xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 8c07d4e34e2694b8a81445e6bdca0dcfa92501ea)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102e6b907acSBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew); \
103a30f8f8cSSatish Balay       N = nrow++ - 1;  \
104a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
105a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
106a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
107a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
110a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
111a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
112a30f8f8cSSatish Balay       a_noinsert:; \
113a30f8f8cSSatish Balay     ailen[brow] = nrow; \
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
116a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
117a30f8f8cSSatish Balay { \
118a30f8f8cSSatish Balay     brow = row/bs;  \
119a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
120a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
121a30f8f8cSSatish Balay       bcol = col/bs; \
122a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
123a30f8f8cSSatish Balay       low = 0; high = nrow; \
124a30f8f8cSSatish Balay       while (high-low > 3) { \
125a30f8f8cSSatish Balay         t = (low+high)/2; \
126a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
127a30f8f8cSSatish Balay         else              low  = t; \
128a30f8f8cSSatish Balay       } \
129a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
130a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
131a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
132a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
133a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
134a30f8f8cSSatish Balay           else                    *bap  = value;  \
135a30f8f8cSSatish Balay           goto b_noinsert; \
136a30f8f8cSSatish Balay         } \
137a30f8f8cSSatish Balay       } \
138a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
139085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
140e6b907acSBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew); \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       b_noinsert:; \
151a30f8f8cSSatish Balay     bilen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #endif
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1564a2ae208SSatish Balay #undef __FUNCT__
1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
159a30f8f8cSSatish Balay {
160a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
161dfbe8321SBarry Smith   PetscErrorCode ierr;
1621302d50aSBarry Smith   PetscInt       i,N = m*n;
163a30f8f8cSSatish Balay   MatScalar      *vsingle;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   PetscFunctionBegin;
166a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
169a30f8f8cSSatish Balay     b->setvalueslen  = N;
170a30f8f8cSSatish Balay   }
171a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
172a30f8f8cSSatish Balay 
173a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
174a30f8f8cSSatish Balay     vsingle[i] = v[i];
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
177a30f8f8cSSatish Balay   PetscFunctionReturn(0);
178a30f8f8cSSatish Balay }
179a30f8f8cSSatish Balay 
1804a2ae208SSatish Balay #undef __FUNCT__
1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
183a30f8f8cSSatish Balay {
184a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
1861302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
187a30f8f8cSSatish Balay   MatScalar      *vsingle;
188a30f8f8cSSatish Balay 
189a30f8f8cSSatish Balay   PetscFunctionBegin;
190a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19105b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
193a30f8f8cSSatish Balay     b->setvalueslen  = N;
194a30f8f8cSSatish Balay   }
195a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
196a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
197a30f8f8cSSatish Balay     vsingle[i] = v[i];
198a30f8f8cSSatish Balay   }
199a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
201a30f8f8cSSatish Balay }
202a30f8f8cSSatish Balay #endif
203a30f8f8cSSatish Balay 
204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
205a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
206a30f8f8cSSatish Balay */
2074a2ae208SSatish Balay #undef __FUNCT__
208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
210a30f8f8cSSatish Balay {
211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
212a30f8f8cSSatish Balay   MatScalar      value;
213b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
2151302d50aSBarry Smith   PetscInt       i,j,row,col;
216899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
217899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
218899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay   /* Some Variables required in the macro */
221a30f8f8cSSatish Balay   Mat            A = baij->A;
222a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2231302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
224a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
225a30f8f8cSSatish Balay 
226a30f8f8cSSatish Balay   Mat            B = baij->B;
227a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2281302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
229a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
230a30f8f8cSSatish Balay 
2311302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2321302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
233a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
234a30f8f8cSSatish Balay 
235a30f8f8cSSatish Balay   /* for stash */
236910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
237910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
238a30f8f8cSSatish Balay 
239a30f8f8cSSatish Balay   PetscFunctionBegin;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   if (!baij->donotstash){
24259ffdab8SBarry Smith     if (n > baij->n_loc) {
24359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
24559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
24759ffdab8SBarry Smith       baij->n_loc = n;
24859ffdab8SBarry Smith     }
24959ffdab8SBarry Smith     in_loc = baij->in_loc;
25059ffdab8SBarry Smith     v_loc  = baij->v_loc;
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
254a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
256899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
257a30f8f8cSSatish Balay #endif
258a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
259a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
260a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26201b2bd88SHong Zhang           if (a->ignore_ltriangular){
26301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26401b2bd88SHong Zhang           } else {
26501b2bd88SHong Zhang             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
26601b2bd88SHong Zhang           }
26701b2bd88SHong Zhang         }
268a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
269a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
270a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
271a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
272a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
273a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
274a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
275a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
277899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
280a30f8f8cSSatish Balay           if (mat->was_assembled) {
281a30f8f8cSSatish Balay             if (!baij->colmap) {
282653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
283a30f8f8cSSatish Balay             }
284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
285a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28671730473SSatish Balay             col  = col - 1;
287a30f8f8cSSatish Balay #else
28871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
289a30f8f8cSSatish Balay #endif
290a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
291a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
292a30f8f8cSSatish Balay               col =  in[j];
293a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
294a30f8f8cSSatish Balay               B = baij->B;
295a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
296a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
297a30f8f8cSSatish Balay               ba=b->a;
29871730473SSatish Balay             } else col += in[j]%bs;
299a30f8f8cSSatish Balay           } else col = in[j];
300a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
301a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
302a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
303a30f8f8cSSatish Balay         }
304a30f8f8cSSatish Balay       }
305a30f8f8cSSatish Balay     } else {  /* off processor entry */
306a30f8f8cSSatish Balay       if (!baij->donotstash) {
307a30f8f8cSSatish Balay         n_loc = 0;
308a30f8f8cSSatish Balay         for (j=0; j<n; j++){
309f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
310a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
311a30f8f8cSSatish Balay           if (roworiented) {
312a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
313a30f8f8cSSatish Balay           } else {
314a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
315a30f8f8cSSatish Balay           }
316a30f8f8cSSatish Balay           n_loc++;
317a30f8f8cSSatish Balay         }
318a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
319a30f8f8cSSatish Balay       }
320a30f8f8cSSatish Balay     }
321a30f8f8cSSatish Balay   }
322a30f8f8cSSatish Balay   PetscFunctionReturn(0);
323a30f8f8cSSatish Balay }
324a30f8f8cSSatish Balay 
3254a2ae208SSatish Balay #undef __FUNCT__
326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
328a30f8f8cSSatish Balay {
3290880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
330f15d580aSBarry Smith   const MatScalar *value;
331f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3320880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
333dfbe8321SBarry Smith   PetscErrorCode  ierr;
334899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
335899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
336899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3370880e062SHong Zhang 
338a30f8f8cSSatish Balay   PetscFunctionBegin;
3390880e062SHong Zhang   if(!barray) {
3400880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3410880e062SHong Zhang     baij->barray = barray;
3420880e062SHong Zhang   }
3430880e062SHong Zhang 
3440880e062SHong Zhang   if (roworiented) {
3450880e062SHong Zhang     stepval = (n-1)*bs;
3460880e062SHong Zhang   } else {
3470880e062SHong Zhang     stepval = (m-1)*bs;
3480880e062SHong Zhang   }
3490880e062SHong Zhang   for (i=0; i<m; i++) {
3500880e062SHong Zhang     if (im[i] < 0) continue;
3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3530880e062SHong Zhang #endif
3540880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3550880e062SHong Zhang       row = im[i] - rstart;
3560880e062SHong Zhang       for (j=0; j<n; j++) {
3570880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3580880e062SHong Zhang         if ((roworiented) && (n == 1)) {
359f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3600880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
361f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3620880e062SHong Zhang         } else { /* Here a copy is required */
3630880e062SHong Zhang           if (roworiented) {
3640880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3650880e062SHong Zhang           } else {
3660880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3670880e062SHong Zhang           }
3680880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3690880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3700880e062SHong Zhang               *barray++  = *value++;
3710880e062SHong Zhang             }
3720880e062SHong Zhang           }
3730880e062SHong Zhang           barray -=bs2;
3740880e062SHong Zhang         }
3750880e062SHong Zhang 
3760880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3770880e062SHong Zhang           col  = in[j] - cstart;
3780880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3790880e062SHong Zhang         }
3800880e062SHong Zhang         else if (in[j] < 0) continue;
3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3830880e062SHong Zhang #endif
3840880e062SHong Zhang         else {
3850880e062SHong Zhang           if (mat->was_assembled) {
3860880e062SHong Zhang             if (!baij->colmap) {
387653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3880880e062SHong Zhang             }
3890880e062SHong Zhang 
3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3921302d50aSBarry Smith             { PetscInt data;
3930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3940880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3950880e062SHong Zhang             }
3960880e062SHong Zhang #else
3970880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3980880e062SHong Zhang #endif
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4010880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4020880e062SHong Zhang             col  = (col - 1)/bs;
4030880e062SHong Zhang #else
4040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4050880e062SHong Zhang #endif
4060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4070880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4080880e062SHong Zhang               col =  in[j];
4090880e062SHong Zhang             }
4100880e062SHong Zhang           }
4110880e062SHong Zhang           else col = in[j];
412e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4130880e062SHong Zhang         }
4140880e062SHong Zhang       }
4150880e062SHong Zhang     } else {
4160880e062SHong Zhang       if (!baij->donotstash) {
4170880e062SHong Zhang         if (roworiented) {
4180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4190880e062SHong Zhang         } else {
4200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4210880e062SHong Zhang         }
4220880e062SHong Zhang       }
4230880e062SHong Zhang     }
4240880e062SHong Zhang   }
4250880e062SHong Zhang   PetscFunctionReturn(0);
