887a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
888d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8897da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
890ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
891b0a32e0cSBarry Smith   PetscViewer       sviewer;
892f3ef73ceSBarry Smith   PetscViewerFormat format;
893a30f8f8cSSatish Balay 
894a30f8f8cSSatish Balay   PetscFunctionBegin;
8959566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
8969566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
89732077d6dSBarry Smith   if (iascii) {
8989566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
899456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
900a30f8f8cSSatish Balay       MatInfo info;
9019566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
9029566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9039566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9049371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
905835f2295SStefano Zampini                                                    mat->rmap->bs, info.memory));
9069566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9089566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9099566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9109566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9139566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
915fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9169566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9173ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
918c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9193ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
920a30f8f8cSSatish Balay     }
921a30f8f8cSSatish Balay   }
922a30f8f8cSSatish Balay 
923a30f8f8cSSatish Balay   if (isdraw) {
924b0a32e0cSBarry Smith     PetscDraw draw;
925ace3abfcSBarry Smith     PetscBool isnull;
9269566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9279566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9283ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
929a30f8f8cSSatish Balay   }
930a30f8f8cSSatish Balay 
9317da1fb6eSBarry Smith   {
932a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
933a30f8f8cSSatish Balay     Mat           A;
93465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
93565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
936d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
937a30f8f8cSSatish Balay     MatScalar    *a;
9383e219373SBarry Smith     const char   *matname;
939a30f8f8cSSatish Balay 
940f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9419566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
942dd400576SPatrick Sanan     if (rank == 0) {
9439566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
944a30f8f8cSSatish Balay     } else {
9459566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
946a30f8f8cSSatish Balay     }
9479566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9489566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9499566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
950a30f8f8cSSatish Balay 
951a30f8f8cSSatish Balay     /* copy over the A part */
95265d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9539371c9d4SSatish Balay     ai   = Aloc->i;
9549371c9d4SSatish Balay     aj   = Aloc->j;
9559371c9d4SSatish Balay     a    = Aloc->a;
9569566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
957a30f8f8cSSatish Balay 
958a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
959e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
96026fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
961a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
962e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
963a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9649566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
96526fbe8dcSKarl Rupp           col++;
96626fbe8dcSKarl Rupp           a += bs;
967a30f8f8cSSatish Balay         }
968a30f8f8cSSatish Balay       }
969a30f8f8cSSatish Balay     }
970a30f8f8cSSatish Balay     /* copy over the B part */
97165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9729371c9d4SSatish Balay     ai   = Bloc->i;
9739371c9d4SSatish Balay     aj   = Bloc->j;
9749371c9d4SSatish Balay     a    = Bloc->a;
975a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
976e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
97726fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
978a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
979a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
980a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9819566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
98226fbe8dcSKarl Rupp           col++;
98326fbe8dcSKarl Rupp           a += bs;
984a30f8f8cSSatish Balay         }
985a30f8f8cSSatish Balay       }
986a30f8f8cSSatish Balay     }
9879566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
9889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9899566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
990a30f8f8cSSatish Balay     /*
991a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
992b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
993a30f8f8cSSatish Balay     */
9949566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
99523a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
996dd400576SPatrick Sanan     if (rank == 0) {
997f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname));
998f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer));
999a30f8f8cSSatish Balay     }
10009566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
10019566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
1002a30f8f8cSSatish Balay   }
10033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1004a30f8f8cSSatish Balay }
1005a30f8f8cSSatish Balay 
1006618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1007618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1008d1654148SHong Zhang 
100966976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1010d71ae5a4SJacob Faibussowitsch {
1011ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1012a30f8f8cSSatish Balay 
1013a30f8f8cSSatish Balay   PetscFunctionBegin;
10149566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10159566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1018d1654148SHong Zhang   if (iascii || isdraw || issocket) {
10199566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
10201baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
1024789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX)
1025789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1026d71ae5a4SJacob Faibussowitsch {
1027547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1028eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10296de40e93SBarry Smith   PetscScalar       *from;
10306de40e93SBarry Smith   const PetscScalar *x;
1031547795f9SHong Zhang 
1032547795f9SHong Zhang   PetscFunctionBegin;
1033547795f9SHong Zhang   /* diagonal part */
10349566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1035629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1036629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1037629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1038547795f9SHong Zhang 
1039547795f9SHong Zhang   /* subdiagonal part */
10405f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10419566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1042547795f9SHong Zhang 
1043547795f9SHong Zhang   /* copy x into the vec slvec0 */
10449566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10459566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1046547795f9SHong Zhang 
10479566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10499566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1050547795f9SHong Zhang 
10519566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10529566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1053547795f9SHong Zhang   /* supperdiagonal part */
10549566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1056547795f9SHong Zhang }
1057789afff4SPierre Jolivet #endif
1058547795f9SHong Zhang 
105966976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1060d71ae5a4SJacob Faibussowitsch {
1061a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1062eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1063d9ca1df4SBarry Smith   PetscScalar       *from;
1064d9ca1df4SBarry Smith   const PetscScalar *x;
1065a9d4b620SHong Zhang 
1066a9d4b620SHong Zhang   PetscFunctionBegin;
1067a9d4b620SHong Zhang   /* diagonal part */
10689566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1069629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1070629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1071629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1072a9d4b620SHong Zhang 
1073a9d4b620SHong Zhang   /* subdiagonal part */
10749566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1075fc165ae2SBarry Smith 
1076a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10789566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1079a9d4b620SHong Zhang 
10809566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1083fc165ae2SBarry Smith 
10849566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1086a9d4b620SHong Zhang   /* supperdiagonal part */
10879566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1089a9d4b620SHong Zhang }
1090a9d4b620SHong Zhang 
109166976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
109266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1093d71ae5a4SJacob Faibussowitsch {
1094eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1095eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1096629a200eSBarry Smith   PetscScalar       *from;
1097eb1ec7c1SStefano Zampini   const PetscScalar *x;
1098eb1ec7c1SStefano Zampini 
1099eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1100eb1ec7c1SStefano Zampini   /* diagonal part */
11019566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1102629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1103629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1104eb1ec7c1SStefano Zampini 
1105eb1ec7c1SStefano Zampini   /* subdiagonal part */
11065f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
11079566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1108eb1ec7c1SStefano Zampini 
1109eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11109566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11119566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11129566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1114eb1ec7c1SStefano Zampini 
11159566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11179566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1118eb1ec7c1SStefano Zampini 
1119eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11209566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1122eb1ec7c1SStefano Zampini }
112366976f2fSJacob Faibussowitsch #endif
1124eb1ec7c1SStefano Zampini 
112566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1126d71ae5a4SJacob Faibussowitsch {
1127de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1128d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1129629a200eSBarry Smith   PetscScalar       *from;
1130d9ca1df4SBarry Smith   const PetscScalar *x;
1131a9d4b620SHong Zhang 
1132a9d4b620SHong Zhang   PetscFunctionBegin;
1133a9d4b620SHong Zhang   /* diagonal part */
11349566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1135629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1136629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1137a9d4b620SHong Zhang 
1138a9d4b620SHong Zhang   /* subdiagonal part */
11399566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1140a9d4b620SHong Zhang 
1141a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11429566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11439566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11449566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1146a9d4b620SHong Zhang 
11479566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11499566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1150a9d4b620SHong Zhang 
1151a9d4b620SHong Zhang   /* supperdiagonal part */
11529566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1154a9d4b620SHong Zhang }
1155a9d4b620SHong Zhang 
1156a30f8f8cSSatish Balay /*
1157a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1158a30f8f8cSSatish Balay    diagonal block
1159a30f8f8cSSatish Balay */
116066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1161d71ae5a4SJacob Faibussowitsch {
1162a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1163a30f8f8cSSatish Balay 
1164a30f8f8cSSatish Balay   PetscFunctionBegin;
