173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 1287828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1387828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1487828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1587828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1687828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1887828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 1987828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 21c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2487828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 25a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 26a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 27a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 28a30f8f8cSSatish Balay into the single precision data structures. 29a30f8f8cSSatish Balay */ 30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 31a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 36a30f8f8cSSatish Balay #else 37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 42a30f8f8cSSatish Balay #endif 43a30f8f8cSSatish Balay 44a30f8f8cSSatish Balay EXTERN_C_BEGIN 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 47a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 48a30f8f8cSSatish Balay { 49f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 50a30f8f8cSSatish Balay int ierr; 51a30f8f8cSSatish Balay 52a30f8f8cSSatish Balay PetscFunctionBegin; 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 55a30f8f8cSSatish Balay PetscFunctionReturn(0); 56a30f8f8cSSatish Balay } 57a30f8f8cSSatish Balay EXTERN_C_END 58a30f8f8cSSatish Balay 59a30f8f8cSSatish Balay EXTERN_C_BEGIN 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 62a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 63a30f8f8cSSatish Balay { 64f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 65a30f8f8cSSatish Balay int ierr; 66a30f8f8cSSatish Balay 67a30f8f8cSSatish Balay PetscFunctionBegin; 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 70a30f8f8cSSatish Balay PetscFunctionReturn(0); 71a30f8f8cSSatish Balay } 72a30f8f8cSSatish Balay EXTERN_C_END 73a30f8f8cSSatish Balay 74a30f8f8cSSatish Balay /* 75a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 76a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 77a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 78a30f8f8cSSatish Balay length of colmap equals the global matrix length. 79a30f8f8cSSatish Balay */ 804a2ae208SSatish Balay #undef __FUNCT__ 814a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 82a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 83a30f8f8cSSatish Balay { 84a30f8f8cSSatish Balay PetscFunctionBegin; 8529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 87a30f8f8cSSatish Balay } 88a30f8f8cSSatish Balay 89a30f8f8cSSatish Balay #define CHUNKSIZE 10 90a30f8f8cSSatish Balay 91a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 92a30f8f8cSSatish Balay { \ 93a30f8f8cSSatish Balay \ 94a30f8f8cSSatish Balay brow = row/bs; \ 95a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 96a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 97a30f8f8cSSatish Balay bcol = col/bs; \ 98a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 99a30f8f8cSSatish Balay low = 0; high = nrow; \ 100a30f8f8cSSatish Balay while (high-low > 3) { \ 101a30f8f8cSSatish Balay t = (low+high)/2; \ 102a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 103a30f8f8cSSatish Balay else low = t; \ 104a30f8f8cSSatish Balay } \ 105a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 106a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 107a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 108a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 109a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 110a30f8f8cSSatish Balay else *bap = value; \ 111a30f8f8cSSatish Balay goto a_noinsert; \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11529bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 116a30f8f8cSSatish Balay if (nrow >= rmax) { \ 117a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 118a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 119a30f8f8cSSatish Balay MatScalar *new_a; \ 120a30f8f8cSSatish Balay \ 12129bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 122a30f8f8cSSatish Balay \ 123a30f8f8cSSatish Balay /* malloc new storage space */ \ 124a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12582502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 126a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 127a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 128a30f8f8cSSatish Balay \ 129a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 130a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 131a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 132a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 133a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13687828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 137a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 138a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 139a30f8f8cSSatish Balay /* free up old matrix storage */ \ 140a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 141a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 143a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 144a30f8f8cSSatish Balay } \ 145a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 146a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 147a30f8f8cSSatish Balay \ 148a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 149a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 150b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 151a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 152a30f8f8cSSatish Balay a->reallocs++; \ 153a30f8f8cSSatish Balay a->s_nz++; \ 154a30f8f8cSSatish Balay } \ 155a30f8f8cSSatish Balay N = nrow++ - 1; \ 156a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 157a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 158a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 159a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 160a30f8f8cSSatish Balay } \ 161a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 162a30f8f8cSSatish Balay rp[_i] = bcol; \ 163a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 164a30f8f8cSSatish Balay a_noinsert:; \ 165a30f8f8cSSatish Balay ailen[brow] = nrow; \ 166a30f8f8cSSatish Balay } 167a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 168a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 169a30f8f8cSSatish Balay { \ 170a30f8f8cSSatish Balay brow = row/bs; \ 171a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 172a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 173a30f8f8cSSatish Balay bcol = col/bs; \ 174a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 175a30f8f8cSSatish Balay low = 0; high = nrow; \ 176a30f8f8cSSatish Balay while (high-low > 3) { \ 177a30f8f8cSSatish Balay t = (low+high)/2; \ 178a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 179a30f8f8cSSatish Balay else low = t; \ 180a30f8f8cSSatish Balay } \ 181a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 182a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 183a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 184a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 185a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 186a30f8f8cSSatish Balay else *bap = value; \ 187a30f8f8cSSatish Balay goto b_noinsert; \ 188a30f8f8cSSatish Balay } \ 189a30f8f8cSSatish Balay } \ 190a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19129bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 192a30f8f8cSSatish Balay if (nrow >= rmax) { \ 193a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 194a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 195a30f8f8cSSatish Balay MatScalar *new_a; \ 196a30f8f8cSSatish Balay \ 19729bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 198a30f8f8cSSatish Balay \ 199a30f8f8cSSatish Balay /* malloc new storage space */ \ 200a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20182502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 202a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 203a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 204a30f8f8cSSatish Balay \ 205a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 206a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 207a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 208a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 209a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 214a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 215a30f8f8cSSatish Balay /* free up old matrix storage */ \ 216a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 217a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 220a30f8f8cSSatish Balay } \ 221a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 222a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 223a30f8f8cSSatish Balay \ 224a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 225a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 226b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 227a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 228a30f8f8cSSatish Balay b->reallocs++; \ 229a30f8f8cSSatish Balay b->nz++; \ 230a30f8f8cSSatish Balay } \ 231a30f8f8cSSatish Balay N = nrow++ - 1; \ 232a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 233a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 234a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 235a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 236a30f8f8cSSatish Balay } \ 237a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 238a30f8f8cSSatish Balay rp[_i] = bcol; \ 239a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 240a30f8f8cSSatish Balay b_noinsert:; \ 241a30f8f8cSSatish Balay bilen[brow] = nrow; \ 242a30f8f8cSSatish Balay } 243a30f8f8cSSatish Balay #endif 244a30f8f8cSSatish Balay 245a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2464a2ae208SSatish Balay #undef __FUNCT__ 2474a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 24887828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 249a30f8f8cSSatish Balay { 250a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 251a30f8f8cSSatish Balay int ierr,i,N = m*n; 252a30f8f8cSSatish Balay MatScalar *vsingle; 253a30f8f8cSSatish Balay 254a30f8f8cSSatish Balay PetscFunctionBegin; 255a30f8f8cSSatish Balay if (N > b->setvalueslen) { 256a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25782502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 258a30f8f8cSSatish Balay b->setvalueslen = N; 259a30f8f8cSSatish Balay } 260a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 261a30f8f8cSSatish Balay 262a30f8f8cSSatish Balay for (i=0; i<N; i++) { 263a30f8f8cSSatish Balay vsingle[i] = v[i]; 264a30f8f8cSSatish Balay } 