426a30f8f8cSSatish Balay }
427a30f8f8cSSatish Balay 
4284a2ae208SSatish Balay #undef __FUNCT__
4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
431a30f8f8cSSatish Balay {
432f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4336849ba73SBarry Smith   PetscErrorCode ierr;
434899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
435899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
436a30f8f8cSSatish Balay 
437a30f8f8cSSatish Balay   PetscFunctionBegin;
438a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43977431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
440899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
441a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
442a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
443a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44477431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
445899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
446a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
447a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
448c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
449a30f8f8cSSatish Balay         } else {
450a30f8f8cSSatish Balay           if (!baij->colmap) {
451653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
452a30f8f8cSSatish Balay           }
453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
454a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
455a30f8f8cSSatish Balay           data --;
456a30f8f8cSSatish Balay #else
457a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
458a30f8f8cSSatish Balay #endif
459a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
460a30f8f8cSSatish Balay           else {
461a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
462e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
463a30f8f8cSSatish Balay           }
464a30f8f8cSSatish Balay         }
465a30f8f8cSSatish Balay       }
466a30f8f8cSSatish Balay     } else {
46729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
468a30f8f8cSSatish Balay     }
469a30f8f8cSSatish Balay   }
470a30f8f8cSSatish Balay  PetscFunctionReturn(0);
471a30f8f8cSSatish Balay }
472a30f8f8cSSatish Balay 
4734a2ae208SSatish Balay #undef __FUNCT__
4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
476a30f8f8cSSatish Balay {
477a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
480a30f8f8cSSatish Balay 
481a30f8f8cSSatish Balay   PetscFunctionBegin;
482a30f8f8cSSatish Balay   if (baij->size == 1) {
483a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
484a30f8f8cSSatish Balay   } else {
485a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
486f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
487a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
489a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
490a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
491d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
492a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
493a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4940b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4950b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4960b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4970b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
498899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
499899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5000b8dc8d2SHong Zhang       MatScalar    *v;
5010b8dc8d2SHong Zhang 
502899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
503899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
504899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5050b8dc8d2SHong Zhang       /* Amat */
5060b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5070b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5080b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5090b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5100b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5110b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5120b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5130b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5140b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5150b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5160b8dc8d2SHong Zhang               /* non-diagonal block */
5170b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5180b8dc8d2SHong Zhang             }
5190b8dc8d2SHong Zhang           }
5200b8dc8d2SHong Zhang         }
5210b8dc8d2SHong Zhang       }
5220b8dc8d2SHong Zhang       /* Bmat */
5230b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5240b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5250b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5260b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5270b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5280b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5290b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5300b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5310b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5320b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5330b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5340b8dc8d2SHong Zhang             }
5350b8dc8d2SHong Zhang           }
5360b8dc8d2SHong Zhang         }
5370b8dc8d2SHong Zhang       }
538899cda47SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5390b8dc8d2SHong Zhang       *norm = 0.0;
540899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5410b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5420b8dc8d2SHong Zhang       }
5430b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     } else {
54529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay   }
548a30f8f8cSSatish Balay   PetscFunctionReturn(0);
549a30f8f8cSSatish Balay }
550a30f8f8cSSatish Balay 
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
554a30f8f8cSSatish Balay {
555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
556dfbe8321SBarry Smith   PetscErrorCode ierr;
5571302d50aSBarry Smith   PetscInt       nstash,reallocs;
558a30f8f8cSSatish Balay   InsertMode     addv;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   if (baij->donotstash) {
562a30f8f8cSSatish Balay     PetscFunctionReturn(0);
563a30f8f8cSSatish Balay   }
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
566a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
571a30f8f8cSSatish Balay 
572899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
573899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
575ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
577ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
579a30f8f8cSSatish Balay }
580a30f8f8cSSatish Balay 
5814a2ae208SSatish Balay #undef __FUNCT__
5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
584a30f8f8cSSatish Balay {
585a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
586a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5876849ba73SBarry Smith   PetscErrorCode ierr;
58813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5891302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
59013f74950SBarry Smith   PetscMPIInt    n;
591a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
592a30f8f8cSSatish Balay   MatScalar      *val;
593a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
594a30f8f8cSSatish Balay 
59591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
596a30f8f8cSSatish Balay   PetscFunctionBegin;
597a30f8f8cSSatish Balay 
598a30f8f8cSSatish Balay   if (!baij->donotstash) {
599a30f8f8cSSatish Balay     while (1) {
600a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
601a30f8f8cSSatish Balay       if (!flg) break;
602a30f8f8cSSatish Balay 
603a30f8f8cSSatish Balay       for (i=0; i<n;) {
604a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
605a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
606a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
607a30f8f8cSSatish Balay         else       ncols = n-i;
608a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
609a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
610a30f8f8cSSatish Balay         i = j;
611a30f8f8cSSatish Balay       }
612a30f8f8cSSatish Balay     }
613a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
614a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
615a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
616a30f8f8cSSatish Balay        restore the original flags */
617a30f8f8cSSatish Balay     r1 = baij->roworiented;
618a30f8f8cSSatish Balay     r2 = a->roworiented;
61991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
620a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
621a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
623a30f8f8cSSatish Balay     while (1) {
624a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       if (!flg) break;
626a30f8f8cSSatish Balay 
627a30f8f8cSSatish Balay       for (i=0; i<n;) {
628a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
629a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
630a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
631a30f8f8cSSatish Balay         else       ncols = n-i;
632a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
633a30f8f8cSSatish Balay         i = j;
634a30f8f8cSSatish Balay       }
635a30f8f8cSSatish Balay     }
636a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
637a30f8f8cSSatish Balay     baij->roworiented = r1;
638a30f8f8cSSatish Balay     a->roworiented    = r2;
63991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
643a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
646a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
647a30f8f8cSSatish Balay   /*
648a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
649a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
650a30f8f8cSSatish Balay   */
651a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
652a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
654c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     }
656a30f8f8cSSatish Balay   }
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
660a30f8f8cSSatish Balay   }
66191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
662a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
663a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
666a30f8f8cSSatish Balay   baij->rowvalues = 0;
6675222a1afSHong Zhang 
668a30f8f8cSSatish Balay   PetscFunctionReturn(0);
669a30f8f8cSSatish Balay }
670a30f8f8cSSatish Balay 
6714a2ae208SSatish Balay #undef __FUNCT__
6724a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6736849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
674a30f8f8cSSatish Balay {
675a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
676dfbe8321SBarry Smith   PetscErrorCode    ierr;
677899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6781302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
67932077d6dSBarry Smith   PetscTruth        iascii,isdraw;
680b0a32e0cSBarry Smith   PetscViewer       sviewer;
681f3ef73ceSBarry Smith   PetscViewerFormat format;
682a30f8f8cSSatish Balay 
683a30f8f8cSSatish Balay   PetscFunctionBegin;
68432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
685fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68632077d6dSBarry Smith   if (iascii) {
687b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
688456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
689a30f8f8cSSatish Balay       MatInfo info;
690a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
691a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
693899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
694899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
695a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
697a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
699b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
700a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
701a30f8f8cSSatish Balay       PetscFunctionReturn(0);
702fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
704a30f8f8cSSatish Balay       PetscFunctionReturn(0);
705c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
706c1490034SHong Zhang       PetscFunctionReturn(0);
707a30f8f8cSSatish Balay     }
708a30f8f8cSSatish Balay   }
709a30f8f8cSSatish Balay 
710a30f8f8cSSatish Balay   if (isdraw) {
711b0a32e0cSBarry Smith     PetscDraw  draw;
712a30f8f8cSSatish Balay     PetscTruth isnull;
713b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
714b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
715a30f8f8cSSatish Balay   }
716a30f8f8cSSatish Balay 
717a30f8f8cSSatish Balay   if (size == 1) {
718e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
719a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
720a30f8f8cSSatish Balay   } else {
721a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
722a30f8f8cSSatish Balay     Mat          A;
72365d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72465d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
725899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
726a30f8f8cSSatish Balay     MatScalar    *a;
727a30f8f8cSSatish Balay 
728f204ca49SKris Buschelman     /* Should this be the same type as mat? */
729f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
730a30f8f8cSSatish Balay     if (!rank) {
731f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
732a30f8f8cSSatish Balay     } else {
733f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
734a30f8f8cSSatish Balay     }
735f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
736899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73752e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
738a30f8f8cSSatish Balay 
739a30f8f8cSSatish Balay     /* copy over the A part */
74065d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
741a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7421302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
743a30f8f8cSSatish Balay 
744a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
745e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
746a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
747a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
748e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