116508401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11669566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1168a30f8f8cSSatish Balay }
1169a30f8f8cSSatish Balay 
117066976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1171d71ae5a4SJacob Faibussowitsch {
1172a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1173a30f8f8cSSatish Balay 
1174a30f8f8cSSatish Balay   PetscFunctionBegin;
11759566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11769566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1178a30f8f8cSSatish Balay }
1179a30f8f8cSSatish Balay 
118066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1181d71ae5a4SJacob Faibussowitsch {
1182d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1183d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1184d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1185d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1186899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1187d0d4cfc2SHong Zhang 
1188a30f8f8cSSatish Balay   PetscFunctionBegin;
11895f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1190d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1191d0d4cfc2SHong Zhang 
1192d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1193d0d4cfc2SHong Zhang     /*
1194d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1195d0d4cfc2SHong Zhang     */
1196d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1197d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1198d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1199d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1200d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
120126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1202d0d4cfc2SHong Zhang     }
12039566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1204d0d4cfc2SHong Zhang   }
1205d0d4cfc2SHong Zhang 
12065f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1207d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1208d0d4cfc2SHong Zhang 
12099371c9d4SSatish Balay   pvA = &vworkA;
12109371c9d4SSatish Balay   pcA = &cworkA;
12119371c9d4SSatish Balay   pvB = &vworkB;
12129371c9d4SSatish Balay   pcB = &cworkB;
12139371c9d4SSatish Balay   if (!v) {
12149371c9d4SSatish Balay     pvA = NULL;
12159371c9d4SSatish Balay     pvB = NULL;
12169371c9d4SSatish Balay   }
12179371c9d4SSatish Balay   if (!idx) {
12189371c9d4SSatish Balay     pcA = NULL;
12199371c9d4SSatish Balay     if (!v) pcB = NULL;
12209371c9d4SSatish Balay   }
12219566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12229566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1223d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1224d0d4cfc2SHong Zhang 
1225d0d4cfc2SHong Zhang   cmap = mat->garray;
1226d0d4cfc2SHong Zhang   if (v || idx) {
1227d0d4cfc2SHong Zhang     if (nztot) {
1228d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1229d0d4cfc2SHong Zhang       PetscInt imark = -1;
1230d0d4cfc2SHong Zhang       if (v) {
1231d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1232d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1233d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1234d0d4cfc2SHong Zhang           else break;
1235d0d4cfc2SHong Zhang         }
1236d0d4cfc2SHong Zhang         imark = i;
1237d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1238d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1239d0d4cfc2SHong Zhang       }
1240d0d4cfc2SHong Zhang       if (idx) {
1241d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1242d0d4cfc2SHong Zhang         if (imark > -1) {
1243ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1244d0d4cfc2SHong Zhang         } else {
1245d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
124626fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1247d0d4cfc2SHong Zhang             else break;
1248d0d4cfc2SHong Zhang           }
1249d0d4cfc2SHong Zhang           imark = i;
1250d0d4cfc2SHong Zhang         }
1251d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1252d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1253d0d4cfc2SHong Zhang       }
1254d0d4cfc2SHong Zhang     } else {
1255f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1256f4259b30SLisandro Dalcin       if (v) *v = NULL;
1257d0d4cfc2SHong Zhang     }
1258d0d4cfc2SHong Zhang   }
1259d0d4cfc2SHong Zhang   *nz = nztot;
12609566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12619566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1263a30f8f8cSSatish Balay }
1264a30f8f8cSSatish Balay 
126566976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1266d71ae5a4SJacob Faibussowitsch {
1267a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1268a30f8f8cSSatish Balay 
1269a30f8f8cSSatish Balay   PetscFunctionBegin;
12705f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1271a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1273a30f8f8cSSatish Balay }
1274a30f8f8cSSatish Balay 
127566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1276d71ae5a4SJacob Faibussowitsch {
1277d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1278d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1279d0d4cfc2SHong Zhang 
1280d0d4cfc2SHong Zhang   PetscFunctionBegin;
1281d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1283d0d4cfc2SHong Zhang }
128466976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1285d71ae5a4SJacob Faibussowitsch {
1286d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1287d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1288d0d4cfc2SHong Zhang 
1289d0d4cfc2SHong Zhang   PetscFunctionBegin;
1290d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
12913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1292d0d4cfc2SHong Zhang }
1293d0d4cfc2SHong Zhang 
129466976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1295d71ae5a4SJacob Faibussowitsch {
12965f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
12975f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
12982726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
12992726fb6dSPierre Jolivet 
13009566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
13019566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
13025f80ce2aSJacob Faibussowitsch   }
13033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13042726fb6dSPierre Jolivet }
13052726fb6dSPierre Jolivet 
130666976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1307d71ae5a4SJacob Faibussowitsch {
130899cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
130999cafbc1SBarry Smith 
131099cafbc1SBarry Smith   PetscFunctionBegin;
13119566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13129566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
131499cafbc1SBarry Smith }
131599cafbc1SBarry Smith 
131666976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1317d71ae5a4SJacob Faibussowitsch {
131899cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
131999cafbc1SBarry Smith 
132099cafbc1SBarry Smith   PetscFunctionBegin;
13219566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13229566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
132499cafbc1SBarry Smith }
132599cafbc1SBarry Smith 
13267dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
132736032a97SHong Zhang    Input: isrow       - distributed(parallel),
132836032a97SHong Zhang           iscol_local - locally owned (seq)
132936032a97SHong Zhang */
133066976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1331d71ae5a4SJacob Faibussowitsch {
13328f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13338f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
133436032a97SHong Zhang 
133536032a97SHong Zhang   PetscFunctionBegin;
133666976f2fSJacob Faibussowitsch   *flg = PETSC_FALSE;
13379566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13389566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
133966976f2fSJacob Faibussowitsch   if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13408f46ffcaSHong Zhang 
13419566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13429566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13438f46ffcaSHong Zhang 
13449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13469566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13479566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13489566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13499566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13508f46ffcaSHong Zhang 
13518f46ffcaSHong Zhang   nmatch = 0;
13528f46ffcaSHong Zhang   k      = 0;
13538f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13548f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13558f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13569371c9d4SSatish Balay         k = j;
13579371c9d4SSatish Balay         nmatch++;
13588f46ffcaSHong Zhang         break;
13598f46ffcaSHong Zhang       }
13608f46ffcaSHong Zhang     }
13618f46ffcaSHong Zhang   }
13629566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13639566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13649566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13659566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13661098a8e8SHong Zhang   if (nmatch < sz1) {
13671098a8e8SHong Zhang     *flg = PETSC_FALSE;
13681098a8e8SHong Zhang   } else {
13691098a8e8SHong Zhang     *flg = PETSC_TRUE;
13701098a8e8SHong Zhang   }
13713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13728f46ffcaSHong Zhang }
137336032a97SHong Zhang 
137466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1375d71ae5a4SJacob Faibussowitsch {
1376fdfbdca6SPierre Jolivet   Mat       C[2];
1377fdfbdca6SPierre Jolivet   IS        iscol_local, isrow_local;
1378fdfbdca6SPierre Jolivet   PetscInt  csize, csize_local, rsize;
1379fdfbdca6SPierre Jolivet   PetscBool isequal, issorted, isidentity = PETSC_FALSE;
138036032a97SHong Zhang 
138136032a97SHong Zhang   PetscFunctionBegin;
13829566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1383fdfbdca6SPierre Jolivet   PetscCall(ISGetLocalSize(isrow, &rsize));
138436032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13859566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13865f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
138736032a97SHong Zhang   } else {
13889566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
13899566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
1390fdfbdca6SPierre Jolivet     PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
13918f46ffcaSHong Zhang   }
1392fdfbdca6SPierre Jolivet   PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1393fdfbdca6SPierre Jolivet   if (!isequal) {
1394fdfbdca6SPierre Jolivet     PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1395fdfbdca6SPierre Jolivet     isidentity = (PetscBool)(mat->cmap->N == csize_local);
1396fdfbdca6SPierre Jolivet     if (!isidentity) {
1397fdfbdca6SPierre Jolivet       if (call == MAT_REUSE_MATRIX) {
1398fdfbdca6SPierre Jolivet         PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1399fdfbdca6SPierre Jolivet         PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1400fdfbdca6SPierre Jolivet       } else {
1401fdfbdca6SPierre Jolivet         PetscCall(ISAllGather(isrow, &isrow_local));
1402fdfbdca6SPierre Jolivet         PetscCall(ISSorted(isrow_local, &issorted));
1403fdfbdca6SPierre Jolivet         PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1404fdfbdca6SPierre Jolivet       }
1405fdfbdca6SPierre Jolivet     }
1406fdfbdca6SPierre Jolivet   }
14077dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
1408fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1409fdfbdca6SPierre Jolivet   if (!isequal && !isidentity) {
14108f46ffcaSHong Zhang     if (call == MAT_INITIAL_MATRIX) {
1411fdfbdca6SPierre Jolivet       IS       intersect;
1412fdfbdca6SPierre Jolivet       PetscInt ni;
1413fdfbdca6SPierre Jolivet 
1414fdfbdca6SPierre Jolivet       PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1415fdfbdca6SPierre Jolivet       PetscCall(ISGetLocalSize(intersect, &ni));
1416fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&intersect));
1417fdfbdca6SPierre Jolivet       PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1418fdfbdca6SPierre Jolivet     }
1419fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1420fdfbdca6SPierre Jolivet     PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1421fdfbdca6SPierre Jolivet     PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1422fdfbdca6SPierre Jolivet     if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1423fdfbdca6SPierre Jolivet     else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1424fdfbdca6SPierre Jolivet     else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1425fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C));
1426fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C + 1));
1427fdfbdca6SPierre Jolivet   }
