xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 8f46ffca725d709c802a056bffe944fc7c220922)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat);
1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec);
2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
226214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
236214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
246214f412SHong Zhang #endif
25a30f8f8cSSatish Balay 
264a2ae208SSatish Balay #undef __FUNCT__
274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
287087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
29a30f8f8cSSatish Balay {
30f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
31dfbe8321SBarry Smith   PetscErrorCode ierr;
32a30f8f8cSSatish Balay 
33a30f8f8cSSatish Balay   PetscFunctionBegin;
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
36a30f8f8cSSatish Balay   PetscFunctionReturn(0);
37a30f8f8cSSatish Balay }
38a30f8f8cSSatish Balay 
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
417087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
53a30f8f8cSSatish Balay   { \
54a30f8f8cSSatish Balay  \
55a30f8f8cSSatish Balay     brow = row/bs;  \
56a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
57a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
58a30f8f8cSSatish Balay     bcol = col/bs; \
59a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
60a30f8f8cSSatish Balay     low  = 0; high = nrow; \
61a30f8f8cSSatish Balay     while (high-low > 3) { \
62a30f8f8cSSatish Balay       t = (low+high)/2; \
63a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
64a30f8f8cSSatish Balay       else              low  = t; \
65a30f8f8cSSatish Balay     } \
66a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
67a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
68a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
69a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
70a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
71a30f8f8cSSatish Balay         else                    *bap  = value;  \
72a30f8f8cSSatish Balay         goto a_noinsert; \
73a30f8f8cSSatish Balay       } \
74a30f8f8cSSatish Balay     } \
75a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
76e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
77fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
78a30f8f8cSSatish Balay     N = nrow++ - 1;  \
79a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
80a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
81a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
82a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
83a30f8f8cSSatish Balay     } \
84a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
85a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
86a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
87e56f5c9eSBarry Smith     A->nonzerostate++;\
88a30f8f8cSSatish Balay a_noinsert:; \
89a30f8f8cSSatish Balay     ailen[brow] = nrow; \
90a30f8f8cSSatish Balay   }
91e5e170daSBarry Smith 
92a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
93a30f8f8cSSatish Balay   { \
94a30f8f8cSSatish Balay     brow = row/bs;  \
95a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
96a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
97a30f8f8cSSatish Balay     bcol = col/bs; \
98a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
99a30f8f8cSSatish Balay     low  = 0; high = nrow; \
100a30f8f8cSSatish Balay     while (high-low > 3) { \
101a30f8f8cSSatish Balay       t = (low+high)/2; \
102a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
103a30f8f8cSSatish Balay       else              low  = t; \
104a30f8f8cSSatish Balay     } \
105a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
106a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
107a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
108a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
109a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
110a30f8f8cSSatish Balay         else                    *bap  = value;  \
111a30f8f8cSSatish Balay         goto b_noinsert; \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay     } \
114a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
115e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
116fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
117a30f8f8cSSatish Balay     N = nrow++ - 1;  \
118a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
119a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
120a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
121a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
122a30f8f8cSSatish Balay     } \
123a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
124a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
125a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
126e56f5c9eSBarry Smith     B->nonzerostate++;\
127a30f8f8cSSatish Balay b_noinsert:; \
128a30f8f8cSSatish Balay     bilen[brow] = nrow; \
129a30f8f8cSSatish Balay   }
130a30f8f8cSSatish Balay 
131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
132a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
133a30f8f8cSSatish Balay */
1344a2ae208SSatish Balay #undef __FUNCT__
135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
137a30f8f8cSSatish Balay {
138a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
139a30f8f8cSSatish Balay   MatScalar      value;
140ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
1421302d50aSBarry Smith   PetscInt       i,j,row,col;
143d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
144d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
145d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
146a30f8f8cSSatish Balay 
147a30f8f8cSSatish Balay   /* Some Variables required in the macro */
148a30f8f8cSSatish Balay   Mat          A     = baij->A;
149a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
1501302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
151a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
152a30f8f8cSSatish Balay 
153a30f8f8cSSatish Balay   Mat         B     = baij->B;
154a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
1551302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
156a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
157a30f8f8cSSatish Balay 
1581302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
1591302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
160a30f8f8cSSatish Balay   MatScalar *ap,*bap;
161a30f8f8cSSatish Balay 
162a30f8f8cSSatish Balay   /* for stash */
1630298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
1640298fd71SBarry Smith   MatScalar *v_loc = NULL;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (!baij->donotstash) {
16859ffdab8SBarry Smith     if (n > baij->n_loc) {
16959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
171785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
172785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
17326fbe8dcSKarl Rupp 
17459ffdab8SBarry Smith       baij->n_loc = n;
17559ffdab8SBarry Smith     }
17659ffdab8SBarry Smith     in_loc = baij->in_loc;
17759ffdab8SBarry Smith     v_loc  = baij->v_loc;
178a30f8f8cSSatish Balay   }
179a30f8f8cSSatish Balay 
180a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
181a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
183e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
184a30f8f8cSSatish Balay #endif
185a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
186a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
187a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18801b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
18901b2bd88SHong Zhang           if (a->ignore_ltriangular) {
19001b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19126fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19201b2bd88SHong Zhang         }
193a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
194a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
195a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
196a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
197db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
198db4deed7SKarl Rupp           else             value = v[i+j*m];
199a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
200a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
201a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
203cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
204a30f8f8cSSatish Balay #endif
205a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
206a30f8f8cSSatish Balay           if (mat->was_assembled) {
207a30f8f8cSSatish Balay             if (!baij->colmap) {
208ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
209a30f8f8cSSatish Balay             }
210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
211a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21271730473SSatish Balay             col  = col - 1;
213a30f8f8cSSatish Balay #else
21471730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
215a30f8f8cSSatish Balay #endif
216a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
217ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
218a30f8f8cSSatish Balay               col  =  in[j];
219a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
220a30f8f8cSSatish Balay               B    = baij->B;
221a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
222a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
223a30f8f8cSSatish Balay               ba   = b->a;
22471730473SSatish Balay             } else col += in[j]%bs;
225a30f8f8cSSatish Balay           } else col = in[j];
226db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
227db4deed7SKarl Rupp           else             value = v[i+j*m];
228a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
229a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
230a30f8f8cSSatish Balay         }
231a30f8f8cSSatish Balay       }
232a30f8f8cSSatish Balay     } else {  /* off processor entry */
2334cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
2355080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
236a30f8f8cSSatish Balay         n_loc          = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
261ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if (!barray) {
269785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
281e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286f3f98c53SJed Brown         if (im[i] > in[j]) {
287f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++ = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
31226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
3330880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
339ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col  = in[j];
3410880e062SHong Zhang             }
34226fbe8dcSKarl Rupp           } else col = in[j];
343e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3440880e062SHong Zhang         }
3450880e062SHong Zhang       }
3460880e062SHong Zhang     } else {
3474cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
3480880e062SHong Zhang       if (!baij->donotstash) {
3490880e062SHong Zhang         if (roworiented) {
3500880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3510880e062SHong Zhang         } else {
3520880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         }
3540880e062SHong Zhang       }
3550880e062SHong Zhang     }
3560880e062SHong Zhang   }
3570880e062SHong Zhang   PetscFunctionReturn(0);
358a30f8f8cSSatish Balay }
359a30f8f8cSSatish Balay 
3604a2ae208SSatish Balay #undef __FUNCT__
3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
363a30f8f8cSSatish Balay {
364f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3656849ba73SBarry Smith   PetscErrorCode ierr;
366d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
367d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
368a30f8f8cSSatish Balay 
369a30f8f8cSSatish Balay   PetscFunctionBegin;
370a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
371e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
372e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
373a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
374a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
375a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
376e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
377e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
378a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
379a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
380c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
381a30f8f8cSSatish Balay         } else {
382a30f8f8cSSatish Balay           if (!baij->colmap) {
383ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           }
385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
387a30f8f8cSSatish Balay           data--;
388a30f8f8cSSatish Balay #else
389a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
392a30f8f8cSSatish Balay           else {
393a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
394e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
395a30f8f8cSSatish Balay           }
396a30f8f8cSSatish Balay         }
397a30f8f8cSSatish Balay       }
398f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
399a30f8f8cSSatish Balay   }
400a30f8f8cSSatish Balay   PetscFunctionReturn(0);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
4034a2ae208SSatish Balay #undef __FUNCT__
4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
406a30f8f8cSSatish Balay {
407a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
408dfbe8321SBarry Smith   PetscErrorCode ierr;
409a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
410a30f8f8cSSatish Balay 
411a30f8f8cSSatish Balay   PetscFunctionBegin;
412a30f8f8cSSatish Balay   if (baij->size == 1) {
413a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
414a30f8f8cSSatish Balay   } else {
415a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
416785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
419a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
421ce94432eSBarry Smith       ierr    = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4228f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
423a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
4240b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4250b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4260b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4270b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
428899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
429d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4300b8dc8d2SHong Zhang       MatScalar    *v;
4310b8dc8d2SHong Zhang 
432dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
433d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4430b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
4600b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467ce94432eSBarry Smith       ierr  = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
47274ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
473f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
474a30f8f8cSSatish Balay   }
475a30f8f8cSSatish Balay   PetscFunctionReturn(0);
476a30f8f8cSSatish Balay }
477a30f8f8cSSatish Balay 
4784a2ae208SSatish Balay #undef __FUNCT__
4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
481a30f8f8cSSatish Balay {
482a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
483dfbe8321SBarry Smith   PetscErrorCode ierr;
4841302d50aSBarry Smith   PetscInt       nstash,reallocs;
485a30f8f8cSSatish Balay   InsertMode     addv;
486a30f8f8cSSatish Balay 
487a30f8f8cSSatish Balay   PetscFunctionBegin;
48826fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
489a30f8f8cSSatish Balay 
490a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
491ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
492ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
493a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
494a30f8f8cSSatish Balay 
495d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
4961e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
497a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
4981e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
499a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5001e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
501a30f8f8cSSatish Balay   PetscFunctionReturn(0);
502a30f8f8cSSatish Balay }
503a30f8f8cSSatish Balay 
5044a2ae208SSatish Balay #undef __FUNCT__
5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
507a30f8f8cSSatish Balay {
508a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
509a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
5106849ba73SBarry Smith   PetscErrorCode ierr;
51113f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
512e44c0bd4SBarry Smith   PetscInt       *row,*col;
513ace3abfcSBarry Smith   PetscBool      other_disassembled;
51413f74950SBarry Smith   PetscMPIInt    n;
515ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
516a30f8f8cSSatish Balay   MatScalar      *val;
517a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
518a30f8f8cSSatish Balay 
51991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
520a30f8f8cSSatish Balay   PetscFunctionBegin;
5214cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
522a30f8f8cSSatish Balay     while (1) {
523a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
524a30f8f8cSSatish Balay       if (!flg) break;
525a30f8f8cSSatish Balay 
526a30f8f8cSSatish Balay       for (i=0; i<n;) {
527a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
52826fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