749a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
750a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
751a30f8f8cSSatish Balay           col++; a += bs;
752a30f8f8cSSatish Balay         }
753a30f8f8cSSatish Balay       }
754a30f8f8cSSatish Balay     }
755a30f8f8cSSatish Balay     /* copy over the B part */
75665d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75765d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
758a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
759e9f7bc9eSHong Zhang 
760e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
761a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
762a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
763a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
764a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
765e9f7bc9eSHong Zhang           ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
766a30f8f8cSSatish Balay           col++; a += bs;
767a30f8f8cSSatish Balay         }
768a30f8f8cSSatish Balay       }
769a30f8f8cSSatish Balay     }
770a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
771a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
773a30f8f8cSSatish Balay     /*
774a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
775b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
776a30f8f8cSSatish Balay     */
777b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
77865d70643SHong Zhang     if (!rank) {
779e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
780a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
781a30f8f8cSSatish Balay     }
782b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
783a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
784a30f8f8cSSatish Balay   }
785a30f8f8cSSatish Balay   PetscFunctionReturn(0);
786a30f8f8cSSatish Balay }
787a30f8f8cSSatish Balay 
7884a2ae208SSatish Balay #undef __FUNCT__
7894a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
790dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
791a30f8f8cSSatish Balay {
792dfbe8321SBarry Smith   PetscErrorCode ierr;
79332077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
794a30f8f8cSSatish Balay 
795a30f8f8cSSatish Balay   PetscFunctionBegin;
79632077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
797fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
798b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
799fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80032077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
801a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
802a30f8f8cSSatish Balay   } else {
8031302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
804a30f8f8cSSatish Balay   }
805a30f8f8cSSatish Balay   PetscFunctionReturn(0);
806a30f8f8cSSatish Balay }
807a30f8f8cSSatish Balay 
8084a2ae208SSatish Balay #undef __FUNCT__
8094a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
810dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
811a30f8f8cSSatish Balay {
812a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
813dfbe8321SBarry Smith   PetscErrorCode ierr;
814a30f8f8cSSatish Balay 
815a30f8f8cSSatish Balay   PetscFunctionBegin;
816a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
817899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
818a30f8f8cSSatish Balay #endif
819a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
820a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
821a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
823a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
824a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
825a30f8f8cSSatish Balay #else
82605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
827a30f8f8cSSatish Balay #endif
82805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
829a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
830a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83140781036SHong Zhang   if (baij->slvec0) {
83240781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83340781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83440781036SHong Zhang   }
83540781036SHong Zhang   if (baij->slvec1) {
83640781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83740781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83840781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
83940781036SHong Zhang   }
84040781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84105b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84305b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
844a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84505b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
846a30f8f8cSSatish Balay #endif
84759ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
84859ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
849899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
850a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
851901853e0SKris Buschelman 
852901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
853901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
854901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
855901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
856a30f8f8cSSatish Balay   PetscFunctionReturn(0);
857a30f8f8cSSatish Balay }
858a30f8f8cSSatish Balay 
8594a2ae208SSatish Balay #undef __FUNCT__
860a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
861dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
862a9d4b620SHong Zhang {
863a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
864dfbe8321SBarry Smith   PetscErrorCode ierr;
865899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
866a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
867a9d4b620SHong Zhang 
868a9d4b620SHong Zhang   PetscFunctionBegin;
869a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
870899cda47SBarry Smith   if (nt != A->cmap.n) {
871a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
872a9d4b620SHong Zhang   }
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang   /* diagonal part */
875a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8762dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
877a9d4b620SHong Zhang 
878a9d4b620SHong Zhang   /* subdiagonal part */
879a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
880899cda47SBarry Smith   CHKMEMQ;
881a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8821ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8831ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
884899cda47SBarry Smith   CHKMEMQ;
885a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
886899cda47SBarry Smith   CHKMEMQ;
8871ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
888a9d4b620SHong Zhang 
889899cda47SBarry Smith   CHKMEMQ;
890a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
891899cda47SBarry Smith   CHKMEMQ;
8921ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
893899cda47SBarry Smith   CHKMEMQ;
894a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
895899cda47SBarry Smith     CHKMEMQ;
896a9d4b620SHong Zhang   /* supperdiagonal part */
897a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
898899cda47SBarry Smith     CHKMEMQ;
899a9d4b620SHong Zhang   PetscFunctionReturn(0);
900a9d4b620SHong Zhang }
901a9d4b620SHong Zhang 
902a9d4b620SHong Zhang #undef __FUNCT__
90340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
904dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
905a30f8f8cSSatish Balay {
906a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
907dfbe8321SBarry Smith   PetscErrorCode ierr;
9081302d50aSBarry Smith   PetscInt       nt;
909a30f8f8cSSatish Balay 
910a30f8f8cSSatish Balay   PetscFunctionBegin;
911a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
912899cda47SBarry Smith   if (nt != A->cmap.n) {
91329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
914a30f8f8cSSatish Balay   }
915a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
916899cda47SBarry Smith   if (nt != A->rmap.N) {
91729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
918a30f8f8cSSatish Balay   }
91965d70643SHong Zhang 
920b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
921b941877fSHong Zhang   /* do diagonal part */
922b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
923b941877fSHong Zhang   /* do supperdiagonal part */
924b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
925b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
926b941877fSHong Zhang   /* do subdiagonal part */
927b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
928b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
929b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
93065d70643SHong Zhang 
931a30f8f8cSSatish Balay   PetscFunctionReturn(0);
932a30f8f8cSSatish Balay }
933a30f8f8cSSatish Balay 
9344a2ae208SSatish Balay #undef __FUNCT__
9354a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
936dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
937a30f8f8cSSatish Balay {
938de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
939dfbe8321SBarry Smith   PetscErrorCode ierr;
940899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
941a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
942a9d4b620SHong Zhang 
943a9d4b620SHong Zhang   PetscFunctionBegin;
944a9d4b620SHong Zhang   /*
94556faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
94656faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
947a9d4b620SHong Zhang   */
948a9d4b620SHong Zhang   /* diagonal part */
949a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9502dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
951a9d4b620SHong Zhang 
952a9d4b620SHong Zhang   /* subdiagonal part */
953a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
954a9d4b620SHong Zhang 
955a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9561ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9571ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
958a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9591ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
960a9d4b620SHong Zhang 
961a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9621ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
963a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
964a9d4b620SHong Zhang 
965a9d4b620SHong Zhang   /* supperdiagonal part */
966a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
967a9d4b620SHong Zhang 
968a9d4b620SHong Zhang   PetscFunctionReturn(0);
969a9d4b620SHong Zhang }
970a9d4b620SHong Zhang 
971a9d4b620SHong Zhang #undef __FUNCT__
972a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
973dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
974a9d4b620SHong Zhang {
975a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
976dfbe8321SBarry Smith   PetscErrorCode ierr;
977a30f8f8cSSatish Balay 
978a30f8f8cSSatish Balay   PetscFunctionBegin;
979b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
980b941877fSHong Zhang   /* do diagonal part */
981b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
982b941877fSHong Zhang   /* do supperdiagonal part */
983b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
984de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
985de8b6608SHong Zhang 
986b941877fSHong Zhang   /* do subdiagonal part */
987a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
988a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
989a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
990aa482183SHong Zhang 
991a30f8f8cSSatish Balay   PetscFunctionReturn(0);
992a30f8f8cSSatish Balay }
993a30f8f8cSSatish Balay 
994a30f8f8cSSatish Balay /*
995a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
996a30f8f8cSSatish Balay    diagonal block
997a30f8f8cSSatish Balay */
9984a2ae208SSatish Balay #undef __FUNCT__
9994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1000dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1001a30f8f8cSSatish Balay {
1002a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1003dfbe8321SBarry Smith   PetscErrorCode ierr;
1004a30f8f8cSSatish Balay 
1005a30f8f8cSSatish Balay   PetscFunctionBegin;
1006899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1007a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1008a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1009a30f8f8cSSatish Balay }
1010a30f8f8cSSatish Balay 
10114a2ae208SSatish Balay #undef __FUNCT__
10124a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1013f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1014a30f8f8cSSatish Balay {
1015a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1016dfbe8321SBarry Smith   PetscErrorCode ierr;
1017a30f8f8cSSatish Balay 
1018a30f8f8cSSatish Balay   PetscFunctionBegin;
1019f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1020f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1021a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1022a30f8f8cSSatish Balay }
1023a30f8f8cSSatish Balay 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10261302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1027a30f8f8cSSatish Balay {
1028d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1029d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1030d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1031899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1032899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1033899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1034d0d4cfc2SHong Zhang 
1035a30f8f8cSSatish Balay   PetscFunctionBegin;
1036d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1037d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1038d0d4cfc2SHong Zhang 
1039d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1040d0d4cfc2SHong Zhang     /*
1041d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1042d0d4cfc2SHong Zhang     */
1043d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1044d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1045d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1046d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1047d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1048d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1049d0d4cfc2SHong Zhang     }
1050d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1051d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1052d0d4cfc2SHong Zhang   }