1428fdfbdca6SPierre Jolivet   if (call == MAT_INITIAL_MATRIX) {
1429fdfbdca6SPierre Jolivet     if (!isequal && !isidentity) {
1430fdfbdca6SPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1431fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&isrow_local));
1432fdfbdca6SPierre Jolivet     }
14339566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14349566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14358f46ffcaSHong Zhang   }
14363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14378f46ffcaSHong Zhang }
14388f46ffcaSHong Zhang 
143966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1440d71ae5a4SJacob Faibussowitsch {
1441a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1442a30f8f8cSSatish Balay 
1443a30f8f8cSSatish Balay   PetscFunctionBegin;
14449566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14459566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1447a30f8f8cSSatish Balay }
1448a30f8f8cSSatish Balay 
144966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1450d71ae5a4SJacob Faibussowitsch {
1451a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1452a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14533966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1454a30f8f8cSSatish Balay 
1455a30f8f8cSSatish Balay   PetscFunctionBegin;
1456d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
145726fbe8dcSKarl Rupp 
14589566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
145926fbe8dcSKarl Rupp 
14609371c9d4SSatish Balay   isend[0] = info->nz_used;
14619371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14629371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14639371c9d4SSatish Balay   isend[3] = info->memory;
14649371c9d4SSatish Balay   isend[4] = info->mallocs;
146526fbe8dcSKarl Rupp 
14669566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
146726fbe8dcSKarl Rupp 
14689371c9d4SSatish Balay   isend[0] += info->nz_used;
14699371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14709371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14719371c9d4SSatish Balay   isend[3] += info->memory;
14729371c9d4SSatish Balay   isend[4] += info->mallocs;
1473a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1474a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1475a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1476a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1477a30f8f8cSSatish Balay     info->memory       = isend[3];
1478a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1479a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1480462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
148126fbe8dcSKarl Rupp 
1482a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1483a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1484a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1485a30f8f8cSSatish Balay     info->memory       = irecv[3];
1486a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1487a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1488462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
148926fbe8dcSKarl Rupp 
1490a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1491a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1492a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1493a30f8f8cSSatish Balay     info->memory       = irecv[3];
1494a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
149598921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1496a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1497a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1498a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
14993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1500a30f8f8cSSatish Balay }
1501a30f8f8cSSatish Balay 
150266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1503d71ae5a4SJacob Faibussowitsch {
1504a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1505d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1506a30f8f8cSSatish Balay 
1507a30f8f8cSSatish Balay   PetscFunctionBegin;
1508e98b92d7SKris Buschelman   switch (op) {
1509512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1510e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
151128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1512a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1513e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
151443674050SBarry Smith     MatCheckPreallocated(A, 1);
15159566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15169566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1517e98b92d7SKris Buschelman     break;
1518e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
151943674050SBarry Smith     MatCheckPreallocated(A, 1);
15204e0d8c25SBarry Smith     a->roworiented = flg;
152126fbe8dcSKarl Rupp 
15229566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15239566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1524e98b92d7SKris Buschelman     break;
1525d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1526d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1527d71ae5a4SJacob Faibussowitsch     break;
1528d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1529d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1530d71ae5a4SJacob Faibussowitsch     break;
1531d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
15329725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
15330f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1534eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1535547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1536eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1537eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1538eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1539b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1540eb1ec7c1SStefano Zampini     }
15410f2140c7SStefano Zampini #endif
1542eeffb40dSHong Zhang     break;
1543ffa07934SHong Zhang   case MAT_SPD:
1544d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
15459725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1546eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1547eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1548eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1549eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1550eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1551eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1552eb1ec7c1SStefano Zampini     }
1553eb1ec7c1SStefano Zampini #endif
1554eeffb40dSHong Zhang     break;
155577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15569725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1557eeffb40dSHong Zhang     break;
1558d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1559d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1560d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1561d71ae5a4SJacob Faibussowitsch     break;
1562d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1563d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1564d71ae5a4SJacob Faibussowitsch     break;
1565d71ae5a4SJacob Faibussowitsch   default:
1566*888c827cSStefano Zampini     break;
1567a30f8f8cSSatish Balay   }
15683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1569a30f8f8cSSatish Balay }
1570a30f8f8cSSatish Balay 
157166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1572d71ae5a4SJacob Faibussowitsch {
1573a30f8f8cSSatish Balay   PetscFunctionBegin;
15747fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1575cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
15769566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1577cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
15789566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1579fc4dec0aSBarry Smith   }
15803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1581a30f8f8cSSatish Balay }
1582a30f8f8cSSatish Balay 
158366976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1584d71ae5a4SJacob Faibussowitsch {
1585a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1586a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
15875e90f9d9SHong Zhang   PetscInt      nv, m, n;
1588ace3abfcSBarry Smith   PetscBool     flg;
1589a30f8f8cSSatish Balay 
1590a30f8f8cSSatish Balay   PetscFunctionBegin;
1591a30f8f8cSSatish Balay   if (ll != rr) {
15929566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
15935f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1594a30f8f8cSSatish Balay   }
15953ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1596b3bf805bSHong Zhang 
15979566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
15985f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1599b3bf805bSHong Zhang 
16009566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
16015f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
16025e90f9d9SHong Zhang 
16039566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
16045e90f9d9SHong Zhang 
16055e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1606dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16075e90f9d9SHong Zhang 
16085e90f9d9SHong Zhang   /* scale the diagonal part */
1609dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1610a30f8f8cSSatish Balay 
16115e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
16129566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1613dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
16143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1615a30f8f8cSSatish Balay }
1616a30f8f8cSSatish Balay 
161766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1618d71ae5a4SJacob Faibussowitsch {
1619f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1620a30f8f8cSSatish Balay 
1621a30f8f8cSSatish Balay   PetscFunctionBegin;
16229566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1624a30f8f8cSSatish Balay }
1625a30f8f8cSSatish Balay 
16266849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1627a30f8f8cSSatish Balay 
162866976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1629d71ae5a4SJacob Faibussowitsch {
1630a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1631a30f8f8cSSatish Balay   Mat           a, b, c, d;
1632ace3abfcSBarry Smith   PetscBool     flg;
1633a30f8f8cSSatish Balay 
1634a30f8f8cSSatish Balay   PetscFunctionBegin;
16359371c9d4SSatish Balay   a = matA->A;
16369371c9d4SSatish Balay   b = matA->B;
16379371c9d4SSatish Balay   c = matB->A;
16389371c9d4SSatish Balay   d = matB->B;
1639a30f8f8cSSatish Balay 
16409566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
164148a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
1642462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1644a30f8f8cSSatish Balay }
1645a30f8f8cSSatish Balay 
164666976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1647d71ae5a4SJacob Faibussowitsch {
16484c7a3774SStefano Zampini   PetscBool isbaij;
16493c896bc6SHong Zhang 
16503c896bc6SHong Zhang   PetscFunctionBegin;
16519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16525f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16533c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16543c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16559566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16569566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16579566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16583c896bc6SHong Zhang   } else {
16594c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16604c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16614c7a3774SStefano Zampini 
16629566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16639566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16643c896bc6SHong Zhang   }
16659566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16673c896bc6SHong Zhang }
16683c896bc6SHong Zhang 
166966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1670d71ae5a4SJacob Faibussowitsch {
16714fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16724fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
16734fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
16744fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
16754fe895cdSHong Zhang 
16764fe895cdSHong Zhang   PetscFunctionBegin;
16774fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16784fe895cdSHong Zhang     PetscScalar alpha = a;
16794fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
16804fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
16819566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1682792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16834fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
16844fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
