1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237a30f8f8cSSatish Balay a_noinsert:; \ 238a30f8f8cSSatish Balay ailen[brow] = nrow; \ 239a8f51744SPierre Jolivet } while (0) 240e5e170daSBarry Smith 241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 242a8f51744SPierre Jolivet do { \ 243a30f8f8cSSatish Balay brow = row / bs; \ 2449371c9d4SSatish Balay rp = bj + bi[brow]; \ 2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2469371c9d4SSatish Balay rmax = bimax[brow]; \ 2479371c9d4SSatish Balay nrow = bilen[brow]; \ 248a30f8f8cSSatish Balay bcol = col / bs; \ 2499371c9d4SSatish Balay ridx = row % bs; \ 2509371c9d4SSatish Balay cidx = col % bs; \ 2519371c9d4SSatish Balay low = 0; \ 2529371c9d4SSatish Balay high = nrow; \ 253a30f8f8cSSatish Balay while (high - low > 3) { \ 254a30f8f8cSSatish Balay t = (low + high) / 2; \ 255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 256a30f8f8cSSatish Balay else low = t; \ 257a30f8f8cSSatish Balay } \ 258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 263a30f8f8cSSatish Balay else *bap = value; \ 264a30f8f8cSSatish Balay goto b_noinsert; \ 265a30f8f8cSSatish Balay } \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 270a30f8f8cSSatish Balay N = nrow++ - 1; \ 271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 275a30f8f8cSSatish Balay rp[_i] = bcol; \ 276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 277a30f8f8cSSatish Balay b_noinsert:; \ 278a30f8f8cSSatish Balay bilen[brow] = nrow; \ 279a8f51744SPierre Jolivet } while (0) 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 283a30f8f8cSSatish Balay */ 28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 285d71ae5a4SJacob Faibussowitsch { 286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 287a30f8f8cSSatish Balay MatScalar value; 288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2891302d50aSBarry Smith PetscInt i, j, row, col; 290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 293a30f8f8cSSatish Balay 294a30f8f8cSSatish Balay /* Some Variables required in the macro */ 295a30f8f8cSSatish Balay Mat A = baij->A; 29657508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 298a30f8f8cSSatish Balay MatScalar *aa = a->a; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay Mat B = baij->B; 30157508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 303a30f8f8cSSatish Balay MatScalar *ba = b->a; 304a30f8f8cSSatish Balay 3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 307a30f8f8cSSatish Balay MatScalar *ap, *bap; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay /* for stash */ 3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3110298fd71SBarry Smith MatScalar *v_loc = NULL; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314a30f8f8cSSatish Balay if (!baij->donotstash) { 31559ffdab8SBarry Smith if (n > baij->n_loc) { 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32026fbe8dcSKarl Rupp 32159ffdab8SBarry Smith baij->n_loc = n; 32259ffdab8SBarry Smith } 32359ffdab8SBarry Smith in_loc = baij->in_loc; 32459ffdab8SBarry Smith v_loc = baij->v_loc; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay 327a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 328a30f8f8cSSatish Balay if (im[i] < 0) continue; 3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 332a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33401b2bd88SHong Zhang if (a->ignore_ltriangular) { 33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33626fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33701b2bd88SHong Zhang } 338a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 339a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3409371c9d4SSatish Balay brow = row / bs; 3419371c9d4SSatish Balay bcol = col / bs; 342a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 343db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 344db4deed7SKarl Rupp else value = v[i + j * m]; 345d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3469566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 347f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 348f7d195e4SLawrence Mitchell continue; 349f7d195e4SLawrence Mitchell } else { 350f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 351f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 352a30f8f8cSSatish Balay if (mat->was_assembled) { 35348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 354a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 355eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35671730473SSatish Balay col = col - 1; 357a30f8f8cSSatish Balay #else 35871730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 359a30f8f8cSSatish Balay #endif 360f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3619566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 362a30f8f8cSSatish Balay col = in[j]; 363a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 364a30f8f8cSSatish Balay B = baij->B; 36557508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 3669371c9d4SSatish Balay bimax = b->imax; 3679371c9d4SSatish Balay bi = b->i; 3689371c9d4SSatish Balay bilen = b->ilen; 3699371c9d4SSatish Balay bj = b->j; 370a30f8f8cSSatish Balay ba = b->a; 37171730473SSatish Balay } else col += in[j] % bs; 372a30f8f8cSSatish Balay } else col = in[j]; 373db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 374db4deed7SKarl Rupp else value = v[i + j * m]; 375d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3769566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } 379a30f8f8cSSatish Balay } else { /* off processor entry */ 3805f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 381a30f8f8cSSatish Balay if (!baij->donotstash) { 3825080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 383a30f8f8cSSatish Balay n_loc = 0; 384a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 385f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 386a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 387a30f8f8cSSatish Balay if (roworiented) { 388a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 389a30f8f8cSSatish Balay } else { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay n_loc++; 393a30f8f8cSSatish Balay } 3949566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 3983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay 401d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 402d71ae5a4SJacob Faibussowitsch { 40336bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40436bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40536bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40636bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40736bd2089SBarry Smith PetscBool roworiented = a->roworiented; 40836bd2089SBarry Smith const PetscScalar *value = v; 40936bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41036bd2089SBarry Smith 41136bd2089SBarry Smith PetscFunctionBegin; 41236bd2089SBarry Smith if (col < row) { 4133ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp = aj + ai[row]; 41736bd2089SBarry Smith ap = aa + bs2 * ai[row]; 41836bd2089SBarry Smith rmax = imax[row]; 41936bd2089SBarry Smith nrow = ailen[row]; 42036bd2089SBarry Smith value = v; 42136bd2089SBarry Smith low = 0; 42236bd2089SBarry Smith high = nrow; 42336bd2089SBarry Smith 42436bd2089SBarry Smith while (high - low > 7) { 42536bd2089SBarry Smith t = (low + high) / 2; 42636bd2089SBarry Smith if (rp[t] > col) high = t; 42736bd2089SBarry Smith else low = t; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith for (i = low; i < high; i++) { 43036bd2089SBarry Smith if (rp[i] > col) break; 43136bd2089SBarry Smith if (rp[i] == col) { 43236bd2089SBarry Smith bap = ap + bs2 * i; 43336bd2089SBarry Smith if (roworiented) { 43436bd2089SBarry Smith if (is == ADD_VALUES) { 43536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 436ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43736bd2089SBarry Smith } 43836bd2089SBarry Smith } else { 43936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 440ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44136bd2089SBarry Smith } 44236bd2089SBarry Smith } 44336bd2089SBarry Smith } else { 44436bd2089SBarry Smith if (is == ADD_VALUES) { 44536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 446ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44736bd2089SBarry Smith } 44836bd2089SBarry Smith } else { 44936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 450ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } 45336bd2089SBarry Smith } 45436bd2089SBarry Smith goto noinsert2; 45536bd2089SBarry Smith } 45636bd2089SBarry Smith } 45736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4585f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 45936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4609371c9d4SSatish Balay N = nrow++ - 1; 4619371c9d4SSatish Balay high++; 46236bd2089SBarry Smith /* shift up all the later entries in this row */ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46536bd2089SBarry Smith rp[i] = col; 46636bd2089SBarry Smith bap = ap + bs2 * i; 46736bd2089SBarry Smith if (roworiented) { 46836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 469ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } else { 47236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 473ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith noinsert2:; 47736bd2089SBarry Smith ailen[row] = nrow; 4783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47936bd2089SBarry Smith } 48036bd2089SBarry Smith 48136bd2089SBarry Smith /* 48236bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48336bd2089SBarry Smith */ 484d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 485d71ae5a4SJacob Faibussowitsch { 48636bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48736bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 48836bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 48936bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49036bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49136bd2089SBarry Smith const PetscScalar *value = v; 49236bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49336bd2089SBarry Smith 49436bd2089SBarry Smith PetscFunctionBegin; 49536bd2089SBarry Smith rp = aj + ai[row]; 49636bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49736bd2089SBarry Smith rmax = imax[row]; 49836bd2089SBarry Smith nrow = ailen[row]; 49936bd2089SBarry Smith low = 0; 50036bd2089SBarry Smith high = nrow; 50136bd2089SBarry Smith value = v; 50236bd2089SBarry Smith while (high - low > 7) { 50336bd2089SBarry Smith t = (low + high) / 2; 50436bd2089SBarry Smith if (rp[t] > col) high = t; 50536bd2089SBarry Smith else low = t; 50636bd2089SBarry Smith } 50736bd2089SBarry Smith for (i = low; i < high; i++) { 50836bd2089SBarry Smith if (rp[i] > col) break; 50936bd2089SBarry Smith if (rp[i] == col) { 51036bd2089SBarry Smith bap = ap + bs2 * i; 51136bd2089SBarry Smith if (roworiented) { 51236bd2089SBarry Smith if (is == ADD_VALUES) { 51336bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 514ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51536bd2089SBarry Smith } 51636bd2089SBarry Smith } else { 51736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 518ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 51936bd2089SBarry Smith } 52036bd2089SBarry Smith } 52136bd2089SBarry Smith } else { 52236bd2089SBarry Smith if (is == ADD_VALUES) { 52336bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 524ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52536bd2089SBarry Smith bap += bs; 52636bd2089SBarry Smith } 52736bd2089SBarry Smith } else { 52836bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 529ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53036bd2089SBarry Smith bap += bs; 53136bd2089SBarry Smith } 53236bd2089SBarry Smith } 53336bd2089SBarry Smith } 53436bd2089SBarry Smith goto noinsert2; 53536bd2089SBarry Smith } 53636bd2089SBarry Smith } 53736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5385f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 53936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5409371c9d4SSatish Balay N = nrow++ - 1; 5419371c9d4SSatish Balay high++; 54236bd2089SBarry Smith /* shift up all the later entries in this row */ 5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5449566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54536bd2089SBarry Smith rp[i] = col; 54636bd2089SBarry Smith bap = ap + bs2 * i; 54736bd2089SBarry Smith if (roworiented) { 54836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 549ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55036bd2089SBarry Smith } 55136bd2089SBarry Smith } else { 55236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 553ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55436bd2089SBarry Smith } 55536bd2089SBarry Smith } 55636bd2089SBarry Smith noinsert2:; 55736bd2089SBarry Smith ailen[row] = nrow; 5583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55936bd2089SBarry Smith } 56036bd2089SBarry Smith 56136bd2089SBarry Smith /* 56236bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56336bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56436bd2089SBarry Smith */ 56566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 566d71ae5a4SJacob Faibussowitsch { 5670880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 568f15d580aSBarry Smith const MatScalar *value; 569f15d580aSBarry Smith MatScalar *barray = baij->barray; 570ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 571899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 572476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 573476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5740880e062SHong Zhang 575a30f8f8cSSatish Balay PetscFunctionBegin; 5760880e062SHong Zhang if (!barray) { 5779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5780880e062SHong Zhang baij->barray = barray; 5790880e062SHong Zhang } 5800880e062SHong Zhang 5810880e062SHong Zhang if (roworiented) { 5820880e062SHong Zhang stepval = (n - 1) * bs; 5830880e062SHong Zhang } else { 5840880e062SHong Zhang stepval = (m - 1) * bs; 5850880e062SHong Zhang } 5860880e062SHong Zhang for (i = 0; i < m; i++) { 5870880e062SHong Zhang if (im[i] < 0) continue; 5886bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5890880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5900880e062SHong Zhang row = im[i] - rstart; 5910880e062SHong Zhang for (j = 0; j < n; j++) { 592f3f98c53SJed Brown if (im[i] > in[j]) { 593f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 594e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 