265a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 266a30f8f8cSSatish Balay PetscFunctionReturn(0); 267a30f8f8cSSatish Balay } 268a30f8f8cSSatish Balay 2694a2ae208SSatish Balay #undef __FUNCT__ 2704a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 27187828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 272a30f8f8cSSatish Balay { 273a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 274a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 275a30f8f8cSSatish Balay MatScalar *vsingle; 276a30f8f8cSSatish Balay 277a30f8f8cSSatish Balay PetscFunctionBegin; 278a30f8f8cSSatish Balay if (N > b->setvalueslen) { 279a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 28082502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 281a30f8f8cSSatish Balay b->setvalueslen = N; 282a30f8f8cSSatish Balay } 283a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 284a30f8f8cSSatish Balay for (i=0; i<N; i++) { 285a30f8f8cSSatish Balay vsingle[i] = v[i]; 286a30f8f8cSSatish Balay } 287a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 288a30f8f8cSSatish Balay PetscFunctionReturn(0); 289a30f8f8cSSatish Balay } 290a30f8f8cSSatish Balay 2914a2ae208SSatish Balay #undef __FUNCT__ 2924a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 29387828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 294a30f8f8cSSatish Balay { 295a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 296a30f8f8cSSatish Balay int ierr,i,N = m*n; 297a30f8f8cSSatish Balay MatScalar *vsingle; 298a30f8f8cSSatish Balay 299a30f8f8cSSatish Balay PetscFunctionBegin; 30029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3014d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 302a30f8f8cSSatish Balay } 303a30f8f8cSSatish Balay 3044a2ae208SSatish Balay #undef __FUNCT__ 3054a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 30687828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 307a30f8f8cSSatish Balay { 308a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 309a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 310a30f8f8cSSatish Balay MatScalar *vsingle; 311a30f8f8cSSatish Balay 312a30f8f8cSSatish Balay PetscFunctionBegin; 31329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3144d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay #endif 317a30f8f8cSSatish Balay 318a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 319a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 320a30f8f8cSSatish Balay */ 3214a2ae208SSatish Balay #undef __FUNCT__ 3224a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 323a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 324a30f8f8cSSatish Balay { 325a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 326a30f8f8cSSatish Balay MatScalar value; 327b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 328a30f8f8cSSatish Balay int ierr,i,j,row,col; 329b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 330a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 331a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 332a30f8f8cSSatish Balay 333a30f8f8cSSatish Balay /* Some Variables required in the macro */ 334a30f8f8cSSatish Balay Mat A = baij->A; 335a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 336a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 337a30f8f8cSSatish Balay MatScalar *aa=a->a; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay Mat B = baij->B; 340a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 341a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 342a30f8f8cSSatish Balay MatScalar *ba=b->a; 343a30f8f8cSSatish Balay 344a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 345a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 346a30f8f8cSSatish Balay MatScalar *ap,*bap; 347a30f8f8cSSatish Balay 348a30f8f8cSSatish Balay /* for stash */ 349f65c83cfSHong Zhang int n_loc, *in_loc=0; 350f65c83cfSHong Zhang MatScalar *v_loc=0; 351a30f8f8cSSatish Balay 352a30f8f8cSSatish Balay PetscFunctionBegin; 353a30f8f8cSSatish Balay 354a30f8f8cSSatish Balay if(!baij->donotstash){ 35582502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35682502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 357a30f8f8cSSatish Balay } 358a30f8f8cSSatish Balay 359a30f8f8cSSatish Balay for (i=0; i<m; i++) { 360a30f8f8cSSatish Balay if (im[i] < 0) continue; 361a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 362b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 363a30f8f8cSSatish Balay #endif 364a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 365a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 366a30f8f8cSSatish Balay for (j=0; j<n; j++) { 367f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 368a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 369a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 370a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 371a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 372a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 373a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 374a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 375a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 376a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 377b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 378a30f8f8cSSatish Balay #endif 379a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 380a30f8f8cSSatish Balay if (mat->was_assembled) { 381a30f8f8cSSatish Balay if (!baij->colmap) { 382a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } 384a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 385a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 386a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 387a30f8f8cSSatish Balay #else 388a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 389a30f8f8cSSatish Balay #endif 390a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 391a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 392a30f8f8cSSatish Balay col = in[j]; 393a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 394a30f8f8cSSatish Balay B = baij->B; 395a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 396a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 397a30f8f8cSSatish Balay ba=b->a; 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } else col = in[j]; 400a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 401a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 402a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } else { /* off processor entry */ 406a30f8f8cSSatish Balay if (!baij->donotstash) { 407a30f8f8cSSatish Balay n_loc = 0; 408a30f8f8cSSatish Balay for (j=0; j<n; j++){ 409f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 410a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 411a30f8f8cSSatish Balay if (roworiented) { 412a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 413a30f8f8cSSatish Balay } else { 414a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 415a30f8f8cSSatish Balay } 416a30f8f8cSSatish Balay n_loc++; 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay 423a30f8f8cSSatish Balay if(!baij->donotstash){ 424a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 425a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay PetscFunctionReturn(0); 428a30f8f8cSSatish Balay } 429a30f8f8cSSatish Balay 4304a2ae208SSatish Balay #undef __FUNCT__ 4314a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 432a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 433a30f8f8cSSatish Balay { 434a30f8f8cSSatish Balay PetscFunctionBegin; 43529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 437a30f8f8cSSatish Balay } 438a30f8f8cSSatish Balay 439a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 440a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 441a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 442a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4434a2ae208SSatish Balay #undef __FUNCT__ 4444a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 445a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 446a30f8f8cSSatish Balay { 447a30f8f8cSSatish Balay PetscFunctionBegin; 44829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 44996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 450a30f8f8cSSatish Balay } 451a30f8f8cSSatish Balay 4524a2ae208SSatish Balay #undef __FUNCT__ 4534a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 454a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 455a30f8f8cSSatish Balay { 456a30f8f8cSSatish Balay PetscFunctionBegin; 45729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 459a30f8f8cSSatish Balay } 460a30f8f8cSSatish Balay 4614a2ae208SSatish Balay #undef __FUNCT__ 4624a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 46387828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 464a30f8f8cSSatish Balay { 465f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 466a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 467a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 468a30f8f8cSSatish Balay 469a30f8f8cSSatish Balay PetscFunctionBegin; 470a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47129bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 472b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 473a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 474a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 475a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47629bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 477b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 478a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 479a30f8f8cSSatish Balay col = idxn[j] - bscstart; 480c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 481a30f8f8cSSatish Balay } else { 482a30f8f8cSSatish Balay if (!baij->colmap) { 483a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 484a30f8f8cSSatish Balay } 485a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 486a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 487a30f8f8cSSatish Balay data --; 488a30f8f8cSSatish Balay #else 489a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 490a30f8f8cSSatish Balay #endif 491a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 492a30f8f8cSSatish Balay else { 493a30f8f8cSSatish Balay col = data + idxn[j]%bs; 494c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay } else { 49929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 500a30f8f8cSSatish Balay } 501a30f8f8cSSatish Balay } 502a30f8f8cSSatish Balay PetscFunctionReturn(0); 503a30f8f8cSSatish Balay } 504a30f8f8cSSatish Balay 5054a2ae208SSatish Balay #undef __FUNCT__ 5064a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 507a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 508a30f8f8cSSatish Balay { 509a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 510bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 511bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 