52926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
53026fbe8dcSKarl Rupp         }
531a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
532a30f8f8cSSatish Balay         else       ncols = n-i;
533a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
534dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
535a30f8f8cSSatish Balay         i    = j;
536a30f8f8cSSatish Balay       }
537a30f8f8cSSatish Balay     }
538a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
539a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
540a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
541a30f8f8cSSatish Balay        restore the original flags */
542a30f8f8cSSatish Balay     r1 = baij->roworiented;
543a30f8f8cSSatish Balay     r2 = a->roworiented;
54491c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
54526fbe8dcSKarl Rupp 
546a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
547a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
54826fbe8dcSKarl Rupp 
54991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
550a30f8f8cSSatish Balay     while (1) {
551a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
552a30f8f8cSSatish Balay       if (!flg) break;
553a30f8f8cSSatish Balay 
554a30f8f8cSSatish Balay       for (i=0; i<n;) {
555a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
55626fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
55726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
55826fbe8dcSKarl Rupp         }
559a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
560a30f8f8cSSatish Balay         else       ncols = n-i;
561dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
562a30f8f8cSSatish Balay         i    = j;
563a30f8f8cSSatish Balay       }
564a30f8f8cSSatish Balay     }
565a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
56626fbe8dcSKarl Rupp 
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56926fbe8dcSKarl Rupp 
57091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
571a30f8f8cSSatish Balay   }
572a30f8f8cSSatish Balay 
573a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
575a30f8f8cSSatish Balay 
576a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
577a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
578a30f8f8cSSatish Balay   /*
579a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
580a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
581a30f8f8cSSatish Balay   */
582a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
583ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
584a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
585ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
586a30f8f8cSSatish Balay     }
587a30f8f8cSSatish Balay   }
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
591a30f8f8cSSatish Balay   }
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
59574ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
59626fbe8dcSKarl Rupp 
597a30f8f8cSSatish Balay   baij->rowvalues = 0;
5984f9cfa9eSBarry Smith 
5994f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
6004f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
601e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
60209e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
603e56f5c9eSBarry Smith   }
604a30f8f8cSSatish Balay   PetscFunctionReturn(0);
605a30f8f8cSSatish Balay }
606a30f8f8cSSatish Balay 
6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer);
608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6099804daf3SBarry Smith #include <petscdraw.h>
6104a2ae208SSatish Balay #undef __FUNCT__
6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
613a30f8f8cSSatish Balay {
614a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
615dfbe8321SBarry Smith   PetscErrorCode    ierr;
616d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
6177da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
618ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
619b0a32e0cSBarry Smith   PetscViewer       sviewer;
620f3ef73ceSBarry Smith   PetscViewerFormat format;
621a30f8f8cSSatish Balay 
622a30f8f8cSSatish Balay   PetscFunctionBegin;
623251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
624251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62532077d6dSBarry Smith   if (iascii) {
626b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
627456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
628a30f8f8cSSatish Balay       MatInfo info;
629ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
630a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6317b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6327b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
634e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
635a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
636e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
637b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6387b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
63907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
640a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
641a30f8f8cSSatish Balay       PetscFunctionReturn(0);
642fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
64377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
644a30f8f8cSSatish Balay       PetscFunctionReturn(0);
645c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
646c1490034SHong Zhang       PetscFunctionReturn(0);
647a30f8f8cSSatish Balay     }
648a30f8f8cSSatish Balay   }
649a30f8f8cSSatish Balay 
650a30f8f8cSSatish Balay   if (isdraw) {
651b0a32e0cSBarry Smith     PetscDraw draw;
652ace3abfcSBarry Smith     PetscBool isnull;
653b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
654b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
655a30f8f8cSSatish Balay   }
656a30f8f8cSSatish Balay 
6577da1fb6eSBarry Smith   {
658a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
659a30f8f8cSSatish Balay     Mat          A;
66065d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
66165d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
662d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
663a30f8f8cSSatish Balay     MatScalar    *a;
6643e219373SBarry Smith     const char   *matname;
665a30f8f8cSSatish Balay 
666f204ca49SKris Buschelman     /* Should this be the same type as mat? */
667ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
668a30f8f8cSSatish Balay     if (!rank) {
669f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
670a30f8f8cSSatish Balay     } else {
671f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
672a30f8f8cSSatish Balay     }
673f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
6740298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
6752b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
6763bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay     /* copy over the A part */
67965d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
680a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
681785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
682a30f8f8cSSatish Balay 
683a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
684e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
68526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
686a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
687e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
688a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
689dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
69026fbe8dcSKarl Rupp           col++;
69126fbe8dcSKarl Rupp           a += bs;
692a30f8f8cSSatish Balay         }
693a30f8f8cSSatish Balay       }
694a30f8f8cSSatish Balay     }
695a30f8f8cSSatish Balay     /* copy over the B part */
69665d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69765d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
698a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
699e9f7bc9eSHong Zhang 
700e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
70126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
702a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
703a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
704a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
705799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
70626fbe8dcSKarl Rupp           col++;
70726fbe8dcSKarl Rupp           a += bs;
708a30f8f8cSSatish Balay         }
709a30f8f8cSSatish Balay       }
710a30f8f8cSSatish Balay     }
711a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
712a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
714a30f8f8cSSatish Balay     /*
715a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
716b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
717a30f8f8cSSatish Balay     */
718b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
719ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
7203e219373SBarry Smith     if (!rank) {
721ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
7227da1fb6eSBarry Smith       ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
723a30f8f8cSSatish Balay     }
724b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
7256bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
726a30f8f8cSSatish Balay   }
727a30f8f8cSSatish Balay   PetscFunctionReturn(0);
728a30f8f8cSSatish Balay }
729a30f8f8cSSatish Balay 
7304a2ae208SSatish Balay #undef __FUNCT__
7314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
732dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
733a30f8f8cSSatish Balay {
734dfbe8321SBarry Smith   PetscErrorCode ierr;
735ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
736a30f8f8cSSatish Balay 
737a30f8f8cSSatish Balay   PetscFunctionBegin;
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
739251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
740251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
741251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
74232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
743a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
744a30f8f8cSSatish Balay   }
745a30f8f8cSSatish Balay   PetscFunctionReturn(0);
746a30f8f8cSSatish Balay }
747a30f8f8cSSatish Balay 
7484a2ae208SSatish Balay #undef __FUNCT__
7494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
750dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
751a30f8f8cSSatish Balay {
752a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
753dfbe8321SBarry Smith   PetscErrorCode ierr;
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay   PetscFunctionBegin;
756a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
757d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
758a30f8f8cSSatish Balay #endif
759a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
7616bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
7626bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
763a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
7646bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
765a30f8f8cSSatish Balay #else
76605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
767a30f8f8cSSatish Balay #endif
76805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
7696bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
7706bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
7716bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
7726bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
7736bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
7746bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
7756bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
7766bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
7775755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77905b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
7806bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
7816bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
7826bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
783ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
78405b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
785a30f8f8cSSatish Balay #endif
78659ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78759ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
788899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
789bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
790901853e0SKris Buschelman 
791dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
792bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
793bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
794bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
795bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
796bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr);
7976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
7986214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
7996214f412SHong Zhang #endif
800a30f8f8cSSatish Balay   PetscFunctionReturn(0);
801a30f8f8cSSatish Balay }
802a30f8f8cSSatish Balay 
8034a2ae208SSatish Balay #undef __FUNCT__
804547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
805547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
806547795f9SHong Zhang {
807547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
808547795f9SHong Zhang   PetscErrorCode ierr;
809547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
810547795f9SHong Zhang   PetscScalar    *x,*from;
811547795f9SHong Zhang 
812547795f9SHong Zhang   PetscFunctionBegin;
813547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
814e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
815547795f9SHong Zhang 
816547795f9SHong Zhang   /* diagonal part */
817547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
818547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   /* subdiagonal part */
821547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
822547795f9SHong Zhang 
823547795f9SHong Zhang   /* copy x into the vec slvec0 */
824547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
826547795f9SHong Zhang 
827547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
828547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
829547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
830547795f9SHong Zhang 
831547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
832547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
833547795f9SHong Zhang   /* supperdiagonal part */
834547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
835547795f9SHong Zhang   PetscFunctionReturn(0);
836547795f9SHong Zhang }
837547795f9SHong Zhang 
838547795f9SHong Zhang #undef __FUNCT__
839a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
840dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
841a9d4b620SHong Zhang {
842a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
843dfbe8321SBarry Smith   PetscErrorCode    ierr;
844d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
845d9ca1df4SBarry Smith   PetscScalar       *from;
846d9ca1df4SBarry Smith   const PetscScalar *x;
847a9d4b620SHong Zhang 
848a9d4b620SHong Zhang   PetscFunctionBegin;
849a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
850e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
851a9d4b620SHong Zhang 
852a9d4b620SHong Zhang   /* diagonal part */
853a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
854fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
855a9d4b620SHong Zhang 
856a9d4b620SHong Zhang   /* subdiagonal part */
857a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
858fc165ae2SBarry Smith 
859a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8601ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
861d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
862a9d4b620SHong Zhang 
863fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
864fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
865d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
866fc165ae2SBarry Smith 
867fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
868ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
869a9d4b620SHong Zhang   /* supperdiagonal part */
870a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
871a9d4b620SHong Zhang   PetscFunctionReturn(0);
872a9d4b620SHong Zhang }
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang #undef __FUNCT__
87540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
876dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
877a30f8f8cSSatish Balay {
878a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
879dfbe8321SBarry Smith   PetscErrorCode ierr;
8801302d50aSBarry Smith   PetscInt       nt;
881a30f8f8cSSatish Balay 
882a30f8f8cSSatish Balay   PetscFunctionBegin;
883a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
884e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
885e7e72b3dSBarry Smith 
886a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
887e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
88865d70643SHong Zhang 
889ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
890b941877fSHong Zhang   /* do diagonal part */
891b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
892b941877fSHong Zhang   /* do supperdiagonal part */
893ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
895b941877fSHong Zhang   /* do subdiagonal part */
896b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
897ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
898ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
899a30f8f8cSSatish Balay   PetscFunctionReturn(0);
900a30f8f8cSSatish Balay }
901a30f8f8cSSatish Balay 
9024a2ae208SSatish Balay #undef __FUNCT__
9034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
904dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
905a30f8f8cSSatish Balay {
