1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 226214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 236214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 246214f412SHong Zhang #endif 25a30f8f8cSSatish Balay 264a2ae208SSatish Balay #undef __FUNCT__ 274a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 287087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 29a30f8f8cSSatish Balay { 30f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 31dfbe8321SBarry Smith PetscErrorCode ierr; 32a30f8f8cSSatish Balay 33a30f8f8cSSatish Balay PetscFunctionBegin; 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 35a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 36a30f8f8cSSatish Balay PetscFunctionReturn(0); 37a30f8f8cSSatish Balay } 38a30f8f8cSSatish Balay 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 417087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 53a30f8f8cSSatish Balay { \ 54a30f8f8cSSatish Balay \ 55a30f8f8cSSatish Balay brow = row/bs; \ 56a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 57a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 58a30f8f8cSSatish Balay bcol = col/bs; \ 59a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 60a30f8f8cSSatish Balay low = 0; high = nrow; \ 61a30f8f8cSSatish Balay while (high-low > 3) { \ 62a30f8f8cSSatish Balay t = (low+high)/2; \ 63a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 64a30f8f8cSSatish Balay else low = t; \ 65a30f8f8cSSatish Balay } \ 66a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 67a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 68a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 69a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 70a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 71a30f8f8cSSatish Balay else *bap = value; \ 72a30f8f8cSSatish Balay goto a_noinsert; \ 73a30f8f8cSSatish Balay } \ 74a30f8f8cSSatish Balay } \ 75a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 76e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 77fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 78a30f8f8cSSatish Balay N = nrow++ - 1; \ 79a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 80a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 81a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 82a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 83a30f8f8cSSatish Balay } \ 84a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 85a30f8f8cSSatish Balay rp[_i] = bcol; \ 86a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 87e56f5c9eSBarry Smith A->nonzerostate++;\ 88a30f8f8cSSatish Balay a_noinsert:; \ 89a30f8f8cSSatish Balay ailen[brow] = nrow; \ 90a30f8f8cSSatish Balay } 91e5e170daSBarry Smith 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay brow = row/bs; \ 95a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 96a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 97a30f8f8cSSatish Balay bcol = col/bs; \ 98a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 99a30f8f8cSSatish Balay low = 0; high = nrow; \ 100a30f8f8cSSatish Balay while (high-low > 3) { \ 101a30f8f8cSSatish Balay t = (low+high)/2; \ 102a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 103a30f8f8cSSatish Balay else low = t; \ 104a30f8f8cSSatish Balay } \ 105a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 106a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 107a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 108a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 109a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 110a30f8f8cSSatish Balay else *bap = value; \ 111a30f8f8cSSatish Balay goto b_noinsert; \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 115e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 116fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 117a30f8f8cSSatish Balay N = nrow++ - 1; \ 118a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 119a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 120a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 122a30f8f8cSSatish Balay } \ 123a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 124a30f8f8cSSatish Balay rp[_i] = bcol; \ 125a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 126e56f5c9eSBarry Smith B->nonzerostate++;\ 127a30f8f8cSSatish Balay b_noinsert:; \ 128a30f8f8cSSatish Balay bilen[brow] = nrow; \ 129a30f8f8cSSatish Balay } 130a30f8f8cSSatish Balay 131a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 132a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 133a30f8f8cSSatish Balay */ 1344a2ae208SSatish Balay #undef __FUNCT__ 135dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 136dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 137a30f8f8cSSatish Balay { 138a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 139a30f8f8cSSatish Balay MatScalar value; 140ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 141dfbe8321SBarry Smith PetscErrorCode ierr; 1421302d50aSBarry Smith PetscInt i,j,row,col; 143d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 144d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 145d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 146a30f8f8cSSatish Balay 147a30f8f8cSSatish Balay /* Some Variables required in the macro */ 148a30f8f8cSSatish Balay Mat A = baij->A; 149a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1501302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 151a30f8f8cSSatish Balay MatScalar *aa =a->a; 152a30f8f8cSSatish Balay 153a30f8f8cSSatish Balay Mat B = baij->B; 154a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1551302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 156a30f8f8cSSatish Balay MatScalar *ba =b->a; 157a30f8f8cSSatish Balay 1581302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1591302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 160a30f8f8cSSatish Balay MatScalar *ap,*bap; 161a30f8f8cSSatish Balay 162a30f8f8cSSatish Balay /* for stash */ 1630298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1640298fd71SBarry Smith MatScalar *v_loc = NULL; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (!baij->donotstash) { 16859ffdab8SBarry Smith if (n > baij->n_loc) { 16959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 171785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 172785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 17326fbe8dcSKarl Rupp 17459ffdab8SBarry Smith baij->n_loc = n; 17559ffdab8SBarry Smith } 17659ffdab8SBarry Smith in_loc = baij->in_loc; 17759ffdab8SBarry Smith v_loc = baij->v_loc; 178a30f8f8cSSatish Balay } 179a30f8f8cSSatish Balay 180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 181a30f8f8cSSatish Balay if (im[i] < 0) continue; 1822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 183e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 184a30f8f8cSSatish Balay #endif 185a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 186a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 187a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18801b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18901b2bd88SHong Zhang if (a->ignore_ltriangular) { 19001b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19126fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19201b2bd88SHong Zhang } 193a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 194a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 195a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 196a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 197db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 198db4deed7SKarl Rupp else value = v[i+j*m]; 199a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 200a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 201a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 203cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 204a30f8f8cSSatish Balay #endif 205a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 206a30f8f8cSSatish Balay if (mat->was_assembled) { 207a30f8f8cSSatish Balay if (!baij->colmap) { 208ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 209a30f8f8cSSatish Balay } 210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 211a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21271730473SSatish Balay col = col - 1; 213a30f8f8cSSatish Balay #else 21471730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 215a30f8f8cSSatish Balay #endif 216a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 217ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 218a30f8f8cSSatish Balay col = in[j]; 219a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 220a30f8f8cSSatish Balay B = baij->B; 221a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 222a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 223a30f8f8cSSatish Balay ba = b->a; 22471730473SSatish Balay } else col += in[j]%bs; 225a30f8f8cSSatish Balay } else col = in[j]; 226db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 227db4deed7SKarl Rupp else value = v[i+j*m]; 228a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 229a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 230a30f8f8cSSatish Balay } 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } else { /* off processor entry */ 2334cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 234a30f8f8cSSatish Balay if (!baij->donotstash) { 2355080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++) { 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray =baij->barray; 261ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if (!barray) { 269785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 281e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286f3f98c53SJed Brown if (im[i] > in[j]) { 287f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 31226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 314cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3150880e062SHong Zhang #endif 3160880e062SHong Zhang else { 3170880e062SHong Zhang if (mat->was_assembled) { 3180880e062SHong Zhang if (!baij->colmap) { 319ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3200880e062SHong Zhang } 3210880e062SHong Zhang 3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3241302d50aSBarry Smith { PetscInt data; 3250880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 326e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang } 3280880e062SHong Zhang #else 329e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang #endif 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3330880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3340880e062SHong Zhang col = (col - 1)/bs; 3350880e062SHong Zhang #else 3360880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3370880e062SHong Zhang #endif 3380880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 339ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3400880e062SHong Zhang col = in[j]; 3410880e062SHong Zhang } 34226fbe8dcSKarl Rupp } else col = in[j]; 343e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3440880e062SHong Zhang } 3450880e062SHong Zhang } 3460880e062SHong Zhang } else { 3474cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3480880e062SHong Zhang if (!baij->donotstash) { 3490880e062SHong Zhang if (roworiented) { 3500880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3510880e062SHong Zhang } else { 3520880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang PetscFunctionReturn(0); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 3604a2ae208SSatish Balay #undef __FUNCT__ 3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 363a30f8f8cSSatish Balay { 364f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3656849ba73SBarry Smith PetscErrorCode ierr; 366d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 367d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 368a30f8f8cSSatish Balay 369a30f8f8cSSatish Balay PetscFunctionBegin; 370a30f8f8cSSatish Balay for (i=0; i<m; i++) { 371e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 372e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 373a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 374a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 375a30f8f8cSSatish Balay for (j=0; j<n; j++) { 376e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 377e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 378a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 379a30f8f8cSSatish Balay col = idxn[j] - bscstart; 380c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } else { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 387a30f8f8cSSatish Balay data--; 388a30f8f8cSSatish Balay #else 389a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 392a30f8f8cSSatish Balay else { 393a30f8f8cSSatish Balay col = data + idxn[j]%bs; 394e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay PetscFunctionReturn(0); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 4034a2ae208SSatish Balay #undef __FUNCT__ 4044a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 405dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 406a30f8f8cSSatish Balay { 407a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 408dfbe8321SBarry Smith PetscErrorCode ierr; 409a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 410a30f8f8cSSatish Balay 411a30f8f8cSSatish Balay PetscFunctionBegin; 412a30f8f8cSSatish Balay if (baij->size == 1) { 413a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 414a30f8f8cSSatish Balay } else { 415a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 416785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 417a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 418a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 419a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 421ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4228f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 423a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4240b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4250b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4260b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4270b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 428899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 429d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4300b8dc8d2SHong Zhang MatScalar *v; 4310b8dc8d2SHong Zhang 432dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 433d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4340b8dc8d2SHong Zhang /* Amat */ 4350b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4360b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4370b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4380b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4390b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4400b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4410b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4420b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4430b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4440b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4450b8dc8d2SHong Zhang /* non-diagonal block */ 4460b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4470b8dc8d2SHong Zhang } 4480b8dc8d2SHong Zhang } 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang /* Bmat */ 4520b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4530b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4540b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4550b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4560b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4570b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4580b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4590b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4600b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4610b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4620b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4630b8dc8d2SHong Zhang } 4640b8dc8d2SHong Zhang } 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 467ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4680b8dc8d2SHong Zhang *norm = 0.0; 469d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4700b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4710b8dc8d2SHong Zhang } 47274ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 473f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 474a30f8f8cSSatish Balay } 475a30f8f8cSSatish