1053d0d4cfc2SHong Zhang 
1054d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1055d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1056d0d4cfc2SHong Zhang 
1057d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1058d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1059d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1060d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1061d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1062d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1063d0d4cfc2SHong Zhang 
1064d0d4cfc2SHong Zhang   cmap  = mat->garray;
1065d0d4cfc2SHong Zhang   if (v  || idx) {
1066d0d4cfc2SHong Zhang     if (nztot) {
1067d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1068d0d4cfc2SHong Zhang       PetscInt imark = -1;
1069d0d4cfc2SHong Zhang       if (v) {
1070d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1071d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1072d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1073d0d4cfc2SHong Zhang           else break;
1074d0d4cfc2SHong Zhang         }
1075d0d4cfc2SHong Zhang         imark = i;
1076d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1077d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1078d0d4cfc2SHong Zhang       }
1079d0d4cfc2SHong Zhang       if (idx) {
1080d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1081d0d4cfc2SHong Zhang         if (imark > -1) {
1082d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1083d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1084d0d4cfc2SHong Zhang           }
1085d0d4cfc2SHong Zhang         } else {
1086d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1087d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1088d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1089d0d4cfc2SHong Zhang             else break;
1090d0d4cfc2SHong Zhang           }
1091d0d4cfc2SHong Zhang           imark = i;
1092d0d4cfc2SHong Zhang         }
1093d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1094d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1095d0d4cfc2SHong Zhang       }
1096d0d4cfc2SHong Zhang     } else {
1097d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1098d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1099d0d4cfc2SHong Zhang     }
1100d0d4cfc2SHong Zhang   }
1101d0d4cfc2SHong Zhang   *nz = nztot;
1102d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1103d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1104a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1105a30f8f8cSSatish Balay }
1106a30f8f8cSSatish Balay 
11074a2ae208SSatish Balay #undef __FUNCT__
11084a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11091302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1110a30f8f8cSSatish Balay {
1111a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1112a30f8f8cSSatish Balay 
1113a30f8f8cSSatish Balay   PetscFunctionBegin;
1114abc0a331SBarry Smith   if (!baij->getrowactive) {
1115abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1116a30f8f8cSSatish Balay   }
1117a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1118a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1119a30f8f8cSSatish Balay }
1120a30f8f8cSSatish Balay 
11214a2ae208SSatish Balay #undef __FUNCT__
1122d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1123d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1124d0d4cfc2SHong Zhang {
1125d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1126d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1127d0d4cfc2SHong Zhang 
1128d0d4cfc2SHong Zhang   PetscFunctionBegin;
1129d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1130d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1131d0d4cfc2SHong Zhang }
1132d0d4cfc2SHong Zhang #undef __FUNCT__
1133d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1134d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1135d0d4cfc2SHong Zhang {
1136d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1137d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1138d0d4cfc2SHong Zhang 
1139d0d4cfc2SHong Zhang   PetscFunctionBegin;
1140d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1141d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1142d0d4cfc2SHong Zhang }
1143d0d4cfc2SHong Zhang 
1144d0d4cfc2SHong Zhang #undef __FUNCT__
114599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
114799cafbc1SBarry Smith {
114899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
114999cafbc1SBarry Smith   PetscErrorCode ierr;
115099cafbc1SBarry Smith 
115199cafbc1SBarry Smith   PetscFunctionBegin;
115299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115499cafbc1SBarry Smith   PetscFunctionReturn(0);
115599cafbc1SBarry Smith }
115699cafbc1SBarry Smith 
115799cafbc1SBarry Smith #undef __FUNCT__
115899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
115999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
116099cafbc1SBarry Smith {
116199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
116299cafbc1SBarry Smith   PetscErrorCode ierr;
116399cafbc1SBarry Smith 
116499cafbc1SBarry Smith   PetscFunctionBegin;
116599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
116799cafbc1SBarry Smith   PetscFunctionReturn(0);
116899cafbc1SBarry Smith }
116999cafbc1SBarry Smith 
117099cafbc1SBarry Smith #undef __FUNCT__
11714a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1172dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1173a30f8f8cSSatish Balay {
1174a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1175dfbe8321SBarry Smith   PetscErrorCode ierr;
1176a30f8f8cSSatish Balay 
1177a30f8f8cSSatish Balay   PetscFunctionBegin;
1178a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1179a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1180a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1181a30f8f8cSSatish Balay }
1182a30f8f8cSSatish Balay 
11834a2ae208SSatish Balay #undef __FUNCT__
11844a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1185dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1186a30f8f8cSSatish Balay {
1187a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1188a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1189dfbe8321SBarry Smith   PetscErrorCode ierr;
1190a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1191a30f8f8cSSatish Balay 
1192a30f8f8cSSatish Balay   PetscFunctionBegin;
1193899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1194a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1195a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1196a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1197a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1198a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1199a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1200a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1201a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1202a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1203a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1204a30f8f8cSSatish Balay     info->memory       = isend[3];
1205a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1206a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1207d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1208a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1209a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1210a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1211a30f8f8cSSatish Balay     info->memory       = irecv[3];
1212a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1213a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1214d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1215a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1216a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1217a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1218a30f8f8cSSatish Balay     info->memory       = irecv[3];
1219a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1220a30f8f8cSSatish Balay   } else {
122177431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1222a30f8f8cSSatish Balay   }
1223899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1224899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1225899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1226899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1227a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1228a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1229a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1235dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1238d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1239dfbe8321SBarry Smith   PetscErrorCode ierr;
1240a30f8f8cSSatish Balay 
1241a30f8f8cSSatish Balay   PetscFunctionBegin;
1242e98b92d7SKris Buschelman   switch (op) {
1243e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1244e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1245e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1246e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1247e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1248e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1249e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1250a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1251a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1252e98b92d7SKris Buschelman     break;
1253e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1254a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1255a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1256a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1257e98b92d7SKris Buschelman     break;
1258e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1259e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1260e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1261ad86a440SBarry Smith     ierr = PetscInfo1(A,"Option %d ignored\n",op);CHKERRQ(ierr);
1262e98b92d7SKris Buschelman     break;
1263e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1264a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1265a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1266a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1267e98b92d7SKris Buschelman     break;
1268e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1269a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1270e98b92d7SKris Buschelman     break;
1271e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
127229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1273e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1274a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1275e98b92d7SKris Buschelman     break;
12769a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12779a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12789a4540c5SBarry Smith   case MAT_HERMITIAN:
12799a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
128077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
128177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12829a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12839a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12849a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
128577e54ba9SKris Buschelman     break;
1286d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
1287d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_TRUE;
1288d0d4cfc2SHong Zhang     break;
1289d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
1290d0d4cfc2SHong Zhang     aA->ignore_ltriangular = PETSC_FALSE;
1291d0d4cfc2SHong Zhang     break;
1292d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
1293d0d4cfc2SHong Zhang     aA->getrow_utriangular = PETSC_TRUE;
1294d0d4cfc2SHong Zhang     break;
1295e98b92d7SKris Buschelman   default:
1296ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1297a30f8f8cSSatish Balay   }
1298a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1299a30f8f8cSSatish Balay }
1300a30f8f8cSSatish Balay 
13014a2ae208SSatish Balay #undef __FUNCT__
13028115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1303dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1304a30f8f8cSSatish Balay {
1305dfbe8321SBarry Smith   PetscErrorCode ierr;
1306a30f8f8cSSatish Balay   PetscFunctionBegin;
1307999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13088115998fSBarry Smith   PetscFunctionReturn(0);
1309a30f8f8cSSatish Balay }
1310a30f8f8cSSatish Balay 
13114a2ae208SSatish Balay #undef __FUNCT__
13124a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1313dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1314a30f8f8cSSatish Balay {
1315a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1316a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1317dfbe8321SBarry Smith   PetscErrorCode ierr;
13185e90f9d9SHong Zhang   PetscInt       nv,m,n;
1319b3bf805bSHong Zhang   PetscTruth     flg;
1320a30f8f8cSSatish Balay 
1321a30f8f8cSSatish Balay   PetscFunctionBegin;
1322a30f8f8cSSatish Balay   if (ll != rr){
1323b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1324b3bf805bSHong Zhang     if (!flg)
132529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1326a30f8f8cSSatish Balay   }
1327b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1328b3bf805bSHong Zhang 
13295e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13305e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1331b3bf805bSHong Zhang 
13325e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13335e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13345e90f9d9SHong Zhang 
1335a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
13365e90f9d9SHong Zhang 
13375e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1338a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13395e90f9d9SHong Zhang 
13405e90f9d9SHong Zhang   /* scale the diagonal part */
1341a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1342a30f8f8cSSatish Balay 
13435e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1344a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1345a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1346a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1347a30f8f8cSSatish Balay }
1348a30f8f8cSSatish Balay 
13494a2ae208SSatish Balay #undef __FUNCT__