906de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
907dfbe8321SBarry Smith   PetscErrorCode    ierr;
908d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
909d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
910d9ca1df4SBarry Smith   const PetscScalar *x;
911a9d4b620SHong Zhang 
912a9d4b620SHong Zhang   PetscFunctionBegin;
913a9d4b620SHong Zhang   /*
914ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
9150ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
916a9d4b620SHong Zhang   */
917a9d4b620SHong Zhang   /* diagonal part */
918a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9192dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
920a9d4b620SHong Zhang 
921a9d4b620SHong Zhang   /* subdiagonal part */
922a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
923a9d4b620SHong Zhang 
924a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9251ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
926d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
927a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9281ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
929a9d4b620SHong Zhang 
930ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
931d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
932ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
933a9d4b620SHong Zhang 
934a9d4b620SHong Zhang   /* supperdiagonal part */
935a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
936a9d4b620SHong Zhang   PetscFunctionReturn(0);
937a9d4b620SHong Zhang }
938a9d4b620SHong Zhang 
939a9d4b620SHong Zhang #undef __FUNCT__
940a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
941dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
942a9d4b620SHong Zhang {
943a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
944dfbe8321SBarry Smith   PetscErrorCode ierr;
945a30f8f8cSSatish Balay 
946a30f8f8cSSatish Balay   PetscFunctionBegin;
947ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
948b941877fSHong Zhang   /* do diagonal part */
949b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
950b941877fSHong Zhang   /* do supperdiagonal part */
951ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
952de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
953de8b6608SHong Zhang 
954b941877fSHong Zhang   /* do subdiagonal part */
955a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
956ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
957ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
958a30f8f8cSSatish Balay   PetscFunctionReturn(0);
959a30f8f8cSSatish Balay }
960a30f8f8cSSatish Balay 
961a30f8f8cSSatish Balay /*
962a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
963a30f8f8cSSatish Balay    diagonal block
964a30f8f8cSSatish Balay */
9654a2ae208SSatish Balay #undef __FUNCT__
9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
968a30f8f8cSSatish Balay {
969a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
970dfbe8321SBarry Smith   PetscErrorCode ierr;
971a30f8f8cSSatish Balay 
972a30f8f8cSSatish Balay   PetscFunctionBegin;
973e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
974a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
975a30f8f8cSSatish Balay   PetscFunctionReturn(0);
976a30f8f8cSSatish Balay }
977a30f8f8cSSatish Balay 
9784a2ae208SSatish Balay #undef __FUNCT__
9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
981a30f8f8cSSatish Balay {
982a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
983dfbe8321SBarry Smith   PetscErrorCode ierr;
984a30f8f8cSSatish Balay 
985a30f8f8cSSatish Balay   PetscFunctionBegin;
986f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
987f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
989a30f8f8cSSatish Balay }
990a30f8f8cSSatish Balay 
9914a2ae208SSatish Balay #undef __FUNCT__
9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
994a30f8f8cSSatish Balay {
995d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
996d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
997d0d4cfc2SHong Zhang   PetscErrorCode ierr;
998d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
999d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1000899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1001d0d4cfc2SHong Zhang 
1002a30f8f8cSSatish Balay   PetscFunctionBegin;
1003e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1004d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1005d0d4cfc2SHong Zhang 
1006d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1007d0d4cfc2SHong Zhang     /*
1008d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1009d0d4cfc2SHong Zhang     */
1010d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1011d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1012d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1013d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1014d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
101526fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1016d0d4cfc2SHong Zhang     }
1017dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1018d0d4cfc2SHong Zhang   }
1019d0d4cfc2SHong Zhang 
1020e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1021d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1022d0d4cfc2SHong Zhang 
1023d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1024d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1025d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1026d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1027d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1028d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1029d0d4cfc2SHong Zhang 
1030d0d4cfc2SHong Zhang   cmap = mat->garray;
1031d0d4cfc2SHong Zhang   if (v  || idx) {
1032d0d4cfc2SHong Zhang     if (nztot) {
1033d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1034d0d4cfc2SHong Zhang       PetscInt imark = -1;
1035d0d4cfc2SHong Zhang       if (v) {
1036d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1037d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1038d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1039d0d4cfc2SHong Zhang           else break;
1040d0d4cfc2SHong Zhang         }
1041d0d4cfc2SHong Zhang         imark = i;
1042d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1043d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1044d0d4cfc2SHong Zhang       }
1045d0d4cfc2SHong Zhang       if (idx) {
1046d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1047d0d4cfc2SHong Zhang         if (imark > -1) {
1048d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1049d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1050d0d4cfc2SHong Zhang           }
1051d0d4cfc2SHong Zhang         } else {
1052d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
105326fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1054d0d4cfc2SHong Zhang             else break;
1055d0d4cfc2SHong Zhang           }
1056d0d4cfc2SHong Zhang           imark = i;
1057d0d4cfc2SHong Zhang         }
1058d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1059d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1060d0d4cfc2SHong Zhang       }
1061d0d4cfc2SHong Zhang     } else {
1062d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1063d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1064d0d4cfc2SHong Zhang     }
1065d0d4cfc2SHong Zhang   }
1066d0d4cfc2SHong Zhang   *nz  = nztot;
1067d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1068d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1069a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1070a30f8f8cSSatish Balay }
1071a30f8f8cSSatish Balay 
10724a2ae208SSatish Balay #undef __FUNCT__
10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1075a30f8f8cSSatish Balay {
1076a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1077a30f8f8cSSatish Balay 
1078a30f8f8cSSatish Balay   PetscFunctionBegin;
1079e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1080a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1081a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1082a30f8f8cSSatish Balay }
1083a30f8f8cSSatish Balay 
10844a2ae208SSatish Balay #undef __FUNCT__
1085d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1086d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1087d0d4cfc2SHong Zhang {
1088d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1089d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1090d0d4cfc2SHong Zhang 
1091d0d4cfc2SHong Zhang   PetscFunctionBegin;
1092d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1093d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1094d0d4cfc2SHong Zhang }
1095d0d4cfc2SHong Zhang #undef __FUNCT__
1096d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1097d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1098d0d4cfc2SHong Zhang {
1099d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1100d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1101d0d4cfc2SHong Zhang 
1102d0d4cfc2SHong Zhang   PetscFunctionBegin;
1103d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1104d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1105d0d4cfc2SHong Zhang }
1106d0d4cfc2SHong Zhang 
1107d0d4cfc2SHong Zhang #undef __FUNCT__
110899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111099cafbc1SBarry Smith {
111199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111299cafbc1SBarry Smith   PetscErrorCode ierr;
111399cafbc1SBarry Smith 
111499cafbc1SBarry Smith   PetscFunctionBegin;
111599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111799cafbc1SBarry Smith   PetscFunctionReturn(0);
111899cafbc1SBarry Smith }
111999cafbc1SBarry Smith 
112099cafbc1SBarry Smith #undef __FUNCT__
112199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112399cafbc1SBarry Smith {
112499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
112599cafbc1SBarry Smith   PetscErrorCode ierr;
112699cafbc1SBarry Smith 
112799cafbc1SBarry Smith   PetscFunctionBegin;
112899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113099cafbc1SBarry Smith   PetscFunctionReturn(0);
113199cafbc1SBarry Smith }
113299cafbc1SBarry Smith 
113399cafbc1SBarry Smith #undef __FUNCT__
1134*8f46ffcaSHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ"
1135*8f46ffcaSHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
1136*8f46ffcaSHong Zhang {
1137*8f46ffcaSHong Zhang   PetscErrorCode ierr;
1138*8f46ffcaSHong Zhang   IS             iscol_local;
1139*8f46ffcaSHong Zhang   PetscInt       csize;
1140*8f46ffcaSHong Zhang 
1141*8f46ffcaSHong Zhang   PetscFunctionBegin;
1142*8f46ffcaSHong Zhang   MPI_Comm    comm;
1143*8f46ffcaSHong Zhang   PetscMPIInt rank;
1144*8f46ffcaSHong Zhang   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
1145*8f46ffcaSHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1146*8f46ffcaSHong Zhang 
1147*8f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1148*8f46ffcaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
1149*8f46ffcaSHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1150*8f46ffcaSHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1151*8f46ffcaSHong Zhang   } else {
1152*8f46ffcaSHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1153*8f46ffcaSHong Zhang 
1154*8f46ffcaSHong Zhang     { /* check if isrow == iscol_local Note: isrow is distributed, but iscol_local is locally owned! */
1155*8f46ffcaSHong Zhang     PetscInt  sz1,sz2,*a1,*a2,i,j,k,nmatch;
1156*8f46ffcaSHong Zhang     const PetscInt *ptr1,*ptr2;
1157*8f46ffcaSHong Zhang     ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
1158*8f46ffcaSHong Zhang     ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
1159*8f46ffcaSHong Zhang     if (sz1 > sz2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
1160*8f46ffcaSHong Zhang 
1161*8f46ffcaSHong Zhang     ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
1162*8f46ffcaSHong Zhang     ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
1163*8f46ffcaSHong Zhang 
1164*8f46ffcaSHong Zhang     ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
1165*8f46ffcaSHong Zhang     ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1166*8f46ffcaSHong Zhang     ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
1167*8f46ffcaSHong Zhang     ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
1168*8f46ffcaSHong Zhang     ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
1169*8f46ffcaSHong Zhang     ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
1170*8f46ffcaSHong Zhang 
1171*8f46ffcaSHong Zhang     nmatch=0;
1172*8f46ffcaSHong Zhang     k = 0;
1173*8f46ffcaSHong Zhang     for (i=0; i<sz1; i++){
1174*8f46ffcaSHong Zhang       for (j=k; j<sz2; j++){
1175*8f46ffcaSHong Zhang         if (a1[i] == a2[j]) {
1176*8f46ffcaSHong Zhang           k = j; nmatch++;
1177*8f46ffcaSHong Zhang           if (rank == 1) printf("match %d\n",a2[j]);
1178*8f46ffcaSHong Zhang           break;
1179*8f46ffcaSHong Zhang         }
1180*8f46ffcaSHong Zhang       }
1181*8f46ffcaSHong Zhang     }
1182*8f46ffcaSHong Zhang     ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
1183*8f46ffcaSHong Zhang     ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
1184*8f46ffcaSHong Zhang     ierr = PetscFree(a1);CHKERRQ(ierr);
1185*8f46ffcaSHong Zhang     ierr = PetscFree(a2);CHKERRQ(ierr);
1186*8f46ffcaSHong Zhang     if (nmatch < sz1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
1187*8f46ffcaSHong Zhang     }
1188*8f46ffcaSHong Zhang   }
1189*8f46ffcaSHong Zhang 
1190*8f46ffcaSHong Zhang   /* now call MatGetSubMatrix_MPIBAIJ() */
1191*8f46ffcaSHong Zhang   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); //csize: global iscol size
1192*8f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
1193*8f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
1194*8f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
1195*8f46ffcaSHong Zhang   }
1196*8f46ffcaSHong Zhang   PetscFunctionReturn(0);
1197*8f46ffcaSHong Zhang }
1198*8f46ffcaSHong Zhang 
1199*8f46ffcaSHong Zhang #undef __FUNCT__
12004a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1201dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1202a30f8f8cSSatish Balay {
1203a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1204dfbe8321SBarry Smith   PetscErrorCode ierr;
1205a30f8f8cSSatish Balay 
1206a30f8f8cSSatish Balay   PetscFunctionBegin;
1207a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1208a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1209a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1210a30f8f8cSSatish Balay }
1211a30f8f8cSSatish Balay 
12124a2ae208SSatish Balay #undef __FUNCT__
12134a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1214dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1215a30f8f8cSSatish Balay {
1216a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1217a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1218dfbe8321SBarry Smith   PetscErrorCode ierr;
1219a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1220a30f8f8cSSatish Balay 
1221a30f8f8cSSatish Balay   PetscFunctionBegin;
1222d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
122326fbe8dcSKarl Rupp 
1224a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
122526fbe8dcSKarl Rupp 
1226a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1227a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
122826fbe8dcSKarl Rupp 
1229a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
123026fbe8dcSKarl Rupp 
1231a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1232a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1233a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1234a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1235a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1236a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1237a30f8f8cSSatish Balay     info->memory       = isend[3];
1238a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1239a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1240ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
124126fbe8dcSKarl Rupp 
1242a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1243a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1244a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1245a30f8f8cSSatish Balay     info->memory       = irecv[3];
1246a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1247a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1248ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
124926fbe8dcSKarl Rupp 
1250a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1251a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1252a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1253a30f8f8cSSatish Balay     info->memory       = irecv[3];
1254a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1255f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1256a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1257a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1258a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1259a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1260a30f8f8cSSatish Balay }
1261a30f8f8cSSatish Balay 
12624a2ae208SSatish Balay #undef __FUNCT__
12634a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1264ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1265a30f8f8cSSatish Balay {
1266a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1267d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1268dfbe8321SBarry Smith   PetscErrorCode ierr;
1269a30f8f8cSSatish Balay 
1270a30f8f8cSSatish Balay   PetscFunctionBegin;
1271e98b92d7SKris Buschelman   switch (op) {
1272512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1273e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