595f3f98c53SJed Brown } 5960880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5970880e062SHong Zhang if ((roworiented) && (n == 1)) { 598f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5990880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6010880e062SHong Zhang } else { /* Here a copy is required */ 6020880e062SHong Zhang if (roworiented) { 6030880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6040880e062SHong Zhang } else { 6050880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6060880e062SHong Zhang } 6070880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 608ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6090880e062SHong Zhang } 6100880e062SHong Zhang barray -= bs2; 6110880e062SHong Zhang } 6120880e062SHong Zhang 6130880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6140880e062SHong Zhang col = in[j] - cstart; 6159566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 616f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 617f7d195e4SLawrence Mitchell continue; 618f7d195e4SLawrence Mitchell } else { 619f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6200880e062SHong Zhang if (mat->was_assembled) { 62148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6220880e062SHong Zhang 6230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 624eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 625b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 6260880e062SHong Zhang #else 627b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 6280880e062SHong Zhang #endif 629f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6309566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6310880e062SHong Zhang col = in[j]; 6320880e062SHong Zhang } 63326fbe8dcSKarl Rupp } else col = in[j]; 6349566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6350880e062SHong Zhang } 6360880e062SHong Zhang } 6370880e062SHong Zhang } else { 6385f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6390880e062SHong Zhang if (!baij->donotstash) { 6400880e062SHong Zhang if (roworiented) { 6419566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6420880e062SHong Zhang } else { 6439566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6440880e062SHong Zhang } 6450880e062SHong Zhang } 6460880e062SHong Zhang } 6470880e062SHong Zhang } 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 65166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 652d71ae5a4SJacob Faibussowitsch { 653f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 654d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 655d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay PetscFunctionBegin; 658a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 65954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 661a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 662a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 663a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 66454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 666a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 667a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6689566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 669a30f8f8cSSatish Balay } else { 67048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 671a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 672eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 673a30f8f8cSSatish Balay data--; 674a30f8f8cSSatish Balay #else 675a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 676a30f8f8cSSatish Balay #endif 677a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 678a30f8f8cSSatish Balay else { 679a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6809566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 684f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 685a30f8f8cSSatish Balay } 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay 68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 690d71ae5a4SJacob Faibussowitsch { 691a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 692a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 693a30f8f8cSSatish Balay 694a30f8f8cSSatish Balay PetscFunctionBegin; 695a30f8f8cSSatish Balay if (baij->size == 1) { 6969566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 697a30f8f8cSSatish Balay } else { 698a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7019371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7029371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7039566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7049371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7059371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 706462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7078f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7090b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7100b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7110b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 712e91c04dfSPierre Jolivet PetscReal *rsum, vabs; 713899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 714d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7150b8dc8d2SHong Zhang MatScalar *v; 7160b8dc8d2SHong Zhang 717e91c04dfSPierre Jolivet PetscCall(PetscMalloc1(mat->cmap->N, &rsum)); 7189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7190b8dc8d2SHong Zhang /* Amat */ 7209371c9d4SSatish Balay v = amat->a; 7219371c9d4SSatish Balay jj = amat->j; 7220b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7230b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7240b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7250b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7269371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7279371c9d4SSatish Balay jj++; 7280b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7290b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7309371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7319371c9d4SSatish Balay v++; 7320b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7330b8dc8d2SHong Zhang /* non-diagonal block */ 7340b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7350b8dc8d2SHong Zhang } 7360b8dc8d2SHong Zhang } 7370b8dc8d2SHong Zhang } 7389566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7390b8dc8d2SHong Zhang } 7400b8dc8d2SHong Zhang /* Bmat */ 7419371c9d4SSatish Balay v = bmat->a; 7429371c9d4SSatish Balay jj = bmat->j; 7430b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7440b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7450b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7460b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7479371c9d4SSatish Balay gcol = bs * garray[*jj]; 7489371c9d4SSatish Balay jj++; 7490b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7500b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7519371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7529371c9d4SSatish Balay v++; 7530b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7540b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7550b8dc8d2SHong Zhang } 7560b8dc8d2SHong Zhang } 7570b8dc8d2SHong Zhang } 7589566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7590b8dc8d2SHong Zhang } 760e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7610b8dc8d2SHong Zhang *norm = 0.0; 762d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 763e91c04dfSPierre Jolivet if (rsum[col] > *norm) *norm = rsum[col]; 7640b8dc8d2SHong Zhang } 765e91c04dfSPierre Jolivet PetscCall(PetscFree(rsum)); 766f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 767a30f8f8cSSatish Balay } 7683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay 77166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 772d71ae5a4SJacob Faibussowitsch { 773a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7741302d50aSBarry Smith PetscInt nstash, reallocs; 775a30f8f8cSSatish Balay 776a30f8f8cSSatish Balay PetscFunctionBegin; 7773ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 778a30f8f8cSSatish Balay 7799566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7809566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7819566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7829566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7839566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7849566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 786a30f8f8cSSatish Balay } 787a30f8f8cSSatish Balay 78866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 789d71ae5a4SJacob Faibussowitsch { 790a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 791a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 79213f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 793e44c0bd4SBarry Smith PetscInt *row, *col; 794ace3abfcSBarry Smith PetscBool other_disassembled; 79513f74950SBarry Smith PetscMPIInt n; 796ace3abfcSBarry Smith PetscBool r1, r2, r3; 797a30f8f8cSSatish Balay MatScalar *val; 798a30f8f8cSSatish Balay 79991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 800a30f8f8cSSatish Balay PetscFunctionBegin; 8014cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 802a30f8f8cSSatish Balay while (1) { 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 804a30f8f8cSSatish Balay if (!flg) break; 805a30f8f8cSSatish Balay 806a30f8f8cSSatish Balay for (i = 0; i < n;) { 807a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 80826fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 80926fbe8dcSKarl Rupp if (row[j] != rstart) break; 81026fbe8dcSKarl Rupp } 811a30f8f8cSSatish Balay if (j < n) ncols = j - i; 812a30f8f8cSSatish Balay else ncols = n - i; 813a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 815a30f8f8cSSatish Balay i = j; 816a30f8f8cSSatish Balay } 817a30f8f8cSSatish Balay } 8189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 819a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8205e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 821a30f8f8cSSatish Balay restore the original flags */ 822a30f8f8cSSatish Balay r1 = baij->roworiented; 823a30f8f8cSSatish Balay r2 = a->roworiented; 82491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 82526fbe8dcSKarl Rupp 826a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 827a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 82826fbe8dcSKarl Rupp 82991c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 830a30f8f8cSSatish Balay while (1) { 8319566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 832a30f8f8cSSatish Balay if (!flg) break; 833a30f8f8cSSatish Balay 834a30f8f8cSSatish Balay for (i = 0; i < n;) { 835a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 83626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 83726fbe8dcSKarl Rupp if (row[j] != rstart) break; 83826fbe8dcSKarl Rupp } 839a30f8f8cSSatish Balay if (j < n) ncols = j - i; 840a30f8f8cSSatish Balay else ncols = n - i; 8419566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 842a30f8f8cSSatish Balay i = j; 843a30f8f8cSSatish Balay } 844a30f8f8cSSatish Balay } 8459566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 84626fbe8dcSKarl Rupp 847a30f8f8cSSatish Balay baij->roworiented = r1; 848a30f8f8cSSatish Balay a->roworiented = r2; 84926fbe8dcSKarl Rupp 85091c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay 8539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8549566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 855a30f8f8cSSatish Balay 856a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8576aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 858a30f8f8cSSatish Balay /* 859a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 860a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 861a30f8f8cSSatish Balay */ 862a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 863462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 86448a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 865a30f8f8cSSatish Balay } 866a30f8f8cSSatish Balay 8679371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 870a30f8f8cSSatish Balay 8719566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 87226fbe8dcSKarl Rupp 873f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8744f9cfa9eSBarry Smith 8754f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 876f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 877e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 878462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 879e56f5c9eSBarry Smith } 8803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 881a30f8f8cSSatish Balay } 882a30f8f8cSSatish Balay 883dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8849804daf3SBarry Smith #include <petscdraw.h> 885d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 886d71ae5a4SJacob Faibussowitsch { 887a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 888d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8897da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 890ace3abfcSBarry Smith PetscBool iascii, isdraw; 891b0a32e0cSBarry Smith PetscViewer sviewer; 892f3ef73ceSBarry Smith PetscViewerFormat format; 893a30f8f8cSSatish Balay 894a30f8f8cSSatish Balay PetscFunctionBegin; 8959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8969566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 89732077d6dSBarry Smith if (iascii) { 8989566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 899456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 900a30f8f8cSSatish Balay MatInfo info; 9019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9029566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9049371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 905835f2295SStefano Zampini mat->rmap->bs, info.memory)); 9069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9139566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 915fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 918c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 920a30f8f8cSSatish Balay } 921a30f8f8cSSatish Balay } 922a30f8f8cSSatish Balay 923a30f8f8cSSatish Balay if (isdraw) { 924b0a32e0cSBarry Smith PetscDraw draw; 925ace3abfcSBarry Smith PetscBool isnull; 9269566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9279566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9283ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 929a30f8f8cSSatish Balay } 930a30f8f8cSSatish Balay 9317da1fb6eSBarry Smith { 932a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 933a30f8f8cSSatish Balay Mat A; 93465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 93565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 