Balay PetscFunctionReturn(0); 476a30f8f8cSSatish Balay } 477a30f8f8cSSatish Balay 4784a2ae208SSatish Balay #undef __FUNCT__ 4794a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 480dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 481a30f8f8cSSatish Balay { 482a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 483dfbe8321SBarry Smith PetscErrorCode ierr; 4841302d50aSBarry Smith PetscInt nstash,reallocs; 485a30f8f8cSSatish Balay InsertMode addv; 486a30f8f8cSSatish Balay 487a30f8f8cSSatish Balay PetscFunctionBegin; 48826fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 489a30f8f8cSSatish Balay 490a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 491ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 492ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 493a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 494a30f8f8cSSatish Balay 495d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4961e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 497a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4981e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 499a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5001e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 501a30f8f8cSSatish Balay PetscFunctionReturn(0); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay 5044a2ae208SSatish Balay #undef __FUNCT__ 5054a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 506dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 507a30f8f8cSSatish Balay { 508a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 509a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5106849ba73SBarry Smith PetscErrorCode ierr; 51113f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 512e44c0bd4SBarry Smith PetscInt *row,*col; 513ace3abfcSBarry Smith PetscBool other_disassembled; 51413f74950SBarry Smith PetscMPIInt n; 515ace3abfcSBarry Smith PetscBool r1,r2,r3; 516a30f8f8cSSatish Balay MatScalar *val; 517a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 518a30f8f8cSSatish Balay 51991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 520a30f8f8cSSatish Balay PetscFunctionBegin; 5214cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 522a30f8f8cSSatish Balay while (1) { 523a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 524a30f8f8cSSatish Balay if (!flg) break; 525a30f8f8cSSatish Balay 526a30f8f8cSSatish Balay for (i=0; i<n;) { 527a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52926fbe8dcSKarl Rupp if (row[j] != rstart) break; 53026fbe8dcSKarl Rupp } 531a30f8f8cSSatish Balay if (j < n) ncols = j-i; 532a30f8f8cSSatish Balay else ncols = n-i; 533a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 534dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 535a30f8f8cSSatish Balay i = j; 536a30f8f8cSSatish Balay } 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 539a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 540a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 541a30f8f8cSSatish Balay restore the original flags */ 542a30f8f8cSSatish Balay r1 = baij->roworiented; 543a30f8f8cSSatish Balay r2 = a->roworiented; 54491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54526fbe8dcSKarl Rupp 546a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 547a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54826fbe8dcSKarl Rupp 54991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 550a30f8f8cSSatish Balay while (1) { 551a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 552a30f8f8cSSatish Balay if (!flg) break; 553a30f8f8cSSatish Balay 554a30f8f8cSSatish Balay for (i=0; i<n;) { 555a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55726fbe8dcSKarl Rupp if (row[j] != rstart) break; 55826fbe8dcSKarl Rupp } 559a30f8f8cSSatish Balay if (j < n) ncols = j-i; 560a30f8f8cSSatish Balay else ncols = n-i; 561dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 562a30f8f8cSSatish Balay i = j; 563a30f8f8cSSatish Balay } 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56626fbe8dcSKarl Rupp 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56926fbe8dcSKarl Rupp 57091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 575a30f8f8cSSatish Balay 576a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 577a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 578a30f8f8cSSatish Balay /* 579a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 580a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 581a30f8f8cSSatish Balay */ 582a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 583ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 584a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 585ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 591a30f8f8cSSatish Balay } 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 59574ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59626fbe8dcSKarl Rupp 597a30f8f8cSSatish Balay baij->rowvalues = 0; 5984f9cfa9eSBarry Smith 5994f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 6004f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 601e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 60209e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 603e56f5c9eSBarry Smith } 604a30f8f8cSSatish Balay PetscFunctionReturn(0); 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay 6077da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat,PetscViewer); 608dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6099804daf3SBarry Smith #include <petscdraw.h> 6104a2ae208SSatish Balay #undef __FUNCT__ 6114a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6126849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 613a30f8f8cSSatish Balay { 614a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 615dfbe8321SBarry Smith PetscErrorCode ierr; 616d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6177da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 618ace3abfcSBarry Smith PetscBool iascii,isdraw; 619b0a32e0cSBarry Smith PetscViewer sviewer; 620f3ef73ceSBarry Smith PetscViewerFormat format; 621a30f8f8cSSatish Balay 622a30f8f8cSSatish Balay PetscFunctionBegin; 623251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 624251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62532077d6dSBarry Smith if (iascii) { 626b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 627456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 628a30f8f8cSSatish Balay MatInfo info; 629ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6317b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6327b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 633a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 634e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 635a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 636e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 637b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6387b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 63907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 640a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 641a30f8f8cSSatish Balay PetscFunctionReturn(0); 642fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 64377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 644a30f8f8cSSatish Balay PetscFunctionReturn(0); 645c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 646c1490034SHong Zhang PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650a30f8f8cSSatish Balay if (isdraw) { 651b0a32e0cSBarry Smith PetscDraw draw; 652ace3abfcSBarry Smith PetscBool isnull; 653b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 654b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay 6577da1fb6eSBarry Smith { 658a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 659a30f8f8cSSatish Balay Mat A; 66065d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 66165d70643SHong Zhang Mat_SeqBAIJ *Bloc; 662d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 663a30f8f8cSSatish Balay MatScalar *a; 6643e219373SBarry Smith const char *matname; 665a30f8f8cSSatish Balay 666f204ca49SKris Buschelman /* Should this be the same type as mat? */ 667ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 668a30f8f8cSSatish Balay if (!rank) { 669f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 670a30f8f8cSSatish Balay } else { 671f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 672a30f8f8cSSatish Balay } 673f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6740298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6752b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6763bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay /* copy over the A part */ 67965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 680a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 681785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 682a30f8f8cSSatish Balay 683a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 684e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 68526fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 686a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 687e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 688a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 689dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 69026fbe8dcSKarl Rupp col++; 69126fbe8dcSKarl Rupp a += bs; 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay /* copy over the B part */ 69665d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69765d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 698a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 699e9f7bc9eSHong Zhang 700e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 70126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 702a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 703a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 704a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 705799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 70626fbe8dcSKarl Rupp col++; 70726fbe8dcSKarl Rupp a += bs; 708a30f8f8cSSatish Balay } 709a30f8f8cSSatish Balay } 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 713a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 714a30f8f8cSSatish Balay /* 715a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 716b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 717a30f8f8cSSatish Balay */ 718b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 719ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 7203e219373SBarry Smith if (!rank) { 721ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 7227da1fb6eSBarry Smith ierr = MatView_SeqSBAIJ_ASCII(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay } 724b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7256bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 726a30f8f8cSSatish Balay } 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 7304a2ae208SSatish Balay #undef __FUNCT__ 7314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 732dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 733a30f8f8cSSatish Balay { 734dfbe8321SBarry Smith PetscErrorCode ierr; 735ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay PetscFunctionBegin; 738251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 739251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 740251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 741251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 74232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 743a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay PetscFunctionReturn(0); 746a30f8f8cSSatish Balay } 747a30f8f8cSSatish Balay 7484a2ae208SSatish Balay #undef __FUNCT__ 7494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 750dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 751a30f8f8cSSatish Balay { 752a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 753dfbe8321SBarry Smith PetscErrorCode ierr; 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay PetscFunctionBegin; 756a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 757d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 758a30f8f8cSSatish Balay #endif 759a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7616bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7626bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 763a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7646bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 765a30f8f8cSSatish Balay #else 76605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 767a30f8f8cSSatish Balay #endif 76805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7706bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7716bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7726bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7766bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7775755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77905b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7806bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7816bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7826bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 783ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 78405b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 785a30f8f8cSSatish Balay #endif 78659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 788899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 789bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 790901853e0SKris Buschelman 791dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 792bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 793bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 794bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 795bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 796bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 7976214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 7986214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 7996214f412SHong Zhang #endif 800a30f8f8cSSatish Balay PetscFunctionReturn(0); 801a30f8f8cSSatish Balay } 802a30f8f8cSSatish Balay 8034a2ae208SSatish Balay #undef __FUNCT__ 804547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 805547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 806547795f9SHong Zhang { 807547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 808547795f9SHong Zhang PetscErrorCode ierr; 809547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 810547795f9SHong Zhang PetscScalar *x,*from; 811547795f9SHong Zhang 812547795f9SHong Zhang PetscFunctionBegin; 813547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 814e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 815547795f9SHong Zhang 816547795f9SHong Zhang /* diagonal part */ 817547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 818547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang /* subdiagonal part */ 821547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 822547795f9SHong Zhang 823547795f9SHong Zhang /* copy x into the vec slvec0 */ 824547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 826547795f9SHong Zhang 827547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 828547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 829547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 830547795f9SHong Zhang 831547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 832547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 833547795f9SHong Zhang /* supperdiagonal part */ 834547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 835547795f9SHong Zhang PetscFunctionReturn(0); 836547795f9SHong Zhang } 837547795f9SHong Zhang 838547795f9SHong Zhang #undef __FUNCT__ 839a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 840dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 841a9d4b620SHong Zhang { 842a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 843dfbe8321SBarry Smith PetscErrorCode ierr; 844d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 845d9ca1df4SBarry Smith PetscScalar *from; 846d9ca1df4SBarry Smith const PetscScalar *x; 847a9d4b620SHong Zhang 848a9d4b620SHong Zhang PetscFunctionBegin; 849a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 850e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 851a9d4b620SHong Zhang 852a9d4b620SHong Zhang /* diagonal part */ 853a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 854fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 