127428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1275a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1276e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12774e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12784e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1279e98b92d7SKris Buschelman     break;
1280e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12814e0d8c25SBarry Smith     a->roworiented = flg;
128226fbe8dcSKarl Rupp 
12834e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12844e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1285e98b92d7SKris Buschelman     break;
12864e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1287290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1288e98b92d7SKris Buschelman     break;
1289e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12904e0d8c25SBarry Smith     a->donotstash = flg;
1291e98b92d7SKris Buschelman     break;
1292e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12934e0d8c25SBarry Smith     a->ht_flag = flg;
1294e98b92d7SKris Buschelman     break;
12959a4540c5SBarry Smith   case MAT_HERMITIAN:
1296e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1297eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
129826fbe8dcSKarl Rupp 
1299547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1300eeffb40dSHong Zhang     break;
1301ffa07934SHong Zhang   case MAT_SPD:
1302ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1303ffa07934SHong Zhang     A->spd     = flg;
1304ffa07934SHong Zhang     if (flg) {
1305ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1306ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1307ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1308ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1309ffa07934SHong Zhang     }
1310ffa07934SHong Zhang     break;
131177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1312eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1313eeffb40dSHong Zhang     break;
131477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1315eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1316eeffb40dSHong Zhang     break;
13179a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1318e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1319290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
132077e54ba9SKris Buschelman     break;
1321d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
13224e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1323d0d4cfc2SHong Zhang     break;
1324d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
13254e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1326d0d4cfc2SHong Zhang     break;
1327d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
13284e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1329d0d4cfc2SHong Zhang     break;
1330e98b92d7SKris Buschelman   default:
1331e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1332a30f8f8cSSatish Balay   }
1333a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1334a30f8f8cSSatish Balay }
1335a30f8f8cSSatish Balay 
13364a2ae208SSatish Balay #undef __FUNCT__
13378115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1338fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1339a30f8f8cSSatish Balay {
1340dfbe8321SBarry Smith   PetscErrorCode ierr;
13416e111a19SKarl Rupp 
1342a30f8f8cSSatish Balay   PetscFunctionBegin;
1343815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1344999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1345fc4dec0aSBarry Smith   }
13468115998fSBarry Smith   PetscFunctionReturn(0);
1347a30f8f8cSSatish Balay }
1348a30f8f8cSSatish Balay 
13494a2ae208SSatish Balay #undef __FUNCT__
13504a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1351dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1352a30f8f8cSSatish Balay {
1353a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1354a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1355dfbe8321SBarry Smith   PetscErrorCode ierr;
13565e90f9d9SHong Zhang   PetscInt       nv,m,n;
1357ace3abfcSBarry Smith   PetscBool      flg;
1358a30f8f8cSSatish Balay 
1359a30f8f8cSSatish Balay   PetscFunctionBegin;
1360a30f8f8cSSatish Balay   if (ll != rr) {
1361b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1362e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1363a30f8f8cSSatish Balay   }
1364b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1365b3bf805bSHong Zhang 
13665e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1367e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1368b3bf805bSHong Zhang 
13695e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1370e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13715e90f9d9SHong Zhang 
1372ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13735e90f9d9SHong Zhang 
13745e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
13750298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
13765e90f9d9SHong Zhang 
13775e90f9d9SHong Zhang   /* scale the diagonal part */
1378a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1379a30f8f8cSSatish Balay 
13805e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1381ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13820298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1383a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1384a30f8f8cSSatish Balay }
1385a30f8f8cSSatish Balay 
13864a2ae208SSatish Balay #undef __FUNCT__
13874a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1388dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1389a30f8f8cSSatish Balay {
1390f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1391dfbe8321SBarry Smith   PetscErrorCode ierr;
1392a30f8f8cSSatish Balay 
1393a30f8f8cSSatish Balay   PetscFunctionBegin;
1394a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1395a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1396a30f8f8cSSatish Balay }
1397a30f8f8cSSatish Balay 
13986849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1399a30f8f8cSSatish Balay 
14004a2ae208SSatish Balay #undef __FUNCT__
14014a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1402ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1403a30f8f8cSSatish Balay {
1404a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1405a30f8f8cSSatish Balay   Mat            a,b,c,d;
1406ace3abfcSBarry Smith   PetscBool      flg;
1407dfbe8321SBarry Smith   PetscErrorCode ierr;
1408a30f8f8cSSatish Balay 
1409a30f8f8cSSatish Balay   PetscFunctionBegin;
1410a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1411a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1412a30f8f8cSSatish Balay 
1413a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1414abc0a331SBarry Smith   if (flg) {
1415a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1416a30f8f8cSSatish Balay   }
1417ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1418a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1419a30f8f8cSSatish Balay }
1420a30f8f8cSSatish Balay 
14214a2ae208SSatish Balay #undef __FUNCT__
14223c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
14233c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
14243c896bc6SHong Zhang {
14253c896bc6SHong Zhang   PetscErrorCode ierr;
14263c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14273c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
14283c896bc6SHong Zhang 
14293c896bc6SHong Zhang   PetscFunctionBegin;
14303c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
14313c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1432d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
14333c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1434d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
14353c896bc6SHong Zhang   } else {
14363c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
14373c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
14383c896bc6SHong Zhang   }
14393c896bc6SHong Zhang   PetscFunctionReturn(0);
14403c896bc6SHong Zhang }
14413c896bc6SHong Zhang 
14423c896bc6SHong Zhang #undef __FUNCT__
14434994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ"
14444994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1445273d9f13SBarry Smith {
1446dfbe8321SBarry Smith   PetscErrorCode ierr;
1447273d9f13SBarry Smith 
1448273d9f13SBarry Smith   PetscFunctionBegin;
1449535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1450273d9f13SBarry Smith   PetscFunctionReturn(0);
1451273d9f13SBarry Smith }
1452a5e6ed63SBarry Smith 
14534fe895cdSHong Zhang #undef __FUNCT__
14544fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14554fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14564fe895cdSHong Zhang {
14574fe895cdSHong Zhang   PetscErrorCode ierr;
14584fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
14594fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14604fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14614fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14624fe895cdSHong Zhang 
14634fe895cdSHong Zhang   PetscFunctionBegin;
14644fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14654fe895cdSHong Zhang     PetscScalar alpha = a;
14664fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
14674fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1468c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
14698b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
14704fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
14714fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1472c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
14738b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1474a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1475ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1476ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1477ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1478ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
14794fe895cdSHong Zhang   } else {
14804de5dceeSHong Zhang     Mat      B;
14814de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
14824de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1483d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14844de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
14854de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
14864de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
14874de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
14884de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
14894de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
14904de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
14914de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
14924de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
14934de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
14944de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
14954de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
14964de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
14974de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
14984de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1499d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
15004de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
15014fe895cdSHong Zhang   }
15024fe895cdSHong Zhang   PetscFunctionReturn(0);
15034fe895cdSHong Zhang }
15044fe895cdSHong Zhang 
1505a5e6ed63SBarry Smith #undef __FUNCT__
1506a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
15071302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1508a5e6ed63SBarry Smith {
15096849ba73SBarry Smith   PetscErrorCode ierr;
15101302d50aSBarry Smith   PetscInt       i;
1511ace3abfcSBarry Smith   PetscBool      flg;
1512a5e6ed63SBarry Smith 
15136849ba73SBarry Smith   PetscFunctionBegin;
15144dcd73b1SHong Zhang   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1515a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1516a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
15174dcd73b1SHong Zhang     if (!flg) { /* *B[i] is non-symmetric, set flag */
15184dcd73b1SHong Zhang       ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr);
1519a5e6ed63SBarry Smith     }
15204dcd73b1SHong Zhang   }
1521a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1522a5e6ed63SBarry Smith }
1523a5e6ed63SBarry Smith 
1524a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
15253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1526a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1527a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1528a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
152997304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1530431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1531431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1532a30f8f8cSSatish Balay                                        0,
1533a30f8f8cSSatish Balay                                        0,
1534a30f8f8cSSatish Balay                                        0,
153597304618SKris Buschelman                                /* 10*/ 0,
1536a30f8f8cSSatish Balay                                        0,
1537a30f8f8cSSatish Balay                                        0,
153841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1539a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
154097304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1541a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1542a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1543a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1544a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
154597304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1546a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1547a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1548a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1549d519adbfSMatthew Knepley                                /* 24*/ 0,
1550a30f8f8cSSatish Balay                                        0,
1551a30f8f8cSSatish Balay                                        0,
1552a30f8f8cSSatish Balay                                        0,
1553a30f8f8cSSatish Balay                                        0,
15544994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1555b5df2d14SHong Zhang                                        0,
1556a30f8f8cSSatish Balay                                        0,
1557a30f8f8cSSatish Balay                                        0,
1558a30f8f8cSSatish Balay                                        0,
1559d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1560a30f8f8cSSatish Balay                                        0,
1561a30f8f8cSSatish Balay                                        0,
1562a30f8f8cSSatish Balay                                        0,
1563a30f8f8cSSatish Balay                                        0,
1564d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
1565a5e6ed63SBarry Smith                                        MatGetSubMatrices_MPISBAIJ,
1566d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1567a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
15683c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1569d519adbfSMatthew Knepley                                /* 44*/ 0,
1570a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
1571a30f8f8cSSatish Balay                                        0,
1572a30f8f8cSSatish Balay                                        0,
1573a30f8f8cSSatish Balay                                        0,
1574f73d5cc4SBarry Smith                                /* 49*/ 0,
1575a30f8f8cSSatish Balay                                        0,
1576a30f8f8cSSatish Balay                                        0,
1577a30f8f8cSSatish Balay                                        0,
1578a30f8f8cSSatish Balay                                        0,
1579d519adbfSMatthew Knepley                                /* 54*/ 0,
1580a30f8f8cSSatish Balay                                        0,
1581a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1582a30f8f8cSSatish Balay                                        0,
1583a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
1584*8f46ffcaSHong Zhang                                /* 59*/ MatGetSubMatrix_MPISBAIJ,
1585a30f8f8cSSatish Balay                                        0,
1586a30f8f8cSSatish Balay                                        0,
1587357abbc8SBarry Smith                                        0,
158824d5174aSHong Zhang                                        0,
1589d519adbfSMatthew Knepley                                /* 64*/ 0,
159024d5174aSHong Zhang                                        0,
159124d5174aSHong Zhang                                        0,
159224d5174aSHong Zhang                                        0,
159324d5174aSHong Zhang                                        0,
1594d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
159524d5174aSHong Zhang                                        0,
159697304618SKris Buschelman                                        0,
159797304618SKris Buschelman                                        0,
159897304618SKris Buschelman                                        0,
1599d519adbfSMatthew Knepley                                /* 74*/ 0,
160097304618SKris Buschelman                                        0,
160197304618SKris Buschelman                                        0,
160297304618SKris Buschelman                                        0,
160397304618SKris Buschelman                                        0,
1604d519adbfSMatthew Knepley                                /* 79*/ 0,
160597304618SKris Buschelman                                        0,
160697304618SKris Buschelman                                        0,