13504a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1351dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1352a30f8f8cSSatish Balay {
1353f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1354dfbe8321SBarry Smith   PetscErrorCode ierr;
1355a30f8f8cSSatish Balay 
1356a30f8f8cSSatish Balay   PetscFunctionBegin;
1357a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1358a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1359a30f8f8cSSatish Balay }
1360a30f8f8cSSatish Balay 
13616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1362a30f8f8cSSatish Balay 
13634a2ae208SSatish Balay #undef __FUNCT__
13644a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1365dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1366a30f8f8cSSatish Balay {
1367a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1368a30f8f8cSSatish Balay   Mat            a,b,c,d;
1369a30f8f8cSSatish Balay   PetscTruth     flg;
1370dfbe8321SBarry Smith   PetscErrorCode ierr;
1371a30f8f8cSSatish Balay 
1372a30f8f8cSSatish Balay   PetscFunctionBegin;
1373a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1374a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1375a30f8f8cSSatish Balay 
1376a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1377abc0a331SBarry Smith   if (flg) {
1378a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1379a30f8f8cSSatish Balay   }
1380a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1381a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1382a30f8f8cSSatish Balay }
1383a30f8f8cSSatish Balay 
13844a2ae208SSatish Balay #undef __FUNCT__
13853c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13863c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13873c896bc6SHong Zhang {
13883c896bc6SHong Zhang   PetscErrorCode ierr;
13893c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13903c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13913c896bc6SHong Zhang 
13923c896bc6SHong Zhang   PetscFunctionBegin;
13933c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13943c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1395d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13963c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1397d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13983c896bc6SHong Zhang   } else {
13993c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14003c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14013c896bc6SHong Zhang   }
14023c896bc6SHong Zhang   PetscFunctionReturn(0);
14033c896bc6SHong Zhang }
14043c896bc6SHong Zhang 
14053c896bc6SHong Zhang #undef __FUNCT__
14064a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1407dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1408273d9f13SBarry Smith {
1409dfbe8321SBarry Smith   PetscErrorCode ierr;
1410273d9f13SBarry Smith 
1411273d9f13SBarry Smith   PetscFunctionBegin;
14127edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1413273d9f13SBarry Smith   PetscFunctionReturn(0);
1414273d9f13SBarry Smith }
1415a5e6ed63SBarry Smith 
14164fe895cdSHong Zhang #include "petscblaslapack.h"
14174fe895cdSHong Zhang #undef __FUNCT__
14184fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14194fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14204fe895cdSHong Zhang {
14214fe895cdSHong Zhang   PetscErrorCode ierr;
14224fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14234fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14244fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14254fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14264fe895cdSHong Zhang 
14274fe895cdSHong Zhang   PetscFunctionBegin;
14284fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14294fe895cdSHong Zhang     PetscScalar alpha = a;
14304fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14314fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14324fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
14334fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14344fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14354fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14364fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
14374fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14384fe895cdSHong Zhang   } else {
1439d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14404fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1441d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14424fe895cdSHong Zhang   }
14434fe895cdSHong Zhang   PetscFunctionReturn(0);
14444fe895cdSHong Zhang }
14454fe895cdSHong Zhang 
1446a5e6ed63SBarry Smith #undef __FUNCT__
1447a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14481302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1449a5e6ed63SBarry Smith {
14506849ba73SBarry Smith   PetscErrorCode ierr;
14511302d50aSBarry Smith   PetscInt       i;
1452a5e6ed63SBarry Smith   PetscTruth     flg;
1453a5e6ed63SBarry Smith 
14546849ba73SBarry Smith   PetscFunctionBegin;
1455a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1456a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1457a5e6ed63SBarry Smith     if (!flg) {
14581302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1459a5e6ed63SBarry Smith     }
1460a5e6ed63SBarry Smith   }
1461a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1462a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1463a5e6ed63SBarry Smith }
1464a5e6ed63SBarry Smith 
1465a5e6ed63SBarry Smith 
1466a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1467a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1468a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1470a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1471a9d4b620SHong Zhang        MatMult_MPISBAIJ,
147297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1473431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1474431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1475a30f8f8cSSatish Balay        0,
1476a30f8f8cSSatish Balay        0,
1477a30f8f8cSSatish Balay        0,
147897304618SKris Buschelman /*10*/ 0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
14812798e883SHong Zhang        MatRelax_MPISBAIJ,
1482a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
148397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1484a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1485a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1486a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1487a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
148897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1489a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1490a30f8f8cSSatish Balay        0,
1491a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1492a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1493dcf5cc72SBarry Smith /*25*/ 0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
1496a30f8f8cSSatish Balay        0,
1497a30f8f8cSSatish Balay        0,
149897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1499b5df2d14SHong Zhang        0,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        0,
1502a30f8f8cSSatish Balay        0,
150397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        0,
1506a30f8f8cSSatish Balay        0,
1507a30f8f8cSSatish Balay        0,
15084fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1509a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1510d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1511a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
15123c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1513*8c07d4e3SBarry Smith /*45*/ 0,
1514a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1515a30f8f8cSSatish Balay        0,
1516a30f8f8cSSatish Balay        0,
1517a30f8f8cSSatish Balay        0,
1518521d7252SBarry Smith /*50*/ 0,
1519a30f8f8cSSatish Balay        0,
1520a30f8f8cSSatish Balay        0,
1521a30f8f8cSSatish Balay        0,
1522a30f8f8cSSatish Balay        0,
152397304618SKris Buschelman /*55*/ 0,
1524a30f8f8cSSatish Balay        0,
1525a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1526a30f8f8cSSatish Balay        0,
1527a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
152897304618SKris Buschelman /*60*/ 0,
1529a30f8f8cSSatish Balay        0,
1530a30f8f8cSSatish Balay        0,
1531357abbc8SBarry Smith        0,
153224d5174aSHong Zhang        0,
153397304618SKris Buschelman /*65*/ 0,
153424d5174aSHong Zhang        0,
153524d5174aSHong Zhang        0,
153624d5174aSHong Zhang        0,
153724d5174aSHong Zhang        0,
153897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
153924d5174aSHong Zhang        0,
154097304618SKris Buschelman        0,
154197304618SKris Buschelman        0,
154297304618SKris Buschelman        0,
154397304618SKris Buschelman /*75*/ 0,
154497304618SKris Buschelman        0,
154597304618SKris Buschelman        0,
154697304618SKris Buschelman        0,
154797304618SKris Buschelman        0,
154897304618SKris Buschelman /*80*/ 0,
154997304618SKris Buschelman        0,
155097304618SKris Buschelman        0,
155197304618SKris Buschelman        0,
1552865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1553865e5f61SKris Buschelman /*85*/ 0,
1554865e5f61SKris Buschelman        0,
1555865e5f61SKris Buschelman        0,
1556865e5f61SKris Buschelman        0,
1557865e5f61SKris Buschelman        0,
1558865e5f61SKris Buschelman /*90*/ 0,
1559865e5f61SKris Buschelman        0,
1560865e5f61SKris Buschelman        0,
1561865e5f61SKris Buschelman        0,
1562865e5f61SKris Buschelman        0,
1563865e5f61SKris Buschelman /*95*/ 0,
1564865e5f61SKris Buschelman        0,
1565865e5f61SKris Buschelman        0,
156699cafbc1SBarry Smith        0,
156799cafbc1SBarry Smith        0,
156899cafbc1SBarry Smith /*100*/0,
156999cafbc1SBarry Smith        0,
157099cafbc1SBarry Smith        0,
157199cafbc1SBarry Smith        0,
157299cafbc1SBarry Smith        0,
157399cafbc1SBarry Smith /*105*/0,
157499cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1575d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1576d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1577d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
157899cafbc1SBarry Smith };
1579a30f8f8cSSatish Balay 
1580a30f8f8cSSatish Balay 
1581a30f8f8cSSatish Balay EXTERN_C_BEGIN
15824a2ae208SSatish Balay #undef __FUNCT__
15834a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1584be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1585a30f8f8cSSatish Balay {
1586a30f8f8cSSatish Balay   PetscFunctionBegin;
1587a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1588a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1589a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1590a30f8f8cSSatish Balay }
1591a30f8f8cSSatish Balay EXTERN_C_END
1592a30f8f8cSSatish Balay 
1593273d9f13SBarry Smith EXTERN_C_BEGIN
15944a2ae208SSatish Balay #undef __FUNCT__
1595a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1596be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1597a23d5eceSKris Buschelman {
1598a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1599dfbe8321SBarry Smith   PetscErrorCode ierr;
16001302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1601a23d5eceSKris Buschelman 
1602a23d5eceSKris Buschelman   PetscFunctionBegin;
1603*8c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
1604*8c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
1605*8c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1606a23d5eceSKris Buschelman 
1607a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1608a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1609a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
161077431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
161177431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1612899cda47SBarry Smith 
1613899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
1614899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
1615899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
1616899cda47SBarry Smith 
1617a23d5eceSKris Buschelman   if (d_nnz) {
1618899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
161977431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1620a23d5eceSKris Buschelman     }
1621a23d5eceSKris Buschelman   }
1622a23d5eceSKris Buschelman   if (o_nnz) {
1623899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
162477431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1625a23d5eceSKris Buschelman     }
1626a23d5eceSKris Buschelman   }
1627a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1628a23d5eceSKris Buschelman 
1629a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1630899cda47SBarry Smith   mbs = B->rmap.n/bs;
1631899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1632899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1633899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1634a23d5eceSKris Buschelman   }
1635a23d5eceSKris Buschelman 
1636899cda47SBarry Smith   B->rmap.bs  = bs;
1637a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1638a23d5eceSKris Buschelman   b->mbs = mbs;
1639a23d5eceSKris Buschelman   b->nbs = mbs;
1640a23d5eceSKris Buschelman   b->Mbs = Mbs;
1641a23d5eceSKris Buschelman   b->Nbs = Mbs;
1642a23d5eceSKris Buschelman 
1643a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1644899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1645a23d5eceSKris Buschelman   }
1646899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1647899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1648a23d5eceSKris Buschelman 
1649899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1650899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1651a23d5eceSKris Buschelman 
1652f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1653899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16549c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1655c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
165652e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16579c097c71SKris Buschelman 
1658f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1659899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16604aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1661589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
166252e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1663a23d5eceSKris Buschelman 