936d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 937a30f8f8cSSatish Balay MatScalar *a; 9383e219373SBarry Smith const char *matname; 939a30f8f8cSSatish Balay 940f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9419566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 942dd400576SPatrick Sanan if (rank == 0) { 9439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 944a30f8f8cSSatish Balay } else { 9459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 946a30f8f8cSSatish Balay } 9479566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9489566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9499566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 950a30f8f8cSSatish Balay 951a30f8f8cSSatish Balay /* copy over the A part */ 95265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9539371c9d4SSatish Balay ai = Aloc->i; 9549371c9d4SSatish Balay aj = Aloc->j; 9559371c9d4SSatish Balay a = Aloc->a; 9569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 957a30f8f8cSSatish Balay 958a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 959e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 96026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 961a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 962e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 963a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9649566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 96526fbe8dcSKarl Rupp col++; 96626fbe8dcSKarl Rupp a += bs; 967a30f8f8cSSatish Balay } 968a30f8f8cSSatish Balay } 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay /* copy over the B part */ 97165d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9729371c9d4SSatish Balay ai = Bloc->i; 9739371c9d4SSatish Balay aj = Bloc->j; 9749371c9d4SSatish Balay a = Bloc->a; 975a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 976e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97726fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 978a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 979a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 980a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9819566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 98226fbe8dcSKarl Rupp col++; 98326fbe8dcSKarl Rupp a += bs; 984a30f8f8cSSatish Balay } 985a30f8f8cSSatish Balay } 986a30f8f8cSSatish Balay } 9879566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 990a30f8f8cSSatish Balay /* 991a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 992b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 993a30f8f8cSSatish Balay */ 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 99523a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 996dd400576SPatrick Sanan if (rank == 0) { 997f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 998f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 999a30f8f8cSSatish Balay } 10009566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10019566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1002a30f8f8cSSatish Balay } 10033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1004a30f8f8cSSatish Balay } 1005a30f8f8cSSatish Balay 1006618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1007618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1008d1654148SHong Zhang 100966976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1010d71ae5a4SJacob Faibussowitsch { 1011ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1012a30f8f8cSSatish Balay 1013a30f8f8cSSatish Balay PetscFunctionBegin; 10149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1018d1654148SHong Zhang if (iascii || isdraw || issocket) { 10199566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10201baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay 1024789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1025789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1026d71ae5a4SJacob Faibussowitsch { 1027547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1028eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10296de40e93SBarry Smith PetscScalar *from; 10306de40e93SBarry Smith const PetscScalar *x; 1031547795f9SHong Zhang 1032547795f9SHong Zhang PetscFunctionBegin; 1033547795f9SHong Zhang /* diagonal part */ 10349566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1035629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1036629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1037629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1038547795f9SHong Zhang 1039547795f9SHong Zhang /* subdiagonal part */ 10405f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10419566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1042547795f9SHong Zhang 1043547795f9SHong Zhang /* copy x into the vec slvec0 */ 10449566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1046547795f9SHong Zhang 10479566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1050547795f9SHong Zhang 10519566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10529566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1053547795f9SHong Zhang /* supperdiagonal part */ 10549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1056547795f9SHong Zhang } 1057789afff4SPierre Jolivet #endif 1058547795f9SHong Zhang 105966976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1060d71ae5a4SJacob Faibussowitsch { 1061a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1062eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1063d9ca1df4SBarry Smith PetscScalar *from; 1064d9ca1df4SBarry Smith const PetscScalar *x; 1065a9d4b620SHong Zhang 1066a9d4b620SHong Zhang PetscFunctionBegin; 1067a9d4b620SHong Zhang /* diagonal part */ 10689566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1069629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1070629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1071629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1072a9d4b620SHong Zhang 1073a9d4b620SHong Zhang /* subdiagonal part */ 10749566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1075fc165ae2SBarry Smith 1076a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10779566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10789566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1079a9d4b620SHong Zhang 10809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1083fc165ae2SBarry Smith 10849566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1086a9d4b620SHong Zhang /* supperdiagonal part */ 10879566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1089a9d4b620SHong Zhang } 1090a9d4b620SHong Zhang 109166976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 109266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1093d71ae5a4SJacob Faibussowitsch { 1094eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1095eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1096629a200eSBarry Smith PetscScalar *from; 1097eb1ec7c1SStefano Zampini const PetscScalar *x; 1098eb1ec7c1SStefano Zampini 1099eb1ec7c1SStefano Zampini PetscFunctionBegin; 1100eb1ec7c1SStefano Zampini /* diagonal part */ 11019566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1102629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1103629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1104eb1ec7c1SStefano Zampini 1105eb1ec7c1SStefano Zampini /* subdiagonal part */ 11065f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11079566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1108eb1ec7c1SStefano Zampini 1109eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11109566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11119566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11129566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1114eb1ec7c1SStefano Zampini 11159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11179566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1118eb1ec7c1SStefano Zampini 1119eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11209566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1122eb1ec7c1SStefano Zampini } 112366976f2fSJacob Faibussowitsch #endif 1124eb1ec7c1SStefano Zampini 112566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1126d71ae5a4SJacob Faibussowitsch { 1127de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1128d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1129629a200eSBarry Smith PetscScalar *from; 1130d9ca1df4SBarry Smith const PetscScalar *x; 1131a9d4b620SHong Zhang 1132a9d4b620SHong Zhang PetscFunctionBegin; 1133a9d4b620SHong Zhang /* diagonal part */ 11349566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1135629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1136629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1137a9d4b620SHong Zhang 1138a9d4b620SHong Zhang /* subdiagonal part */ 11399566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1140a9d4b620SHong Zhang 1141a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11429566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11439566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1146a9d4b620SHong Zhang 11479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11499566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1150a9d4b620SHong Zhang 1151a9d4b620SHong Zhang /* supperdiagonal part */ 11529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1154a9d4b620SHong Zhang } 1155a9d4b620SHong Zhang 1156a30f8f8cSSatish Balay /* 1157a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1158a30f8f8cSSatish Balay diagonal block 1159a30f8f8cSSatish Balay */ 116066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1161d71ae5a4SJacob Faibussowitsch { 1162a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1163a30f8f8cSSatish Balay 1164a30f8f8cSSatish Balay PetscFunctionBegin; 116508401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11669566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1168a30f8f8cSSatish Balay } 1169a30f8f8cSSatish Balay 117066976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1171d71ae5a4SJacob Faibussowitsch { 1172a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1173a30f8f8cSSatish Balay 1174a30f8f8cSSatish Balay PetscFunctionBegin; 11759566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11769566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1178a30f8f8cSSatish Balay } 1179a30f8f8cSSatish Balay 118066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1181d71ae5a4SJacob Faibussowitsch { 1182d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1183d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1184d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1185d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1186899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1187d0d4cfc2SHong Zhang 1188a30f8f8cSSatish Balay PetscFunctionBegin; 11895f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1190d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1191d0d4cfc2SHong Zhang 1192d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1193d0d4cfc2SHong Zhang /* 1194d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1195d0d4cfc2SHong Zhang */ 1196d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1197d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1198d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1199d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1200d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 120126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1202d0d4cfc2SHong Zhang } 12039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1204d0d4cfc2SHong Zhang } 1205d0d4cfc2SHong Zhang 12065f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1207d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1208d0d4cfc2SHong Zhang 12099371c9d4SSatish Balay pvA = &vworkA; 12109371c9d4SSatish Balay pcA = &cworkA; 12119371c9d4SSatish Balay pvB = &vworkB; 12129371c9d4SSatish Balay pcB = &cworkB; 12139371c9d4SSatish Balay if (!v) { 12149371c9d4SSatish Balay pvA = NULL; 12159371c9d4SSatish Balay pvB = NULL; 12169371c9d4SSatish Balay } 12179371c9d4SSatish Balay if (!idx) { 12189371c9d4SSatish Balay pcA = NULL; 12199371c9d4SSatish Balay if (!v) pcB = NULL; 12209371c9d4SSatish Balay } 12219566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12229566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1223d0d4cfc2SHong Zhang nztot = nzA + nzB; 1224d0d4cfc2SHong Zhang 1225d0d4cfc2SHong Zhang cmap = mat->garray; 1226d0d4cfc2SHong Zhang if (v || idx) { 1227d0d4cfc2SHong Zhang if (nztot) { 1228d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1229d0d4cfc2SHong Zhang PetscInt imark = -1; 1230d0d4cfc2SHong Zhang if (v) { 1231d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1232d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1233d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1234d0d4cfc2SHong Zhang else break; 1235d0d4cfc2SHong Zhang } 1236d0d4cfc2SHong Zhang imark = i; 1237d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1238d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang if (idx) { 1241d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1242d0d4cfc2SHong Zhang if (imark > -1) { 1243ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1244d0d4cfc2SHong Zhang } else { 1245d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 124626fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1247d0d4cfc2SHong Zhang else break; 1248d0d4cfc2SHong Zhang } 1249d0d4cfc2SHong Zhang imark = i; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1252d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1253d0d4cfc2SHong Zhang } 1254d0d4cfc2SHong Zhang } else { 1255f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1256f4259b30SLisandro Dalcin if (v) *v = NULL; 1257d0d4cfc2SHong Zhang } 1258d0d4cfc2SHong Zhang } 1259d0d4cfc2SHong Zhang *nz = nztot; 12609566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12619566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1263a30f8f8cSSatish Balay } 1264a30f8f8cSSatish Balay 126566976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1266d71ae5a4SJacob Faibussowitsch { 1267a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1268a30f8f8cSSatish Balay 1269a30f8f8cSSatish Balay PetscFunctionBegin; 12705f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1271a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1273a30f8f8cSSatish Balay } 1274a30f8f8cSSatish Balay 127566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1276d71ae5a4SJacob Faibussowitsch { 1277d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1278d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1279d0d4cfc2SHong