512a30f8f8cSSatish Balay int ierr; 513a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 514a30f8f8cSSatish Balay 515a30f8f8cSSatish Balay PetscFunctionBegin; 516a30f8f8cSSatish Balay if (baij->size == 1) { 517a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 518a30f8f8cSSatish Balay } else { 519a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 520f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 521a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 522a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 523a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 524a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 525a30f8f8cSSatish Balay /* 526a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 527a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 528a30f8f8cSSatish Balay */ 529d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 530a30f8f8cSSatish Balay /* 531a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 532a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 533a30f8f8cSSatish Balay 534a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 535a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 536a30f8f8cSSatish Balay } else { 53729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay PetscFunctionReturn(0); 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay 543a30f8f8cSSatish Balay /* 544a30f8f8cSSatish Balay Creates the hash table, and sets the table 545a30f8f8cSSatish Balay This table is created only once. 546a30f8f8cSSatish Balay If new entried need to be added to the matrix 547a30f8f8cSSatish Balay then the hash table has to be destroyed and 548a30f8f8cSSatish Balay recreated. 549a30f8f8cSSatish Balay */ 5504a2ae208SSatish Balay #undef __FUNCT__ 5514a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 552a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 553a30f8f8cSSatish Balay { 554a30f8f8cSSatish Balay PetscFunctionBegin; 55529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 557a30f8f8cSSatish Balay } 558a30f8f8cSSatish Balay 5594a2ae208SSatish Balay #undef __FUNCT__ 5604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 561a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 562a30f8f8cSSatish Balay { 563a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 564a30f8f8cSSatish Balay int ierr,nstash,reallocs; 565a30f8f8cSSatish Balay InsertMode addv; 566a30f8f8cSSatish Balay 567a30f8f8cSSatish Balay PetscFunctionBegin; 568a30f8f8cSSatish Balay if (baij->donotstash) { 569a30f8f8cSSatish Balay PetscFunctionReturn(0); 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 573a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 574a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 576a30f8f8cSSatish Balay } 577a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 578a30f8f8cSSatish Balay 579a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 580a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 581a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 582b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 583a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 584b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 585a30f8f8cSSatish Balay PetscFunctionReturn(0); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay 5884a2ae208SSatish Balay #undef __FUNCT__ 5894a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 590a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 591a30f8f8cSSatish Balay { 592a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 593a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 594a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 595a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 596a30f8f8cSSatish Balay int *row,*col,other_disassembled; 597a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 598a30f8f8cSSatish Balay MatScalar *val; 599a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 6006f651dedSSatish Balay /* int rank;*/ 601a30f8f8cSSatish Balay 602a30f8f8cSSatish Balay PetscFunctionBegin; 603a30f8f8cSSatish Balay /* remove 2 line below later */ 6046f651dedSSatish Balay /*ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); */ 605a30f8f8cSSatish Balay 606a30f8f8cSSatish Balay if (!baij->donotstash) { 607a30f8f8cSSatish Balay while (1) { 608a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 609a30f8f8cSSatish Balay /* 610a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 611a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 612a30f8f8cSSatish Balay */ 613a30f8f8cSSatish Balay if (!flg) break; 614a30f8f8cSSatish Balay 615a30f8f8cSSatish Balay for (i=0; i<n;) { 616a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 617a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 618a30f8f8cSSatish Balay if (j < n) ncols = j-i; 619a30f8f8cSSatish Balay else ncols = n-i; 620a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 621a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 622a30f8f8cSSatish Balay i = j; 623a30f8f8cSSatish Balay } 624a30f8f8cSSatish Balay } 625a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 626a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 627a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 628a30f8f8cSSatish Balay restore the original flags */ 629a30f8f8cSSatish Balay r1 = baij->roworiented; 630a30f8f8cSSatish Balay r2 = a->roworiented; 631a30f8f8cSSatish Balay r3 = b->roworiented; 632a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 633a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 634a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 635a30f8f8cSSatish Balay while (1) { 636a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 637a30f8f8cSSatish Balay if (!flg) break; 638a30f8f8cSSatish Balay 639a30f8f8cSSatish Balay for (i=0; i<n;) { 640a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 641a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 642a30f8f8cSSatish Balay if (j < n) ncols = j-i; 643a30f8f8cSSatish Balay else ncols = n-i; 644a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 645a30f8f8cSSatish Balay i = j; 646a30f8f8cSSatish Balay } 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 649a30f8f8cSSatish Balay baij->roworiented = r1; 650a30f8f8cSSatish Balay a->roworiented = r2; 651a30f8f8cSSatish Balay b->roworiented = r3; 652a30f8f8cSSatish Balay } 653a30f8f8cSSatish Balay 654a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 655a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 658a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 659a30f8f8cSSatish Balay /* 660a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 661a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 662a30f8f8cSSatish Balay */ 663a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 664a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 665a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 666c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay } 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 671a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 672a30f8f8cSSatish Balay } 673a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 674a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 677a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 678f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 679a30f8f8cSSatish Balay baij->ht_total_ct = 0; 680a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay #endif 683a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 684c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 685a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 686a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay 689a30f8f8cSSatish Balay if (baij->rowvalues) { 690a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 691a30f8f8cSSatish Balay baij->rowvalues = 0; 692a30f8f8cSSatish Balay } 693a30f8f8cSSatish Balay PetscFunctionReturn(0); 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay 6964a2ae208SSatish Balay #undef __FUNCT__ 6974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 698b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 699a30f8f8cSSatish Balay { 700a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 701fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 702a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 703b0a32e0cSBarry Smith PetscViewer sviewer; 704f3ef73ceSBarry Smith PetscViewerFormat format; 705a30f8f8cSSatish Balay 706a30f8f8cSSatish Balay PetscFunctionBegin; 707b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 708fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 709a30f8f8cSSatish Balay if (isascii) { 710b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 711fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 712a30f8f8cSSatish Balay MatInfo info; 713a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 716b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 717a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 719b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 720a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 721b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 722b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 724a30f8f8cSSatish Balay PetscFunctionReturn(0); 725fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 726b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 727a30f8f8cSSatish Balay PetscFunctionReturn(0); 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay } 730a30f8f8cSSatish Balay 731a30f8f8cSSatish Balay if (isdraw) { 732b0a32e0cSBarry Smith PetscDraw draw; 733a30f8f8cSSatish Balay PetscTruth isnull; 734b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 735b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay 738a30f8f8cSSatish Balay if (size == 1) { 739e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 740a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 741a30f8f8cSSatish Balay } else { 742a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 743a30f8f8cSSatish Balay Mat A; 74465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 746b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 747a30f8f8cSSatish Balay MatScalar *a; 748a30f8f8cSSatish Balay 749a30f8f8cSSatish Balay if (!rank) { 750bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 751a30f8f8cSSatish Balay } else { 752f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 753a30f8f8cSSatish Balay } 754b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 755a30f8f8cSSatish Balay 756a30f8f8cSSatish Balay /* copy over the A part */ 75765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 758a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 75982502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 760a30f8f8cSSatish Balay 761a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 762a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 