160797304618SKris Buschelman                                        0,
16085bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1609d519adbfSMatthew Knepley                                /* 84*/ 0,
1610865e5f61SKris Buschelman                                        0,
1611865e5f61SKris Buschelman                                        0,
1612865e5f61SKris Buschelman                                        0,
1613865e5f61SKris Buschelman                                        0,
1614d519adbfSMatthew Knepley                                /* 89*/ 0,
1615865e5f61SKris Buschelman                                        0,
1616865e5f61SKris Buschelman                                        0,
1617865e5f61SKris Buschelman                                        0,
1618865e5f61SKris Buschelman                                        0,
1619d519adbfSMatthew Knepley                                /* 94*/ 0,
1620865e5f61SKris Buschelman                                        0,
1621865e5f61SKris Buschelman                                        0,
162299cafbc1SBarry Smith                                        0,
162399cafbc1SBarry Smith                                        0,
1624d519adbfSMatthew Knepley                                /* 99*/ 0,
162599cafbc1SBarry Smith                                        0,
162699cafbc1SBarry Smith                                        0,
162799cafbc1SBarry Smith                                        0,
162899cafbc1SBarry Smith                                        0,
1629d519adbfSMatthew Knepley                                /*104*/ 0,
163099cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1631d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1632d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
163395936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
163495936485SShri Abhyankar                                /*109*/ 0,
163595936485SShri Abhyankar                                        0,
163695936485SShri Abhyankar                                        0,
163795936485SShri Abhyankar                                        0,
163895936485SShri Abhyankar                                        0,
163995936485SShri Abhyankar                                /*114*/ 0,
164095936485SShri Abhyankar                                        0,
164195936485SShri Abhyankar                                        0,
164295936485SShri Abhyankar                                        0,
164395936485SShri Abhyankar                                        0,
164495936485SShri Abhyankar                                /*119*/ 0,
164595936485SShri Abhyankar                                        0,
164695936485SShri Abhyankar                                        0,
16473964eb88SJed Brown                                        0,
16483964eb88SJed Brown                                        0,
16493964eb88SJed Brown                                /*124*/ 0,
16503964eb88SJed Brown                                        0,
16513964eb88SJed Brown                                        0,
16523964eb88SJed Brown                                        0,
16533964eb88SJed Brown                                        0,
16543964eb88SJed Brown                                /*129*/ 0,
16553964eb88SJed Brown                                        0,
16563964eb88SJed Brown                                        0,
16573964eb88SJed Brown                                        0,
16583964eb88SJed Brown                                        0,
16593964eb88SJed Brown                                /*134*/ 0,
16603964eb88SJed Brown                                        0,
16613964eb88SJed Brown                                        0,
16623964eb88SJed Brown                                        0,
16633964eb88SJed Brown                                        0,
16643964eb88SJed Brown                                /*139*/ 0,
1665f9426fe0SMark Adams                                        0,
166659f5e6ceSHong Zhang                                        0,
166759f5e6ceSHong Zhang                                        0,
166859f5e6ceSHong Zhang                                        0,
166959f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
167099cafbc1SBarry Smith };
1671a30f8f8cSSatish Balay 
16724a2ae208SSatish Balay #undef __FUNCT__
16734a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
167411bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1675a30f8f8cSSatish Balay {
1676a30f8f8cSSatish Balay   PetscFunctionBegin;
1677a30f8f8cSSatish Balay   *a = ((Mat_MPISBAIJ*)A->data)->A;
1678a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1679a30f8f8cSSatish Balay }
1680a30f8f8cSSatish Balay 
16814a2ae208SSatish Balay #undef __FUNCT__
1682a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1683b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1684a23d5eceSKris Buschelman {
1685a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1686dfbe8321SBarry Smith   PetscErrorCode ierr;
1687535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
1688a23d5eceSKris Buschelman 
1689a23d5eceSKris Buschelman   PetscFunctionBegin;
169033d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
169126283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
169226283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1693e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1694899cda47SBarry Smith 
1695a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1696d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1697d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1698c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1699a23d5eceSKris Buschelman 
1700d0f46423SBarry Smith   B->rmap->bs = bs;
1701a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1702a23d5eceSKris Buschelman   b->mbs      = mbs;
1703a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1704de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1705de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1706a23d5eceSKris Buschelman 
1707a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1708d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1709a23d5eceSKris Buschelman   }
1710d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1711d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1712a23d5eceSKris Buschelman 
1713d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1714d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1715a23d5eceSKris Buschelman 
1716526dfc15SBarry Smith   if (!B->preallocated) {
1717f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1718d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
17199c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
17203bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1721f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1722d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
17234aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
17243bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1725ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1726526dfc15SBarry Smith   }
1727a23d5eceSKris Buschelman 
1728526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1729526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
173026fbe8dcSKarl Rupp 
1731526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1732a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1733a23d5eceSKris Buschelman }
1734a23d5eceSKris Buschelman 
1735dfb205c3SBarry Smith #undef __FUNCT__
1736dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ"
1737dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1738dfb205c3SBarry Smith {
1739dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
1740dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1741dfb205c3SBarry Smith   const PetscInt *JJ    =0;
1742dfb205c3SBarry Smith   PetscScalar    *values=0;
1743dfb205c3SBarry Smith   PetscErrorCode ierr;
1744dfb205c3SBarry Smith 
1745dfb205c3SBarry Smith   PetscFunctionBegin;
1746ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1747dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
1748dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
1749dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1750dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1751e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1752dfb205c3SBarry Smith   m      = B->rmap->n/bs;
1753dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
1754dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
1755dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
1756dfb205c3SBarry Smith 
1757dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1758dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
1759dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1760dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
1761dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1762dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
1763dfb205c3SBarry Smith     JJ     = jj + ii[i];
1764dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
1765dfb205c3SBarry Smith       if (*JJ >= cstart) break;
1766dfb205c3SBarry Smith       JJ++;
1767dfb205c3SBarry Smith     }
1768dfb205c3SBarry Smith     d = 0;
1769dfb205c3SBarry Smith     for (; j<nz; j++) {
1770dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
1771dfb205c3SBarry Smith       d++;
1772dfb205c3SBarry Smith     }
1773dfb205c3SBarry Smith     d_nnz[i] = d;
1774dfb205c3SBarry Smith     o_nnz[i] = nz - d;
1775dfb205c3SBarry Smith   }
1776dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1777dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
1778dfb205c3SBarry Smith 
1779dfb205c3SBarry Smith   values = (PetscScalar*)V;
1780dfb205c3SBarry Smith   if (!values) {
1781785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
1782dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1783dfb205c3SBarry Smith   }
1784dfb205c3SBarry Smith   for (i=0; i<m; i++) {
1785dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
1786dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
1787dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
1788dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
1789dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
1790dfb205c3SBarry Smith   }
1791dfb205c3SBarry Smith 
1792dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
1793dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1794dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17957827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1796dfb205c3SBarry Smith   PetscFunctionReturn(0);
1797dfb205c3SBarry Smith }
1798dfb205c3SBarry Smith 
17990bad9183SKris Buschelman /*MC
1800fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
1801828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
1802828413b8SBarry Smith    the matrix is stored.
1803828413b8SBarry Smith 
1804828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
1805828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
18060bad9183SKris Buschelman 
18070bad9183SKris Buschelman    Options Database Keys:
18080bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
18090bad9183SKris Buschelman 
18100bad9183SKris Buschelman   Level: beginner
18110bad9183SKris Buschelman 
18120bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
18130bad9183SKris Buschelman M*/
18140bad9183SKris Buschelman 
18158cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*);
1816aa5a9175SDahai Guo 
1817a23d5eceSKris Buschelman #undef __FUNCT__
18184a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
18198cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
1820b5df2d14SHong Zhang {
1821b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1822dfbe8321SBarry Smith   PetscErrorCode ierr;
182394ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
1824b5df2d14SHong Zhang 
1825b5df2d14SHong Zhang   PetscFunctionBegin;
1826b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1827b0a32e0cSBarry Smith   B->data = (void*)b;
1828b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
1831b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
1832b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
1833b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
183426fbe8dcSKarl Rupp 
1835ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
1836ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
1837b5df2d14SHong Zhang 
1838b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1839854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
1840b5df2d14SHong Zhang 
1841b5df2d14SHong Zhang   /* build cache for off array entries formed */
1842ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
184326fbe8dcSKarl Rupp 
1844b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
18450298fd71SBarry Smith   b->colmap      = NULL;
18460298fd71SBarry Smith   b->garray      = NULL;
1847b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang   /* stuff used in block assembly */
1850b5df2d14SHong Zhang   b->barray = 0;
1851b5df2d14SHong Zhang 
1852b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1853b5df2d14SHong Zhang   b->lvec    = 0;
1854b5df2d14SHong Zhang   b->Mvctx   = 0;
185540781036SHong Zhang   b->slvec0  = 0;
185640781036SHong Zhang   b->slvec0b = 0;
185740781036SHong Zhang   b->slvec1  = 0;
185840781036SHong Zhang   b->slvec1a = 0;
185940781036SHong Zhang   b->slvec1b = 0;
186040781036SHong Zhang   b->sMvctx  = 0;
1861b5df2d14SHong Zhang 
1862b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1863b5df2d14SHong Zhang   b->rowindices   = 0;
1864b5df2d14SHong Zhang   b->rowvalues    = 0;
1865b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang   /* hash table stuff */
1868b5df2d14SHong Zhang   b->ht           = 0;
1869b5df2d14SHong Zhang   b->hd           = 0;
1870b5df2d14SHong Zhang   b->ht_size      = 0;
1871b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1872b5df2d14SHong Zhang   b->ht_fact      = 0;
1873b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1874b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1875b5df2d14SHong Zhang 
18767a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
18777a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
18787a868f3eSHong Zhang 
187959ffdab8SBarry Smith   b->in_loc = 0;
188059ffdab8SBarry Smith   b->v_loc  = 0;
188159ffdab8SBarry Smith   b->n_loc  = 0;
188294ae4db5SBarry Smith 
1883bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1884bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1885bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1886bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1887bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
1888bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr);
18896214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
18906214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
18916214f412SHong Zhang #endif
1892aa5a9175SDahai Guo 
189323ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
189423ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
189523ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
189623ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
189726fbe8dcSKarl Rupp 
189817667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
189994ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
190094ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
190194ae4db5SBarry Smith   if (flg) {
190294ae4db5SBarry Smith     PetscReal fact = 1.39;
190394ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
190494ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
190594ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
190694ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
190794ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
190894ae4db5SBarry Smith   }
190994ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1910b5df2d14SHong Zhang   PetscFunctionReturn(0);
1911b5df2d14SHong Zhang }
1912b5df2d14SHong Zhang 
1913209238afSKris Buschelman /*MC
1914002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1915209238afSKris Buschelman 
1916209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1917209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1918209238afSKris Buschelman 
1919209238afSKris Buschelman    Options Database Keys:
1920209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1921209238afSKris Buschelman 
1922209238afSKris Buschelman   Level: beginner
1923209238afSKris Buschelman 
1924209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1925209238afSKris Buschelman M*/
1926209238afSKris Buschelman 
19274a2ae208SSatish Balay #undef __FUNCT__
19284a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1929b5df2d14SHong Zhang /*@C
1930b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1931b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1932b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1933b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1934b5df2d14SHong Zhang 
1935b5df2d14SHong Zhang    Collective on Mat
1936b5df2d14SHong Zhang 
1937b5df2d14SHong Zhang    Input Parameters:
19381c4f3114SJed Brown +  B - the matrix
1939bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1940bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1941b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1942b5df2d14SHong Zhang            submatrix  (same for all local rows)
1943b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
19446d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
19450298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
194695742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
1947b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1948b5df2d14SHong Zhang            submatrix (same for all local rows).