Zhang 1280d0d4cfc2SHong Zhang PetscFunctionBegin; 1281d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1283d0d4cfc2SHong Zhang } 128466976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1285d71ae5a4SJacob Faibussowitsch { 1286d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1287d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1288d0d4cfc2SHong Zhang 1289d0d4cfc2SHong Zhang PetscFunctionBegin; 1290d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 12913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1292d0d4cfc2SHong Zhang } 1293d0d4cfc2SHong Zhang 129466976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1295d71ae5a4SJacob Faibussowitsch { 12965f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12975f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 12982726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 12992726fb6dSPierre Jolivet 13009566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13019566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13025f80ce2aSJacob Faibussowitsch } 13033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13042726fb6dSPierre Jolivet } 13052726fb6dSPierre Jolivet 130666976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1307d71ae5a4SJacob Faibussowitsch { 130899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 130999cafbc1SBarry Smith 131099cafbc1SBarry Smith PetscFunctionBegin; 13119566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13129566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131499cafbc1SBarry Smith } 131599cafbc1SBarry Smith 131666976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1317d71ae5a4SJacob Faibussowitsch { 131899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131999cafbc1SBarry Smith 132099cafbc1SBarry Smith PetscFunctionBegin; 13219566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13229566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132499cafbc1SBarry Smith } 132599cafbc1SBarry Smith 13267dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 132736032a97SHong Zhang Input: isrow - distributed(parallel), 132836032a97SHong Zhang iscol_local - locally owned (seq) 132936032a97SHong Zhang */ 133066976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1331d71ae5a4SJacob Faibussowitsch { 13328f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13338f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 133436032a97SHong Zhang 133536032a97SHong Zhang PetscFunctionBegin; 133666976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 133966976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13408f46ffcaSHong Zhang 13419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13438f46ffcaSHong Zhang 13449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13479566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13489566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13499566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13508f46ffcaSHong Zhang 13518f46ffcaSHong Zhang nmatch = 0; 13528f46ffcaSHong Zhang k = 0; 13538f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13548f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13558f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13569371c9d4SSatish Balay k = j; 13579371c9d4SSatish Balay nmatch++; 13588f46ffcaSHong Zhang break; 13598f46ffcaSHong Zhang } 13608f46ffcaSHong Zhang } 13618f46ffcaSHong Zhang } 13629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13649566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13659566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13661098a8e8SHong Zhang if (nmatch < sz1) { 13671098a8e8SHong Zhang *flg = PETSC_FALSE; 13681098a8e8SHong Zhang } else { 13691098a8e8SHong Zhang *flg = PETSC_TRUE; 13701098a8e8SHong Zhang } 13713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13728f46ffcaSHong Zhang } 137336032a97SHong Zhang 137466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1375d71ae5a4SJacob Faibussowitsch { 1376fdfbdca6SPierre Jolivet Mat C[2]; 1377fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1378fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1379fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 138036032a97SHong Zhang 138136032a97SHong Zhang PetscFunctionBegin; 13829566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1383fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 138436032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13865f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 138736032a97SHong Zhang } else { 13889566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13899566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1390fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 13918f46ffcaSHong Zhang } 1392fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1393fdfbdca6SPierre Jolivet if (!isequal) { 1394fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1395fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1396fdfbdca6SPierre Jolivet if (!isidentity) { 1397fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1398fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1399fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1400fdfbdca6SPierre Jolivet } else { 1401fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1402fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1403fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1404fdfbdca6SPierre Jolivet } 1405fdfbdca6SPierre Jolivet } 1406fdfbdca6SPierre Jolivet } 14077dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1408fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1409fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14108f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1411fdfbdca6SPierre Jolivet IS intersect; 1412fdfbdca6SPierre Jolivet PetscInt ni; 1413fdfbdca6SPierre Jolivet 1414fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1415fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1416fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1417fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1418fdfbdca6SPierre Jolivet } 1419fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1420fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1421fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1422fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1423fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1424fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1425fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1426fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1427fdfbdca6SPierre Jolivet } 1428fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1429fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1430fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1431fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1432fdfbdca6SPierre Jolivet } 14339566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14358f46ffcaSHong Zhang } 14363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14378f46ffcaSHong Zhang } 14388f46ffcaSHong Zhang 143966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1440d71ae5a4SJacob Faibussowitsch { 1441a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1442a30f8f8cSSatish Balay 1443a30f8f8cSSatish Balay PetscFunctionBegin; 14449566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14459566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1447a30f8f8cSSatish Balay } 1448a30f8f8cSSatish Balay 144966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1450d71ae5a4SJacob Faibussowitsch { 1451a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1452a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14533966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1454a30f8f8cSSatish Balay 1455a30f8f8cSSatish Balay PetscFunctionBegin; 1456d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145726fbe8dcSKarl Rupp 14589566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 145926fbe8dcSKarl Rupp 14609371c9d4SSatish Balay isend[0] = info->nz_used; 14619371c9d4SSatish Balay isend[1] = info->nz_allocated; 14629371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14639371c9d4SSatish Balay isend[3] = info->memory; 14649371c9d4SSatish Balay isend[4] = info->mallocs; 146526fbe8dcSKarl Rupp 14669566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 146726fbe8dcSKarl Rupp 14689371c9d4SSatish Balay isend[0] += info->nz_used; 14699371c9d4SSatish Balay isend[1] += info->nz_allocated; 14709371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14719371c9d4SSatish Balay isend[3] += info->memory; 14729371c9d4SSatish Balay isend[4] += info->mallocs; 1473a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1474a30f8f8cSSatish Balay info->nz_used = isend[0]; 1475a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1476a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1477a30f8f8cSSatish Balay info->memory = isend[3]; 1478a30f8f8cSSatish Balay info->mallocs = isend[4]; 1479a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1480462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 148126fbe8dcSKarl Rupp 1482a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1483a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1484a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1485a30f8f8cSSatish Balay info->memory = irecv[3]; 1486a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1487a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1488462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 148926fbe8dcSKarl Rupp 1490a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1491a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1492a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1493a30f8f8cSSatish Balay info->memory = irecv[3]; 1494a30f8f8cSSatish Balay info->mallocs = irecv[4]; 149598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1496a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1497a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1498a30f8f8cSSatish Balay info->factor_mallocs = 0; 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1500a30f8f8cSSatish Balay } 1501a30f8f8cSSatish Balay 150266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1503d71ae5a4SJacob Faibussowitsch { 1504a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1505d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1506a30f8f8cSSatish Balay 1507a30f8f8cSSatish Balay PetscFunctionBegin; 1508e98b92d7SKris Buschelman switch (op) { 1509512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1510e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 151128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1512a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1513e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 151443674050SBarry Smith MatCheckPreallocated(A, 1); 15159566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15169566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1517e98b92d7SKris Buschelman break; 1518e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 151943674050SBarry Smith MatCheckPreallocated(A, 1); 15204e0d8c25SBarry Smith a->roworiented = flg; 152126fbe8dcSKarl Rupp 15229566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15239566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1524e98b92d7SKris Buschelman break; 1525d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1526d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1527d71ae5a4SJacob Faibussowitsch break; 1528d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1529d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1530d71ae5a4SJacob Faibussowitsch break; 1531d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 15329725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 15330f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1534eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1535547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1536eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1537eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1538eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1539b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1540eb1ec7c1SStefano Zampini } 15410f2140c7SStefano Zampini #endif 1542eeffb40dSHong Zhang break; 1543ffa07934SHong Zhang case MAT_SPD: 1544d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 15459725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1546eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1547eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1548eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1549eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1550eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1551eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1552eb1ec7c1SStefano Zampini } 1553eb1ec7c1SStefano Zampini #endif 1554eeffb40dSHong Zhang break; 155577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15569725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1557eeffb40dSHong Zhang break; 1558d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1559d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1560d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1561d71ae5a4SJacob Faibussowitsch break; 1562d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1563d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1564d71ae5a4SJacob Faibussowitsch break; 1565d71ae5a4SJacob Faibussowitsch default: 1566888c827cSStefano Zampini break; 1567a30f8f8cSSatish Balay } 15683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1569a30f8f8cSSatish Balay } 1570a30f8f8cSSatish Balay 157166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1572d71ae5a4SJacob Faibussowitsch { 1573a30f8f8cSSatish Balay PetscFunctionBegin; 15747fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1575cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15769566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1577cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15789566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1579fc4dec0aSBarry Smith } 15803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1581a30f8f8cSSatish Balay } 1582a30f8f8cSSatish Balay 158366976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1584d71ae5a4SJacob Faibussowitsch { 1585a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1586a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 15875e90f9d9SHong Zhang PetscInt nv, m, n; 1588ace3abfcSBarry Smith PetscBool flg; 1589a30f8f8cSSatish Balay 1590a30f8f8cSSatish Balay PetscFunctionBegin; 