855a9d4b620SHong Zhang 856a9d4b620SHong Zhang /* subdiagonal part */ 857a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 858fc165ae2SBarry Smith 859a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8601ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 861d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 862a9d4b620SHong Zhang 863fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 864fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 865d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 866fc165ae2SBarry Smith 867fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 868ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 869a9d4b620SHong Zhang /* supperdiagonal part */ 870a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 871a9d4b620SHong Zhang PetscFunctionReturn(0); 872a9d4b620SHong Zhang } 873a9d4b620SHong Zhang 874a9d4b620SHong Zhang #undef __FUNCT__ 87540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 876dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 877a30f8f8cSSatish Balay { 878a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 879dfbe8321SBarry Smith PetscErrorCode ierr; 8801302d50aSBarry Smith PetscInt nt; 881a30f8f8cSSatish Balay 882a30f8f8cSSatish Balay PetscFunctionBegin; 883a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 884e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 885e7e72b3dSBarry Smith 886a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 887e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 88865d70643SHong Zhang 889ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 890b941877fSHong Zhang /* do diagonal part */ 891b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 892b941877fSHong Zhang /* do supperdiagonal part */ 893ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 894b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 895b941877fSHong Zhang /* do subdiagonal part */ 896b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 897ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 898ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 899a30f8f8cSSatish Balay PetscFunctionReturn(0); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 9024a2ae208SSatish Balay #undef __FUNCT__ 9034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 904dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 905a30f8f8cSSatish Balay { 906de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 907dfbe8321SBarry Smith PetscErrorCode ierr; 908d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 909d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 910d9ca1df4SBarry Smith const PetscScalar *x; 911a9d4b620SHong Zhang 912a9d4b620SHong Zhang PetscFunctionBegin; 913a9d4b620SHong Zhang /* 914ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 9150ec8b6e3SBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT); 916a9d4b620SHong Zhang */ 917a9d4b620SHong Zhang /* diagonal part */ 918a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9192dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 920a9d4b620SHong Zhang 921a9d4b620SHong Zhang /* subdiagonal part */ 922a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 923a9d4b620SHong Zhang 924a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9251ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 926d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 927a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9281ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 929a9d4b620SHong Zhang 930ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 931d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 932ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang /* supperdiagonal part */ 935a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 936a9d4b620SHong Zhang PetscFunctionReturn(0); 937a9d4b620SHong Zhang } 938a9d4b620SHong Zhang 939a9d4b620SHong Zhang #undef __FUNCT__ 940a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 941dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 942a9d4b620SHong Zhang { 943a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 944dfbe8321SBarry Smith PetscErrorCode ierr; 945a30f8f8cSSatish Balay 946a30f8f8cSSatish Balay PetscFunctionBegin; 947ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 948b941877fSHong Zhang /* do diagonal part */ 949b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 950b941877fSHong Zhang /* do supperdiagonal part */ 951ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 952de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 953de8b6608SHong Zhang 954b941877fSHong Zhang /* do subdiagonal part */ 955a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 956ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 957ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 958a30f8f8cSSatish Balay PetscFunctionReturn(0); 959a30f8f8cSSatish Balay } 960a30f8f8cSSatish Balay 961a30f8f8cSSatish Balay /* 962a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 963a30f8f8cSSatish Balay diagonal block 964a30f8f8cSSatish Balay */ 9654a2ae208SSatish Balay #undef __FUNCT__ 9664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 967dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 968a30f8f8cSSatish Balay { 969a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 970dfbe8321SBarry Smith PetscErrorCode ierr; 971a30f8f8cSSatish Balay 972a30f8f8cSSatish Balay PetscFunctionBegin; 973e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 974a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 975a30f8f8cSSatish Balay PetscFunctionReturn(0); 976a30f8f8cSSatish Balay } 977a30f8f8cSSatish Balay 9784a2ae208SSatish Balay #undef __FUNCT__ 9794a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 980f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 981a30f8f8cSSatish Balay { 982a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 983dfbe8321SBarry Smith PetscErrorCode ierr; 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay PetscFunctionBegin; 986f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 987f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 988a30f8f8cSSatish Balay PetscFunctionReturn(0); 989a30f8f8cSSatish Balay } 990a30f8f8cSSatish Balay 9914a2ae208SSatish Balay #undef __FUNCT__ 9924a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9931302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 994a30f8f8cSSatish Balay { 995d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 996d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 997d0d4cfc2SHong Zhang PetscErrorCode ierr; 998d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 999d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1000899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1001d0d4cfc2SHong Zhang 1002a30f8f8cSSatish Balay PetscFunctionBegin; 1003e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1004d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1005d0d4cfc2SHong Zhang 1006d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1007d0d4cfc2SHong Zhang /* 1008d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1009d0d4cfc2SHong Zhang */ 1010d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1011d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1012d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1013d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1014d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 101526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1016d0d4cfc2SHong Zhang } 1017dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1018d0d4cfc2SHong Zhang } 1019d0d4cfc2SHong Zhang 1020e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1021d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1022d0d4cfc2SHong Zhang 1023d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1024d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1025d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1026d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1027d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1028d0d4cfc2SHong Zhang nztot = nzA + nzB; 1029d0d4cfc2SHong Zhang 1030d0d4cfc2SHong Zhang cmap = mat->garray; 1031d0d4cfc2SHong Zhang if (v || idx) { 1032d0d4cfc2SHong Zhang if (nztot) { 1033d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1034d0d4cfc2SHong Zhang PetscInt imark = -1; 1035d0d4cfc2SHong Zhang if (v) { 1036d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1037d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1038d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1039d0d4cfc2SHong Zhang else break; 1040d0d4cfc2SHong Zhang } 1041d0d4cfc2SHong Zhang imark = i; 1042d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1043d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1044d0d4cfc2SHong Zhang } 1045d0d4cfc2SHong Zhang if (idx) { 1046d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1047d0d4cfc2SHong Zhang if (imark > -1) { 1048d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1049d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1050d0d4cfc2SHong Zhang } 1051d0d4cfc2SHong Zhang } else { 1052d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 105326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1054d0d4cfc2SHong Zhang else break; 1055d0d4cfc2SHong Zhang } 1056d0d4cfc2SHong Zhang imark = i; 1057d0d4cfc2SHong Zhang } 1058d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1059d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1060d0d4cfc2SHong Zhang } 1061d0d4cfc2SHong Zhang } else { 1062d0d4cfc2SHong Zhang if (idx) *idx = 0; 1063d0d4cfc2SHong Zhang if (v) *v = 0; 1064d0d4cfc2SHong Zhang } 1065d0d4cfc2SHong Zhang } 1066d0d4cfc2SHong Zhang *nz = nztot; 1067d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1068d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1069a30f8f8cSSatish Balay PetscFunctionReturn(0); 1070a30f8f8cSSatish Balay } 1071a30f8f8cSSatish Balay 10724a2ae208SSatish Balay #undef __FUNCT__ 10734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10741302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1075a30f8f8cSSatish Balay { 1076a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1077a30f8f8cSSatish Balay 1078a30f8f8cSSatish Balay PetscFunctionBegin; 1079e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1080a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1081a30f8f8cSSatish Balay PetscFunctionReturn(0); 1082a30f8f8cSSatish Balay } 1083a30f8f8cSSatish Balay 10844a2ae208SSatish Balay #undef __FUNCT__ 1085d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1086d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1087d0d4cfc2SHong Zhang { 1088d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1089d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1090d0d4cfc2SHong Zhang 1091d0d4cfc2SHong Zhang PetscFunctionBegin; 1092d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1093d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1094d0d4cfc2SHong Zhang } 1095d0d4cfc2SHong Zhang #undef __FUNCT__ 1096d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1097d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1098d0d4cfc2SHong Zhang { 1099d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1100d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1101d0d4cfc2SHong Zhang 1102d0d4cfc2SHong Zhang PetscFunctionBegin; 1103d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1104d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1105d0d4cfc2SHong Zhang } 1106d0d4cfc2SHong Zhang 1107d0d4cfc2SHong Zhang #undef __FUNCT__ 110899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111099cafbc1SBarry Smith { 111199cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111299cafbc1SBarry Smith PetscErrorCode ierr; 111399cafbc1SBarry Smith 111499cafbc1SBarry Smith PetscFunctionBegin; 111599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111799cafbc1SBarry Smith PetscFunctionReturn(0); 111899cafbc1SBarry Smith } 111999cafbc1SBarry Smith 112099cafbc1SBarry Smith #undef __FUNCT__ 112199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112399cafbc1SBarry Smith { 112499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 112599cafbc1SBarry Smith PetscErrorCode ierr; 112699cafbc1SBarry Smith 112799cafbc1SBarry Smith PetscFunctionBegin; 112899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113099cafbc1SBarry Smith PetscFunctionReturn(0); 113199cafbc1SBarry Smith } 113299cafbc1SBarry Smith 113399cafbc1SBarry Smith #undef __FUNCT__ 1134*8f46ffcaSHong Zhang #define __FUNCT__ "MatGetSubMatrix_MPISBAIJ" 1135*8f46ffcaSHong Zhang PetscErrorCode MatGetSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 1136*8f46ffcaSHong Zhang { 1137*8f46ffcaSHong Zhang PetscErrorCode ierr; 1138*8f46ffcaSHong Zhang IS iscol_local; 1139*8f46ffcaSHong Zhang PetscInt csize; 1140*8f46ffcaSHong Zhang 1141*8f46ffcaSHong Zhang PetscFunctionBegin; 1142*8f46ffcaSHong Zhang MPI_Comm comm; 1143*8f46ffcaSHong Zhang PetscMPIInt rank; 1144*8f46ffcaSHong Zhang ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 1145*8f46ffcaSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1146*8f46ffcaSHong Zhang 1147*8f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1148*8f46ffcaSHong Zhang if (call == MAT_REUSE_MATRIX) { 1149*8f46ffcaSHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1150*8f46ffcaSHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1151*8f46ffcaSHong Zhang } else { 1152*8f46ffcaSHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1153*8f46ffcaSHong Zhang 1154*8f46ffcaSHong Zhang { /* check if isrow == iscol_local Note: isrow is distributed, but iscol_local is locally owned! */ 1155*8f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 1156*8f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 1157*8f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 1158*8f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 1159*8f46ffcaSHong Zhang if (sz1 > sz2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 1160*8f46ffcaSHong Zhang 1161*8f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 1162*8f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 1163*8f46ffcaSHong Zhang 1164*8f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 1165*8f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1166*8f46ffcaSHong Zhang ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr); 1167*8f46ffcaSHong Zhang ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr); 1168*8f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 1169*8f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 1170*8f46ffcaSHong Zhang 1171*8f46ffcaSHong Zhang nmatch=0; 1172*8f46ffcaSHong Zhang k = 0; 1173*8f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 1174*8f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 1175*8f46ffcaSHong Zhang if (a1[i] == a2[j]) { 1176*8f46ffcaSHong Zhang k = j; nmatch++; 1177*8f46ffcaSHong Zhang if (rank == 1) printf("match %d\n",a2[j]); 1178*8f46ffcaSHong Zhang break; 1179*8f46ffcaSHong Zhang } 1180*8f46ffcaSHong Zhang } 1181*8f46ffcaSHong Zhang } 1182*8f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 1183*8f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 1184*8f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 1185*8f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 1186*8f46ffcaSHong Zhang if (nmatch < sz1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 1187*8f46ffcaSHong Zhang } 1188*8f46ffcaSHong Zhang } 1189*8f46ffcaSHong Zhang 1190*8f46ffcaSHong Zhang /* now call MatGetSubMatrix_MPIBAIJ() */ 1191*8f46ffcaSHong Zhang ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); //csize: global iscol size 1192*8f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1193*8f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 1194*8f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 1195*8f46ffcaSHong Zhang } 1196*8f46ffcaSHong Zhang PetscFunctionReturn(0); 1197*8f46ffcaSHong Zhang } 1198*8f46ffcaSHong Zhang 1199*8f46ffcaSHong Zhang #undef __FUNCT__ 12004a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1201dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1202a30f8f8cSSatish Balay { 1203a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1204dfbe8321SBarry Smith PetscErrorCode ierr; 1205a30f8f8cSSatish Balay 1206a30f8f8cSSatish Balay PetscFunctionBegin; 1207a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1208a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay PetscFunctionReturn(0); 