763a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 764a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 765a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 766a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 767a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 768a30f8f8cSSatish Balay col++; a += bs; 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay /* copy over the B part */ 77365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 775a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 776a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 777a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 778a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 779a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 780a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 781a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 782a30f8f8cSSatish Balay col++; a += bs; 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay } 786a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 787a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 789a30f8f8cSSatish Balay /* 790a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 791b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 792a30f8f8cSSatish Balay */ 793b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79465d70643SHong Zhang if (!rank) { 795e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 796a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 797a30f8f8cSSatish Balay } 798b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 799a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 800a30f8f8cSSatish Balay } 801a30f8f8cSSatish Balay PetscFunctionReturn(0); 802a30f8f8cSSatish Balay } 803a30f8f8cSSatish Balay 8044a2ae208SSatish Balay #undef __FUNCT__ 8054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 806b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 807a30f8f8cSSatish Balay { 808a30f8f8cSSatish Balay int ierr; 809a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 810a30f8f8cSSatish Balay 811a30f8f8cSSatish Balay PetscFunctionBegin; 812b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 813fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 814b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 815fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 816a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 817a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 818a30f8f8cSSatish Balay } else { 81929bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 820a30f8f8cSSatish Balay } 821a30f8f8cSSatish Balay PetscFunctionReturn(0); 822a30f8f8cSSatish Balay } 823a30f8f8cSSatish Balay 8244a2ae208SSatish Balay #undef __FUNCT__ 8254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 826a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 827a30f8f8cSSatish Balay { 828a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 829a30f8f8cSSatish Balay int ierr; 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay PetscFunctionBegin; 832a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 833b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 834a30f8f8cSSatish Balay #endif 835a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 836a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 837a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 838a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 839a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 840a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 841a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 842a30f8f8cSSatish Balay #else 843a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 844a30f8f8cSSatish Balay #endif 845a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 846a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 847a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 8489b9367d5SHong Zhang if (baij->slvec0) {ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);} 8499b9367d5SHong Zhang if (baij->slvec1) {ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);} 8509b9367d5SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 851a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 852a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 853a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 854a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 855a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 856a30f8f8cSSatish Balay #endif 857a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 858a30f8f8cSSatish Balay PetscFunctionReturn(0); 859a30f8f8cSSatish Balay } 860a30f8f8cSSatish Balay 8614a2ae208SSatish Balay #undef __FUNCT__ 8624a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPISBAIJ" 863a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 864a30f8f8cSSatish Balay { 865a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 866a30f8f8cSSatish Balay int ierr,nt; 867a30f8f8cSSatish Balay 868a30f8f8cSSatish Balay PetscFunctionBegin; 869a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 870b5df2d14SHong Zhang if (nt != A->n) { 87129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 872a30f8f8cSSatish Balay } 873a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 874b5df2d14SHong Zhang if (nt != A->m) { 87529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 876a30f8f8cSSatish Balay } 87765d70643SHong Zhang 878b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 879b941877fSHong Zhang /* do diagonal part */ 880b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 881b941877fSHong Zhang /* do supperdiagonal part */ 882b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 883b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 884b941877fSHong Zhang /* do subdiagonal part */ 885b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 886b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 887b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 88865d70643SHong Zhang 889a30f8f8cSSatish Balay PetscFunctionReturn(0); 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay 8924a2ae208SSatish Balay #undef __FUNCT__ 8934a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 894a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 895a30f8f8cSSatish Balay { 896de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 897aa482183SHong Zhang int ierr; 898a30f8f8cSSatish Balay 899a30f8f8cSSatish Balay PetscFunctionBegin; 900b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 901b941877fSHong Zhang /* do diagonal part */ 902b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 903b941877fSHong Zhang /* do supperdiagonal part */ 904b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 905de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 906de8b6608SHong Zhang 907b941877fSHong Zhang /* do subdiagonal part */ 908a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 909a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 910a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 911aa482183SHong Zhang 912a30f8f8cSSatish Balay PetscFunctionReturn(0); 913a30f8f8cSSatish Balay } 914a30f8f8cSSatish Balay 9154a2ae208SSatish Balay #undef __FUNCT__ 9164a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 917a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 918a30f8f8cSSatish Balay { 919a30f8f8cSSatish Balay PetscFunctionBegin; 92029bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 92196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay 9244a2ae208SSatish Balay #undef __FUNCT__ 9254a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 926a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 927a30f8f8cSSatish Balay { 928a30f8f8cSSatish Balay PetscFunctionBegin; 92929bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 93096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 931a30f8f8cSSatish Balay } 932a30f8f8cSSatish Balay 933a30f8f8cSSatish Balay /* 934a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 935a30f8f8cSSatish Balay diagonal block 936a30f8f8cSSatish Balay */ 9374a2ae208SSatish Balay #undef __FUNCT__ 9384a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 939a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 940a30f8f8cSSatish Balay { 941a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 942a30f8f8cSSatish Balay int ierr; 943a30f8f8cSSatish Balay 944a30f8f8cSSatish Balay PetscFunctionBegin; 94529bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 946a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 947a30f8f8cSSatish Balay PetscFunctionReturn(0); 948a30f8f8cSSatish Balay } 949a30f8f8cSSatish Balay 9504a2ae208SSatish Balay #undef __FUNCT__ 9514a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 95287828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A) 953a30f8f8cSSatish Balay { 954a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 955a30f8f8cSSatish Balay int ierr; 956a30f8f8cSSatish Balay 957a30f8f8cSSatish Balay PetscFunctionBegin; 958a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 959a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 960a30f8f8cSSatish Balay PetscFunctionReturn(0); 961a30f8f8cSSatish Balay } 962a30f8f8cSSatish Balay 9634a2ae208SSatish Balay #undef __FUNCT__ 9644a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 96587828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 966a30f8f8cSSatish Balay { 967a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 96887828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 969a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 970a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 971a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 972a30f8f8cSSatish Balay 973a30f8f8cSSatish Balay PetscFunctionBegin; 97429bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 975a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 976a30f8f8cSSatish Balay 977a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 978a30f8f8cSSatish Balay /* 979a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 980a30f8f8cSSatish Balay */ 981a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 982a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 983a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 984a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 985a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 986a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 987a30f8f8cSSatish Balay } 98887828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 989a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 990a30f8f8cSSatish Balay } 991a30f8f8cSSatish Balay 99229bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 993a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 994a30f8f8cSSatish Balay 995a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 996a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 997a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 