1591a30f8f8cSSatish Balay if (ll != rr) { 15929566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 15935f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1594a30f8f8cSSatish Balay } 15953ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1596b3bf805bSHong Zhang 15979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 15985f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1599b3bf805bSHong Zhang 16009566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 16015f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 16025e90f9d9SHong Zhang 16039566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16045e90f9d9SHong Zhang 16055e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1606dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16075e90f9d9SHong Zhang 16085e90f9d9SHong Zhang /* scale the diagonal part */ 1609dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1610a30f8f8cSSatish Balay 16115e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16129566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1613dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1615a30f8f8cSSatish Balay } 1616a30f8f8cSSatish Balay 161766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1618d71ae5a4SJacob Faibussowitsch { 1619f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1620a30f8f8cSSatish Balay 1621a30f8f8cSSatish Balay PetscFunctionBegin; 16229566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1624a30f8f8cSSatish Balay } 1625a30f8f8cSSatish Balay 16266849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1627a30f8f8cSSatish Balay 162866976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1629d71ae5a4SJacob Faibussowitsch { 1630a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1631a30f8f8cSSatish Balay Mat a, b, c, d; 1632ace3abfcSBarry Smith PetscBool flg; 1633a30f8f8cSSatish Balay 1634a30f8f8cSSatish Balay PetscFunctionBegin; 16359371c9d4SSatish Balay a = matA->A; 16369371c9d4SSatish Balay b = matA->B; 16379371c9d4SSatish Balay c = matB->A; 16389371c9d4SSatish Balay d = matB->B; 1639a30f8f8cSSatish Balay 16409566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 164148a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1642462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1644a30f8f8cSSatish Balay } 1645a30f8f8cSSatish Balay 164666976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1647d71ae5a4SJacob Faibussowitsch { 16484c7a3774SStefano Zampini PetscBool isbaij; 16493c896bc6SHong Zhang 16503c896bc6SHong Zhang PetscFunctionBegin; 16519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16525f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16533c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16543c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16559566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16569566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16579566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16583c896bc6SHong Zhang } else { 16594c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16604c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16614c7a3774SStefano Zampini 16629566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16639566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16643c896bc6SHong Zhang } 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16673c896bc6SHong Zhang } 16683c896bc6SHong Zhang 166966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1670d71ae5a4SJacob Faibussowitsch { 16714fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16724fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16734fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16744fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16754fe895cdSHong Zhang 16764fe895cdSHong Zhang PetscFunctionBegin; 16774fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16784fe895cdSHong Zhang PetscScalar alpha = a; 16794fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16804fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16819566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1682792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16834fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16844fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16859566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1686792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 16879566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1688ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 16899566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 16909566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 16919566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 16924fe895cdSHong Zhang } else { 16934de5dceeSHong Zhang Mat B; 16944de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 16955f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 16969566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 16979566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 16989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 16999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 17009566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 17029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17049566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17059566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17069566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17079566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17089566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17099566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17109566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17119566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17129566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17139566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17144fe895cdSHong Zhang } 17153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17164fe895cdSHong Zhang } 17174fe895cdSHong Zhang 171866976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1719d71ae5a4SJacob Faibussowitsch { 17201302d50aSBarry Smith PetscInt i; 1721afebec48SHong Zhang PetscBool flg; 1722a5e6ed63SBarry Smith 17236849ba73SBarry Smith PetscFunctionBegin; 17249566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1725a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17269566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 172748a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17284dcd73b1SHong Zhang } 17293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1730a5e6ed63SBarry Smith } 1731a5e6ed63SBarry Smith 173266976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1733d71ae5a4SJacob Faibussowitsch { 17347d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17356f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17367d68702bSBarry Smith 17377d68702bSBarry Smith PetscFunctionBegin; 17386f33a894SBarry Smith if (!Y->preallocated) { 17399566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17406f33a894SBarry Smith } else if (!aij->nz) { 1741b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17429566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1743b83222d8SBarry Smith aij->nonew = nonew; 17447d68702bSBarry Smith } 17459566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17477d68702bSBarry Smith } 17487d68702bSBarry Smith 174966976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1750d71ae5a4SJacob Faibussowitsch { 17513b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17523b49f96aSBarry Smith 17533b49f96aSBarry Smith PetscFunctionBegin; 17545f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17559566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17563b49f96aSBarry Smith if (d) { 17573b49f96aSBarry Smith PetscInt rstart; 17589566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17593b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17603b49f96aSBarry Smith } 17613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17623b49f96aSBarry Smith } 17633b49f96aSBarry Smith 176466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1765d71ae5a4SJacob Faibussowitsch { 1766a5b7ff6bSBarry Smith PetscFunctionBegin; 1767a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1769a5b7ff6bSBarry Smith } 17703b49f96aSBarry Smith 177117ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 177217ea310bSPierre Jolivet { 177317ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 177417ea310bSPierre Jolivet 177517ea310bSPierre Jolivet PetscFunctionBegin; 177617ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 177717ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 177817ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 177917ea310bSPierre Jolivet } 178017ea310bSPierre Jolivet 17816cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1782789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1783789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 17846cff0a6bSPierre Jolivet 17853964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1786a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1787a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1788a9d4b620SHong Zhang MatMult_MPISBAIJ, 178997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1790431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1791431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794f4259b30SLisandro Dalcin NULL, 1795f4259b30SLisandro Dalcin /* 10*/ NULL, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 179841f059aeSBarry Smith MatSOR_MPISBAIJ, 1799a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 180097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1801a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1802a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1803a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1804a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 180597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1806a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1807a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1808a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1809f4259b30SLisandro Dalcin /* 24*/ NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 181426cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1818f4259b30SLisandro Dalcin NULL, 1819d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18257dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1826d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1827a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18283c896bc6SHong Zhang MatCopy_MPISBAIJ, 1829f4259b30SLisandro Dalcin /* 44*/ NULL, 1830a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18317d68702bSBarry Smith MatShift_MPISBAIJ, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin /* 49*/ NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin /* 54*/ NULL, 1840f4259b30SLisandro Dalcin NULL, 1841a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1842f4259b30SLisandro Dalcin NULL, 1843a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18447dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin /* 64*/ NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853*8bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPISBAIJ, 1854*8bb0f5c6SPierre Jolivet /* 69*/ NULL, 185528d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 18635bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1864*8bb0f5c6SPierre Jolivet /* 79*/ NULL, 1865*8bb0f5c6SPierre Jolivet NULL, 1866*8bb0f5c6SPierre Jolivet NULL, 1867*8bb0f5c6SPierre Jolivet NULL, 1868*8bb0f5c6SPierre Jolivet NULL, 1869f4259b30SLisandro Dalcin /* 84*/ NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin /* 89*/ NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878*8bb0f5c6SPierre Jolivet MatConjugate_MPISBAIJ, 1879f4259b30SLisandro Dalcin /* 94*/ NULL, 1880f4259b30SLisandro Dalcin NULL, 188199cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1882d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1883d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1884*8bb0f5c6SPierre Jolivet /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ, 1885*8bb0f5c6SPierre Jolivet NULL, 1886*8bb0f5c6SPierre Jolivet NULL, 1887*8bb0f5c6SPierre Jolivet NULL, 1888*8bb0f5c6SPierre Jolivet NULL, 1889*8bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPISBAIJ, 1890*8bb0f5c6SPierre Jolivet NULL, 1891*8bb0f5c6SPierre Jolivet NULL, 1892*8bb0f5c6SPierre Jolivet NULL, 1893*8bb0f5c6SPierre Jolivet NULL, 1894f4259b30SLisandro Dalcin /*109*/ NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898*8bb0f5c6SPierre Jolivet NULL, 1899f4259b30SLisandro Dalcin /*114*/ NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin NULL, 1904f4259b30SLisandro Dalcin /*119*/ NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin NULL, 1909f4259b30SLisandro Dalcin /*124*/ NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 1912*8bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 1913f4259b30SLisandro Dalcin NULL, 1914f4259b30SLisandro Dalcin /*129*/ NULL, 1915f4259b30SLisandro Dalcin NULL, 1916*8bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1917f4259b30SLisandro Dalcin NULL, 1918f4259b30SLisandro Dalcin NULL, 1919f4259b30SLisandro Dalcin /*134*/ NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 1922eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 19234cc2b5b5SPierre Jolivet NULL, 1924*8bb0f5c6SPierre Jolivet /*139*/ NULL, 192542ce410bSJunchao Zhang NULL, 192642ce410bSJunchao Zhang NULL, 1927fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 1928a30f8f8cSSatish Balay 192966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1930d71ae5a4SJacob Faibussowitsch { 1931476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1932535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19335d2a9ed1SStefano Zampini PetscMPIInt size; 1934a23d5eceSKris Buschelman 1935a23d5eceSKris Buschelman PetscFunctionBegin; 1936ad79cf63SBarry Smith if (B->hash_active) { 1937aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1938ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1939ad79cf63SBarry Smith } 1940ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 194158b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 19429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19455f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19465f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1947899cda47SBarry Smith 1948d0f46423SBarry Smith mbs = B->rmap->n / bs; 1949d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19505f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1951a23d5eceSKris