1664a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1665a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1666a23d5eceSKris Buschelman 
1667a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1668a23d5eceSKris Buschelman }
1669a23d5eceSKris Buschelman EXTERN_C_END
1670a23d5eceSKris Buschelman 
16710bad9183SKris Buschelman /*MC
1672fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16730bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16740bad9183SKris Buschelman 
16750bad9183SKris Buschelman    Options Database Keys:
16760bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16770bad9183SKris Buschelman 
16780bad9183SKris Buschelman   Level: beginner
16790bad9183SKris Buschelman 
16800bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16810bad9183SKris Buschelman M*/
16820bad9183SKris Buschelman 
1683a23d5eceSKris Buschelman EXTERN_C_BEGIN
1684a23d5eceSKris Buschelman #undef __FUNCT__
16854a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1686be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1687b5df2d14SHong Zhang {
1688b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1689dfbe8321SBarry Smith   PetscErrorCode ierr;
1690b5df2d14SHong Zhang   PetscTruth     flg;
1691b5df2d14SHong Zhang 
1692b5df2d14SHong Zhang   PetscFunctionBegin;
1693b5df2d14SHong Zhang 
1694b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1695b0a32e0cSBarry Smith   B->data = (void*)b;
1696b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1697b5df2d14SHong Zhang 
1698b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1699b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1700b5df2d14SHong Zhang   B->mapping    = 0;
1701b5df2d14SHong Zhang   B->factor     = 0;
1702b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1703b5df2d14SHong Zhang 
1704b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1705b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1706b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1707b5df2d14SHong Zhang 
1708b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1709899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* build cache for off array entries formed */
1712b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1713b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1714b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1715b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1716b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1717b5df2d14SHong Zhang 
1718f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1719b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
172064a35ccbSBarry Smith   b->setvalueslen     = 0;
1721b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1722b5df2d14SHong Zhang #endif
1723b5df2d14SHong Zhang 
1724b5df2d14SHong Zhang   /* stuff used in block assembly */
1725b5df2d14SHong Zhang   b->barray       = 0;
1726b5df2d14SHong Zhang 
1727b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1728b5df2d14SHong Zhang   b->lvec         = 0;
1729b5df2d14SHong Zhang   b->Mvctx        = 0;
173040781036SHong Zhang   b->slvec0       = 0;
173140781036SHong Zhang   b->slvec0b      = 0;
173240781036SHong Zhang   b->slvec1       = 0;
173340781036SHong Zhang   b->slvec1a      = 0;
173440781036SHong Zhang   b->slvec1b      = 0;
173540781036SHong Zhang   b->sMvctx       = 0;
1736b5df2d14SHong Zhang 
1737b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1738b5df2d14SHong Zhang   b->rowindices   = 0;
1739b5df2d14SHong Zhang   b->rowvalues    = 0;
1740b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1741b5df2d14SHong Zhang 
1742b5df2d14SHong Zhang   /* hash table stuff */
1743b5df2d14SHong Zhang   b->ht           = 0;
1744b5df2d14SHong Zhang   b->hd           = 0;
1745b5df2d14SHong Zhang   b->ht_size      = 0;
1746b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1747b5df2d14SHong Zhang   b->ht_fact      = 0;
1748b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1749b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1750b5df2d14SHong Zhang 
175159ffdab8SBarry Smith   b->in_loc       = 0;
175259ffdab8SBarry Smith   b->v_loc        = 0;
175359ffdab8SBarry Smith   b->n_loc        = 0;
1754*8c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr);
1755*8c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1756b5df2d14SHong Zhang     if (flg) {
1757f6275e2eSBarry Smith       PetscReal fact = 1.39;
1758b5df2d14SHong Zhang       ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1759*8c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1760b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1761b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1762ae15b995SBarry Smith       ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1763b5df2d14SHong Zhang     }
1764*8c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1765*8c07d4e3SBarry Smith 
1766b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1767b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1768b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1769b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1770b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1771b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1772b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1773b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1774b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1775a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1776a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1777a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
177823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
177923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1782b5df2d14SHong Zhang   PetscFunctionReturn(0);
1783b5df2d14SHong Zhang }
1784273d9f13SBarry Smith EXTERN_C_END
1785b5df2d14SHong Zhang 
1786209238afSKris Buschelman /*MC
1787002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1788209238afSKris Buschelman 
1789209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1790209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1791209238afSKris Buschelman 
1792209238afSKris Buschelman    Options Database Keys:
1793209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1794209238afSKris Buschelman 
1795209238afSKris Buschelman   Level: beginner
1796209238afSKris Buschelman 
1797209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1798209238afSKris Buschelman M*/
1799209238afSKris Buschelman 
1800209238afSKris Buschelman EXTERN_C_BEGIN
1801209238afSKris Buschelman #undef __FUNCT__
1802209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1803be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1804dfbe8321SBarry Smith {
18056849ba73SBarry Smith   PetscErrorCode ierr;
18061302d50aSBarry Smith   PetscMPIInt    size;
1807209238afSKris Buschelman 
1808209238afSKris Buschelman   PetscFunctionBegin;
1809209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1810209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1811209238afSKris Buschelman   if (size == 1) {
1812209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1813209238afSKris Buschelman   } else {
1814209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1815209238afSKris Buschelman   }
1816209238afSKris Buschelman   PetscFunctionReturn(0);
1817209238afSKris Buschelman }
1818209238afSKris Buschelman EXTERN_C_END
1819209238afSKris Buschelman 
18204a2ae208SSatish Balay #undef __FUNCT__
18214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1822b5df2d14SHong Zhang /*@C
1823b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1824b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1825b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1826b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1827b5df2d14SHong Zhang 
1828b5df2d14SHong Zhang    Collective on Mat
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Input Parameters:
1831b5df2d14SHong Zhang +  A - the matrix
1832b5df2d14SHong Zhang .  bs   - size of blockk
1833b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1834b5df2d14SHong Zhang            submatrix  (same for all local rows)
1835b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18366d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18376d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18386d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1839b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1840b5df2d14SHong Zhang            submatrix (same for all local rows).
1841b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1842b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1843b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang 
1846b5df2d14SHong Zhang    Options Database Keys:
1847b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1848b5df2d14SHong Zhang                      block calculations (much slower)
1849b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1850b5df2d14SHong Zhang 
1851b5df2d14SHong Zhang    Notes:
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1854b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1855b5df2d14SHong Zhang 
185649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
185749a6f317SBarry Smith 
1858b5df2d14SHong Zhang    Storage Information:
1859b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1860b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1861b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1862b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1865b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1866b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1867b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1868b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1869b5df2d14SHong Zhang 
1870b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1871b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1872b5df2d14SHong Zhang 
1873b5df2d14SHong Zhang .vb
1874b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1875b5df2d14SHong Zhang           -------------------
1876b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1877b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1878b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1879b5df2d14SHong Zhang           -------------------
1880b5df2d14SHong Zhang .ve
1881b5df2d14SHong Zhang 
1882b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1883b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18846d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18856d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1886b5df2d14SHong Zhang 
18876d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18886d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1889b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1890b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1891b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1892b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1893b5df2d14SHong Zhang    matrices.
1894b5df2d14SHong Zhang 
1895b5df2d14SHong Zhang    Level: intermediate
1896b5df2d14SHong Zhang 
1897b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1898b5df2d14SHong Zhang 
1899b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1900b5df2d14SHong Zhang @*/
1901be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1902b5df2d14SHong Zhang {
19031302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1904b5df2d14SHong Zhang 
1905b5df2d14SHong Zhang   PetscFunctionBegin;
1906a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1907a23d5eceSKris Buschelman   if (f) {
1908a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1909b5df2d14SHong Zhang   }
1910b5df2d14SHong Zhang   PetscFunctionReturn(0);
1911b5df2d14SHong Zhang }
1912b5df2d14SHong Zhang 
19134a2ae208SSatish Balay #undef __FUNCT__
19144a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1915a30f8f8cSSatish Balay /*@C
1916a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1917a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1918a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1919a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1920a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1921a30f8f8cSSatish Balay 
1922a30f8f8cSSatish Balay    Collective on MPI_Comm
1923a30f8f8cSSatish Balay 
1924a30f8f8cSSatish Balay    Input Parameters:
1925a30f8f8cSSatish Balay +  comm - MPI communicator
1926a30f8f8cSSatish Balay .  bs   - size of blockk
1927a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1928a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1929a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1930a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1931a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1932a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1933a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1934a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1935a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1936a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1937a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19386d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19396d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19406d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1941a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1942a30f8f8cSSatish Balay            submatrix (same for all local rows).
1943a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1944a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1945a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1946a30f8f8cSSatish Balay 
1947a30f8f8cSSatish Balay    Output Parameter:
1948a30f8f8cSSatish Balay .  A - the matrix
1949a30f8f8cSSatish Balay 
1950a30f8f8cSSatish Balay    Options Database Keys:
1951a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1952a30f8f8cSSatish Balay                      block calculations (much slower)
1953a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1954a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1955a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1956a30f8f8cSSatish Balay 
1957a30f8f8cSSatish Balay    Notes:
1958d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1959d1be2dadSMatthew Knepley 
1960a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1961a30f8f8cSSatish Balay    (possibly both).