1949b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1950c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
19510298fd71SBarry Smith            (possibly different for each block row) or NULL.
1952b5df2d14SHong Zhang 
1953b5df2d14SHong Zhang 
1954b5df2d14SHong Zhang    Options Database Keys:
1955b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1956b5df2d14SHong Zhang                      block calculations (much slower)
1957b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1958b5df2d14SHong Zhang 
1959b5df2d14SHong Zhang    Notes:
1960b5df2d14SHong Zhang 
1961b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1962b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1963b5df2d14SHong Zhang 
196449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
196549a6f317SBarry Smith 
1966b5df2d14SHong Zhang    Storage Information:
1967b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1968b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1969b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1970b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1971b5df2d14SHong Zhang 
1972b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1973b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
19740298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
1975b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1976b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1977b5df2d14SHong Zhang 
1978aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1979aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1980aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1981aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1982aa95bbe8SBarry Smith 
1983b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1984b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1985b5df2d14SHong Zhang 
1986b5df2d14SHong Zhang .vb
1987b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1988a4b1a0f6SJed Brown           --------------------------
1989c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
1990c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
1991c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
1992a4b1a0f6SJed Brown           --------------------------
1993b5df2d14SHong Zhang .ve
1994b5df2d14SHong Zhang 
1995b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1996b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
19976d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19986d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1999b5df2d14SHong Zhang 
20006d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20016d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2002c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2003c2fc9fa9SBarry Smith 
2004b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2005b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2006b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2007b5df2d14SHong Zhang    matrices.
2008b5df2d14SHong Zhang 
2009b5df2d14SHong Zhang    Level: intermediate
2010b5df2d14SHong Zhang 
2011b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2012b5df2d14SHong Zhang 
2013ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2014b5df2d14SHong Zhang @*/
20157087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2016b5df2d14SHong Zhang {
20174ac538c5SBarry Smith   PetscErrorCode ierr;
2018b5df2d14SHong Zhang 
2019b5df2d14SHong Zhang   PetscFunctionBegin;
20206ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
20216ba663aaSJed Brown   PetscValidType(B,1);
20226ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
20234ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2024b5df2d14SHong Zhang   PetscFunctionReturn(0);
2025b5df2d14SHong Zhang }
2026b5df2d14SHong Zhang 
20274a2ae208SSatish Balay #undef __FUNCT__
202869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ"
2029a30f8f8cSSatish Balay /*@C
203069b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2031a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2032a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2033a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2034a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2035a30f8f8cSSatish Balay 
2036a30f8f8cSSatish Balay    Collective on MPI_Comm
2037a30f8f8cSSatish Balay 
2038a30f8f8cSSatish Balay    Input Parameters:
2039a30f8f8cSSatish Balay +  comm - MPI communicator
2040bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2041bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2042a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2043a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2044a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2045a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2046a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2047a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2048a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2049a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2050a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2051a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2052a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
20536d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
20540298fd71SBarry Smith            (possibly different for each block block row) or NULL.
205595742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
205695742e49SBarry Smith            set its value even if it is zero.
2057a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2058a30f8f8cSSatish Balay            submatrix (same for all local rows).
2059a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2060a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
20610298fd71SBarry Smith            each block row) or NULL.
2062a30f8f8cSSatish Balay 
2063a30f8f8cSSatish Balay    Output Parameter:
2064a30f8f8cSSatish Balay .  A - the matrix
2065a30f8f8cSSatish Balay 
2066a30f8f8cSSatish Balay    Options Database Keys:
2067a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
2068a30f8f8cSSatish Balay                      block calculations (much slower)
2069a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2070a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
2071a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2072a30f8f8cSSatish Balay 
2073175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2074ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2075175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2076175b88e8SBarry Smith 
2077a30f8f8cSSatish Balay    Notes:
2078d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
20796d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2080d1be2dadSMatthew Knepley 
2081a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2082a30f8f8cSSatish Balay    (possibly both).
2083a30f8f8cSSatish Balay 
2084a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2085a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2086a30f8f8cSSatish Balay 
208749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
208849a6f317SBarry Smith 
2089a30f8f8cSSatish Balay    Storage Information:
2090a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2091a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2092a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2093a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2094a30f8f8cSSatish Balay 
2095a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2096a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
20970298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2098a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2099a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2100a30f8f8cSSatish Balay 
2101a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2102a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2103a30f8f8cSSatish Balay 
2104a30f8f8cSSatish Balay .vb
2105a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2106a4b1a0f6SJed Brown           --------------------------
2107c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2108c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2109c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2110a4b1a0f6SJed Brown           --------------------------
2111a30f8f8cSSatish Balay .ve
2112a30f8f8cSSatish Balay 
2113a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2114a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
21156d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
21166d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2117a30f8f8cSSatish Balay 
21186d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
21196d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2120a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2121a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2122a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2123a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2124a30f8f8cSSatish Balay    matrices.
2125a30f8f8cSSatish Balay 
2126a30f8f8cSSatish Balay    Level: intermediate
2127a30f8f8cSSatish Balay 
2128a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2129a30f8f8cSSatish Balay 
213069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2131a30f8f8cSSatish Balay @*/
2132a30f8f8cSSatish Balay 
213369b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2134a30f8f8cSSatish Balay {
21356849ba73SBarry Smith   PetscErrorCode ierr;
21361302d50aSBarry Smith   PetscMPIInt    size;
2137a30f8f8cSSatish Balay 
2138a30f8f8cSSatish Balay   PetscFunctionBegin;
2139f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2140f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2141273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2142273d9f13SBarry Smith   if (size > 1) {
2143b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2144b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2145273d9f13SBarry Smith   } else {
2146273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2147273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2148273d9f13SBarry Smith   }
2149a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2150a30f8f8cSSatish Balay }
2151a30f8f8cSSatish Balay 
2152a30f8f8cSSatish Balay 
21534a2ae208SSatish Balay #undef __FUNCT__
21544a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
21556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2156a30f8f8cSSatish Balay {
2157a30f8f8cSSatish Balay   Mat            mat;
2158a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2159dfbe8321SBarry Smith   PetscErrorCode ierr;
2160d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2161387bc808SHong Zhang   PetscScalar    *array;
2162a30f8f8cSSatish Balay 
2163a30f8f8cSSatish Balay   PetscFunctionBegin;
2164a30f8f8cSSatish Balay   *newmat = 0;
216526fbe8dcSKarl Rupp 
2166ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2167d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
21687adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
21691d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
21701e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
21711e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2172e1b6402fSHong Zhang 
2173d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2174273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
217582327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
21767fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
21777fff6886SHong Zhang 
2178b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2179a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2180a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2181a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2182a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2183a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2184a30f8f8cSSatish Balay 
2185899cda47SBarry Smith 
2186a30f8f8cSSatish Balay   a->size         = oldmat->size;
2187a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2188a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2189a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2190a30f8f8cSSatish Balay   a->rowindices   = 0;
2191a30f8f8cSSatish Balay   a->rowvalues    = 0;
2192a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2193a30f8f8cSSatish Balay   a->barray       = 0;
2194899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2195899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2196899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2197899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2198a30f8f8cSSatish Balay 
2199a30f8f8cSSatish Balay   /* hash table stuff */
2200a30f8f8cSSatish Balay   a->ht           = 0;
2201a30f8f8cSSatish Balay   a->hd           = 0;
2202a30f8f8cSSatish Balay   a->ht_size      = 0;
2203a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2204a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2205a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2206a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2207a30f8f8cSSatish Balay 
2208899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2209a30f8f8cSSatish Balay   if (oldmat->colmap) {
2210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2211a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2212a30f8f8cSSatish Balay #else
2213854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
22143bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
22151302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2216a30f8f8cSSatish Balay #endif
2217a30f8f8cSSatish Balay   } else a->colmap = 0;
2218387bc808SHong Zhang 
2219a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2220785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
22213bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
22221302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2223a30f8f8cSSatish Balay   } else a->garray = 0;
2224a30f8f8cSSatish Balay 
2225ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2226a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
22273bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
22293bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
223082327fa8SHong Zhang 
223182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
22323bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
223382327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
22343bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2235387bc808SHong Zhang 
2236387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
22371ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2238778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2239778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
22401ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
22411ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2242778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
22431ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
22443bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
22453bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
22463bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
22473bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
22483bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2249387bc808SHong Zhang 
2250387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2251387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2252387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
22533bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
225482327fa8SHong Zhang 
2255a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
22563bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2257a30f8f8cSSatish Balay   ierr    =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
22583bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2259140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2260a30f8f8cSSatish Balay   *newmat = mat;
2261a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2262a30f8f8cSSatish Balay }
2263a30f8f8cSSatish Balay 
22644a2ae208SSatish Balay #undef __FUNCT__
22655bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ"
2266112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
226795936485SShri Abhyankar {
226895936485SShri Abhyankar   PetscErrorCode ierr;
226995936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
227095936485SShri Abhyankar   PetscScalar    *vals,*buf;
2271ce94432eSBarry Smith   MPI_Comm       comm;
227295936485SShri Abhyankar   MPI_Status     status;
2273adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2274adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
227595936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
22763059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
227795936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
227895936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
227995936485SShri Abhyankar   int            fd;
228095936485SShri Abhyankar 