Buschelman 1952d0f46423SBarry Smith B->rmap->bs = bs; 1953a23d5eceSKris Buschelman b->bs2 = bs * bs; 1954a23d5eceSKris Buschelman b->mbs = mbs; 1955a23d5eceSKris Buschelman b->Mbs = Mbs; 1956de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1957de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1958a23d5eceSKris Buschelman 1959ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1960d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1961d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1962a23d5eceSKris Buschelman 1963d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1964d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1965a23d5eceSKris Buschelman 1966cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1967eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1968cb7b82ddSBarry Smith #else 19699566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1970cb7b82ddSBarry Smith #endif 19719566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 19739566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 19749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 19759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 19769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 19779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 19789566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 19799566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 1980cb7b82ddSBarry Smith 19819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 1982c508b908SBarry Smith 1983c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 19849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 19859566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 19869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 19879566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 1988c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 1989cb7b82ddSBarry Smith 1990c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 1991ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 19929566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 19939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 19949566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 1995c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 1996a23d5eceSKris Buschelman 19979566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 19989566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 199926fbe8dcSKarl Rupp 2000526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2001cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2002cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2004a23d5eceSKris Buschelman } 2005a23d5eceSKris Buschelman 200666976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2007d71ae5a4SJacob Faibussowitsch { 200802106b30SBarry Smith PetscInt m, rstart, cend; 2009f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2010f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2011f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2012bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20133bd0feecSPierre Jolivet PetscBool nooffprocentries; 2014dfb205c3SBarry Smith 2015dfb205c3SBarry Smith PetscFunctionBegin; 20165f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20219566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2022dfb205c3SBarry Smith m = B->rmap->n / bs; 2023dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2024dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2025dfb205c3SBarry Smith 20265f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2028dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2029dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20305f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20314cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2032dfb205c3SBarry Smith JJ = jj + ii[i]; 20330cd7f59aSBarry Smith bd = 0; 2034dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20350cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2036dfb205c3SBarry Smith JJ++; 20370cd7f59aSBarry Smith bd++; 2038dfb205c3SBarry Smith } 2039dfb205c3SBarry Smith d = 0; 2040dfb205c3SBarry Smith for (; j < nz; j++) { 2041dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2042dfb205c3SBarry Smith d++; 2043dfb205c3SBarry Smith } 2044dfb205c3SBarry Smith d_nnz[i] = d; 20450cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20460cd7f59aSBarry Smith nz = nz - bd; 20470cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2048dfb205c3SBarry Smith } 20499566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20509566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20519566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2052dfb205c3SBarry Smith 2053dfb205c3SBarry Smith values = (PetscScalar *)V; 205448a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2055dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2056dfb205c3SBarry Smith PetscInt row = i + rstart; 2057dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2058dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2059bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2060dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20619566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2062bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2063bb80cfbbSStefano Zampini PetscInt j; 20640cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20650cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20669566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20670cd7f59aSBarry Smith } 20680cd7f59aSBarry Smith } 2069dfb205c3SBarry Smith } 2070dfb205c3SBarry Smith 20719566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20723bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20733bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 20749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 20759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 20763bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20773bd0feecSPierre Jolivet 20789566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 20793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2080dfb205c3SBarry Smith } 2081dfb205c3SBarry Smith 20820bad9183SKris Buschelman /*MC 2083fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2084828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2085828413b8SBarry Smith the matrix is stored. 2086828413b8SBarry Smith 2087828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 208811a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 20890bad9183SKris Buschelman 20902ef1f0ffSBarry Smith Options Database Key: 209111a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 20920bad9183SKris Buschelman 20932ef1f0ffSBarry Smith Level: beginner 20942ef1f0ffSBarry Smith 209511a5261eSBarry Smith Note: 2096476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2097476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2098476417e5SBarry Smith 20991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 21000bad9183SKris Buschelman M*/ 21010bad9183SKris Buschelman 2102d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2103d71ae5a4SJacob Faibussowitsch { 2104b5df2d14SHong Zhang Mat_MPISBAIJ *b; 210594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2106b5df2d14SHong Zhang 2107b5df2d14SHong Zhang PetscFunctionBegin; 21084dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2109b0a32e0cSBarry Smith B->data = (void *)b; 2110aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2111b5df2d14SHong Zhang 2112b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2113b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2114b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2115b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 211626fbe8dcSKarl Rupp 21179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2119b5df2d14SHong Zhang 2120b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2122b5df2d14SHong Zhang 2123b5df2d14SHong Zhang /* build cache for off array entries formed */ 21249566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 212526fbe8dcSKarl Rupp 2126b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21270298fd71SBarry Smith b->colmap = NULL; 21280298fd71SBarry Smith b->garray = NULL; 2129b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2130b5df2d14SHong Zhang 2131b5df2d14SHong Zhang /* stuff used in block assembly */ 2132f4259b30SLisandro Dalcin b->barray = NULL; 2133b5df2d14SHong Zhang 2134b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2135f4259b30SLisandro Dalcin b->lvec = NULL; 2136f4259b30SLisandro Dalcin b->Mvctx = NULL; 2137f4259b30SLisandro Dalcin b->slvec0 = NULL; 2138f4259b30SLisandro Dalcin b->slvec0b = NULL; 2139f4259b30SLisandro Dalcin b->slvec1 = NULL; 2140f4259b30SLisandro Dalcin b->slvec1a = NULL; 2141f4259b30SLisandro Dalcin b->slvec1b = NULL; 2142f4259b30SLisandro Dalcin b->sMvctx = NULL; 2143b5df2d14SHong Zhang 2144b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2145f4259b30SLisandro Dalcin b->rowindices = NULL; 2146f4259b30SLisandro Dalcin b->rowvalues = NULL; 2147b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2148b5df2d14SHong Zhang 2149b5df2d14SHong Zhang /* hash table stuff */ 2150f4259b30SLisandro Dalcin b->ht = NULL; 2151f4259b30SLisandro Dalcin b->hd = NULL; 2152b5df2d14SHong Zhang b->ht_size = 0; 2153b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2154b5df2d14SHong Zhang b->ht_fact = 0; 2155b5df2d14SHong Zhang b->ht_total_ct = 0; 2156b5df2d14SHong Zhang b->ht_insert_ct = 0; 2157b5df2d14SHong Zhang 21587dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21597a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21607a868f3eSHong Zhang 2161f4259b30SLisandro Dalcin b->in_loc = NULL; 2162f4259b30SLisandro Dalcin b->v_loc = NULL; 216359ffdab8SBarry Smith b->n_loc = 0; 216494ae4db5SBarry Smith 21659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21696214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 21716214f412SHong Zhang #endif 2172d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 21739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2174d24d4204SJose E. Roman #endif 21759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 21769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2177aa5a9175SDahai Guo 2178b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2179b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2180b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2181b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2182eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2183b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2184eb1ec7c1SStefano Zampini #else 2185b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2186eb1ec7c1SStefano Zampini #endif 218713647f61SHong Zhang 21889566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2189d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 21909566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 219194ae4db5SBarry Smith if (flg) { 219294ae4db5SBarry Smith PetscReal fact = 1.39; 21939566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 21949566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 219594ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 21969566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 21979566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 219894ae4db5SBarry Smith } 2199d0609cedSBarry Smith PetscOptionsEnd(); 22003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2201b5df2d14SHong Zhang } 2202b5df2d14SHong Zhang 22032920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2204209238afSKris Buschelman /*MC 2205002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2206209238afSKris Buschelman 220711a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 220811a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2209209238afSKris Buschelman 221011a5261eSBarry Smith Options Database Key: 2211c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2212209238afSKris Buschelman 2213209238afSKris Buschelman Level: beginner 2214209238afSKris Buschelman 22151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2216209238afSKris Buschelman M*/ 2217209238afSKris Buschelman 22185d83a8b1SBarry Smith /*@ 2219b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2220b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2221b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2222b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2223b5df2d14SHong Zhang 2224c3339decSBarry Smith Collective 2225b5df2d14SHong Zhang 2226b5df2d14SHong Zhang Input Parameters: 22271c4f3114SJed Brown + B - the matrix 2228bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2229bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2230b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2231b5df2d14SHong Zhang submatrix (same for all local rows) 2232b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22336d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22342ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 223595742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2236b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2237b5df2d14SHong Zhang submatrix (same for all local rows). 