16859566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1686792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16879566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1688ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16899566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16909566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
16919566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16924fe895cdSHong Zhang   } else {
16934de5dceeSHong Zhang     Mat       B;
16944de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16955f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16969566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
16979566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
16989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
17009566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
17019566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
17029566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
17039566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
17049566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
17059566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
17069566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
17079566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
17089566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
17099566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
17109566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
17119566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
17129566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
17139566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
17144fe895cdSHong Zhang   }
17153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17164fe895cdSHong Zhang }
17174fe895cdSHong Zhang 
171866976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1719d71ae5a4SJacob Faibussowitsch {
17201302d50aSBarry Smith   PetscInt  i;
1721afebec48SHong Zhang   PetscBool flg;
1722a5e6ed63SBarry Smith 
17236849ba73SBarry Smith   PetscFunctionBegin;
17249566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1725a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17269566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
172748a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17284dcd73b1SHong Zhang   }
17293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1730a5e6ed63SBarry Smith }
1731a5e6ed63SBarry Smith 
173266976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1733d71ae5a4SJacob Faibussowitsch {
17347d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17356f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17367d68702bSBarry Smith 
17377d68702bSBarry Smith   PetscFunctionBegin;
17386f33a894SBarry Smith   if (!Y->preallocated) {
17399566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17406f33a894SBarry Smith   } else if (!aij->nz) {
1741b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17429566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1743b83222d8SBarry Smith     aij->nonew = nonew;
17447d68702bSBarry Smith   }
17459566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17477d68702bSBarry Smith }
17487d68702bSBarry Smith 
174966976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d)
1750d71ae5a4SJacob Faibussowitsch {
17513b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
17523b49f96aSBarry Smith 
17533b49f96aSBarry Smith   PetscFunctionBegin;
17545f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
17559566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
17563b49f96aSBarry Smith   if (d) {
17573b49f96aSBarry Smith     PetscInt rstart;
17589566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
17593b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
17603b49f96aSBarry Smith   }
17613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17623b49f96aSBarry Smith }
17633b49f96aSBarry Smith 
176466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1765d71ae5a4SJacob Faibussowitsch {
1766a5b7ff6bSBarry Smith   PetscFunctionBegin;
1767a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1769a5b7ff6bSBarry Smith }
17703b49f96aSBarry Smith 
177117ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
177217ea310bSPierre Jolivet {
177317ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
177417ea310bSPierre Jolivet 
177517ea310bSPierre Jolivet   PetscFunctionBegin;
177617ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
177717ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
177817ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
177917ea310bSPierre Jolivet }
178017ea310bSPierre Jolivet 
17816cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer);
1782789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]);
1783789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
17846cff0a6bSPierre Jolivet 
17853964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1786a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1787a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1788a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
178997304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1790431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1791431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1792f4259b30SLisandro Dalcin                                        NULL,
1793f4259b30SLisandro Dalcin                                        NULL,
1794f4259b30SLisandro Dalcin                                        NULL,
1795f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1796f4259b30SLisandro Dalcin                                        NULL,
1797f4259b30SLisandro Dalcin                                        NULL,
179841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1799a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
180097304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1801a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1802a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1803a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1804a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
180597304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1806a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1807a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1808a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1809f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
181426cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1815f4259b30SLisandro Dalcin                                        NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
1817a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1818f4259b30SLisandro Dalcin                                        NULL,
1819d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1820f4259b30SLisandro Dalcin                                        NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
18257dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1826d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1827a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18283c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1829f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1830a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18317d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1842f4259b30SLisandro Dalcin                                        NULL,
1843a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18447dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1855f4259b30SLisandro Dalcin                                        NULL,
185628d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1860f4259b30SLisandro Dalcin                                        NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                        NULL,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
18685bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1869f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
18872726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        /*104*/ NULL,
189099cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1891d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1892d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
189395936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1894f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
18983b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1899f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
1906f4259b30SLisandro Dalcin                                        NULL,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
1909f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1910f4259b30SLisandro Dalcin                                        NULL,
1911f4259b30SLisandro Dalcin                                        NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
1913f4259b30SLisandro Dalcin                                        NULL,
1914f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
1917f4259b30SLisandro Dalcin                                        NULL,
1918f4259b30SLisandro Dalcin                                        NULL,
1919f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1920f4259b30SLisandro Dalcin                                        NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        NULL,
1923f4259b30SLisandro Dalcin                                        NULL,
192446533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
1925f4259b30SLisandro Dalcin                                        NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        NULL,
1928f4259b30SLisandro Dalcin                                        NULL,
1929d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1930d70f29a3SPierre Jolivet                                        NULL,
1931d70f29a3SPierre Jolivet                                        NULL,
193299a7f59eSMark Adams                                        NULL,
193399a7f59eSMark Adams                                        NULL,
19347fb60732SBarry Smith                                        NULL,
1935dec0b466SHong Zhang                                        /*150*/ NULL,
1936eede4a3fSMark Adams                                        MatEliminateZeros_MPISBAIJ,
19374cc2b5b5SPierre Jolivet                                        NULL,
193842ce410bSJunchao Zhang                                        NULL,
193942ce410bSJunchao Zhang                                        NULL,
1940fe1fc275SAlexander                                        /*155*/ NULL,
1941fe1fc275SAlexander                                        MatCopyHashToXAIJ_MPI_Hash};
1942a30f8f8cSSatish Balay 
194366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1944d71ae5a4SJacob Faibussowitsch {
1945476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1946535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19475d2a9ed1SStefano Zampini   PetscMPIInt   size;
1948a23d5eceSKris Buschelman 
1949a23d5eceSKris Buschelman   PetscFunctionBegin;
1950ad79cf63SBarry Smith   if (B->hash_active) {
1951aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1952ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1953ad79cf63SBarry Smith   }
1954ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
19559566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
19569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19595f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19605f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1961899cda47SBarry Smith 
1962d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1963d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19645f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1965a23d5eceSKris Buschelman 
1966d0f46423SBarry Smith   B->rmap->bs = bs;
1967a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1968a23d5eceSKris Buschelman   b->mbs      = mbs;
1969a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1970de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1971de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1972a23d5eceSKris Buschelman 
1973ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1974d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1975d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1976a23d5eceSKris Buschelman 
1977d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1978d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1979a23d5eceSKris Buschelman 
1980cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1981eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
1982cb7b82ddSBarry Smith #else
19839566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
1984cb7b82ddSBarry Smith #endif
19859566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
19869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
19879566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
19889566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
19899566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