998a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 999a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1000a30f8f8cSSatish Balay nztot = nzA + nzB; 1001a30f8f8cSSatish Balay 1002a30f8f8cSSatish Balay cmap = mat->garray; 1003a30f8f8cSSatish Balay if (v || idx) { 1004a30f8f8cSSatish Balay if (nztot) { 1005a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1006a30f8f8cSSatish Balay int imark = -1; 1007a30f8f8cSSatish Balay if (v) { 1008a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1009a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1010a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1011a30f8f8cSSatish Balay else break; 1012a30f8f8cSSatish Balay } 1013a30f8f8cSSatish Balay imark = i; 1014a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1015a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1016a30f8f8cSSatish Balay } 1017a30f8f8cSSatish Balay if (idx) { 1018a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1019a30f8f8cSSatish Balay if (imark > -1) { 1020a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1021a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay } else { 1024a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1025a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1026a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1027a30f8f8cSSatish Balay else break; 1028a30f8f8cSSatish Balay } 1029a30f8f8cSSatish Balay imark = i; 1030a30f8f8cSSatish Balay } 1031a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1032a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1033a30f8f8cSSatish Balay } 1034a30f8f8cSSatish Balay } else { 1035a30f8f8cSSatish Balay if (idx) *idx = 0; 1036a30f8f8cSSatish Balay if (v) *v = 0; 1037a30f8f8cSSatish Balay } 1038a30f8f8cSSatish Balay } 1039a30f8f8cSSatish Balay *nz = nztot; 1040a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1041a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1042a30f8f8cSSatish Balay PetscFunctionReturn(0); 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay 10454a2ae208SSatish Balay #undef __FUNCT__ 10464a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 104787828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1048a30f8f8cSSatish Balay { 1049a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1050a30f8f8cSSatish Balay 1051a30f8f8cSSatish Balay PetscFunctionBegin; 1052a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 105329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1054a30f8f8cSSatish Balay } 1055a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1056a30f8f8cSSatish Balay PetscFunctionReturn(0); 1057a30f8f8cSSatish Balay } 1058a30f8f8cSSatish Balay 10594a2ae208SSatish Balay #undef __FUNCT__ 10604a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1061a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1062a30f8f8cSSatish Balay { 1063a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1064a30f8f8cSSatish Balay 1065a30f8f8cSSatish Balay PetscFunctionBegin; 1066a30f8f8cSSatish Balay *bs = baij->bs; 1067a30f8f8cSSatish Balay PetscFunctionReturn(0); 1068a30f8f8cSSatish Balay } 1069a30f8f8cSSatish Balay 10704a2ae208SSatish Balay #undef __FUNCT__ 10714a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1072a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1073a30f8f8cSSatish Balay { 1074a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1075a30f8f8cSSatish Balay int ierr; 1076a30f8f8cSSatish Balay 1077a30f8f8cSSatish Balay PetscFunctionBegin; 1078a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1079a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1080a30f8f8cSSatish Balay PetscFunctionReturn(0); 1081a30f8f8cSSatish Balay } 1082a30f8f8cSSatish Balay 10834a2ae208SSatish Balay #undef __FUNCT__ 10844a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1085a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1086a30f8f8cSSatish Balay { 1087a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1088a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1089a30f8f8cSSatish Balay int ierr; 1090a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1091a30f8f8cSSatish Balay 1092a30f8f8cSSatish Balay PetscFunctionBegin; 1093f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1094a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1095a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1096a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1097a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1098a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1099a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1100a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1101a30f8f8cSSatish Balay info->nz_used = isend[0]; 1102a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1103a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1104a30f8f8cSSatish Balay info->memory = isend[3]; 1105a30f8f8cSSatish Balay info->mallocs = isend[4]; 1106a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1107d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1108a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1109a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1110a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1111a30f8f8cSSatish Balay info->memory = irecv[3]; 1112a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1113a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1114d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1115a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1116a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1117a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1118a30f8f8cSSatish Balay info->memory = irecv[3]; 1119a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1120a30f8f8cSSatish Balay } else { 112129bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1122a30f8f8cSSatish Balay } 1123f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1124f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1125f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1126f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1127a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1128a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1129a30f8f8cSSatish Balay info->factor_mallocs = 0; 1130a30f8f8cSSatish Balay PetscFunctionReturn(0); 1131a30f8f8cSSatish Balay } 1132a30f8f8cSSatish Balay 11334a2ae208SSatish Balay #undef __FUNCT__ 11344a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1135a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1136a30f8f8cSSatish Balay { 1137a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1138a30f8f8cSSatish Balay int ierr; 1139a30f8f8cSSatish Balay 1140a30f8f8cSSatish Balay PetscFunctionBegin; 1141e98b92d7SKris Buschelman switch (op) { 1142e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1143e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1144e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1145e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1146e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1147e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1148e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1149a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1150a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1151e98b92d7SKris Buschelman break; 1152e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1153a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1154a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1155a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1156e98b92d7SKris Buschelman break; 1157e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1158e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1159e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1160d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1161b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1162e98b92d7SKris Buschelman break; 1163e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1164a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1165a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1166a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1167e98b92d7SKris Buschelman break; 1168e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1169a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1170e98b92d7SKris Buschelman break; 1171e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 117229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1173e98b92d7SKris Buschelman break; 1174e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1175a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1176e98b92d7SKris Buschelman break; 1177e98b92d7SKris Buschelman default: 117829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1179e98b92d7SKris Buschelman break; 1180a30f8f8cSSatish Balay } 1181a30f8f8cSSatish Balay PetscFunctionReturn(0); 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay 11844a2ae208SSatish Balay #undef __FUNCT__ 11854a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPISBAIJ(" 1186a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1187a30f8f8cSSatish Balay { 1188a30f8f8cSSatish Balay PetscFunctionBegin; 118929bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 119096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1191a30f8f8cSSatish Balay } 1192a30f8f8cSSatish Balay 11934a2ae208SSatish Balay #undef __FUNCT__ 11944a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1195a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1196a30f8f8cSSatish Balay { 1197a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1198a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1199a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1200a30f8f8cSSatish Balay 1201a30f8f8cSSatish Balay PetscFunctionBegin; 1202a30f8f8cSSatish Balay if (ll != rr) { 120329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1204a30f8f8cSSatish Balay } 1205a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1206a30f8f8cSSatish Balay if (rr) { 1207a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 120829bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1209a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1210a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay /*} if (ll) { */ 1212a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 121329bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1214a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1215a30f8f8cSSatish Balay /* } */ 1216a30f8f8cSSatish Balay /* scale the diagonal block */ 1217a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1218a30f8f8cSSatish Balay 1219a30f8f8cSSatish Balay /* if (rr) { */ 1220a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1221a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1222a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1223a30f8f8cSSatish Balay } 1224a30f8f8cSSatish Balay 1225a30f8f8cSSatish Balay PetscFunctionReturn(0); 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 