2238b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2239c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22402ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2241b5df2d14SHong Zhang 2242b5df2d14SHong Zhang Options Database Keys: 2243a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2244b5df2d14SHong Zhang block calculations (much slower) 2245a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2246b5df2d14SHong Zhang 22472ef1f0ffSBarry Smith Level: intermediate 22482ef1f0ffSBarry Smith 2249b5df2d14SHong Zhang Notes: 2250b5df2d14SHong Zhang 225111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2252b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2253b5df2d14SHong Zhang 225449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 225549a6f317SBarry Smith 2256b5df2d14SHong Zhang Storage Information: 2257b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2258b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2259b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2260b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2261b5df2d14SHong Zhang 2262b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22632ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22642ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2265b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22662ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2267b5df2d14SHong Zhang 226811a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2269aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22702ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2271aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2272aa95bbe8SBarry Smith 2273b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2274b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2275b5df2d14SHong Zhang 2276b5df2d14SHong Zhang .vb 2277b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2278a4b1a0f6SJed Brown -------------------------- 2279c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2280c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2281c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2282a4b1a0f6SJed Brown -------------------------- 2283b5df2d14SHong Zhang .ve 2284b5df2d14SHong Zhang 2285b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2286b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22876d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 228811a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2289b5df2d14SHong Zhang 22902ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 22916d10fdaeSSatish Balay plus the diagonal part of the d matrix, 22922ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2293c2fc9fa9SBarry Smith 2294b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 22952ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2296b5df2d14SHong Zhang 22971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2298b5df2d14SHong Zhang @*/ 2299d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2300d71ae5a4SJacob Faibussowitsch { 2301b5df2d14SHong Zhang PetscFunctionBegin; 23026ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23036ba663aaSJed Brown PetscValidType(B, 1); 23046ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2305cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2307b5df2d14SHong Zhang } 2308b5df2d14SHong Zhang 23092920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 23105d83a8b1SBarry Smith /*@ 231111a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2312a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2313a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 231420f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2315a30f8f8cSSatish Balay 2316d083f849SBarry Smith Collective 2317a30f8f8cSSatish Balay 2318a30f8f8cSSatish Balay Input Parameters: 2319a30f8f8cSSatish Balay + comm - MPI communicator 232011a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 232120f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 232220f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2323a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2324a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 232520f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2326a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2327a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 232820f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 232920f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2330a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2331a30f8f8cSSatish Balay submatrix (same for all local rows) 2332a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23336d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23342ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 233595742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 233695742e49SBarry Smith set its value even if it is zero. 2337a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2338a30f8f8cSSatish Balay submatrix (same for all local rows). 2339a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2340a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23412ef1f0ffSBarry Smith each block row) or `NULL`. 2342a30f8f8cSSatish Balay 2343a30f8f8cSSatish Balay Output Parameter: 2344a30f8f8cSSatish Balay . A - the matrix 2345a30f8f8cSSatish Balay 2346a30f8f8cSSatish Balay Options Database Keys: 2347a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2348a30f8f8cSSatish Balay block calculations (much slower) 2349a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2350a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2351a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2352a30f8f8cSSatish Balay 23532ef1f0ffSBarry Smith Level: intermediate 23542ef1f0ffSBarry Smith 23552ef1f0ffSBarry Smith Notes: 235677433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2357f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 235811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2359175b88e8SBarry Smith 2360d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23616d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2362d1be2dadSMatthew Knepley 2363a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2364a30f8f8cSSatish Balay (possibly both). 2365a30f8f8cSSatish Balay 236611a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2367a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2368a30f8f8cSSatish Balay 2369727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by 2370727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 2371727bdf9bSBarry Smith 237249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 237349a6f317SBarry Smith 2374a30f8f8cSSatish Balay Storage Information: 2375a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2376a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2377a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2378a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2379a30f8f8cSSatish Balay 2380a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 23812ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 23822ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2383a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 23842ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2385a30f8f8cSSatish Balay 2386a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2387a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2388a30f8f8cSSatish Balay 2389a30f8f8cSSatish Balay .vb 2390a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2391a4b1a0f6SJed Brown -------------------------- 2392c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2393c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2394c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2395a4b1a0f6SJed Brown -------------------------- 2396a30f8f8cSSatish Balay .ve 2397a30f8f8cSSatish Balay 2398a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2399a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24006d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24012ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2402a30f8f8cSSatish Balay 24032ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24046d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24052ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2406a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24072ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2408a30f8f8cSSatish Balay 2409727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, 2410727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 2411a30f8f8cSSatish Balay @*/ 2412d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2413d71ae5a4SJacob Faibussowitsch { 24141302d50aSBarry Smith PetscMPIInt size; 2415a30f8f8cSSatish Balay 2416a30f8f8cSSatish Balay PetscFunctionBegin; 24179566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2420273d9f13SBarry Smith if (size > 1) { 24219566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24229566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2423273d9f13SBarry Smith } else { 24249566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24259566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2426273d9f13SBarry Smith } 24273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2428a30f8f8cSSatish Balay } 2429a30f8f8cSSatish Balay 2430d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2431d71ae5a4SJacob Faibussowitsch { 2432a30f8f8cSSatish Balay Mat mat; 2433a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2434d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2435387bc808SHong Zhang PetscScalar *array; 2436a30f8f8cSSatish Balay 2437a30f8f8cSSatish Balay PetscFunctionBegin; 2438f4259b30SLisandro Dalcin *newmat = NULL; 243926fbe8dcSKarl Rupp 24409566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24429566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24439566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24449566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2445e1b6402fSHong Zhang 2446420957c1SBarry Smith if (matin->hash_active) { 2447420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2448420957c1SBarry Smith } else { 2449d5f3da31SBarry Smith mat->factortype = matin->factortype; 2450273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 245182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24527fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24537fff6886SHong Zhang 2454b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2455a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2456a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2457a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2458a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2459a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2460a30f8f8cSSatish Balay 2461a30f8f8cSSatish Balay a->size = oldmat->size; 2462a30f8f8cSSatish Balay a->rank = oldmat->rank; 2463a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2464a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2465f4259b30SLisandro Dalcin a->rowindices = NULL; 2466f4259b30SLisandro Dalcin a->rowvalues = NULL; 2467a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2468f4259b30SLisandro Dalcin a->barray = NULL; 2469899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2470899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2471899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2472899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2473a30f8f8cSSatish Balay 2474a30f8f8cSSatish Balay /* hash table stuff */ 2475f4259b30SLisandro Dalcin a->ht = NULL; 2476f4259b30SLisandro Dalcin a->hd = NULL; 2477a30f8f8cSSatish Balay a->ht_size = 0; 2478a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2479a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2480a30f8f8cSSatish Balay a->ht_total_ct = 0; 2481a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2482a30f8f8cSSatish Balay 24839566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2484a30f8f8cSSatish Balay if (oldmat->colmap) { 2485a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2486eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2487a30f8f8cSSatish Balay #else 24889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 24899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2490a30f8f8cSSatish Balay #endif 2491f4259b30SLisandro Dalcin } else a->colmap = NULL; 2492387bc808SHong Zhang 2493f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 24949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 24959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2496f4259b30SLisandro Dalcin } else a->garray = NULL; 2497a30f8f8cSSatish Balay 24989566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 24999566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 25009566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 250182327fa8SHong Zhang 25029566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25039566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2504387bc808SHong Zhang 25059566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25069566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25079566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25089566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25109566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25119566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25129566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2513387bc808SHong Zhang 2514387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25159566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2516387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 251782327fa8SHong Zhang 25189566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25199566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2520420957c1SBarry Smith } 25219566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2522a30f8f8cSSatish Balay *newmat = mat; 25233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2524a30f8f8cSSatish Balay } 2525a30f8f8cSSatish Balay 2526618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2527618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2528618cc2edSLisandro Dalcin 25296cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2530d71ae5a4SJacob Faibussowitsch { 25317f489da9SVaclav Hapla PetscBool isbinary; 253295936485SShri Abhyankar 253395936485SShri Abhyankar PetscFunctionBegin; 25349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25355f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25369566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 253895936485SShri Abhyankar } 253995936485SShri Abhyankar 2540789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2541d71ae5a4SJacob Faibussowitsch { 254224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2543f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2544ca54ac64SHong Zhang PetscReal atmp; 254587828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25461302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25471302d50aSBarry Smith PetscMPIInt rank, size; 25486497c311SBarry Smith PetscInt *rowners_bs, count, source; 254987828ca2SBarry Smith PetscScalar *va; 25508a1c53f2SBarry Smith MatScalar *ba; 2551f4c0e9e4SHong Zhang MPI_Status stat; 255224d5174aSHong Zhang 255324d5174aSHong Zhang PetscFunctionBegin; 25545f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25559566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25569566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2557f4c0e9e4SHong Zhang 25589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2560f4c0e9e4SHong Zhang 2561d0f46423SBarry Smith bs = A->rmap->bs; 2562f4c0e9e4SHong Zhang mbs = a->mbs; 2563f4c0e9e4SHong Zhang Mbs = a->Mbs; 2564f4c0e9e4SHong Zhang ba = b->a; 2565f4c0e9e4SHong Zhang bi = b->i; 2566f4c0e9e4SHong Zhang bj = b->j; 2567f4c0e9e4SHong Zhang 2568f4c0e9e4SHong Zhang /* find ownerships */ 2569d0f46423SBarry Smith rowners_bs = A->rmap->range; 2570f4c0e9e4SHong Zhang 