1210a30f8f8cSSatish Balay } 1211a30f8f8cSSatish Balay 12124a2ae208SSatish Balay #undef __FUNCT__ 12134a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1214dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1215a30f8f8cSSatish Balay { 1216a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1217a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1218dfbe8321SBarry Smith PetscErrorCode ierr; 1219a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1220a30f8f8cSSatish Balay 1221a30f8f8cSSatish Balay PetscFunctionBegin; 1222d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 122326fbe8dcSKarl Rupp 1224a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 122526fbe8dcSKarl Rupp 1226a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1227a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 122826fbe8dcSKarl Rupp 1229a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 123026fbe8dcSKarl Rupp 1231a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1232a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1233a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1234a30f8f8cSSatish Balay info->nz_used = isend[0]; 1235a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1236a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1237a30f8f8cSSatish Balay info->memory = isend[3]; 1238a30f8f8cSSatish Balay info->mallocs = isend[4]; 1239a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1240ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 124126fbe8dcSKarl Rupp 1242a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1243a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1244a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1245a30f8f8cSSatish Balay info->memory = irecv[3]; 1246a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1247a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1248ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 124926fbe8dcSKarl Rupp 1250a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1251a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1252a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1253a30f8f8cSSatish Balay info->memory = irecv[3]; 1254a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1255f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1256a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1257a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1258a30f8f8cSSatish Balay info->factor_mallocs = 0; 1259a30f8f8cSSatish Balay PetscFunctionReturn(0); 1260a30f8f8cSSatish Balay } 1261a30f8f8cSSatish Balay 12624a2ae208SSatish Balay #undef __FUNCT__ 12634a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1264ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1265a30f8f8cSSatish Balay { 1266a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1267d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1268dfbe8321SBarry Smith PetscErrorCode ierr; 1269a30f8f8cSSatish Balay 1270a30f8f8cSSatish Balay PetscFunctionBegin; 1271e98b92d7SKris Buschelman switch (op) { 1272512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1273e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 127428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1275a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1276e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12774e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12784e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1279e98b92d7SKris Buschelman break; 1280e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12814e0d8c25SBarry Smith a->roworiented = flg; 128226fbe8dcSKarl Rupp 12834e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12844e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1285e98b92d7SKris Buschelman break; 12864e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1287290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1288e98b92d7SKris Buschelman break; 1289e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12904e0d8c25SBarry Smith a->donotstash = flg; 1291e98b92d7SKris Buschelman break; 1292e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12934e0d8c25SBarry Smith a->ht_flag = flg; 1294e98b92d7SKris Buschelman break; 12959a4540c5SBarry Smith case MAT_HERMITIAN: 1296e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1297eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 129826fbe8dcSKarl Rupp 1299547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1300eeffb40dSHong Zhang break; 1301ffa07934SHong Zhang case MAT_SPD: 1302ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1303ffa07934SHong Zhang A->spd = flg; 1304ffa07934SHong Zhang if (flg) { 1305ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1306ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1307ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1308ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1309ffa07934SHong Zhang } 1310ffa07934SHong Zhang break; 131177e54ba9SKris Buschelman case MAT_SYMMETRIC: 1312eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1313eeffb40dSHong Zhang break; 131477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1315eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1316eeffb40dSHong Zhang break; 13179a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1318e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1319290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 132077e54ba9SKris Buschelman break; 1321d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 13224e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1323d0d4cfc2SHong Zhang break; 1324d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 13254e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1326d0d4cfc2SHong Zhang break; 1327d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 13284e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1329d0d4cfc2SHong Zhang break; 1330e98b92d7SKris Buschelman default: 1331e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1332a30f8f8cSSatish Balay } 1333a30f8f8cSSatish Balay PetscFunctionReturn(0); 1334a30f8f8cSSatish Balay } 1335a30f8f8cSSatish Balay 13364a2ae208SSatish Balay #undef __FUNCT__ 13378115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1338fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1339a30f8f8cSSatish Balay { 1340dfbe8321SBarry Smith PetscErrorCode ierr; 13416e111a19SKarl Rupp 1342a30f8f8cSSatish Balay PetscFunctionBegin; 1343815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1344999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1345fc4dec0aSBarry Smith } 13468115998fSBarry Smith PetscFunctionReturn(0); 1347a30f8f8cSSatish Balay } 1348a30f8f8cSSatish Balay 13494a2ae208SSatish Balay #undef __FUNCT__ 13504a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1351dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1352a30f8f8cSSatish Balay { 1353a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1354a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1355dfbe8321SBarry Smith PetscErrorCode ierr; 13565e90f9d9SHong Zhang PetscInt nv,m,n; 1357ace3abfcSBarry Smith PetscBool flg; 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay PetscFunctionBegin; 1360a30f8f8cSSatish Balay if (ll != rr) { 1361b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1362e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1363a30f8f8cSSatish Balay } 1364b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1365b3bf805bSHong Zhang 13665e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1367e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1368b3bf805bSHong Zhang 13695e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1370e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13715e90f9d9SHong Zhang 1372ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13735e90f9d9SHong Zhang 13745e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 13750298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 13765e90f9d9SHong Zhang 13775e90f9d9SHong Zhang /* scale the diagonal part */ 1378a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1379a30f8f8cSSatish Balay 13805e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1381ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13820298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay PetscFunctionReturn(0); 1384a30f8f8cSSatish Balay } 1385a30f8f8cSSatish Balay 13864a2ae208SSatish Balay #undef __FUNCT__ 13874a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1388dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1389a30f8f8cSSatish Balay { 1390f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1391dfbe8321SBarry Smith PetscErrorCode ierr; 1392a30f8f8cSSatish Balay 1393a30f8f8cSSatish Balay PetscFunctionBegin; 1394a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay PetscFunctionReturn(0); 1396a30f8f8cSSatish Balay } 1397a30f8f8cSSatish Balay 13986849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1399a30f8f8cSSatish Balay 14004a2ae208SSatish Balay #undef __FUNCT__ 14014a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1402ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1403a30f8f8cSSatish Balay { 1404a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1405a30f8f8cSSatish Balay Mat a,b,c,d; 1406ace3abfcSBarry Smith PetscBool flg; 1407dfbe8321SBarry Smith PetscErrorCode ierr; 1408a30f8f8cSSatish Balay 1409a30f8f8cSSatish Balay PetscFunctionBegin; 1410a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1411a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1412a30f8f8cSSatish Balay 1413a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1414abc0a331SBarry Smith if (flg) { 1415a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1416a30f8f8cSSatish Balay } 1417ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1418a30f8f8cSSatish Balay PetscFunctionReturn(0); 1419a30f8f8cSSatish Balay } 1420a30f8f8cSSatish Balay 14214a2ae208SSatish Balay #undef __FUNCT__ 14223c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14233c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14243c896bc6SHong Zhang { 14253c896bc6SHong Zhang PetscErrorCode ierr; 14263c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14273c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 14283c896bc6SHong Zhang 14293c896bc6SHong Zhang PetscFunctionBegin; 14303c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14313c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1432d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14333c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1434d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14353c896bc6SHong Zhang } else { 14363c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14373c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14383c896bc6SHong Zhang } 14393c896bc6SHong Zhang PetscFunctionReturn(0); 14403c896bc6SHong Zhang } 14413c896bc6SHong Zhang 14423c896bc6SHong Zhang #undef __FUNCT__ 14434994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 14444994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1445273d9f13SBarry Smith { 1446dfbe8321SBarry Smith PetscErrorCode ierr; 1447273d9f13SBarry Smith 1448273d9f13SBarry Smith PetscFunctionBegin; 1449535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1450273d9f13SBarry Smith PetscFunctionReturn(0); 1451273d9f13SBarry Smith } 1452a5e6ed63SBarry Smith 14534fe895cdSHong Zhang #undef __FUNCT__ 14544fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14554fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14564fe895cdSHong Zhang { 14574fe895cdSHong Zhang PetscErrorCode ierr; 14584fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 14594fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14604fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14614fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14624fe895cdSHong Zhang 14634fe895cdSHong Zhang PetscFunctionBegin; 14644fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14654fe895cdSHong Zhang PetscScalar alpha = a; 14664fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 14674fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1468c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 14698b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 14704fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 14714fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1472c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 14738b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1474a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1475ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1476ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1477ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1478ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 14794fe895cdSHong Zhang } else { 14804de5dceeSHong Zhang Mat B; 14814de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 14824de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1483d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14844de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 14854de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 14864de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 14874de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 14884de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 14894de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 14904de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 14914de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 14924de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 14934de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 14944de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 14954de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 14964de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 14974de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 14984de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1499d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 15004de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 15014fe895cdSHong Zhang } 15024fe895cdSHong Zhang PetscFunctionReturn(0); 15034fe895cdSHong Zhang } 15044fe895cdSHong Zhang 1505a5e6ed63SBarry Smith #undef __FUNCT__ 1506a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 15071302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1508a5e6ed63SBarry Smith { 15096849ba73SBarry Smith PetscErrorCode ierr; 15101302d50aSBarry Smith PetscInt i; 1511ace3abfcSBarry Smith PetscBool flg; 1512a5e6ed63SBarry Smith 15136849ba73SBarry Smith PetscFunctionBegin; 15144dcd73b1SHong Zhang ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1515a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1516a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 15174dcd73b1SHong Zhang if (!flg) { /* *B[i] is non-symmetric, set flag */ 15184dcd73b1SHong Zhang ierr = MatSetOption(*B[i],MAT_SYMMETRIC,PETSC_FALSE);CHKERRQ(ierr); 1519a5e6ed63SBarry Smith } 15204dcd73b1SHong Zhang } 1521a5e6ed63SBarry Smith PetscFunctionReturn(0); 1522a5e6ed63SBarry Smith } 1523a5e6ed63SBarry Smith 1524a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 15253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1526a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1527a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1528a9d4b620SHong Zhang MatMult_MPISBAIJ, 152997304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1530431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1531431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay 0, 1534a30f8f8cSSatish Balay 0, 153597304618SKris Buschelman /* 10*/ 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 153841f059aeSBarry Smith MatSOR_MPISBAIJ, 1539a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 154097304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1541a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1542a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1543a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1544a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 154597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1546a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1547a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1548a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1549d519adbfSMatthew Knepley /* 24*/ 0, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 1553a30f8f8cSSatish Balay 0, 15544994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1555b5df2d14SHong