12284a2ae208SSatish Balay #undef __FUNCT__ 12294a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 123087828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag) 1231a30f8f8cSSatish Balay { 1232a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1233a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 123435d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 1235a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1236a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1237a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1238a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1239a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1240a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1241a30f8f8cSSatish Balay IS istmp; 124235d8aa7fSBarry Smith PetscTruth found; 1243a30f8f8cSSatish Balay 1244a30f8f8cSSatish Balay PetscFunctionBegin; 1245a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1246a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1247a30f8f8cSSatish Balay 1248a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 124982502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1251a30f8f8cSSatish Balay procs = nprocs + size; 1252b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 1253a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1254a30f8f8cSSatish Balay idx = rows[i]; 125535d8aa7fSBarry Smith found = PETSC_FALSE; 1256a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1257a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 125835d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 1259a30f8f8cSSatish Balay } 1260a30f8f8cSSatish Balay } 126129bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1262a30f8f8cSSatish Balay } 1263a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1264a30f8f8cSSatish Balay 1265a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 126682502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 1267a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1268a30f8f8cSSatish Balay nmax = work[rank]; 1269a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1270a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1271a30f8f8cSSatish Balay 1272a30f8f8cSSatish Balay /* post receives: */ 1273b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1274b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 1275a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1276a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1277a30f8f8cSSatish Balay } 1278a30f8f8cSSatish Balay 1279a30f8f8cSSatish Balay /* do sends: 1280a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1281a30f8f8cSSatish Balay the ith processor 1282a30f8f8cSSatish Balay */ 1283b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1284b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1285b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 1286a30f8f8cSSatish Balay starts[0] = 0; 1287a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1288a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1289a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1290a30f8f8cSSatish Balay } 1291a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1292a30f8f8cSSatish Balay 1293a30f8f8cSSatish Balay starts[0] = 0; 1294a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1295a30f8f8cSSatish Balay count = 0; 1296a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1297a30f8f8cSSatish Balay if (procs[i]) { 1298a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay 1303a30f8f8cSSatish Balay base = owners[rank]*bs; 1304a30f8f8cSSatish Balay 1305a30f8f8cSSatish Balay /* wait on receives */ 1306b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay source = lens + nrecvs; 1308a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1309a30f8f8cSSatish Balay while (count) { 1310a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1311a30f8f8cSSatish Balay /* unpack receives into our local space */ 1312a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1313a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1314a30f8f8cSSatish Balay lens[imdex] = n; 1315a30f8f8cSSatish Balay slen += n; 1316a30f8f8cSSatish Balay count--; 1317a30f8f8cSSatish Balay } 1318a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay 1320a30f8f8cSSatish Balay /* move the data into the send scatter */ 1321b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 1322a30f8f8cSSatish Balay count = 0; 1323a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1324a30f8f8cSSatish Balay values = rvalues + i*nmax; 1325a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1326a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1327a30f8f8cSSatish Balay } 1328a30f8f8cSSatish Balay } 1329a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1330a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1331a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1332a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay 1334a30f8f8cSSatish Balay /* actually zap the local rows */ 1335a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1336b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay /* 1339a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1340a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1341a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1342a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1343a30f8f8cSSatish Balay 1344a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1345a30f8f8cSSatish Balay */ 1346a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1347ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1348a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1349a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1350a30f8f8cSSatish Balay } else if (diag) { 1351a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1352a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 135329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1354a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1355a30f8f8cSSatish Balay } 1356a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1357a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1358a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1359a30f8f8cSSatish Balay } 1360a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1361a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay } else { 1363a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1364a30f8f8cSSatish Balay } 1365a30f8f8cSSatish Balay 1366a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1367a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1368a30f8f8cSSatish Balay 1369a30f8f8cSSatish Balay /* wait on sends */ 1370a30f8f8cSSatish Balay if (nsends) { 137182502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1372a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1373a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1374a30f8f8cSSatish Balay } 1375a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1376a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1377a30f8f8cSSatish Balay 1378a30f8f8cSSatish Balay PetscFunctionReturn(0); 1379a30f8f8cSSatish Balay } 1380a30f8f8cSSatish Balay 13814a2ae208SSatish Balay #undef __FUNCT__ 13824a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1383a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1384a30f8f8cSSatish Balay { 1385a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1386a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1387a30f8f8cSSatish Balay static int called = 0; 1388a30f8f8cSSatish Balay int ierr; 1389a30f8f8cSSatish Balay 1390a30f8f8cSSatish Balay PetscFunctionBegin; 1391a30f8f8cSSatish Balay if (!a->rank) { 1392a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1393a30f8f8cSSatish Balay } 1394a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1395a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1396a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1397a30f8f8cSSatish Balay PetscFunctionReturn(0); 1398a30f8f8cSSatish Balay } 1399a30f8f8cSSatish Balay 14004a2ae208SSatish Balay #undef __FUNCT__ 14014a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1402a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1403a30f8f8cSSatish Balay { 1404f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1405a30f8f8cSSatish Balay int ierr; 1406a30f8f8cSSatish Balay 1407a30f8f8cSSatish Balay PetscFunctionBegin; 1408a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1409a30f8f8cSSatish Balay PetscFunctionReturn(0); 1410a30f8f8cSSatish Balay } 1411a30f8f8cSSatish Balay 1412a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1413a30f8f8cSSatish Balay 14144a2ae208SSatish Balay #undef __FUNCT__ 14154a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1416a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1417a30f8f8cSSatish Balay { 1418a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1419a30f8f8cSSatish Balay Mat a,b,c,d; 1420a30f8f8cSSatish Balay PetscTruth flg; 1421a30f8f8cSSatish Balay int ierr; 1422a30f8f8cSSatish Balay 1423a30f8f8cSSatish Balay PetscFunctionBegin; 1424b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1425b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1426a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1427a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1428a30f8f8cSSatish Balay 1429a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1430a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1431a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1432a30f8f8cSSatish Balay } 1433a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1434a30f8f8cSSatish Balay PetscFunctionReturn(0); 1435a30f8f8cSSatish Balay } 1436a30f8f8cSSatish Balay 14374a2ae208SSatish Balay #undef __FUNCT__ 14384a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1439273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1440273d9f13SBarry Smith { 1441273d9f13SBarry Smith int ierr; 1442273d9f13SBarry Smith 1443273d9f13SBarry Smith PetscFunctionBegin; 1444273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1445273d9f13SBarry Smith PetscFunctionReturn(0); 1446273d9f13SBarry Smith } 1447a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1448a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1449a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1450a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1451a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1452a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1453a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1454a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1455a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 14622798e883SHong Zhang MatRelax_MPISBAIJ, 