19909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
19919566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
19929566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
19939566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
1994cb7b82ddSBarry Smith 
19959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
1996c508b908SBarry Smith 
1997c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
19989566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
19999566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
20009566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
20019566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2002c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2003cb7b82ddSBarry Smith 
2004c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2005ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
20069566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
20079566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
20089566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
2009c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2010a23d5eceSKris Buschelman 
20119566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
20129566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
201326fbe8dcSKarl Rupp 
2014526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2015cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2016cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
20173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2018a23d5eceSKris Buschelman }
2019a23d5eceSKris Buschelman 
202066976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2021d71ae5a4SJacob Faibussowitsch {
202202106b30SBarry Smith   PetscInt        m, rstart, cend;
2023f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2024f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2025f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2026bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
20273bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2028dfb205c3SBarry Smith 
2029dfb205c3SBarry Smith   PetscFunctionBegin;
20305f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
20319566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
20329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
20339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
20349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
20359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2036dfb205c3SBarry Smith   m      = B->rmap->n / bs;
2037dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
2038dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
2039dfb205c3SBarry Smith 
20405f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
20419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2042dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2043dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20445f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20454cf0e950SBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */
2046dfb205c3SBarry Smith     JJ = jj + ii[i];
20470cd7f59aSBarry Smith     bd = 0;
2048dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20490cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2050dfb205c3SBarry Smith       JJ++;
20510cd7f59aSBarry Smith       bd++;
2052dfb205c3SBarry Smith     }
2053dfb205c3SBarry Smith     d = 0;
2054dfb205c3SBarry Smith     for (; j < nz; j++) {
2055dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2056dfb205c3SBarry Smith       d++;
2057dfb205c3SBarry Smith     }
2058dfb205c3SBarry Smith     d_nnz[i] = d;
20590cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20600cd7f59aSBarry Smith     nz       = nz - bd;
20610cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2062dfb205c3SBarry Smith   }
20639566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20649566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2066dfb205c3SBarry Smith 
2067dfb205c3SBarry Smith   values = (PetscScalar *)V;
206848a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2069dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2070dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2071dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2072dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2073bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2074dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20759566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2076bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2077bb80cfbbSStefano Zampini       PetscInt j;
20780cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
20790cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20809566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20810cd7f59aSBarry Smith       }
20820cd7f59aSBarry Smith     }
2083dfb205c3SBarry Smith   }
2084dfb205c3SBarry Smith 
20859566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
20863bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20873bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
20889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
20899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
20903bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20913bd0feecSPierre Jolivet 
20929566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
20933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2094dfb205c3SBarry Smith }
2095dfb205c3SBarry Smith 
20960bad9183SKris Buschelman /*MC
2097fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2098828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2099828413b8SBarry Smith    the matrix is stored.
2100828413b8SBarry Smith 
2101828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
210211a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
21030bad9183SKris Buschelman 
21042ef1f0ffSBarry Smith    Options Database Key:
210511a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
21060bad9183SKris Buschelman 
21072ef1f0ffSBarry Smith    Level: beginner
21082ef1f0ffSBarry Smith 
210911a5261eSBarry Smith    Note:
2110476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2111476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2112476417e5SBarry Smith 
21131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
21140bad9183SKris Buschelman M*/
21150bad9183SKris Buschelman 
2116d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2117d71ae5a4SJacob Faibussowitsch {
2118b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
211994ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2120b5df2d14SHong Zhang 
2121b5df2d14SHong Zhang   PetscFunctionBegin;
21224dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2123b0a32e0cSBarry Smith   B->data   = (void *)b;
2124aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2125b5df2d14SHong Zhang 
2126b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2127b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2128b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2129b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
213026fbe8dcSKarl Rupp 
21319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
21329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2133b5df2d14SHong Zhang 
2134b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2136b5df2d14SHong Zhang 
2137b5df2d14SHong Zhang   /* build cache for off array entries formed */
21389566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
213926fbe8dcSKarl Rupp 
2140b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21410298fd71SBarry Smith   b->colmap      = NULL;
21420298fd71SBarry Smith   b->garray      = NULL;
2143b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2144b5df2d14SHong Zhang 
2145b5df2d14SHong Zhang   /* stuff used in block assembly */
2146f4259b30SLisandro Dalcin   b->barray = NULL;
2147b5df2d14SHong Zhang 
2148b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2149f4259b30SLisandro Dalcin   b->lvec    = NULL;
2150f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2151f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2152f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2153f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2154f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2155f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2156f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2157b5df2d14SHong Zhang 
2158b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2159f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2160f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2161b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2162b5df2d14SHong Zhang 
2163b5df2d14SHong Zhang   /* hash table stuff */
2164f4259b30SLisandro Dalcin   b->ht           = NULL;
2165f4259b30SLisandro Dalcin   b->hd           = NULL;
2166b5df2d14SHong Zhang   b->ht_size      = 0;
2167b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2168b5df2d14SHong Zhang   b->ht_fact      = 0;
2169b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2170b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2171b5df2d14SHong Zhang 
21727dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21737a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21747a868f3eSHong Zhang 
2175f4259b30SLisandro Dalcin   b->in_loc = NULL;
2176f4259b30SLisandro Dalcin   b->v_loc  = NULL;
217759ffdab8SBarry Smith   b->n_loc  = 0;
217894ae4db5SBarry Smith 
21799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21836214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21849566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
21856214f412SHong Zhang #endif
2186d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
21879566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2188d24d4204SJose E. Roman #endif
21899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
21909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2191aa5a9175SDahai Guo 
2192b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2193b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2194b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2195b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2196eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2197b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2198eb1ec7c1SStefano Zampini #else
2199b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2200eb1ec7c1SStefano Zampini #endif
220113647f61SHong Zhang 
22029566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2203d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
22049566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
220594ae4db5SBarry Smith   if (flg) {
220694ae4db5SBarry Smith     PetscReal fact = 1.39;
22079566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
22089566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
220994ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
22109566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
22119566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
221294ae4db5SBarry Smith   }
2213d0609cedSBarry Smith   PetscOptionsEnd();
22143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2215b5df2d14SHong Zhang }
2216b5df2d14SHong Zhang 
22172920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2218209238afSKris Buschelman /*MC
2219002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2220209238afSKris Buschelman 
222111a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
222211a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2223209238afSKris Buschelman 
222411a5261eSBarry Smith    Options Database Key:
2225c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2226209238afSKris Buschelman 
2227209238afSKris Buschelman   Level: beginner
2228209238afSKris Buschelman 
22291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2230209238afSKris Buschelman M*/
2231209238afSKris Buschelman 
22325d83a8b1SBarry Smith /*@
2233b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2234b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2235b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2236b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2237b5df2d14SHong Zhang 
2238c3339decSBarry Smith   Collective
2239b5df2d14SHong Zhang 
2240b5df2d14SHong Zhang   Input Parameters:
22411c4f3114SJed Brown + B     - the matrix
2242bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2243bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2244b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2245b5df2d14SHong Zhang           submatrix  (same for all local rows)
2246b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22476d10fdaeSSatish Balay           in the upper triangular and diagonal part of the in diagonal portion of the local
22482ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
224995742e49SBarry Smith           for the diagonal entry and set a value even if it is zero.