Zhang 0, 1556a30f8f8cSSatish Balay 0, 1557a30f8f8cSSatish Balay 0, 1558a30f8f8cSSatish Balay 0, 1559d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1560a30f8f8cSSatish Balay 0, 1561a30f8f8cSSatish Balay 0, 1562a30f8f8cSSatish Balay 0, 1563a30f8f8cSSatish Balay 0, 1564d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1565a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1566d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1567a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15683c896bc6SHong Zhang MatCopy_MPISBAIJ, 1569d519adbfSMatthew Knepley /* 44*/ 0, 1570a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1571a30f8f8cSSatish Balay 0, 1572a30f8f8cSSatish Balay 0, 1573a30f8f8cSSatish Balay 0, 1574f73d5cc4SBarry Smith /* 49*/ 0, 1575a30f8f8cSSatish Balay 0, 1576a30f8f8cSSatish Balay 0, 1577a30f8f8cSSatish Balay 0, 1578a30f8f8cSSatish Balay 0, 1579d519adbfSMatthew Knepley /* 54*/ 0, 1580a30f8f8cSSatish Balay 0, 1581a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1582a30f8f8cSSatish Balay 0, 1583a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1584*8f46ffcaSHong Zhang /* 59*/ MatGetSubMatrix_MPISBAIJ, 1585a30f8f8cSSatish Balay 0, 1586a30f8f8cSSatish Balay 0, 1587357abbc8SBarry Smith 0, 158824d5174aSHong Zhang 0, 1589d519adbfSMatthew Knepley /* 64*/ 0, 159024d5174aSHong Zhang 0, 159124d5174aSHong Zhang 0, 159224d5174aSHong Zhang 0, 159324d5174aSHong Zhang 0, 1594d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 159524d5174aSHong Zhang 0, 159697304618SKris Buschelman 0, 159797304618SKris Buschelman 0, 159897304618SKris Buschelman 0, 1599d519adbfSMatthew Knepley /* 74*/ 0, 160097304618SKris Buschelman 0, 160197304618SKris Buschelman 0, 160297304618SKris Buschelman 0, 160397304618SKris Buschelman 0, 1604d519adbfSMatthew Knepley /* 79*/ 0, 160597304618SKris Buschelman 0, 160697304618SKris Buschelman 0, 160797304618SKris Buschelman 0, 16085bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1609d519adbfSMatthew Knepley /* 84*/ 0, 1610865e5f61SKris Buschelman 0, 1611865e5f61SKris Buschelman 0, 1612865e5f61SKris Buschelman 0, 1613865e5f61SKris Buschelman 0, 1614d519adbfSMatthew Knepley /* 89*/ 0, 1615865e5f61SKris Buschelman 0, 1616865e5f61SKris Buschelman 0, 1617865e5f61SKris Buschelman 0, 1618865e5f61SKris Buschelman 0, 1619d519adbfSMatthew Knepley /* 94*/ 0, 1620865e5f61SKris Buschelman 0, 1621865e5f61SKris Buschelman 0, 162299cafbc1SBarry Smith 0, 162399cafbc1SBarry Smith 0, 1624d519adbfSMatthew Knepley /* 99*/ 0, 162599cafbc1SBarry Smith 0, 162699cafbc1SBarry Smith 0, 162799cafbc1SBarry Smith 0, 162899cafbc1SBarry Smith 0, 1629d519adbfSMatthew Knepley /*104*/ 0, 163099cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1631d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1632d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 163395936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 163495936485SShri Abhyankar /*109*/ 0, 163595936485SShri Abhyankar 0, 163695936485SShri Abhyankar 0, 163795936485SShri Abhyankar 0, 163895936485SShri Abhyankar 0, 163995936485SShri Abhyankar /*114*/ 0, 164095936485SShri Abhyankar 0, 164195936485SShri Abhyankar 0, 164295936485SShri Abhyankar 0, 164395936485SShri Abhyankar 0, 164495936485SShri Abhyankar /*119*/ 0, 164595936485SShri Abhyankar 0, 164695936485SShri Abhyankar 0, 16473964eb88SJed Brown 0, 16483964eb88SJed Brown 0, 16493964eb88SJed Brown /*124*/ 0, 16503964eb88SJed Brown 0, 16513964eb88SJed Brown 0, 16523964eb88SJed Brown 0, 16533964eb88SJed Brown 0, 16543964eb88SJed Brown /*129*/ 0, 16553964eb88SJed Brown 0, 16563964eb88SJed Brown 0, 16573964eb88SJed Brown 0, 16583964eb88SJed Brown 0, 16593964eb88SJed Brown /*134*/ 0, 16603964eb88SJed Brown 0, 16613964eb88SJed Brown 0, 16623964eb88SJed Brown 0, 16633964eb88SJed Brown 0, 16643964eb88SJed Brown /*139*/ 0, 1665f9426fe0SMark Adams 0, 166659f5e6ceSHong Zhang 0, 166759f5e6ceSHong Zhang 0, 166859f5e6ceSHong Zhang 0, 166959f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 167099cafbc1SBarry Smith }; 1671a30f8f8cSSatish Balay 16724a2ae208SSatish Balay #undef __FUNCT__ 16734a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 167411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1675a30f8f8cSSatish Balay { 1676a30f8f8cSSatish Balay PetscFunctionBegin; 1677a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1678a30f8f8cSSatish Balay PetscFunctionReturn(0); 1679a30f8f8cSSatish Balay } 1680a30f8f8cSSatish Balay 16814a2ae208SSatish Balay #undef __FUNCT__ 1682a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1683b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1684a23d5eceSKris Buschelman { 1685a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1686dfbe8321SBarry Smith PetscErrorCode ierr; 1687535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1688a23d5eceSKris Buschelman 1689a23d5eceSKris Buschelman PetscFunctionBegin; 169033d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 169126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 169226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1693e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1694899cda47SBarry Smith 1695a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1696d0f46423SBarry Smith mbs = B->rmap->n/bs; 1697d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1698c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1699a23d5eceSKris Buschelman 1700d0f46423SBarry Smith B->rmap->bs = bs; 1701a23d5eceSKris Buschelman b->bs2 = bs*bs; 1702a23d5eceSKris Buschelman b->mbs = mbs; 1703a23d5eceSKris Buschelman b->Mbs = Mbs; 1704de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1705de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1706a23d5eceSKris Buschelman 1707a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1708d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1709a23d5eceSKris Buschelman } 1710d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1711d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1712a23d5eceSKris Buschelman 1713d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1714d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1715a23d5eceSKris Buschelman 1716526dfc15SBarry Smith if (!B->preallocated) { 1717f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1718d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 17199c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 17203bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1721f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1722d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 17234aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 17243bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1725ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1726526dfc15SBarry Smith } 1727a23d5eceSKris Buschelman 1728526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1729526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 173026fbe8dcSKarl Rupp 1731526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1732a23d5eceSKris Buschelman PetscFunctionReturn(0); 1733a23d5eceSKris Buschelman } 1734a23d5eceSKris Buschelman 1735dfb205c3SBarry Smith #undef __FUNCT__ 1736dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1737dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1738dfb205c3SBarry Smith { 1739dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1740dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1741dfb205c3SBarry Smith const PetscInt *JJ =0; 1742dfb205c3SBarry Smith PetscScalar *values=0; 1743dfb205c3SBarry Smith PetscErrorCode ierr; 1744dfb205c3SBarry Smith 1745dfb205c3SBarry Smith PetscFunctionBegin; 1746ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1747dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1748dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1749dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1750dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1751e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1752dfb205c3SBarry Smith m = B->rmap->n/bs; 1753dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1754dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1755dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1756dfb205c3SBarry Smith 1757dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1758dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 1759dfb205c3SBarry Smith for (i=0; i<m; i++) { 1760dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1761dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1762dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1763dfb205c3SBarry Smith JJ = jj + ii[i]; 1764dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1765dfb205c3SBarry Smith if (*JJ >= cstart) break; 1766dfb205c3SBarry Smith JJ++; 1767dfb205c3SBarry Smith } 1768dfb205c3SBarry Smith d = 0; 1769dfb205c3SBarry Smith for (; j<nz; j++) { 1770dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1771dfb205c3SBarry Smith d++; 1772dfb205c3SBarry Smith } 1773dfb205c3SBarry Smith d_nnz[i] = d; 1774dfb205c3SBarry Smith o_nnz[i] = nz - d; 1775dfb205c3SBarry Smith } 1776dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1777dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1778dfb205c3SBarry Smith 1779dfb205c3SBarry Smith values = (PetscScalar*)V; 1780dfb205c3SBarry Smith if (!values) { 1781785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 1782dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1783dfb205c3SBarry Smith } 1784dfb205c3SBarry Smith for (i=0; i<m; i++) { 1785dfb205c3SBarry Smith PetscInt row = i + rstart; 1786dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1787dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1788dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1789dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1790dfb205c3SBarry Smith } 1791dfb205c3SBarry Smith 1792dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1793dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1794dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17957827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1796dfb205c3SBarry Smith PetscFunctionReturn(0); 1797dfb205c3SBarry Smith } 1798dfb205c3SBarry Smith 17990bad9183SKris Buschelman /*MC 1800fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1801828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1802828413b8SBarry Smith the matrix is stored. 1803828413b8SBarry Smith 1804828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1805828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 18060bad9183SKris Buschelman 18070bad9183SKris Buschelman Options Database Keys: 18080bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 18090bad9183SKris Buschelman 18100bad9183SKris Buschelman Level: beginner 18110bad9183SKris Buschelman 18120bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 18130bad9183SKris Buschelman M*/ 18140bad9183SKris Buschelman 18158cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1816aa5a9175SDahai Guo 1817a23d5eceSKris Buschelman #undef __FUNCT__ 18184a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 18198cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1820b5df2d14SHong Zhang { 1821b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1822dfbe8321SBarry Smith PetscErrorCode ierr; 182394ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 1824b5df2d14SHong Zhang 1825b5df2d14SHong Zhang PetscFunctionBegin; 1826b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1827b0a32e0cSBarry Smith B->data = (void*)b; 1828b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1831b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1832b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1833b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 183426fbe8dcSKarl Rupp 1835ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1836ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1837b5df2d14SHong Zhang 1838b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1839854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 1840b5df2d14SHong Zhang 1841b5df2d14SHong Zhang /* build cache for off array entries formed */ 1842ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 184326fbe8dcSKarl Rupp 1844b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 18450298fd71SBarry Smith b->colmap = NULL; 18460298fd71SBarry Smith b->garray = NULL; 1847b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang /* stuff used in block assembly */ 1850b5df2d14SHong Zhang b->barray = 0; 1851b5df2d14SHong Zhang 1852b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1853b5df2d14SHong Zhang b->lvec = 0; 1854b5df2d14SHong Zhang b->Mvctx = 0; 185540781036SHong Zhang b->slvec0 = 0; 185640781036SHong Zhang b->slvec0b = 0; 185740781036SHong Zhang b->slvec1 = 0; 185840781036SHong Zhang b->slvec1a = 0; 185940781036SHong Zhang b->slvec1b = 0; 186040781036SHong Zhang b->sMvctx = 0; 1861b5df2d14SHong Zhang 1862b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1863b5df2d14SHong Zhang b->rowindices = 0; 1864b5df2d14SHong Zhang b->rowvalues = 0; 1865b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang /* hash table stuff */ 1868b5df2d14SHong Zhang b->ht = 0; 1869b5df2d14SHong Zhang b->hd = 0; 1870b5df2d14SHong Zhang b->ht_size = 0; 1871b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1872b5df2d14SHong Zhang b->ht_fact = 0; 1873b5df2d14SHong Zhang b->ht_total_ct = 0; 1874b5df2d14SHong Zhang b->ht_insert_ct = 0; 1875b5df2d14SHong Zhang 18767a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 18777a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 18787a868f3eSHong Zhang 187959ffdab8SBarry Smith b->in_loc = 0; 188059ffdab8SBarry Smith b->v_loc = 0; 188159ffdab8SBarry Smith b->n_loc = 0; 188294ae4db5SBarry Smith 1883bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1884bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1885bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1886bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1887bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1888bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 18896214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18906214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 18916214f412SHong Zhang #endif 1892aa5a9175SDahai Guo 189323ce1328SBarry Smith B->symmetric = PETSC_TRUE; 189423ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 189523ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 189623ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 189726fbe8dcSKarl Rupp 189817667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 189994ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 190094ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 190194ae4db5SBarry Smith if (flg) { 190294ae4db5SBarry Smith PetscReal fact = 1.39; 190394ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 190494ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 190594ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 190694ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 190794ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 190894ae4db5SBarry Smith } 190994ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1910b5df2d14SHong Zhang PetscFunctionReturn(0); 1911b5df2d14SHong Zhang } 1912b5df2d14SHong Zhang 1913209238afSKris Buschelman /*MC 1914002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1915209238afSKris Buschelman 1916209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1917209238afSKris Buschelman and MATMPISBAIJ otherwise. 1918209238afSKris Buschelman 1919209238afSKris Buschelman Options Database Keys: 1920209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1921209238afSKris Buschelman 1922209238afSKris Buschelman Level: beginner 1923209238afSKris Buschelman 1924209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1925209238afSKris Buschelman M*/ 1926209238afSKris Buschelman 19274a2ae208SSatish Balay #undef __FUNCT__ 19284a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1929b5df2d14SHong Zhang /*@C 1930b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1931b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1932b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1933b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1934b5df2d14SHong Zhang 1935b5df2d14SHong Zhang Collective on Mat 1936b5df2d14SHong Zhang 1937b5df2d14SHong Zhang Input Parameters: 19381c4f3114SJed Brown + B - the matrix 1939bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1940bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1941b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1942b5df2d14SHong Zhang submatrix (same for all local rows) 1943b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 19446d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 19450298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 194695742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1947b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1948b5df2d14SHong Zhang submatrix (same for all local rows). 