1463a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1464a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1465a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1466a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1467a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1468a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1469a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1470a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1471a30f8f8cSSatish Balay 0, 1472a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1473a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1474a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1480b5df2d14SHong Zhang 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1491a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1492a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1495a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1496a30f8f8cSSatish Balay 0, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 15128a124369SBarry Smith MatGetPetscMaps_Petsc, 151324d5174aSHong Zhang 0, 151424d5174aSHong Zhang 0, 151524d5174aSHong Zhang 0, 151624d5174aSHong Zhang 0, 151724d5174aSHong Zhang 0, 151824d5174aSHong Zhang 0, 151924d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1520a30f8f8cSSatish Balay 1521a30f8f8cSSatish Balay 1522a30f8f8cSSatish Balay EXTERN_C_BEGIN 15234a2ae208SSatish Balay #undef __FUNCT__ 15244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1525a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1526a30f8f8cSSatish Balay { 1527a30f8f8cSSatish Balay PetscFunctionBegin; 1528a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1529a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1530a30f8f8cSSatish Balay PetscFunctionReturn(0); 1531a30f8f8cSSatish Balay } 1532a30f8f8cSSatish Balay EXTERN_C_END 1533a30f8f8cSSatish Balay 1534273d9f13SBarry Smith EXTERN_C_BEGIN 15354a2ae208SSatish Balay #undef __FUNCT__ 15364a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1537b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1538b5df2d14SHong Zhang { 1539b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1540ca54ac64SHong Zhang int ierr; 1541b5df2d14SHong Zhang PetscTruth flg; 1542b5df2d14SHong Zhang 1543b5df2d14SHong Zhang PetscFunctionBegin; 1544b5df2d14SHong Zhang 1545b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1546b0a32e0cSBarry Smith B->data = (void*)b; 1547b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1548b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1549b5df2d14SHong Zhang 1550b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1551b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1552b5df2d14SHong Zhang B->mapping = 0; 1553b5df2d14SHong Zhang B->factor = 0; 1554b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1555b5df2d14SHong Zhang 1556b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1557b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1558b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1559b5df2d14SHong Zhang 1560b5df2d14SHong Zhang /* build local table of row and column ownerships */ 156182502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1562273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1563273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1564b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1565b5df2d14SHong Zhang 1566b5df2d14SHong Zhang /* build cache for off array entries formed */ 1567b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1568b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1569b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1570b5df2d14SHong Zhang b->garray = PETSC_NULL; 1571b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1572b5df2d14SHong Zhang 1573f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 157564a35ccbSBarry Smith b->setvalueslen = 0; 1576b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1577b5df2d14SHong Zhang #endif 1578b5df2d14SHong Zhang 1579b5df2d14SHong Zhang /* stuff used in block assembly */ 1580b5df2d14SHong Zhang b->barray = 0; 1581b5df2d14SHong Zhang 1582b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1583b5df2d14SHong Zhang b->lvec = 0; 1584b5df2d14SHong Zhang b->Mvctx = 0; 1585b5df2d14SHong Zhang 1586b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1587b5df2d14SHong Zhang b->rowindices = 0; 1588b5df2d14SHong Zhang b->rowvalues = 0; 1589b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1590b5df2d14SHong Zhang 1591b5df2d14SHong Zhang /* hash table stuff */ 1592b5df2d14SHong Zhang b->ht = 0; 1593b5df2d14SHong Zhang b->hd = 0; 1594b5df2d14SHong Zhang b->ht_size = 0; 1595b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1596b5df2d14SHong Zhang b->ht_fact = 0; 1597b5df2d14SHong Zhang b->ht_total_ct = 0; 1598b5df2d14SHong Zhang b->ht_insert_ct = 0; 1599b5df2d14SHong Zhang 1600b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1601b5df2d14SHong Zhang if (flg) { 1602f6275e2eSBarry Smith PetscReal fact = 1.39; 1603b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 160487828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1605b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1606b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1607b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1608b5df2d14SHong Zhang } 1609b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1610b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1611b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1612b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1613b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1614b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1615b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1616b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1617b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1618b5df2d14SHong Zhang PetscFunctionReturn(0); 1619b5df2d14SHong Zhang } 1620273d9f13SBarry Smith EXTERN_C_END 1621b5df2d14SHong Zhang 16224a2ae208SSatish Balay #undef __FUNCT__ 16234a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1624b5df2d14SHong Zhang /*@C 1625b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1626b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1627b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1628b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1629b5df2d14SHong Zhang 1630b5df2d14SHong Zhang Collective on Mat 1631b5df2d14SHong Zhang 1632b5df2d14SHong Zhang Input Parameters: 1633b5df2d14SHong Zhang + A - the matrix 1634b5df2d14SHong Zhang . bs - size of blockk 1635b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1636b5df2d14SHong Zhang submatrix (same for all local rows) 1637b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 1638b5df2d14SHong Zhang of the in diagonal portion of the local (possibly different for each block 1639b5df2d14SHong Zhang row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1640b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1641b5df2d14SHong Zhang submatrix (same for all local rows). 1642b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1643b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1644b5df2d14SHong Zhang each block row) or PETSC_NULL. 1645b5df2d14SHong Zhang 1646b5df2d14SHong Zhang 1647b5df2d14SHong Zhang Options Database Keys: 1648b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1649b5df2d14SHong Zhang block calculations (much slower) 1650b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1651b5df2d14SHong Zhang 1652b5df2d14SHong Zhang Notes: 1653b5df2d14SHong Zhang 1654b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1655b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1656b5df2d14SHong Zhang 1657b5df2d14SHong Zhang Storage Information: 1658b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1659b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1660b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1661b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1662b5df2d14SHong Zhang 1663b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1664b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1665b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1666b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1667b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1668b5df2d14SHong Zhang 1669b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1670b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1671b5df2d14SHong Zhang 1672b5df2d14SHong Zhang .vb 1673b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1674b5df2d14SHong Zhang ------------------- 1675b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1676b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1677b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1678b5df2d14SHong Zhang ------------------- 1679b5df2d14SHong Zhang .ve 1680b5df2d14SHong Zhang 1681b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1682b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 1683b5df2d14SHong Zhang o (off-diagonal) submatrix. Note that the d and the o submatrices are 1684b5df2d14SHong Zhang stored simply in the MATSEQBAIJ format for compressed row storage. 1685b5df2d14SHong Zhang 1686b5df2d14SHong Zhang Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1687b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1688b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1689b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1690b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1691b5df2d14SHong Zhang matrices. 