2250b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2251b5df2d14SHong Zhang           submatrix (same for all local rows).
2252b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2253c2fc9fa9SBarry Smith           off-diagonal portion of the local submatrix that is right of the diagonal
22542ef1f0ffSBarry Smith           (possibly different for each block row) or `NULL`.
2255b5df2d14SHong Zhang 
2256b5df2d14SHong Zhang   Options Database Keys:
2257a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2258b5df2d14SHong Zhang                     block calculations (much slower)
2259a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2260b5df2d14SHong Zhang 
22612ef1f0ffSBarry Smith   Level: intermediate
22622ef1f0ffSBarry Smith 
2263b5df2d14SHong Zhang   Notes:
2264b5df2d14SHong Zhang 
226511a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2266b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2267b5df2d14SHong Zhang 
226849a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
226949a6f317SBarry Smith 
2270b5df2d14SHong Zhang   Storage Information:
2271b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2272b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2273b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2274b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2275b5df2d14SHong Zhang 
2276b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
22772ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
22782ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2279b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
22802ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2281b5df2d14SHong Zhang 
228211a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2283aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22842ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2285aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2286aa95bbe8SBarry Smith 
2287b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2288b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2289b5df2d14SHong Zhang 
2290b5df2d14SHong Zhang .vb
2291b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2292a4b1a0f6SJed Brown           --------------------------
2293c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2294c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2295c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2296a4b1a0f6SJed Brown           --------------------------
2297b5df2d14SHong Zhang .ve
2298b5df2d14SHong Zhang 
2299b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2300b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
23016d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
230211a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2303b5df2d14SHong Zhang 
23042ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23056d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
23062ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2307c2fc9fa9SBarry Smith 
2308b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
23092ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2310b5df2d14SHong Zhang 
23111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2312b5df2d14SHong Zhang @*/
2313d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2314d71ae5a4SJacob Faibussowitsch {
2315b5df2d14SHong Zhang   PetscFunctionBegin;
23166ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
23176ba663aaSJed Brown   PetscValidType(B, 1);
23186ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2319cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
23203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2321b5df2d14SHong Zhang }
2322b5df2d14SHong Zhang 
23232920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
23245d83a8b1SBarry Smith /*@
232511a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2326a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2327a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
232820f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2329a30f8f8cSSatish Balay 
2330d083f849SBarry Smith   Collective
2331a30f8f8cSSatish Balay 
2332a30f8f8cSSatish Balay   Input Parameters:
2333a30f8f8cSSatish Balay + comm  - MPI communicator
233411a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
233520f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
233620f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2337a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2338a30f8f8cSSatish Balay           y vector for the matrix-vector product y = Ax.
233920f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2340a30f8f8cSSatish Balay           This value should be the same as the local size used in creating the
2341a30f8f8cSSatish Balay           x vector for the matrix-vector product y = Ax.
234220f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
234320f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2344a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2345a30f8f8cSSatish Balay           submatrix (same for all local rows)
2346a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23476d10fdaeSSatish Balay           in the upper triangular portion of the in diagonal portion of the local
23482ef1f0ffSBarry Smith           (possibly different for each block block row) or `NULL`.
234995742e49SBarry Smith           If you plan to factor the matrix you must leave room for the diagonal entry and
235095742e49SBarry Smith           set its value even if it is zero.
2351a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2352a30f8f8cSSatish Balay           submatrix (same for all local rows).
2353a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2354a30f8f8cSSatish Balay           off-diagonal portion of the local submatrix (possibly different for
23552ef1f0ffSBarry Smith           each block row) or `NULL`.
2356a30f8f8cSSatish Balay 
2357a30f8f8cSSatish Balay   Output Parameter:
2358a30f8f8cSSatish Balay . A - the matrix
2359a30f8f8cSSatish Balay 
2360a30f8f8cSSatish Balay   Options Database Keys:
2361a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2362a30f8f8cSSatish Balay                     block calculations (much slower)
2363a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2364a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2365a30f8f8cSSatish Balay                     (defaults to using SeqBAIJ format on one processor)
2366a30f8f8cSSatish Balay 
23672ef1f0ffSBarry Smith   Level: intermediate
23682ef1f0ffSBarry Smith 
23692ef1f0ffSBarry Smith   Notes:
237077433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2371f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
237211a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2373175b88e8SBarry Smith 
2374d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
23756d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2376d1be2dadSMatthew Knepley 
2377a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2378a30f8f8cSSatish Balay   (possibly both).