2571f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25729566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2573f4c0e9e4SHong Zhang 2574f4c0e9e4SHong Zhang /* row_max for B */ 2575b8475685SHong Zhang if (rank != size - 1) { 2576f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25779371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25789371c9d4SSatish Balay bi++; 2579f4c0e9e4SHong Zhang brow = bs * i; 2580f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2581f4c0e9e4SHong Zhang bcol = bs * (*bj); 2582f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2583ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 258404d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2585f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 25869371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 25879371c9d4SSatish Balay ba++; 2588ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2589ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2590f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2591f4c0e9e4SHong Zhang } 2592f4c0e9e4SHong Zhang } 2593f4c0e9e4SHong Zhang bj++; 2594f4c0e9e4SHong Zhang } 2595f4c0e9e4SHong Zhang } 2596f4c0e9e4SHong Zhang 2597f4c0e9e4SHong Zhang /* send values to its owners */ 25986497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) { 2599f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2600ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26016497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2602ca54ac64SHong Zhang } 2603f4c0e9e4SHong Zhang } 2604f4c0e9e4SHong Zhang 2605f4c0e9e4SHong Zhang /* receive values */ 2606ca54ac64SHong Zhang if (rank) { 2607f4c0e9e4SHong Zhang rvalues = work; 2608ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2609f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26106497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2611f4c0e9e4SHong Zhang /* process values */ 2612f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2613ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2614f4c0e9e4SHong Zhang } 2615f4c0e9e4SHong Zhang } 2616ca54ac64SHong Zhang } 2617f4c0e9e4SHong Zhang 26189566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26199566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 262124d5174aSHong Zhang } 26222798e883SHong Zhang 2623789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2624d71ae5a4SJacob Faibussowitsch { 26252798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2626d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26273649974fSBarry Smith PetscScalar *x, *ptr, *from; 2628ffe4fb16SHong Zhang Vec bb1; 26293649974fSBarry Smith const PetscScalar *b; 2630ffe4fb16SHong Zhang 2631ffe4fb16SHong Zhang PetscFunctionBegin; 26325f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26335f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2634ffe4fb16SHong Zhang 2635a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26369566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638a2b30743SBarry Smith } 2639a2b30743SBarry Smith 2640ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2641ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2643ffe4fb16SHong Zhang its--; 2644ffe4fb16SHong Zhang } 2645ffe4fb16SHong Zhang 26469566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2647ffe4fb16SHong Zhang while (its--) { 2648ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26499566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2650ffe4fb16SHong Zhang 2651ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26529566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26539566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26549566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2656ffe4fb16SHong Zhang 26579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2658ffe4fb16SHong Zhang 2659ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26609566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26619566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26629566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2664ffe4fb16SHong Zhang 2665ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2666629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2667629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2668ffe4fb16SHong Zhang 26699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26709566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26729566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2673ffe4fb16SHong Zhang 2674ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26759566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2676ffe4fb16SHong Zhang 2677ffe4fb16SHong Zhang /* local diagonal sweep */ 26789566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2679ffe4fb16SHong Zhang } 26809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2681fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26829566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2683fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 26849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2685fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2686fa22f6d0SBarry Smith Vec xx1; 2687ace3abfcSBarry Smith PetscBool hasop; 268820f1ed55SBarry Smith const PetscScalar *diag; 2689887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 269020f1ed55SBarry Smith PetscInt i, n; 2691fa22f6d0SBarry Smith 2692fa22f6d0SBarry Smith if (!mat->xx1) { 26939566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 26949566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2695fa22f6d0SBarry Smith } 2696fa22f6d0SBarry Smith xx1 = mat->xx1; 2697fa22f6d0SBarry Smith bb1 = mat->bb1; 2698fa22f6d0SBarry Smith 26999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2700fa22f6d0SBarry Smith 2701fa22f6d0SBarry Smith if (!mat->diag) { 2702effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27039566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27049566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2705fa22f6d0SBarry Smith } 27069566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2707fa22f6d0SBarry Smith 2708fa22f6d0SBarry Smith if (hasop) { 27099566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27109566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 271120f1ed55SBarry Smith } else { 271220f1ed55SBarry Smith /* 271320f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27149566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27159566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 271620f1ed55SBarry Smith */ 27179566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27209566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27219566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2722887ee2caSBarry Smith if (omega == 1.0) { 272326fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27249566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2725887ee2caSBarry Smith } else { 272626fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27279566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2728887ee2caSBarry Smith } 27299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 273320f1ed55SBarry Smith } 2734fa22f6d0SBarry Smith 2735fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2736629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2737629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27389566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27399566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27409566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27469566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2747fa22f6d0SBarry Smith 2748fa22f6d0SBarry Smith /* local sweep */ 27499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27509566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2751f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2753ffe4fb16SHong Zhang } 2754ffe4fb16SHong Zhang 2755dfb205c3SBarry Smith /*@ 2756d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2757dfb205c3SBarry Smith 2758d083f849SBarry Smith Collective 2759dfb205c3SBarry Smith 2760dfb205c3SBarry Smith Input Parameters: 2761dfb205c3SBarry Smith + comm - MPI communicator 2762dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 276311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2764dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2765d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27662ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27672ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27682ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2769483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2770dfb205c3SBarry Smith . j - column indices 2771dfb205c3SBarry Smith - a - matrix values 2772dfb205c3SBarry Smith 2773dfb205c3SBarry Smith Output Parameter: 2774dfb205c3SBarry Smith . mat - the matrix 2775dfb205c3SBarry Smith 2776dfb205c3SBarry Smith Level: intermediate 2777dfb205c3SBarry Smith 2778dfb205c3SBarry Smith Notes: 27792ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 27802ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 27812ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2782dfb205c3SBarry Smith 27832ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2784dfb205c3SBarry Smith 27851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2786d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2787dfb205c3SBarry Smith @*/ 2788d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2789d71ae5a4SJacob Faibussowitsch { 2790dfb205c3SBarry Smith PetscFunctionBegin; 27915f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 27925f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 27939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 27949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 27959566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 27969566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 27973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2798dfb205c3SBarry Smith } 2799dfb205c3SBarry Smith 28005d83a8b1SBarry Smith /*@ 280111a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2802dfb205c3SBarry Smith 2803d083f849SBarry Smith Collective 2804dfb205c3SBarry Smith 2805dfb205c3SBarry Smith Input Parameters: 28061c4f3114SJed Brown + B - the matrix 2807dfb205c3SBarry Smith . bs - the block size 2808d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2809d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2810d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2811dfb205c3SBarry Smith 2812664954b6SBarry Smith Level: advanced 2813664954b6SBarry Smith 2814664954b6SBarry Smith Notes: 2815d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2816d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2817d8a51d2aSBarry Smith called this routine. 2818d8a51d2aSBarry Smith 28190cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28200cd7f59aSBarry Smith and usually the numerical values as well 28210cd7f59aSBarry Smith 2822d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2823dfb205c3SBarry Smith 2824d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2825d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2826dfb205c3SBarry Smith @*/ 2827d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2828d71ae5a4SJacob Faibussowitsch { 2829dfb205c3SBarry Smith PetscFunctionBegin; 2830cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2832dfb205c3SBarry Smith } 2833dfb205c3SBarry Smith 2834d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2835d71ae5a4SJacob Faibussowitsch { 283610c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 283710c56fdeSHong Zhang PetscInt *indx; 283810c56fdeSHong Zhang PetscScalar *values; 2839dfb205c3SBarry Smith 28404dcd73b1SHong Zhang PetscFunctionBegin; 28419566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 284210c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 284310c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2844de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 284510c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2846de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28474dcd73b1SHong Zhang 28489566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28499371c9d4SSatish Balay mbs = m / bs; 28509371c9d4SSatish Balay Nbs = N / cbs; 285148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2852da91a574SPierre Jolivet nbs = n / cbs; 28534dcd73b1SHong Zhang 28549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2855d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2856de25e9cbSPierre Jolivet 28579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2859de25e9cbSPierre Jolivet if (rank == size - 1) { 2860de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28615f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2862de25e9cbSPierre Jolivet } 2863de25e9cbSPierre Jolivet 2864d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28659566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 286610c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28679566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28684dcd73b1SHong Zhang nnz = nnz / bs; 28694dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28709566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28719566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28724dcd73b1SHong Zhang } 28739566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28749566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28754dcd73b1SHong Zhang 28769566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28789566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28799566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28809566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28819566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2882d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 28834dcd73b1SHong Zhang } 28844dcd73b1SHong Zhang 288510c56fdeSHong Zhang /* numeric phase */ 28869566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 28884dcd73b1SHong Zhang 28899566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 28904dcd73b1SHong Zhang for (i = 0; i < m; i++) { 28919566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28924dcd73b1SHong Zhang Ii = i + rstart; 28939566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 28949566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 28954dcd73b1SHong Zhang } 28969566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28979566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 28989566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 28993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29004dcd73b1SHong Zhang } 2901