228195936485SShri Abhyankar   PetscFunctionBegin;
2282ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
22830298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
22840298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
228595936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
22863059b6faSBarry Smith   if (bs < 0) bs = 1;
228795936485SShri Abhyankar 
228895936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
228995936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
229095936485SShri Abhyankar   if (!rank) {
229195936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
229295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
229395936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
229495936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
229595936485SShri Abhyankar   }
229695936485SShri Abhyankar 
229795936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
229895936485SShri Abhyankar 
229995936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
230026fbe8dcSKarl Rupp   M    = header[1];
230126fbe8dcSKarl Rupp   N    = header[2];
230295936485SShri Abhyankar 
230395936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
230495936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
230595936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
230695936485SShri Abhyankar 
230795936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
230895936485SShri Abhyankar   if (sizesset) {
230995936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
231095936485SShri Abhyankar   }
2311abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2312abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
231395936485SShri Abhyankar 
231495936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
231595936485SShri Abhyankar 
231695936485SShri Abhyankar   /*
231795936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
231895936485SShri Abhyankar      divisible by the blocksize
231995936485SShri Abhyankar   */
232095936485SShri Abhyankar   Mbs        = M/bs;
232195936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
232295936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
232395936485SShri Abhyankar   else                  Mbs++;
232495936485SShri Abhyankar   if (extra_rows &&!rank) {
232595936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
232695936485SShri Abhyankar   }
232795936485SShri Abhyankar 
232895936485SShri Abhyankar   /* determine ownership of all rows */
232995936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
233095936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
233195936485SShri Abhyankar     m   = mbs*bs;
233295936485SShri Abhyankar   } else { /* User Set */
233395936485SShri Abhyankar     m   = newmat->rmap->n;
233495936485SShri Abhyankar     mbs = m/bs;
233595936485SShri Abhyankar   }
2336dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
23374dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
233895936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
233995936485SShri Abhyankar   rowners[0] = 0;
234095936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
234195936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
234295936485SShri Abhyankar   rstart = rowners[rank];
234395936485SShri Abhyankar   rend   = rowners[rank+1];
234495936485SShri Abhyankar 
234595936485SShri Abhyankar   /* distribute row lengths to all processors */
2346785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
234795936485SShri Abhyankar   if (!rank) {
2348854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
234995936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
235095936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2351785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
235295936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
235395936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
235495936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
235595936485SShri Abhyankar   } else {
235695936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
235795936485SShri Abhyankar   }
235895936485SShri Abhyankar 
235995936485SShri Abhyankar   if (!rank) {   /* procs[0] */
236095936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2361785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
236295936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
236395936485SShri Abhyankar     for (i=0; i<size; i++) {
236495936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
236595936485SShri Abhyankar         procsnz[i] += rowlengths[j];
236695936485SShri Abhyankar       }
236795936485SShri Abhyankar     }
236895936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
236995936485SShri Abhyankar 
237095936485SShri Abhyankar     /* determine max buffer needed and allocate it */
237195936485SShri Abhyankar     maxnz = 0;
237295936485SShri Abhyankar     for (i=0; i<size; i++) {
237395936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
237495936485SShri Abhyankar     }
2375785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
237695936485SShri Abhyankar 
237795936485SShri Abhyankar     /* read in my part of the matrix column indices  */
237895936485SShri Abhyankar     nz     = procsnz[0];
2379785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
238095936485SShri Abhyankar     mycols = ibuf;
238195936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
238295936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
238326fbe8dcSKarl Rupp     if (size == 1) {
238426fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
238526fbe8dcSKarl Rupp     }
238695936485SShri Abhyankar 
238795936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
238895936485SShri Abhyankar     for (i=1; i<size-1; i++) {
238995936485SShri Abhyankar       nz   = procsnz[i];
239095936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
239195936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
239295936485SShri Abhyankar     }
239395936485SShri Abhyankar     /* read in the stuff for the last proc */
239495936485SShri Abhyankar     if (size != 1) {
239595936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
239695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
239795936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
239895936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
239995936485SShri Abhyankar     }
240095936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
240195936485SShri Abhyankar   } else {  /* procs[i], i>0 */
240295936485SShri Abhyankar     /* determine buffer space needed for message */
240395936485SShri Abhyankar     nz = 0;
240426fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2405785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
240695936485SShri Abhyankar     mycols = ibuf;
240795936485SShri Abhyankar     /* receive message of column indices*/
240895936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
240995936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
241095936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
241195936485SShri Abhyankar   }
241295936485SShri Abhyankar 
241395936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2414dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2415dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
241695936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
241795936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
241895936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
241995936485SShri Abhyankar   rowcount = 0;
242095936485SShri Abhyankar   nzcount  = 0;
242195936485SShri Abhyankar   for (i=0; i<mbs; i++) {
242295936485SShri Abhyankar     dcount  = 0;
242395936485SShri Abhyankar     odcount = 0;
242495936485SShri Abhyankar     for (j=0; j<bs; j++) {
242595936485SShri Abhyankar       kmax = locrowlens[rowcount];
242695936485SShri Abhyankar       for (k=0; k<kmax; k++) {
242795936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
242895936485SShri Abhyankar         if (!mask[tmp]) {
242995936485SShri Abhyankar           mask[tmp] = 1;
243095936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
243195936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
243295936485SShri Abhyankar         }
243395936485SShri Abhyankar       }
243495936485SShri Abhyankar       rowcount++;
243595936485SShri Abhyankar     }
243695936485SShri Abhyankar 
243795936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
243895936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
243995936485SShri Abhyankar 
244095936485SShri Abhyankar     /* zero out the mask elements we set */
244195936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
244295936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
244395936485SShri Abhyankar   }
244495936485SShri Abhyankar   if (!sizesset) {
244595936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
244695936485SShri Abhyankar   }
244795936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
24486816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
244995936485SShri Abhyankar 
245095936485SShri Abhyankar   if (!rank) {
2451785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
245295936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
245395936485SShri Abhyankar     nz     = procsnz[0];
245495936485SShri Abhyankar     vals   = buf;
245595936485SShri Abhyankar     mycols = ibuf;
245695936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
245795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
245826fbe8dcSKarl Rupp     if (size == 1) {
245926fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
246026fbe8dcSKarl Rupp     }
246195936485SShri Abhyankar 
246295936485SShri Abhyankar     /* insert into matrix */
246395936485SShri Abhyankar     jj = rstart*bs;
246495936485SShri Abhyankar     for (i=0; i<m; i++) {
246595936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
246695936485SShri Abhyankar       mycols += locrowlens[i];
246795936485SShri Abhyankar       vals   += locrowlens[i];
246895936485SShri Abhyankar       jj++;
246995936485SShri Abhyankar     }
247095936485SShri Abhyankar 
247195936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
247295936485SShri Abhyankar     for (i=1; i<size-1; i++) {
247395936485SShri Abhyankar       nz   = procsnz[i];
247495936485SShri Abhyankar       vals = buf;
247595936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
247695936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
247795936485SShri Abhyankar     }
247895936485SShri Abhyankar     /* the last proc */
247995936485SShri Abhyankar     if (size != 1) {
248095936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
248195936485SShri Abhyankar       vals = buf;
248295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
248395936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
248495936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
248595936485SShri Abhyankar     }
248695936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
248795936485SShri Abhyankar 
248895936485SShri Abhyankar   } else {
248995936485SShri Abhyankar     /* receive numeric values */
2490785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
249195936485SShri Abhyankar 
249295936485SShri Abhyankar     /* receive message of values*/
249395936485SShri Abhyankar     vals   = buf;
249495936485SShri Abhyankar     mycols = ibuf;
249595936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
249695936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
249795936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
249895936485SShri Abhyankar 
249995936485SShri Abhyankar     /* insert into matrix */
250095936485SShri Abhyankar     jj = rstart*bs;
250195936485SShri Abhyankar     for (i=0; i<m; i++) {
250295936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
250395936485SShri Abhyankar       mycols += locrowlens[i];
250495936485SShri Abhyankar       vals   += locrowlens[i];
250595936485SShri Abhyankar       jj++;
250695936485SShri Abhyankar     }
250795936485SShri Abhyankar   }
250895936485SShri Abhyankar 
250995936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
251095936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
251195936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
251295936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
251395936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
251495936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
251595936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
251695936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
251795936485SShri Abhyankar   PetscFunctionReturn(0);
251895936485SShri Abhyankar }
251995936485SShri Abhyankar 
252095936485SShri Abhyankar #undef __FUNCT__
25214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2522dcf5cc72SBarry Smith /*XXXXX@
2523a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2524a30f8f8cSSatish Balay 
2525a30f8f8cSSatish Balay    Input Parameters:
2526a30f8f8cSSatish Balay .  mat  - the matrix
2527a30f8f8cSSatish Balay .  fact - factor
2528a30f8f8cSSatish Balay 
2529c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2530a30f8f8cSSatish Balay 
2531a30f8f8cSSatish Balay    Level: advanced
2532a30f8f8cSSatish Balay 
2533a30f8f8cSSatish Balay   Notes:
2534a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2535a30f8f8cSSatish Balay 
2536a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2537a30f8f8cSSatish Balay 
2538a30f8f8cSSatish Balay .seealso: MatSetOption()
2539dcf5cc72SBarry Smith @XXXXX*/
2540dcf5cc72SBarry Smith 
254124d5174aSHong Zhang 
25424a2ae208SSatish Balay #undef __FUNCT__
2543985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2544985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
254524d5174aSHong Zhang {
254624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2547f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2548ca54ac64SHong Zhang   PetscReal      atmp;
254987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2550dfbe8321SBarry Smith   PetscErrorCode ierr;
25511302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25521302d50aSBarry Smith   PetscMPIInt    rank,size;
25531302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
255487828ca2SBarry Smith   PetscScalar    *va;
25558a1c53f2SBarry Smith   MatScalar      *ba;
2556f4c0e9e4SHong Zhang   MPI_Status     stat;
255724d5174aSHong Zhang 
255824d5174aSHong Zhang   PetscFunctionBegin;
2559e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
25600298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
25611ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2562f4c0e9e4SHong Zhang 
2563ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2564ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2565f4c0e9e4SHong Zhang 
2566d0f46423SBarry Smith   bs  = A->rmap->bs;
2567f4c0e9e4SHong Zhang   mbs = a->mbs;
2568f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2569f4c0e9e4SHong Zhang   ba  = b->a;
2570f4c0e9e4SHong Zhang   bi  = b->i;
2571f4c0e9e4SHong Zhang   bj  = b->j;
2572f4c0e9e4SHong Zhang 
2573f4c0e9e4SHong Zhang   /* find ownerships */
2574d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2575f4c0e9e4SHong Zhang 
2576f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2577785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2578ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2579f4c0e9e4SHong Zhang 
2580f4c0e9e4SHong Zhang   /* row_max for B */
2581b8475685SHong Zhang   if (rank != size-1) {
2582f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2583f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2584f4c0e9e4SHong Zhang       brow  = bs*i;
2585f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2586f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2587f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2588ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
258904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2590f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2591f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2592ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2593ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2594f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2595f4c0e9e4SHong Zhang           }
2596f4c0e9e4SHong Zhang         }
2597f4c0e9e4SHong Zhang         bj++;
2598f4c0e9e4SHong Zhang       }
2599f4c0e9e4SHong Zhang     }
2600f4c0e9e4SHong Zhang 
2601f4c0e9e4SHong Zhang     /* send values to its owners */
2602f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2603f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2604ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2605ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2606ca54ac64SHong Zhang     }
2607f4c0e9e4SHong Zhang   }
2608f4c0e9e4SHong Zhang 
2609f4c0e9e4SHong Zhang   /* receive values */
2610ca54ac64SHong Zhang   if (rank) {