1949b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1950c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 19510298fd71SBarry Smith (possibly different for each block row) or NULL. 1952b5df2d14SHong Zhang 1953b5df2d14SHong Zhang 1954b5df2d14SHong Zhang Options Database Keys: 1955b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1956b5df2d14SHong Zhang block calculations (much slower) 1957b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1958b5df2d14SHong Zhang 1959b5df2d14SHong Zhang Notes: 1960b5df2d14SHong Zhang 1961b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1962b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1963b5df2d14SHong Zhang 196449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 196549a6f317SBarry Smith 1966b5df2d14SHong Zhang Storage Information: 1967b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1968b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1969b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1970b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1971b5df2d14SHong Zhang 1972b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1973b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 19740298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1975b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1976b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1977b5df2d14SHong Zhang 1978aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1979aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1980aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1981aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1982aa95bbe8SBarry Smith 1983b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1984b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1985b5df2d14SHong Zhang 1986b5df2d14SHong Zhang .vb 1987b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1988a4b1a0f6SJed Brown -------------------------- 1989c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1990c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1991c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1992a4b1a0f6SJed Brown -------------------------- 1993b5df2d14SHong Zhang .ve 1994b5df2d14SHong Zhang 1995b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1996b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19976d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19986d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1999b5df2d14SHong Zhang 20006d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20016d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2002c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2003c2fc9fa9SBarry Smith 2004b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2005b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2006b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2007b5df2d14SHong Zhang matrices. 2008b5df2d14SHong Zhang 2009b5df2d14SHong Zhang Level: intermediate 2010b5df2d14SHong Zhang 2011b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 2012b5df2d14SHong Zhang 2013ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2014b5df2d14SHong Zhang @*/ 20157087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2016b5df2d14SHong Zhang { 20174ac538c5SBarry Smith PetscErrorCode ierr; 2018b5df2d14SHong Zhang 2019b5df2d14SHong Zhang PetscFunctionBegin; 20206ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20216ba663aaSJed Brown PetscValidType(B,1); 20226ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 20234ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2024b5df2d14SHong Zhang PetscFunctionReturn(0); 2025b5df2d14SHong Zhang } 2026b5df2d14SHong Zhang 20274a2ae208SSatish Balay #undef __FUNCT__ 202869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 2029a30f8f8cSSatish Balay /*@C 203069b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2031a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2032a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2033a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2034a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2035a30f8f8cSSatish Balay 2036a30f8f8cSSatish Balay Collective on MPI_Comm 2037a30f8f8cSSatish Balay 2038a30f8f8cSSatish Balay Input Parameters: 2039a30f8f8cSSatish Balay + comm - MPI communicator 2040bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2041bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2042a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2043a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2044a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2045a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2046a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2047a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2048a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2049a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2050a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2051a30f8f8cSSatish Balay submatrix (same for all local rows) 2052a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 20536d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 20540298fd71SBarry Smith (possibly different for each block block row) or NULL. 205595742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 205695742e49SBarry Smith set its value even if it is zero. 2057a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2058a30f8f8cSSatish Balay submatrix (same for all local rows). 2059a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2060a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 20610298fd71SBarry Smith each block row) or NULL. 2062a30f8f8cSSatish Balay 2063a30f8f8cSSatish Balay Output Parameter: 2064a30f8f8cSSatish Balay . A - the matrix 2065a30f8f8cSSatish Balay 2066a30f8f8cSSatish Balay Options Database Keys: 2067a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 2068a30f8f8cSSatish Balay block calculations (much slower) 2069a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2070a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 2071a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2072a30f8f8cSSatish Balay 2073175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2074ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2075175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2076175b88e8SBarry Smith 2077a30f8f8cSSatish Balay Notes: 2078d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 20796d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2080d1be2dadSMatthew Knepley 2081a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2082a30f8f8cSSatish Balay (possibly both). 2083a30f8f8cSSatish Balay 2084a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2085a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2086a30f8f8cSSatish Balay 208749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 208849a6f317SBarry Smith 2089a30f8f8cSSatish Balay Storage Information: 2090a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2091a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2092a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2093a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2094a30f8f8cSSatish Balay 2095a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2096a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20970298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2098a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2099a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2100a30f8f8cSSatish Balay 2101a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2102a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2103a30f8f8cSSatish Balay 2104a30f8f8cSSatish Balay .vb 2105a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2106a4b1a0f6SJed Brown -------------------------- 2107c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2108c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2109c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2110a4b1a0f6SJed Brown -------------------------- 2111a30f8f8cSSatish Balay .ve 2112a30f8f8cSSatish Balay 2113a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2114a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 21156d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 21166d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2117a30f8f8cSSatish Balay 21186d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 21196d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2120a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2121a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2122a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2123a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2124a30f8f8cSSatish Balay matrices. 2125a30f8f8cSSatish Balay 2126a30f8f8cSSatish Balay Level: intermediate 2127a30f8f8cSSatish Balay 2128a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2129a30f8f8cSSatish Balay 213069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2131a30f8f8cSSatish Balay @*/ 2132a30f8f8cSSatish Balay 213369b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2134a30f8f8cSSatish Balay { 21356849ba73SBarry Smith PetscErrorCode ierr; 21361302d50aSBarry Smith PetscMPIInt size; 2137a30f8f8cSSatish Balay 2138a30f8f8cSSatish Balay PetscFunctionBegin; 2139f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2140f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2141273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2142273d9f13SBarry Smith if (size > 1) { 2143b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2144b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2145273d9f13SBarry Smith } else { 2146273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2147273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2148273d9f13SBarry Smith } 2149a30f8f8cSSatish Balay PetscFunctionReturn(0); 2150a30f8f8cSSatish Balay } 2151a30f8f8cSSatish Balay 2152a30f8f8cSSatish Balay 21534a2ae208SSatish Balay #undef __FUNCT__ 21544a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 21556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2156a30f8f8cSSatish Balay { 2157a30f8f8cSSatish Balay Mat mat; 2158a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2159dfbe8321SBarry Smith PetscErrorCode ierr; 2160d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2161387bc808SHong Zhang PetscScalar *array; 2162a30f8f8cSSatish Balay 2163a30f8f8cSSatish Balay PetscFunctionBegin; 2164a30f8f8cSSatish Balay *newmat = 0; 216526fbe8dcSKarl Rupp 2166ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2167d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 21687adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 21691d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 21701e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 21711e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2172e1b6402fSHong Zhang 2173d5f3da31SBarry Smith mat->factortype = matin->factortype; 2174273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 217582327fa8SHong Zhang mat->assembled = PETSC_TRUE; 21767fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 21777fff6886SHong Zhang 2178b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2179a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2180a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2181a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2182a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2183a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2184a30f8f8cSSatish Balay 2185899cda47SBarry Smith 2186a30f8f8cSSatish Balay a->size = oldmat->size; 2187a30f8f8cSSatish Balay a->rank = oldmat->rank; 2188a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2189a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2190a30f8f8cSSatish Balay a->rowindices = 0; 2191a30f8f8cSSatish Balay a->rowvalues = 0; 2192a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2193a30f8f8cSSatish Balay a->barray = 0; 2194899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2195899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2196899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2197899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2198a30f8f8cSSatish Balay 2199a30f8f8cSSatish Balay /* hash table stuff */ 2200a30f8f8cSSatish Balay a->ht = 0; 2201a30f8f8cSSatish Balay a->hd = 0; 2202a30f8f8cSSatish Balay a->ht_size = 0; 2203a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2204a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2205a30f8f8cSSatish Balay a->ht_total_ct = 0; 2206a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2207a30f8f8cSSatish Balay 2208899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2209a30f8f8cSSatish Balay if (oldmat->colmap) { 2210a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2211a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay #else 2213854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 22143bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 22151302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2216a30f8f8cSSatish Balay #endif 2217a30f8f8cSSatish Balay } else a->colmap = 0; 2218387bc808SHong Zhang 2219a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2220785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 22213bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 22221302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2223a30f8f8cSSatish Balay } else a->garray = 0; 2224a30f8f8cSSatish Balay 2225ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22273bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 22293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 223082327fa8SHong Zhang 223182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 22323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 223382327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 22343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2235387bc808SHong Zhang 2236387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 22371ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2238778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2239778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 22401ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 22411ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2242778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 22431ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 22443bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 22453bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 22463bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 22473bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 22483bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2249387bc808SHong Zhang 2250387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2251387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2252387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 22533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 225482327fa8SHong Zhang 2255a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2257a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2259140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2260a30f8f8cSSatish Balay *newmat = mat; 2261a30f8f8cSSatish Balay PetscFunctionReturn(0); 2262a30f8f8cSSatish Balay } 2263a30f8f8cSSatish Balay 22644a2ae208SSatish Balay #undef __FUNCT__ 22655bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2266112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 226795936485SShri Abhyankar { 226895936485SShri Abhyankar PetscErrorCode ierr; 226995936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 227095936485SShri Abhyankar PetscScalar *vals,*buf; 2271ce94432eSBarry Smith MPI_Comm comm; 227295936485SShri Abhyankar MPI_Status status; 2273adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2274adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 227595936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 