2379a30f8f8cSSatish Balay 
238011a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2381a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2382a30f8f8cSSatish Balay 
2383727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by
2384727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
2385727bdf9bSBarry Smith 
238649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
238749a6f317SBarry Smith 
2388a30f8f8cSSatish Balay   Storage Information:
2389a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2390a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2391a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2392a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2393a30f8f8cSSatish Balay 
2394a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
23952ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
23962ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2397a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
23982ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2399a30f8f8cSSatish Balay 
2400a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2401a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2402a30f8f8cSSatish Balay 
2403a30f8f8cSSatish Balay .vb
2404a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2405a4b1a0f6SJed Brown           --------------------------
2406c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2407c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2408c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2409a4b1a0f6SJed Brown           --------------------------
2410a30f8f8cSSatish Balay .ve
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2413a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
24146d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
24152ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2416a30f8f8cSSatish Balay 
24172ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
24186d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
24192ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2420a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
24212ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2422a30f8f8cSSatish Balay 
2423727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`,
2424727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
2425a30f8f8cSSatish Balay @*/
2426d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2427d71ae5a4SJacob Faibussowitsch {
24281302d50aSBarry Smith   PetscMPIInt size;
2429a30f8f8cSSatish Balay 
2430a30f8f8cSSatish Balay   PetscFunctionBegin;
24319566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24329566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
24339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2434273d9f13SBarry Smith   if (size > 1) {
24359566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
24369566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2437273d9f13SBarry Smith   } else {
24389566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
24399566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2440273d9f13SBarry Smith   }
24413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2442a30f8f8cSSatish Balay }
2443a30f8f8cSSatish Balay 
2444d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2445d71ae5a4SJacob Faibussowitsch {
2446a30f8f8cSSatish Balay   Mat           mat;
2447a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2448d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2449387bc808SHong Zhang   PetscScalar  *array;
2450a30f8f8cSSatish Balay 
2451a30f8f8cSSatish Balay   PetscFunctionBegin;
2452f4259b30SLisandro Dalcin   *newmat = NULL;
245326fbe8dcSKarl Rupp 
24549566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24559566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24569566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2459e1b6402fSHong Zhang 
2460420957c1SBarry Smith   if (matin->hash_active) {
2461420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2462420957c1SBarry Smith   } else {
2463d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
2464273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
246582327fa8SHong Zhang     mat->assembled    = PETSC_TRUE;
24667fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
24677fff6886SHong Zhang 
2468b5df2d14SHong Zhang     a      = (Mat_MPISBAIJ *)mat->data;
2469a30f8f8cSSatish Balay     a->bs2 = oldmat->bs2;
2470a30f8f8cSSatish Balay     a->mbs = oldmat->mbs;
2471a30f8f8cSSatish Balay     a->nbs = oldmat->nbs;
2472a30f8f8cSSatish Balay     a->Mbs = oldmat->Mbs;
2473a30f8f8cSSatish Balay     a->Nbs = oldmat->Nbs;
2474a30f8f8cSSatish Balay 
2475a30f8f8cSSatish Balay     a->size         = oldmat->size;
2476a30f8f8cSSatish Balay     a->rank         = oldmat->rank;
2477a30f8f8cSSatish Balay     a->donotstash   = oldmat->donotstash;
2478a30f8f8cSSatish Balay     a->roworiented  = oldmat->roworiented;
2479f4259b30SLisandro Dalcin     a->rowindices   = NULL;
2480f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
2481a30f8f8cSSatish Balay     a->getrowactive = PETSC_FALSE;
2482f4259b30SLisandro Dalcin     a->barray       = NULL;
2483899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
2484899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
2485899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
2486899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
2487a30f8f8cSSatish Balay 
2488a30f8f8cSSatish Balay     /* hash table stuff */
2489f4259b30SLisandro Dalcin     a->ht           = NULL;
2490f4259b30SLisandro Dalcin     a->hd           = NULL;
2491a30f8f8cSSatish Balay     a->ht_size      = 0;
2492a30f8f8cSSatish Balay     a->ht_flag      = oldmat->ht_flag;
2493a30f8f8cSSatish Balay     a->ht_fact      = oldmat->ht_fact;
2494a30f8f8cSSatish Balay     a->ht_total_ct  = 0;
2495a30f8f8cSSatish Balay     a->ht_insert_ct = 0;
2496a30f8f8cSSatish Balay 
24979566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2498a30f8f8cSSatish Balay     if (oldmat->colmap) {
2499a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2500eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2501a30f8f8cSSatish Balay #else
25029566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
25039566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2504a30f8f8cSSatish Balay #endif
2505f4259b30SLisandro Dalcin     } else a->colmap = NULL;
2506387bc808SHong Zhang 
2507f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
25089566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
25099566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2510f4259b30SLisandro Dalcin     } else a->garray = NULL;
2511a30f8f8cSSatish Balay 
25129566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
25139566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
25149566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
251582327fa8SHong Zhang 
25169566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
25179566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2518387bc808SHong Zhang 
25199566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(a->slvec1, &nt));
25209566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec1, &array));
25219566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
25229566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
25239566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec1, &array));
25249566063dSJacob Faibussowitsch     PetscCall(VecGetArray(a->slvec0, &array));
25259566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
25269566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(a->slvec0, &array));
2527387bc808SHong Zhang 
2528387bc808SHong Zhang     /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25299566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2530387bc808SHong Zhang     a->sMvctx = oldmat->sMvctx;
253182327fa8SHong Zhang 
25329566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
25339566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
2534420957c1SBarry Smith   }
25359566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2536a30f8f8cSSatish Balay   *newmat = mat;
25373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2538a30f8f8cSSatish Balay }
2539a30f8f8cSSatish Balay 
2540618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2541618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2542618cc2edSLisandro Dalcin 
25436cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2544d71ae5a4SJacob Faibussowitsch {
25457f489da9SVaclav Hapla   PetscBool isbinary;
254695936485SShri Abhyankar 
254795936485SShri Abhyankar   PetscFunctionBegin;
25489566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25495f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25509566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
255295936485SShri Abhyankar }
255395936485SShri Abhyankar 
2554789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2555d71ae5a4SJacob Faibussowitsch {
255624d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2557f4f49eeaSPierre Jolivet   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)a->B->data;
2558ca54ac64SHong Zhang   PetscReal     atmp;
255987828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25601302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25611302d50aSBarry Smith   PetscMPIInt   rank, size;
25626497c311SBarry Smith   PetscInt     *rowners_bs, count, source;
256387828ca2SBarry Smith   PetscScalar  *va;
25648a1c53f2SBarry Smith   MatScalar    *ba;
2565f4c0e9e4SHong Zhang   MPI_Status    stat;
256624d5174aSHong Zhang 
256724d5174aSHong Zhang   PetscFunctionBegin;
25685f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25699566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25709566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2571f4c0e9e4SHong Zhang 
25729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2574f4c0e9e4SHong Zhang 
2575d0f46423SBarry Smith   bs  = A->rmap->bs;
2576f4c0e9e4SHong Zhang   mbs = a->mbs;
2577f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2578f4c0e9e4SHong Zhang   ba  = b->a;
2579f4c0e9e4SHong Zhang   bi  = b->i;
2580f4c0e9e4SHong Zhang   bj  = b->j;
2581f4c0e9e4SHong Zhang 
2582f4c0e9e4SHong Zhang   /* find ownerships */
2583d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2584f4c0e9e4SHong Zhang 
2585f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25869566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2587f4c0e9e4SHong Zhang 
2588f4c0e9e4SHong Zhang   /* row_max for B */
2589b8475685SHong Zhang   if (rank != size - 1) {
2590f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
25919371c9d4SSatish Balay       ncols = bi[1] - bi[0];
25929371c9d4SSatish Balay       bi++;
2593f4c0e9e4SHong Zhang       brow = bs * i;
2594f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2595f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2596f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2597ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
259804d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2599f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
26009371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
26019371c9d4SSatish Balay             ba++;
2602ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2603ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2604f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2605f4c0e9e4SHong Zhang           }
2606f4c0e9e4SHong Zhang         }
2607f4c0e9e4SHong Zhang         bj++;
2608f4c0e9e4SHong Zhang       }
2609f4c0e9e4SHong Zhang     }
2610f4c0e9e4SHong Zhang 
2611f4c0e9e4SHong Zhang     /* send values to its owners */
26126497c311SBarry Smith     for (PetscMPIInt dest = rank + 1; dest < size; dest++) {
2613f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2614ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
26156497c311SBarry Smith       PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2616ca54ac64SHong Zhang     }
2617f4c0e9e4SHong Zhang   }
2618f4c0e9e4SHong Zhang 
2619f4c0e9e4SHong Zhang   /* receive values */
2620ca54ac64SHong Zhang   if (rank) {
2621f4c0e9e4SHong Zhang     rvalues = work;
2622ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2623f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
26246497c311SBarry Smith       PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2625f4c0e9e4SHong Zhang       /* process values */
2626f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2627ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2628f4c0e9e4SHong Zhang       }
2629f4c0e9e4SHong Zhang     }
2630ca54ac64SHong Zhang   }
2631f4c0e9e4SHong Zhang 
26329566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
26339566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
26343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
263524d5174aSHong Zhang }
26362798e883SHong Zhang 
2637789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2638d71ae5a4SJacob Faibussowitsch {
26392798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2640d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
26413649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2642ffe4fb16SHong Zhang   Vec                bb1;
26433649974fSBarry Smith   const PetscScalar *b;
2644ffe4fb16SHong Zhang 
2645ffe4fb16SHong Zhang   PetscFunctionBegin;