1962a30f8f8cSSatish Balay 
1963a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1964a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1965a30f8f8cSSatish Balay 
196649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
196749a6f317SBarry Smith 
1968a30f8f8cSSatish Balay    Storage Information:
1969a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1970a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1971a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1972a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1973a30f8f8cSSatish Balay 
1974a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1975a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1976a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1977a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1978a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1979a30f8f8cSSatish Balay 
1980a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1981a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1982a30f8f8cSSatish Balay 
1983a30f8f8cSSatish Balay .vb
1984a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1985a30f8f8cSSatish Balay           -------------------
1986a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1987a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1988a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1989a30f8f8cSSatish Balay           -------------------
1990a30f8f8cSSatish Balay .ve
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1993a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19946d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19956d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1996a30f8f8cSSatish Balay 
19976d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19986d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1999a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2000a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2001a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2002a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2003a30f8f8cSSatish Balay    matrices.
2004a30f8f8cSSatish Balay 
2005a30f8f8cSSatish Balay    Level: intermediate
2006a30f8f8cSSatish Balay 
2007a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2008a30f8f8cSSatish Balay 
2009a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2010a30f8f8cSSatish Balay @*/
2011a30f8f8cSSatish Balay 
2012be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2013a30f8f8cSSatish Balay {
20146849ba73SBarry Smith   PetscErrorCode ierr;
20151302d50aSBarry Smith   PetscMPIInt    size;
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay   PetscFunctionBegin;
2018f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2019f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2020273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2021273d9f13SBarry Smith   if (size > 1) {
2022b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2023b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2024273d9f13SBarry Smith   } else {
2025273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2026273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2027273d9f13SBarry Smith   }
2028a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2029a30f8f8cSSatish Balay }
2030a30f8f8cSSatish Balay 
2031a30f8f8cSSatish Balay 
20324a2ae208SSatish Balay #undef __FUNCT__
20334a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20346849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2035a30f8f8cSSatish Balay {
2036a30f8f8cSSatish Balay   Mat            mat;
2037a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2038dfbe8321SBarry Smith   PetscErrorCode ierr;
2039899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2040387bc808SHong Zhang   PetscScalar    *array;
2041a30f8f8cSSatish Balay 
2042a30f8f8cSSatish Balay   PetscFunctionBegin;
2043a30f8f8cSSatish Balay   *newmat       = 0;
2044f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2045899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2046be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20471d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2048899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2049899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2050e1b6402fSHong Zhang 
205182327fa8SHong Zhang   mat->factor       = matin->factor;
2052273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
205382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20547fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20557fff6886SHong Zhang 
2056b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2057a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2058a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2059a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2060a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2061a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2062a30f8f8cSSatish Balay 
2063899cda47SBarry Smith 
2064a30f8f8cSSatish Balay   a->size         = oldmat->size;
2065a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2066a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2067a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2068a30f8f8cSSatish Balay   a->rowindices   = 0;
2069a30f8f8cSSatish Balay   a->rowvalues    = 0;
2070a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2071a30f8f8cSSatish Balay   a->barray       = 0;
2072899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2073899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2074899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2075899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2076a30f8f8cSSatish Balay 
2077a30f8f8cSSatish Balay   /* hash table stuff */
2078a30f8f8cSSatish Balay   a->ht           = 0;
2079a30f8f8cSSatish Balay   a->hd           = 0;
2080a30f8f8cSSatish Balay   a->ht_size      = 0;
2081a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2082a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2083a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2084a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2085a30f8f8cSSatish Balay 
2086899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2087a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2088899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2089a30f8f8cSSatish Balay   if (oldmat->colmap) {
2090a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2091a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2092a30f8f8cSSatish Balay #else
20931302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
209452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20951302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2096a30f8f8cSSatish Balay #endif
2097a30f8f8cSSatish Balay   } else a->colmap = 0;
2098387bc808SHong Zhang 
2099a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21001302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
210152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21021302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2103a30f8f8cSSatish Balay   } else a->garray = 0;
2104a30f8f8cSSatish Balay 
2105a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
210652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2107a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
210852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
210982327fa8SHong Zhang 
211082327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
211152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
211352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2114387bc808SHong Zhang 
2115387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21161ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2117387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2118387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21191ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21201ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2121387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21221ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
212352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
212552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
212752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2128387bc808SHong Zhang 
2129387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2130387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2131387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
213252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
213382327fa8SHong Zhang 
2134a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2136a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2138b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2139a30f8f8cSSatish Balay   *newmat = mat;
2140a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2141a30f8f8cSSatish Balay }
2142a30f8f8cSSatish Balay 
2143a30f8f8cSSatish Balay #include "petscsys.h"
2144a30f8f8cSSatish Balay 
21454a2ae208SSatish Balay #undef __FUNCT__
21464a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2147f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2148a30f8f8cSSatish Balay {
2149a30f8f8cSSatish Balay   Mat            A;
21506849ba73SBarry Smith   PetscErrorCode ierr;
215113f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
215287828ca2SBarry Smith   PetscScalar    *vals,*buf;
2153a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2154a30f8f8cSSatish Balay   MPI_Status     status;
21552fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
215613f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21572fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21581302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21591302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21601302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
216113f74950SBarry Smith   int            fd;
2162a30f8f8cSSatish Balay 
2163a30f8f8cSSatish Balay   PetscFunctionBegin;
2164*8c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2165*8c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
2166*8c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2167a30f8f8cSSatish Balay 
2168a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2169a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2170a30f8f8cSSatish Balay   if (!rank) {
2171b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2172a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2173552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2174a30f8f8cSSatish Balay     if (header[3] < 0) {
217529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2176a30f8f8cSSatish Balay     }
2177a30f8f8cSSatish Balay   }
2178a30f8f8cSSatish Balay 
2179a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2180a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2181a30f8f8cSSatish Balay 
218229bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2183a30f8f8cSSatish Balay 
2184a30f8f8cSSatish Balay   /*
2185a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2186a30f8f8cSSatish Balay      divisible by the blocksize
2187a30f8f8cSSatish Balay   */
2188a30f8f8cSSatish Balay   Mbs        = M/bs;
2189a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2190a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2191a30f8f8cSSatish Balay   else                  Mbs++;
2192a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2193ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2194a30f8f8cSSatish Balay   }
2195a30f8f8cSSatish Balay 
2196a30f8f8cSSatish Balay   /* determine ownership of all rows */
2197a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2198a30f8f8cSSatish Balay   m          = mbs*bs;
2199a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2200a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2201a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay   rowners[0] = 0;
2203a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2204a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2205a30f8f8cSSatish Balay   rstart = rowners[rank];
2206a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2207a30f8f8cSSatish Balay 
2208a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22092fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   if (!rank) {
22111302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2214a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2216a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2217a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2218a30f8f8cSSatish Balay   } else {
2219a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay   }
2221a30f8f8cSSatish Balay 
22220222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2223a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22241302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22251302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2226a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2227a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2228a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2229a30f8f8cSSatish Balay       }
2230a30f8f8cSSatish Balay     }
2231a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay 
2233a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2234a30f8f8cSSatish Balay     maxnz = 0;
2235a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2236a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2237a30f8f8cSSatish Balay     }
22381302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2239a30f8f8cSSatish Balay 
2240a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2241a30f8f8cSSatish Balay     nz     = procsnz[0];
22421302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2243a30f8f8cSSatish Balay     mycols = ibuf;
2244a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2245a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2246a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2247a30f8f8cSSatish Balay 
2248a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2249a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2250a30f8f8cSSatish Balay       nz   = procsnz[i];
2251a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2252a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2253a30f8f8cSSatish Balay     }
2254a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2255a30f8f8cSSatish Balay     if (size != 1) {
2256a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2257a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2259a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2260a30f8f8cSSatish Balay     }
2261a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22620222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2263a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2264a30f8f8cSSatish Balay     nz = 0;
2265a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2266a30f8f8cSSatish Balay       nz += locrowlens[i];
2267a30f8f8cSSatish Balay     }
22681302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2269a30f8f8cSSatish Balay     mycols = ibuf;
2270a30f8f8cSSatish Balay     /* receive message of column indices*/
2271a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2272a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
227329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2274a30f8f8cSSatish Balay   }
2275a30f8f8cSSatish Balay 