22763059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 227795936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 227895936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 227995936485SShri Abhyankar int fd; 228095936485SShri Abhyankar 228195936485SShri Abhyankar PetscFunctionBegin; 2282ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22830298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 22840298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 228595936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 22863059b6faSBarry Smith if (bs < 0) bs = 1; 228795936485SShri Abhyankar 228895936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 228995936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 229095936485SShri Abhyankar if (!rank) { 229195936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 229295936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 229395936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 229495936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 229595936485SShri Abhyankar } 229695936485SShri Abhyankar 229795936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 229895936485SShri Abhyankar 229995936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 230026fbe8dcSKarl Rupp M = header[1]; 230126fbe8dcSKarl Rupp N = header[2]; 230295936485SShri Abhyankar 230395936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 230495936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 230595936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 230695936485SShri Abhyankar 230795936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 230895936485SShri Abhyankar if (sizesset) { 230995936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 231095936485SShri Abhyankar } 2311abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2312abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 231395936485SShri Abhyankar 231495936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 231595936485SShri Abhyankar 231695936485SShri Abhyankar /* 231795936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 231895936485SShri Abhyankar divisible by the blocksize 231995936485SShri Abhyankar */ 232095936485SShri Abhyankar Mbs = M/bs; 232195936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 232295936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 232395936485SShri Abhyankar else Mbs++; 232495936485SShri Abhyankar if (extra_rows &&!rank) { 232595936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 232695936485SShri Abhyankar } 232795936485SShri Abhyankar 232895936485SShri Abhyankar /* determine ownership of all rows */ 232995936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 233095936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 233195936485SShri Abhyankar m = mbs*bs; 233295936485SShri Abhyankar } else { /* User Set */ 233395936485SShri Abhyankar m = newmat->rmap->n; 233495936485SShri Abhyankar mbs = m/bs; 233595936485SShri Abhyankar } 2336dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 23374dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 233895936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 233995936485SShri Abhyankar rowners[0] = 0; 234095936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 234195936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 234295936485SShri Abhyankar rstart = rowners[rank]; 234395936485SShri Abhyankar rend = rowners[rank+1]; 234495936485SShri Abhyankar 234595936485SShri Abhyankar /* distribute row lengths to all processors */ 2346785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 234795936485SShri Abhyankar if (!rank) { 2348854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 234995936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 235095936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2351785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 235295936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 235395936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 235495936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 235595936485SShri Abhyankar } else { 235695936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 235795936485SShri Abhyankar } 235895936485SShri Abhyankar 235995936485SShri Abhyankar if (!rank) { /* procs[0] */ 236095936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2361785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 236295936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 236395936485SShri Abhyankar for (i=0; i<size; i++) { 236495936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 236595936485SShri Abhyankar procsnz[i] += rowlengths[j]; 236695936485SShri Abhyankar } 236795936485SShri Abhyankar } 236895936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 236995936485SShri Abhyankar 237095936485SShri Abhyankar /* determine max buffer needed and allocate it */ 237195936485SShri Abhyankar maxnz = 0; 237295936485SShri Abhyankar for (i=0; i<size; i++) { 237395936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 237495936485SShri Abhyankar } 2375785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 237695936485SShri Abhyankar 237795936485SShri Abhyankar /* read in my part of the matrix column indices */ 237895936485SShri Abhyankar nz = procsnz[0]; 2379785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 238095936485SShri Abhyankar mycols = ibuf; 238195936485SShri Abhyankar if (size == 1) nz -= extra_rows; 238295936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 238326fbe8dcSKarl Rupp if (size == 1) { 238426fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 238526fbe8dcSKarl Rupp } 238695936485SShri Abhyankar 238795936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 238895936485SShri Abhyankar for (i=1; i<size-1; i++) { 238995936485SShri Abhyankar nz = procsnz[i]; 239095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 239195936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 239295936485SShri Abhyankar } 239395936485SShri Abhyankar /* read in the stuff for the last proc */ 239495936485SShri Abhyankar if (size != 1) { 239595936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 239695936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 239795936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 239895936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 239995936485SShri Abhyankar } 240095936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 240195936485SShri Abhyankar } else { /* procs[i], i>0 */ 240295936485SShri Abhyankar /* determine buffer space needed for message */ 240395936485SShri Abhyankar nz = 0; 240426fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2405785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 240695936485SShri Abhyankar mycols = ibuf; 240795936485SShri Abhyankar /* receive message of column indices*/ 240895936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 240995936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 241095936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 241195936485SShri Abhyankar } 241295936485SShri Abhyankar 241395936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2414dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2415dcca6d9dSJed Brown ierr = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 241695936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 241795936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 241895936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 241995936485SShri Abhyankar rowcount = 0; 242095936485SShri Abhyankar nzcount = 0; 242195936485SShri Abhyankar for (i=0; i<mbs; i++) { 242295936485SShri Abhyankar dcount = 0; 242395936485SShri Abhyankar odcount = 0; 242495936485SShri Abhyankar for (j=0; j<bs; j++) { 242595936485SShri Abhyankar kmax = locrowlens[rowcount]; 242695936485SShri Abhyankar for (k=0; k<kmax; k++) { 242795936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 242895936485SShri Abhyankar if (!mask[tmp]) { 242995936485SShri Abhyankar mask[tmp] = 1; 243095936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 243195936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 243295936485SShri Abhyankar } 243395936485SShri Abhyankar } 243495936485SShri Abhyankar rowcount++; 243595936485SShri Abhyankar } 243695936485SShri Abhyankar 243795936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 243895936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 243995936485SShri Abhyankar 244095936485SShri Abhyankar /* zero out the mask elements we set */ 244195936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 244295936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 244395936485SShri Abhyankar } 244495936485SShri Abhyankar if (!sizesset) { 244595936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 244695936485SShri Abhyankar } 244795936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 24486816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 244995936485SShri Abhyankar 245095936485SShri Abhyankar if (!rank) { 2451785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 245295936485SShri Abhyankar /* read in my part of the matrix numerical values */ 245395936485SShri Abhyankar nz = procsnz[0]; 245495936485SShri Abhyankar vals = buf; 245595936485SShri Abhyankar mycols = ibuf; 245695936485SShri Abhyankar if (size == 1) nz -= extra_rows; 245795936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 245826fbe8dcSKarl Rupp if (size == 1) { 245926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 246026fbe8dcSKarl Rupp } 246195936485SShri Abhyankar 246295936485SShri Abhyankar /* insert into matrix */ 246395936485SShri Abhyankar jj = rstart*bs; 246495936485SShri Abhyankar for (i=0; i<m; i++) { 246595936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 246695936485SShri Abhyankar mycols += locrowlens[i]; 246795936485SShri Abhyankar vals += locrowlens[i]; 246895936485SShri Abhyankar jj++; 246995936485SShri Abhyankar } 247095936485SShri Abhyankar 247195936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 247295936485SShri Abhyankar for (i=1; i<size-1; i++) { 247395936485SShri Abhyankar nz = procsnz[i]; 247495936485SShri Abhyankar vals = buf; 247595936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 247695936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 247795936485SShri Abhyankar } 247895936485SShri Abhyankar /* the last proc */ 247995936485SShri Abhyankar if (size != 1) { 248095936485SShri Abhyankar nz = procsnz[i] - extra_rows; 248195936485SShri Abhyankar vals = buf; 248295936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 248395936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 248495936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 248595936485SShri Abhyankar } 248695936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 248795936485SShri Abhyankar 248895936485SShri Abhyankar } else { 248995936485SShri Abhyankar /* receive numeric values */ 2490785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 249195936485SShri Abhyankar 249295936485SShri Abhyankar /* receive message of values*/ 249395936485SShri Abhyankar vals = buf; 249495936485SShri Abhyankar mycols = ibuf; 249595936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 249695936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 249795936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 249895936485SShri Abhyankar 249995936485SShri Abhyankar /* insert into matrix */ 250095936485SShri Abhyankar jj = rstart*bs; 250195936485SShri Abhyankar for (i=0; i<m; i++) { 250295936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 250395936485SShri Abhyankar mycols += locrowlens[i]; 250495936485SShri Abhyankar vals += locrowlens[i]; 250595936485SShri Abhyankar jj++; 250695936485SShri Abhyankar } 250795936485SShri Abhyankar } 250895936485SShri Abhyankar 250995936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 251095936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 251195936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 251295936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 251395936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 251495936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 251595936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 251695936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 251795936485SShri Abhyankar PetscFunctionReturn(0); 251895936485SShri Abhyankar } 251995936485SShri Abhyankar 252095936485SShri Abhyankar #undef __FUNCT__ 25214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2522dcf5cc72SBarry Smith /*XXXXX@ 2523a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2524a30f8f8cSSatish Balay 2525a30f8f8cSSatish Balay Input Parameters: 2526a30f8f8cSSatish Balay . mat - the matrix 2527a30f8f8cSSatish Balay . fact - factor 2528a30f8f8cSSatish Balay 2529c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2530a30f8f8cSSatish Balay 2531a30f8f8cSSatish Balay Level: advanced 2532a30f8f8cSSatish Balay 2533a30f8f8cSSatish Balay Notes: 2534a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2535a30f8f8cSSatish Balay 2536a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2537a30f8f8cSSatish Balay 2538a30f8f8cSSatish Balay .seealso: MatSetOption() 2539dcf5cc72SBarry Smith @XXXXX*/ 2540dcf5cc72SBarry Smith 254124d5174aSHong Zhang 25424a2ae208SSatish Balay #undef __FUNCT__ 2543985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2544985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 254524d5174aSHong Zhang { 254624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2547f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2548ca54ac64SHong Zhang PetscReal atmp; 254987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2550dfbe8321SBarry Smith PetscErrorCode ierr; 25511302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25521302d50aSBarry Smith PetscMPIInt rank,size; 25531302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 255487828ca2SBarry Smith PetscScalar *va; 25558a1c53f2SBarry Smith MatScalar *ba; 2556f4c0e9e4SHong Zhang MPI_Status stat; 255724d5174aSHong Zhang 255824d5174aSHong Zhang PetscFunctionBegin; 2559e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 25600298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 25611ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2562f4c0e9e4SHong Zhang 2563ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2564ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2565f4c0e9e4SHong Zhang 2566d0f46423SBarry Smith bs = A->rmap->bs; 2567f4c0e9e4SHong Zhang mbs = a->mbs; 2568f4c0e9e4SHong Zhang Mbs = a->Mbs; 2569f4c0e9e4SHong Zhang ba = b->a; 2570f4c0e9e4SHong Zhang bi = b->i; 2571f4c0e9e4SHong Zhang bj = b->j; 2572f4c0e9e4SHong Zhang 2573f4c0e9e4SHong Zhang /* find ownerships */ 2574d0f46423SBarry Smith rowners_bs = A->rmap->range; 2575f4c0e9e4SHong Zhang 2576f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2577785e854fSJed Brown ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2578ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2579f4c0e9e4SHong Zhang 2580f4c0e9e4SHong Zhang /* row_max for B */ 2581b8475685SHong Zhang if (rank != size-1) { 2582f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2583f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2584f4c0e9e4SHong Zhang brow = bs*i; 2585f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2586f4c0e9e4SHong Zhang bcol = bs*(*bj); 2587f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2588ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 258904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2590f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2591f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2592ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2593ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2594f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2595f4c0e9e4SHong Zhang } 2596f4c0e9e4SHong Zhang } 2597f4c0e9e4SHong Zhang bj++; 2598f4c0e9e4SHong Zhang } 2599f4c0e9e4SHong Zhang } 2600f4c0e9e4SHong Zhang 2601f4c0e9e4SHong Zhang /* send values to its owners */ 2602f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2603f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2604ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2605ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2606ca54ac64SHong Zhang } 2607f4c0e9e4SHong Zhang } 2608f4c0e9e4SHong Zhang 2609f4c0e9e4SHong Zhang /* receive values */ 2610ca54ac64SHong Zhang if (rank) { 2611f4c0e9e4SHong Zhang rvalues = work; 2612ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2613f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2614ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2615f4c0e9e4SHong Zhang /* process values */ 2616f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2617ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2618f4c0e9e4SHong Zhang } 2619f4c0e9e4SHong Zhang } 2620ca54ac64SHong Zhang } 2621f4c0e9e4SHong Zhang 26221ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2623ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 262424d5174aSHong Zhang PetscFunctionReturn(0); 262524d5174aSHong Zhang } 26262798e883SHong Zhang 26272798e883SHong Zhang #undef __FUNCT__ 262841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 262941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26302798e883SHong Zhang { 26312798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2632dfbe8321SBarry Smith PetscErrorCode ierr; 2633d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26343649974fSBarry Smith PetscScalar *x,*ptr,*from; 2635ffe4fb16SHong Zhang Vec bb1; 26363649974fSBarry Smith const PetscScalar *b; 2637ffe4fb16SHong Zhang 2638ffe4fb16SHong Zhang PetscFunctionBegin; 2639e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2640e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2641ffe4fb16SHong Zhang 2642a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 264341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2644a2b30743SBarry Smith PetscFunctionReturn(0); 2645a2b30743SBarry Smith } 2646a2b30743SBarry Smith 2647ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2648ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 264941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2650ffe4fb16SHong Zhang its--; 2651ffe4fb16SHong Zhang } 2652ffe4fb16SHong Zhang 2653ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2654ffe4fb16SHong Zhang while (its--) { 2655ffe4fb16SHong Zhang 2656ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2657ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2658ffe4fb16SHong Zhang 2659ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26601ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26611ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2662ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26631ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2664ffe4fb16SHong Zhang 2665efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2666ffe4fb16SHong Zhang 2667ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26681ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 26693649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2670ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 26711ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2672ffe4fb16SHong Zhang 2673ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2674fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2675ffe4fb16SHong Zhang 2676ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26771ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2678a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2679ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2680ffe4fb16SHong Zhang 2681ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2682ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2683ffe4fb16SHong Zhang 2684ffe4fb16SHong Zhang /* local diagonal sweep */ 268541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2686ffe4fb16SHong Zhang } 26876bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2688fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 268941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2690fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 269141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2692fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2693fa22f6d0SBarry Smith Vec xx1; 2694ace3abfcSBarry Smith PetscBool hasop; 269520f1ed55SBarry Smith const PetscScalar *diag; 2696887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 269720f1ed55SBarry Smith PetscInt i,n; 2698fa22f6d0SBarry Smith 2699fa22f6d0SBarry Smith if (!mat->xx1) { 2700fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2701fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2702fa22f6d0SBarry Smith } 2703fa22f6d0SBarry Smith xx1 = mat->xx1; 2704fa22f6d0SBarry Smith bb1 = mat->bb1; 2705fa22f6d0SBarry Smith 270641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2707fa22f6d0SBarry Smith 2708fa22f6d0SBarry Smith if (!mat->diag) { 2709effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27102a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2711fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2712fa22f6d0SBarry Smith } 2713fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2714fa22f6d0SBarry Smith 2715fa22f6d0SBarry Smith if (hasop) { 2716fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2717887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 271820f1ed55SBarry Smith } else { 271920f1ed55SBarry Smith /* 272020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 272120f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2722887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 272320f1ed55SBarry Smith */ 272420f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27253649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27263649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 272720f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 272820f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2729887ee2caSBarry Smith if (omega == 1.0) { 273026fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 273120f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2732887ee2caSBarry Smith } else { 273326fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2734887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2735887ee2caSBarry Smith } 273620f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27373649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27383649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 273920f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 274020f1ed55SBarry Smith } 2741fa22f6d0SBarry Smith 2742fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2743fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2744fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2745fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2746fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2747fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2748fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2749fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2750fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2751fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2752effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2753fa22f6d0SBarry Smith 2754fa22f6d0SBarry Smith /* local sweep */ 275541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2756fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2757f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2758ffe4fb16SHong Zhang PetscFunctionReturn(0); 2759ffe4fb16SHong Zhang } 2760ffe4fb16SHong Zhang 2761ffe4fb16SHong Zhang #undef __FUNCT__ 276241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 276341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2764ffe4fb16SHong Zhang { 2765ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2766dfbe8321SBarry Smith PetscErrorCode ierr; 27672798e883SHong Zhang Vec lvec1,bb1; 27682798e883SHong Zhang 27692798e883SHong Zhang PetscFunctionBegin; 2770e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2771e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 27722798e883SHong Zhang 2773c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 27742798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 277541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 27762798e883SHong Zhang its--; 27772798e883SHong Zhang } 27782798e883SHong Zhang 27792798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 27802798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 27812798e883SHong Zhang while (its--) { 2782ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27832798e883SHong Zhang 27842798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 27852798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2786efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 27872798e883SHong Zhang 2788ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27892798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2790ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27912798e883SHong Zhang 27922798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2793efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 27942798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 27952798e883SHong Zhang 2796ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27972798e883SHong Zhang 2798c14dc6b6SHong Zhang /* diagonal sweep */ 279941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 28002798e883SHong Zhang } 28016bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 28026bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 28036bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 28042798e883SHong Zhang PetscFunctionReturn(0); 28052798e883SHong Zhang } 28062798e883SHong Zhang 2807dfb205c3SBarry Smith #undef __FUNCT__ 2808dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2809dfb205c3SBarry Smith /*@ 2810dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2811dfb205c3SBarry Smith CSR format the local rows. 2812dfb205c3SBarry Smith 2813dfb205c3SBarry Smith Collective on MPI_Comm 2814dfb205c3SBarry Smith 2815dfb205c3SBarry Smith Input Parameters: 2816dfb205c3SBarry Smith + comm - MPI communicator 2817dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2818dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2819dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2820dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2821dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2822dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2823dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2824dfb205c3SBarry Smith . i - row indices 2825dfb205c3SBarry Smith . j - column indices 2826dfb205c3SBarry Smith - a - matrix values 2827dfb205c3SBarry Smith 2828dfb205c3SBarry Smith Output Parameter: 2829dfb205c3SBarry Smith . mat - the matrix 2830dfb205c3SBarry Smith 2831dfb205c3SBarry Smith Level: intermediate 2832dfb205c3SBarry Smith 2833dfb205c3SBarry Smith Notes: 2834dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2835dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2836dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2837dfb205c3SBarry Smith 2838dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2839dfb205c3SBarry Smith 2840dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2841dfb205c3SBarry Smith 2842dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 284369b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2844dfb205c3SBarry Smith @*/ 28457087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2846dfb205c3SBarry Smith { 2847dfb205c3SBarry Smith PetscErrorCode ierr; 2848dfb205c3SBarry Smith 2849dfb205c3SBarry Smith 2850dfb205c3SBarry Smith PetscFunctionBegin; 2851f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2852dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2853dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2854dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2855dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2856dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2857dfb205c3SBarry Smith PetscFunctionReturn(0); 2858dfb205c3SBarry Smith } 2859dfb205c3SBarry Smith 2860dfb205c3SBarry Smith 2861dfb205c3SBarry Smith #undef __FUNCT__ 2862dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2863dfb205c3SBarry Smith /*@C 2864dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2865dfb205c3SBarry Smith (the default parallel PETSc format). 2866dfb205c3SBarry Smith 2867dfb205c3SBarry Smith Collective on MPI_Comm 2868dfb205c3SBarry Smith 2869dfb205c3SBarry Smith Input Parameters: 28701c4f3114SJed Brown + B - the matrix 2871dfb205c3SBarry Smith . bs - the block size 2872dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2873dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2874dfb205c3SBarry Smith - v - optional values in the matrix 2875dfb205c3SBarry Smith 2876dfb205c3SBarry Smith Level: developer 2877dfb205c3SBarry Smith 2878dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2879dfb205c3SBarry Smith 288069b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2881dfb205c3SBarry Smith @*/ 28827087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2883dfb205c3SBarry Smith { 28844ac538c5SBarry Smith PetscErrorCode ierr; 2885dfb205c3SBarry Smith 2886dfb205c3SBarry Smith PetscFunctionBegin; 28874ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2888dfb205c3SBarry Smith PetscFunctionReturn(0); 2889dfb205c3SBarry Smith } 2890dfb205c3SBarry Smith 2891de4b53ebSHong Zhang #undef __FUNCT__ 289210c56fdeSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPISBAIJ" 289310c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28944dcd73b1SHong Zhang { 28954dcd73b1SHong Zhang PetscErrorCode ierr; 289610c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 289710c56fdeSHong Zhang PetscInt *indx; 289810c56fdeSHong Zhang PetscScalar *values; 2899dfb205c3SBarry Smith 29004dcd73b1SHong Zhang PetscFunctionBegin; 29014dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 290210c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 290310c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 290410c56fdeSHong Zhang PetscInt *dnz,*onz,sum,bs,cbs,mbs,Nbs; 290510c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 29064dcd73b1SHong Zhang 290710c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 290810c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 290910c56fdeSHong Zhang if (n == PETSC_DECIDE) { 291010c56fdeSHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 291110c56fdeSHong Zhang } 291210c56fdeSHong Zhang /* Check sum(n) = Nbs */ 291310c56fdeSHong Zhang ierr = MPI_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 291410c56fdeSHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 291510c56fdeSHong Zhang 291610c56fdeSHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 291710c56fdeSHong Zhang rstart -= mbs; 29184dcd73b1SHong Zhang 29194dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 292010c56fdeSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 2921e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 292210c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29234dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29244dcd73b1SHong Zhang nnz = nnz/bs; 29254dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29264dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29274dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29284dcd73b1SHong Zhang } 2929e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29304dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29314dcd73b1SHong Zhang 29324dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 293310c56fdeSHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29344dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 29354dcd73b1SHong Zhang ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr); 29364dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29374dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29384dcd73b1SHong Zhang } 29394dcd73b1SHong Zhang 294010c56fdeSHong Zhang /* numeric phase */ 29414dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 294210c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29434dcd73b1SHong Zhang 2944e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29454dcd73b1SHong Zhang for (i=0; i<m; i++) { 29464dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29474dcd73b1SHong Zhang Ii = i + rstart; 294810c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29494dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29504dcd73b1SHong Zhang } 2951e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 295210c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 295310c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29544dcd73b1SHong Zhang PetscFunctionReturn(0); 29554dcd73b1SHong Zhang } 2956