26465f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26475f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2648ffe4fb16SHong Zhang 
2649a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26509566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26513ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2652a2b30743SBarry Smith   }
2653a2b30743SBarry Smith 
2654ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2655ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26569566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2657ffe4fb16SHong Zhang       its--;
2658ffe4fb16SHong Zhang     }
2659ffe4fb16SHong Zhang 
26609566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2661ffe4fb16SHong Zhang     while (its--) {
2662ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26639566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2664ffe4fb16SHong Zhang 
2665ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26669566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26679566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26689566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26699566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2670ffe4fb16SHong Zhang 
26719566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2672ffe4fb16SHong Zhang 
2673ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26749566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26769566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26779566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2678ffe4fb16SHong Zhang 
2679ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2680629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2681629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2682ffe4fb16SHong Zhang 
26839566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26849566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
26859566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26869566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2687ffe4fb16SHong Zhang 
2688ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26899566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2690ffe4fb16SHong Zhang 
2691ffe4fb16SHong Zhang       /* local diagonal sweep */
26929566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2693ffe4fb16SHong Zhang     }
26949566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2695fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26969566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2697fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26989566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2699fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2700fa22f6d0SBarry Smith     Vec                xx1;
2701ace3abfcSBarry Smith     PetscBool          hasop;
270220f1ed55SBarry Smith     const PetscScalar *diag;
2703887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
270420f1ed55SBarry Smith     PetscInt           i, n;
2705fa22f6d0SBarry Smith 
2706fa22f6d0SBarry Smith     if (!mat->xx1) {
27079566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
27089566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2709fa22f6d0SBarry Smith     }
2710fa22f6d0SBarry Smith     xx1 = mat->xx1;
2711fa22f6d0SBarry Smith     bb1 = mat->bb1;
2712fa22f6d0SBarry Smith 
27139566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2714fa22f6d0SBarry Smith 
2715fa22f6d0SBarry Smith     if (!mat->diag) {
2716effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27179566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
27189566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2719fa22f6d0SBarry Smith     }
27209566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2721fa22f6d0SBarry Smith 
2722fa22f6d0SBarry Smith     if (hasop) {
27239566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
27249566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
272520f1ed55SBarry Smith     } else {
272620f1ed55SBarry Smith       /*
272720f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
27289566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27299566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
273020f1ed55SBarry Smith       */
27319566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
27329566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
27339566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
27349566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
27359566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2736887ee2caSBarry Smith       if (omega == 1.0) {
273726fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
27389566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2739887ee2caSBarry Smith       } else {
274026fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
27419566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2742887ee2caSBarry Smith       }
27439566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
27449566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27459566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27469566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
274720f1ed55SBarry Smith     }
2748fa22f6d0SBarry Smith 
2749fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2750629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2751629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27529566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27539566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27549566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27559566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27569566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27579566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27589566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27599566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27609566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2761fa22f6d0SBarry Smith 
2762fa22f6d0SBarry Smith     /* local sweep */
27639566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27649566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2765f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2767ffe4fb16SHong Zhang }
2768ffe4fb16SHong Zhang 
2769dfb205c3SBarry Smith /*@
2770d8a51d2aSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows.
2771dfb205c3SBarry Smith 
2772d083f849SBarry Smith   Collective
2773dfb205c3SBarry Smith 
2774dfb205c3SBarry Smith   Input Parameters:
2775dfb205c3SBarry Smith + comm - MPI communicator
2776dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
277711a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2778dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
2779d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
27802ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
27812ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27822ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2783483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2784dfb205c3SBarry Smith . j    - column indices
2785dfb205c3SBarry Smith - a    - matrix values
2786dfb205c3SBarry Smith 
2787dfb205c3SBarry Smith   Output Parameter:
2788dfb205c3SBarry Smith . mat - the matrix
2789dfb205c3SBarry Smith 
2790dfb205c3SBarry Smith   Level: intermediate
2791dfb205c3SBarry Smith 
2792dfb205c3SBarry Smith   Notes:
27932ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
27942ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
27952ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2796dfb205c3SBarry Smith 
27972ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2798dfb205c3SBarry Smith 
27991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2800d8a51d2aSBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()`
2801dfb205c3SBarry Smith @*/
2802d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2803d71ae5a4SJacob Faibussowitsch {
2804dfb205c3SBarry Smith   PetscFunctionBegin;
28055f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
28065f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
28079566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
28089566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
28099566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
28109566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
28113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2812dfb205c3SBarry Smith }
2813dfb205c3SBarry Smith 
28145d83a8b1SBarry Smith /*@
281511a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2816dfb205c3SBarry Smith 
2817d083f849SBarry Smith   Collective
2818dfb205c3SBarry Smith 
2819dfb205c3SBarry Smith   Input Parameters:
28201c4f3114SJed Brown + B  - the matrix
2821dfb205c3SBarry Smith . bs - the block size
2822d8a51d2aSBarry Smith . i  - the indices into `j` for the start of each local row (indices start with zero)
2823d8a51d2aSBarry Smith . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
2824d8a51d2aSBarry Smith - v  - optional values in the matrix, pass `NULL` if not provided
2825dfb205c3SBarry Smith 
2826664954b6SBarry Smith   Level: advanced
2827664954b6SBarry Smith 
2828664954b6SBarry Smith   Notes:
2829d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2830d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2831d8a51d2aSBarry Smith   called this routine.
2832d8a51d2aSBarry Smith 
28330cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28340cd7f59aSBarry Smith   and usually the numerical values as well
28350cd7f59aSBarry Smith 
2836d8a51d2aSBarry Smith   Any entries passed in that are below the diagonal are ignored
2837dfb205c3SBarry Smith 
2838d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`,
2839d8a51d2aSBarry Smith           `MatCreateMPISBAIJWithArrays()`
2840dfb205c3SBarry Smith @*/
2841d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2842d71ae5a4SJacob Faibussowitsch {
2843dfb205c3SBarry Smith   PetscFunctionBegin;
2844cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2846dfb205c3SBarry Smith }
2847dfb205c3SBarry Smith 
2848d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2849d71ae5a4SJacob Faibussowitsch {
285010c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
285110c56fdeSHong Zhang   PetscInt    *indx;
285210c56fdeSHong Zhang   PetscScalar *values;
2853dfb205c3SBarry Smith 
28544dcd73b1SHong Zhang   PetscFunctionBegin;
28559566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
285610c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
285710c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2858de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
285910c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2860de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28614dcd73b1SHong Zhang 
28629566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28639371c9d4SSatish Balay     mbs = m / bs;
28649371c9d4SSatish Balay     Nbs = N / cbs;
286548a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2866da91a574SPierre Jolivet     nbs = n / cbs;
28674dcd73b1SHong Zhang 
28689566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2869d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2870de25e9cbSPierre Jolivet 
28719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28729566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2873de25e9cbSPierre Jolivet     if (rank == size - 1) {
2874de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28755f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2876de25e9cbSPierre Jolivet     }
2877de25e9cbSPierre Jolivet 
2878d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
288010c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
28819566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28824dcd73b1SHong Zhang       nnz = nnz / bs;
28834dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28849566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
28859566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28864dcd73b1SHong Zhang     }
28879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28889566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28894dcd73b1SHong Zhang 
28909566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
28919566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28929566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28939566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
28949566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28959566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2896d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
28974dcd73b1SHong Zhang   }
28984dcd73b1SHong Zhang 
289910c56fdeSHong Zhang   /* numeric phase */
29009566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
29019566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
29024dcd73b1SHong Zhang 
29039566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
29044dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
29059566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29064dcd73b1SHong Zhang     Ii = i + rstart;
29079566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
29089566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29094dcd73b1SHong Zhang   }
29109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
29119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
29129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
29133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29144dcd73b1SHong Zhang }
2915