2611f4c0e9e4SHong Zhang     rvalues = work;
2612ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2613f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2614ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2615f4c0e9e4SHong Zhang       /* process values */
2616f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2617ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2618f4c0e9e4SHong Zhang       }
2619f4c0e9e4SHong Zhang     }
2620ca54ac64SHong Zhang   }
2621f4c0e9e4SHong Zhang 
26221ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2623ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
262424d5174aSHong Zhang   PetscFunctionReturn(0);
262524d5174aSHong Zhang }
26262798e883SHong Zhang 
26272798e883SHong Zhang #undef __FUNCT__
262841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
262941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26302798e883SHong Zhang {
26312798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2632dfbe8321SBarry Smith   PetscErrorCode    ierr;
2633d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26343649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2635ffe4fb16SHong Zhang   Vec               bb1;
26363649974fSBarry Smith   const PetscScalar *b;
2637ffe4fb16SHong Zhang 
2638ffe4fb16SHong Zhang   PetscFunctionBegin;
2639e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2640e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2641ffe4fb16SHong Zhang 
2642a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
264341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2644a2b30743SBarry Smith     PetscFunctionReturn(0);
2645a2b30743SBarry Smith   }
2646a2b30743SBarry Smith 
2647ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2648ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
264941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2650ffe4fb16SHong Zhang       its--;
2651ffe4fb16SHong Zhang     }
2652ffe4fb16SHong Zhang 
2653ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2654ffe4fb16SHong Zhang     while (its--) {
2655ffe4fb16SHong Zhang 
2656ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2657ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2658ffe4fb16SHong Zhang 
2659ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26601ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26611ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2662ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26631ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2664ffe4fb16SHong Zhang 
2665efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2666ffe4fb16SHong Zhang 
2667ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26681ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
26693649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2670ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
26711ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2672ffe4fb16SHong Zhang 
2673ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2674fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2675ffe4fb16SHong Zhang 
2676ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26771ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2678a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2679ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2680ffe4fb16SHong Zhang 
2681ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2682ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2683ffe4fb16SHong Zhang 
2684ffe4fb16SHong Zhang       /* local diagonal sweep */
268541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2686ffe4fb16SHong Zhang     }
26876bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2688fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
268941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2690fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
269141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2692fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2693fa22f6d0SBarry Smith     Vec               xx1;
2694ace3abfcSBarry Smith     PetscBool         hasop;
269520f1ed55SBarry Smith     const PetscScalar *diag;
2696887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
269720f1ed55SBarry Smith     PetscInt          i,n;
2698fa22f6d0SBarry Smith 
2699fa22f6d0SBarry Smith     if (!mat->xx1) {
2700fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2701fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2702fa22f6d0SBarry Smith     }
2703fa22f6d0SBarry Smith     xx1 = mat->xx1;
2704fa22f6d0SBarry Smith     bb1 = mat->bb1;
2705fa22f6d0SBarry Smith 
270641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2707fa22f6d0SBarry Smith 
2708fa22f6d0SBarry Smith     if (!mat->diag) {
2709effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27102a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2711fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2712fa22f6d0SBarry Smith     }
2713fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2714fa22f6d0SBarry Smith 
2715fa22f6d0SBarry Smith     if (hasop) {
2716fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2717887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
271820f1ed55SBarry Smith     } else {
271920f1ed55SBarry Smith       /*
272020f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
272120f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2722887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
272320f1ed55SBarry Smith       */
272420f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27253649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27263649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
272720f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
272820f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2729887ee2caSBarry Smith       if (omega == 1.0) {
273026fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
273120f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2732887ee2caSBarry Smith       } else {
273326fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2734887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2735887ee2caSBarry Smith       }
273620f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27373649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27383649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
273920f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
274020f1ed55SBarry Smith     }
2741fa22f6d0SBarry Smith 
2742fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2743fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2744fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2745fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2746fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2747fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2748fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2749fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2750fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2751fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2752effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2753fa22f6d0SBarry Smith 
2754fa22f6d0SBarry Smith     /* local sweep */
275541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2756fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2757f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2758ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2759ffe4fb16SHong Zhang }
2760ffe4fb16SHong Zhang 
2761ffe4fb16SHong Zhang #undef __FUNCT__
276241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
276341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2764ffe4fb16SHong Zhang {
2765ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2766dfbe8321SBarry Smith   PetscErrorCode ierr;
27672798e883SHong Zhang   Vec            lvec1,bb1;
27682798e883SHong Zhang 
27692798e883SHong Zhang   PetscFunctionBegin;
2770e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2771e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
27722798e883SHong Zhang 
2773c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
27742798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
277541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
27762798e883SHong Zhang       its--;
27772798e883SHong Zhang     }
27782798e883SHong Zhang 
27792798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
27802798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
27812798e883SHong Zhang     while (its--) {
2782ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27832798e883SHong Zhang 
27842798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
27852798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2786efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
27872798e883SHong Zhang 
2788ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27892798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2790ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27912798e883SHong Zhang 
27922798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2793efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
27942798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
27952798e883SHong Zhang 
2796ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
27972798e883SHong Zhang 
2798c14dc6b6SHong Zhang       /* diagonal sweep */
279941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
28002798e883SHong Zhang     }
28016bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
28026bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
28036bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
28042798e883SHong Zhang   PetscFunctionReturn(0);
28052798e883SHong Zhang }
28062798e883SHong Zhang 
2807dfb205c3SBarry Smith #undef __FUNCT__
2808dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays"
2809dfb205c3SBarry Smith /*@
2810dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2811dfb205c3SBarry Smith          CSR format the local rows.
2812dfb205c3SBarry Smith 
2813dfb205c3SBarry Smith    Collective on MPI_Comm
2814dfb205c3SBarry Smith 
2815dfb205c3SBarry Smith    Input Parameters:
2816dfb205c3SBarry Smith +  comm - MPI communicator
2817dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2818dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2819dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2820dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2821dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2822dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2823dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2824dfb205c3SBarry Smith .   i - row indices
2825dfb205c3SBarry Smith .   j - column indices
2826dfb205c3SBarry Smith -   a - matrix values
2827dfb205c3SBarry Smith 
2828dfb205c3SBarry Smith    Output Parameter:
2829dfb205c3SBarry Smith .   mat - the matrix
2830dfb205c3SBarry Smith 
2831dfb205c3SBarry Smith    Level: intermediate
2832dfb205c3SBarry Smith 
2833dfb205c3SBarry Smith    Notes:
2834dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2835dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2836dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2837dfb205c3SBarry Smith 
2838dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2839dfb205c3SBarry Smith 
2840dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2841dfb205c3SBarry Smith 
2842dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
284369b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2844dfb205c3SBarry Smith @*/
28457087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2846dfb205c3SBarry Smith {
2847dfb205c3SBarry Smith   PetscErrorCode ierr;
2848dfb205c3SBarry Smith 
2849dfb205c3SBarry Smith 
2850dfb205c3SBarry Smith   PetscFunctionBegin;
2851f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2852dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2853dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2854dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2855dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2856dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2857dfb205c3SBarry Smith   PetscFunctionReturn(0);
2858dfb205c3SBarry Smith }
2859dfb205c3SBarry Smith 
2860dfb205c3SBarry Smith 
2861dfb205c3SBarry Smith #undef __FUNCT__
2862dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR"
2863dfb205c3SBarry Smith /*@C
2864dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2865dfb205c3SBarry Smith    (the default parallel PETSc format).
2866dfb205c3SBarry Smith 
2867dfb205c3SBarry Smith    Collective on MPI_Comm
2868dfb205c3SBarry Smith 
2869dfb205c3SBarry Smith    Input Parameters:
28701c4f3114SJed Brown +  B - the matrix
2871dfb205c3SBarry Smith .  bs - the block size
2872dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2873dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2874dfb205c3SBarry Smith -  v - optional values in the matrix
2875dfb205c3SBarry Smith 
2876dfb205c3SBarry Smith    Level: developer
2877dfb205c3SBarry Smith 
2878dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2879dfb205c3SBarry Smith 
288069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2881dfb205c3SBarry Smith @*/
28827087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2883dfb205c3SBarry Smith {
28844ac538c5SBarry Smith   PetscErrorCode ierr;
2885dfb205c3SBarry Smith 
2886dfb205c3SBarry Smith   PetscFunctionBegin;
28874ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2888dfb205c3SBarry Smith   PetscFunctionReturn(0);
2889dfb205c3SBarry Smith }
2890dfb205c3SBarry Smith 
2891de4b53ebSHong Zhang #undef __FUNCT__
289210c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ"
289310c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28944dcd73b1SHong Zhang {
28954dcd73b1SHong Zhang   PetscErrorCode ierr;
289610c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
289710c56fdeSHong Zhang   PetscInt       *indx;
289810c56fdeSHong Zhang   PetscScalar    *values;
2899dfb205c3SBarry Smith 
29004dcd73b1SHong Zhang   PetscFunctionBegin;
29014dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
290210c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
290310c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
290410c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
290510c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
29064dcd73b1SHong Zhang 
290710c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
290810c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
290910c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
291010c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
291110c56fdeSHong Zhang     }
291210c56fdeSHong Zhang     /* Check sum(n) = Nbs */
291310c56fdeSHong Zhang     ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
291410c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
291510c56fdeSHong Zhang 
291610c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
291710c56fdeSHong Zhang     rstart -= mbs;
29184dcd73b1SHong Zhang 
29194dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
292010c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
2921e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
292210c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
29234dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
29244dcd73b1SHong Zhang       nnz = nnz/bs;
29254dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
29264dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
29274dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
29284dcd73b1SHong Zhang     }
2929e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
29304dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
29314dcd73b1SHong Zhang 
29324dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
293310c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
29344dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
29354dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
29364dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
29374dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29384dcd73b1SHong Zhang   }
29394dcd73b1SHong Zhang 
294010c56fdeSHong Zhang   /* numeric phase */
29414dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
294210c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
29434dcd73b1SHong Zhang 
2944e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
29454dcd73b1SHong Zhang   for (i=0; i<m; i++) {
29464dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29474dcd73b1SHong Zhang     Ii   = i + rstart;
294810c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
29494dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29504dcd73b1SHong Zhang   }
2951e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
295210c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
295310c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29544dcd73b1SHong Zhang   PetscFunctionReturn(0);
29554dcd73b1SHong Zhang }
2956