2276a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22771302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2278a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22791302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22801302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2281a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2282a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2283a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2284a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2285a30f8f8cSSatish Balay     dcount  = 0;
2286a30f8f8cSSatish Balay     odcount = 0;
2287a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2288a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2289a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22900222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2291a30f8f8cSSatish Balay         if (!mask[tmp]) {
2292a30f8f8cSSatish Balay           mask[tmp] = 1;
22930222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22940222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2295a30f8f8cSSatish Balay         }
2296a30f8f8cSSatish Balay       }
2297a30f8f8cSSatish Balay       rowcount++;
2298a30f8f8cSSatish Balay     }
2299a30f8f8cSSatish Balay 
23000222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23010222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2304a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2305a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2306a30f8f8cSSatish Balay   }
2307a30f8f8cSSatish Balay 
2308a30f8f8cSSatish Balay   /* create our matrix */
2309f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2310f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
231122191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
231222191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2313273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2314a30f8f8cSSatish Balay 
2315a30f8f8cSSatish Balay   if (!rank) {
231687828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2317a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2318a30f8f8cSSatish Balay     nz = procsnz[0];
2319a30f8f8cSSatish Balay     vals = buf;
2320a30f8f8cSSatish Balay     mycols = ibuf;
2321a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2322a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2323a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2324a30f8f8cSSatish Balay 
2325a30f8f8cSSatish Balay     /* insert into matrix */
2326a30f8f8cSSatish Balay     jj      = rstart*bs;
2327a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23287e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2329a30f8f8cSSatish Balay       mycols += locrowlens[i];
2330a30f8f8cSSatish Balay       vals   += locrowlens[i];
2331a30f8f8cSSatish Balay       jj++;
2332a30f8f8cSSatish Balay     }
23337e06b45fSHong Zhang 
2334a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2335a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2336a30f8f8cSSatish Balay       nz   = procsnz[i];
2337a30f8f8cSSatish Balay       vals = buf;
2338a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2339a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2340a30f8f8cSSatish Balay     }
2341a30f8f8cSSatish Balay     /* the last proc */
2342a30f8f8cSSatish Balay     if (size != 1){
2343a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2344a30f8f8cSSatish Balay       vals = buf;
2345a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2346a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2347a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2348a30f8f8cSSatish Balay     }
2349a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23507e06b45fSHong Zhang 
2351a30f8f8cSSatish Balay   } else {
2352a30f8f8cSSatish Balay     /* receive numeric values */
235387828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2354a30f8f8cSSatish Balay 
2355a30f8f8cSSatish Balay     /* receive message of values*/
2356a30f8f8cSSatish Balay     vals   = buf;
2357a30f8f8cSSatish Balay     mycols = ibuf;
2358a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2359a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
236029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2361a30f8f8cSSatish Balay 
2362a30f8f8cSSatish Balay     /* insert into matrix */
2363a30f8f8cSSatish Balay     jj      = rstart*bs;
2364a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2365a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay       mycols += locrowlens[i];
2367a30f8f8cSSatish Balay       vals   += locrowlens[i];
2368a30f8f8cSSatish Balay       jj++;
2369a30f8f8cSSatish Balay     }
2370a30f8f8cSSatish Balay   }
23717e06b45fSHong Zhang 
2372a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2373a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2374a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2375a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2376a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2377a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2378a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2379a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238022191285SKris Buschelman   *newmat = A;
2381a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2382a30f8f8cSSatish Balay }
2383a30f8f8cSSatish Balay 
23844a2ae208SSatish Balay #undef __FUNCT__
23854a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2386dcf5cc72SBarry Smith /*XXXXX@
2387a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2388a30f8f8cSSatish Balay 
2389a30f8f8cSSatish Balay    Input Parameters:
2390a30f8f8cSSatish Balay .  mat  - the matrix
2391a30f8f8cSSatish Balay .  fact - factor
2392a30f8f8cSSatish Balay 
2393a30f8f8cSSatish Balay    Collective on Mat
2394a30f8f8cSSatish Balay 
2395a30f8f8cSSatish Balay    Level: advanced
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay   Notes:
2398a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2399a30f8f8cSSatish Balay 
2400a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2401a30f8f8cSSatish Balay 
2402a30f8f8cSSatish Balay .seealso: MatSetOption()
2403dcf5cc72SBarry Smith @XXXXX*/
2404dcf5cc72SBarry Smith 
240524d5174aSHong Zhang 
24064a2ae208SSatish Balay #undef __FUNCT__
24074a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2408dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
240924d5174aSHong Zhang {
241024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2411f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2412ca54ac64SHong Zhang   PetscReal      atmp;
241387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2414dfbe8321SBarry Smith   PetscErrorCode ierr;
24151302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24161302d50aSBarry Smith   PetscMPIInt    rank,size;
24171302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
241887828ca2SBarry Smith   PetscScalar    *va;
24198a1c53f2SBarry Smith   MatScalar      *ba;
2420f4c0e9e4SHong Zhang   MPI_Status     stat;
242124d5174aSHong Zhang 
242224d5174aSHong Zhang   PetscFunctionBegin;
2423d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
24241ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2425f4c0e9e4SHong Zhang 
242656faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
242756faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2428f4c0e9e4SHong Zhang 
2429899cda47SBarry Smith   bs   = A->rmap.bs;
2430f4c0e9e4SHong Zhang   mbs  = a->mbs;
2431f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2432f4c0e9e4SHong Zhang   ba   = b->a;
2433f4c0e9e4SHong Zhang   bi   = b->i;
2434f4c0e9e4SHong Zhang   bj   = b->j;
2435f4c0e9e4SHong Zhang 
2436f4c0e9e4SHong Zhang   /* find ownerships */
2437899cda47SBarry Smith   rowners_bs = A->rmap.range;
2438f4c0e9e4SHong Zhang 
2439f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
244082502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2441ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2442f4c0e9e4SHong Zhang 
2443f4c0e9e4SHong Zhang   /* row_max for B */
2444b8475685SHong Zhang   if (rank != size-1){
2445f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2446f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2447f4c0e9e4SHong Zhang       brow  = bs*i;
2448f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2449f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2450f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2451ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
245204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2453f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2454f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2455ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2456ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2457f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2458f4c0e9e4SHong Zhang           }
2459f4c0e9e4SHong Zhang         }
2460f4c0e9e4SHong Zhang         bj++;
2461f4c0e9e4SHong Zhang       }
2462f4c0e9e4SHong Zhang     }
2463f4c0e9e4SHong Zhang 
2464f4c0e9e4SHong Zhang     /* send values to its owners */
2465f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2466f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2467ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
246856faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2469ca54ac64SHong Zhang     }
2470f4c0e9e4SHong Zhang   }
2471f4c0e9e4SHong Zhang 
2472f4c0e9e4SHong Zhang   /* receive values */
2473ca54ac64SHong Zhang   if (rank){
2474f4c0e9e4SHong Zhang     rvalues = work;
2475ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2476f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
247756faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2478f4c0e9e4SHong Zhang       /* process values */
2479f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2480ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2481f4c0e9e4SHong Zhang       }
2482f4c0e9e4SHong Zhang     }
2483ca54ac64SHong Zhang   }
2484f4c0e9e4SHong Zhang 
24851ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2486ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
248724d5174aSHong Zhang   PetscFunctionReturn(0);
248824d5174aSHong Zhang }
24892798e883SHong Zhang 
24902798e883SHong Zhang #undef __FUNCT__
24912798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24921302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24932798e883SHong Zhang {
24942798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2495dfbe8321SBarry Smith   PetscErrorCode ierr;
2496899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2497efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2498ffe4fb16SHong Zhang   Vec            bb1;
2499ffe4fb16SHong Zhang 
2500ffe4fb16SHong Zhang   PetscFunctionBegin;
250177431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2502ffe4fb16SHong Zhang   if (bs > 1)
2503ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2504ffe4fb16SHong Zhang 
2505ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2506ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2507ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2508ffe4fb16SHong Zhang       its--;
2509ffe4fb16SHong Zhang     }
2510ffe4fb16SHong Zhang 
2511ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2512ffe4fb16SHong Zhang     while (its--){
2513ffe4fb16SHong Zhang 
2514ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2515ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2516ffe4fb16SHong Zhang 
2517ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25181ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25191ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2520ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25211ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2522ffe4fb16SHong Zhang 
2523efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2524ffe4fb16SHong Zhang 
2525ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25261ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25271ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2528ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25291ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang 
2531ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25322dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang 
2534ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
25351ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25361ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2538ffe4fb16SHong Zhang 
2539ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2540ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2541ffe4fb16SHong Zhang 
2542ffe4fb16SHong Zhang       /* local diagonal sweep */
2543ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2544ffe4fb16SHong Zhang     }
2545ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2546ffe4fb16SHong Zhang   } else {
2547ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2548ffe4fb16SHong Zhang   }
2549ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2550ffe4fb16SHong Zhang }
2551ffe4fb16SHong Zhang 
2552ffe4fb16SHong Zhang #undef __FUNCT__
2553ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25541302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2555ffe4fb16SHong Zhang {
2556ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2557dfbe8321SBarry Smith   PetscErrorCode ierr;
25582798e883SHong Zhang   Vec            lvec1,bb1;
25592798e883SHong Zhang 
25602798e883SHong Zhang   PetscFunctionBegin;
256177431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2562899cda47SBarry Smith   if (matin->rmap.bs > 1)
25632798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25642798e883SHong Zhang 
2565c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25662798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2567bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25682798e883SHong Zhang       its--;
25692798e883SHong Zhang     }
25702798e883SHong Zhang 
25712798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25722798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25732798e883SHong Zhang     while (its--){
25742798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25752798e883SHong Zhang 
25762798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25772798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2578efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25792798e883SHong Zhang 
25802798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25812798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25822798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25832798e883SHong Zhang 
25842798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2585efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25862798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25872798e883SHong Zhang 
25882798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25892798e883SHong Zhang 
2590c14dc6b6SHong Zhang       /* diagonal sweep */
2591bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25922798e883SHong Zhang     }
25932798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25942798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2595c14dc6b6SHong Zhang   } else {
2596c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2597c14dc6b6SHong Zhang   }
25982798e883SHong Zhang   PetscFunctionReturn(0);
25992798e883SHong Zhang }
26002798e883SHong Zhang 
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