1692b5df2d14SHong Zhang 1693b5df2d14SHong Zhang Level: intermediate 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1696b5df2d14SHong Zhang 1697b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1698b5df2d14SHong Zhang @*/ 1699b5df2d14SHong Zhang 1700b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1701b5df2d14SHong Zhang { 1702b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1703eb7adc28SSatish Balay int ierr,i,mbs,Mbs; 1704273d9f13SBarry Smith PetscTruth flg2; 1705b5df2d14SHong Zhang 1706b5df2d14SHong Zhang PetscFunctionBegin; 1707273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1708273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1709273d9f13SBarry Smith 1710b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1713435da068SBarry Smith if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1714435da068SBarry Smith if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1715435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1716435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1717b5df2d14SHong Zhang if (d_nnz) { 1718b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1719b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1720b5df2d14SHong Zhang } 1721b5df2d14SHong Zhang } 1722b5df2d14SHong Zhang if (o_nnz) { 1723b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1724b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1725b5df2d14SHong Zhang } 1726b5df2d14SHong Zhang } 172719138431SHong Zhang B->preallocated = PETSC_TRUE; 172819138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 172919138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 17308a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 17318a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1732b5df2d14SHong Zhang 1733b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1734b5df2d14SHong Zhang mbs = B->m/bs; 1735b5df2d14SHong Zhang Mbs = B->M/bs; 1736b5df2d14SHong Zhang if (mbs*bs != B->m) { 173719138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1738b5df2d14SHong Zhang } 1739b5df2d14SHong Zhang 1740b5df2d14SHong Zhang b->bs = bs; 1741b5df2d14SHong Zhang b->bs2 = bs*bs; 1742b5df2d14SHong Zhang b->mbs = mbs; 1743b5df2d14SHong Zhang b->nbs = mbs; 1744b5df2d14SHong Zhang b->Mbs = Mbs; 1745b5df2d14SHong Zhang b->Nbs = Mbs; 1746b5df2d14SHong Zhang 1747b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1748b5df2d14SHong Zhang b->rowners[0] = 0; 1749b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1750b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1751b5df2d14SHong Zhang } 1752b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1753b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1754b5df2d14SHong Zhang b->cstart = b->rstart; 1755b5df2d14SHong Zhang b->cend = b->rend; 1756b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1757b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1758b5df2d14SHong Zhang } 1759b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1760b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1761b5df2d14SHong Zhang 1762b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1763b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1764b5df2d14SHong Zhang 1765b5df2d14SHong Zhang 1766b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1767b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1768b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1769b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang /* build cache for off array entries formed */ 1772b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1773b5df2d14SHong Zhang 1774b5df2d14SHong Zhang PetscFunctionReturn(0); 1775b5df2d14SHong Zhang } 1776b5df2d14SHong Zhang 17774a2ae208SSatish Balay #undef __FUNCT__ 17784a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1779a30f8f8cSSatish Balay /*@C 1780a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1781a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1782a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1783a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1784a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1785a30f8f8cSSatish Balay 1786a30f8f8cSSatish Balay Collective on MPI_Comm 1787a30f8f8cSSatish Balay 1788a30f8f8cSSatish Balay Input Parameters: 1789a30f8f8cSSatish Balay + comm - MPI communicator 1790a30f8f8cSSatish Balay . bs - size of blockk 1791a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1792a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1793a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1794a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1795a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1796a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1797a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1798a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1799a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1800a30f8f8cSSatish Balay submatrix (same for all local rows) 1801a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1802a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1803a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1804a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1805a30f8f8cSSatish Balay submatrix (same for all local rows). 1806a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1807a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1808a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1809a30f8f8cSSatish Balay 1810a30f8f8cSSatish Balay Output Parameter: 1811a30f8f8cSSatish Balay . A - the matrix 1812a30f8f8cSSatish Balay 1813a30f8f8cSSatish Balay Options Database Keys: 1814a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1815a30f8f8cSSatish Balay block calculations (much slower) 1816a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1817a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1818a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1819a30f8f8cSSatish Balay 1820a30f8f8cSSatish Balay Notes: 1821a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1822a30f8f8cSSatish Balay (possibly both). 1823a30f8f8cSSatish Balay 1824a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1825a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1826a30f8f8cSSatish Balay 1827a30f8f8cSSatish Balay Storage Information: 1828a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1829a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1830a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1831a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1832a30f8f8cSSatish Balay 1833a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1834a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1835a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1836a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1837a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1838a30f8f8cSSatish Balay 1839a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1840a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1841a30f8f8cSSatish Balay 1842a30f8f8cSSatish Balay .vb 1843a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1844a30f8f8cSSatish Balay ------------------- 1845a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1846a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1847a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1848a30f8f8cSSatish Balay ------------------- 1849a30f8f8cSSatish Balay .ve 1850a30f8f8cSSatish Balay 1851a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1852a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1853a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1854a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1855a30f8f8cSSatish Balay 1856a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1857a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1858a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1859a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1860a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1861a30f8f8cSSatish Balay matrices. 1862a30f8f8cSSatish Balay 1863a30f8f8cSSatish Balay Level: intermediate 1864a30f8f8cSSatish Balay 1865a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1866a30f8f8cSSatish Balay 1867a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1868a30f8f8cSSatish Balay @*/ 1869a30f8f8cSSatish Balay 1870a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1871a30f8f8cSSatish Balay { 1872273d9f13SBarry Smith int ierr,size; 1873a30f8f8cSSatish Balay 1874a30f8f8cSSatish Balay PetscFunctionBegin; 1875b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1876273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1877273d9f13SBarry Smith if (size > 1) { 1878b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1879b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1880273d9f13SBarry Smith } else { 1881273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1882273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1883273d9f13SBarry Smith } 1884a30f8f8cSSatish Balay PetscFunctionReturn(0); 1885a30f8f8cSSatish Balay } 1886a30f8f8cSSatish Balay 1887a30f8f8cSSatish Balay 18884a2ae208SSatish Balay #undef __FUNCT__ 18894a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1890a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1891a30f8f8cSSatish Balay { 1892a30f8f8cSSatish Balay Mat mat; 1893a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1894a30f8f8cSSatish Balay int ierr,len=0; 1895a30f8f8cSSatish Balay 1896a30f8f8cSSatish Balay PetscFunctionBegin; 1897a30f8f8cSSatish Balay *newmat = 0; 1898b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1899b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1900273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1901b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1902a30f8f8cSSatish Balay a->bs = oldmat->bs; 1903a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1904a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1905a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1906a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1907a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1908a30f8f8cSSatish Balay 1909a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1910a30f8f8cSSatish Balay a->rend = oldmat->rend; 1911a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1912a30f8f8cSSatish Balay a->cend = oldmat->cend; 1913a30f8f8cSSatish Balay a->size = oldmat->size; 1914a30f8f8cSSatish Balay a->rank = oldmat->rank; 1915a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1916a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1917a30f8f8cSSatish Balay a->rowindices = 0; 1918a30f8f8cSSatish Balay a->rowvalues = 0; 1919a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1920a30f8f8cSSatish Balay a->barray = 0; 1921a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1922a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1923a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1924a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1925a30f8f8cSSatish Balay 1926a30f8f8cSSatish Balay /* hash table stuff */ 1927a30f8f8cSSatish Balay a->ht = 0; 1928a30f8f8cSSatish Balay a->hd = 0; 1929a30f8f8cSSatish Balay a->ht_size = 0; 1930a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1931a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1932a30f8f8cSSatish Balay a->ht_total_ct = 0; 1933a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1934a30f8f8cSSatish Balay 193582502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 1936b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1937a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1938a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1939a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1940a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1941a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1942a30f8f8cSSatish Balay if (oldmat->colmap) { 1943a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1944a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1945a30f8f8cSSatish Balay #else 194682502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 1947b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1948a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1949a30f8f8cSSatish Balay #endif 1950a30f8f8cSSatish Balay } else a->colmap = 0; 1951a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 195282502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 1953b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 1954a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1955a30f8f8cSSatish Balay } else a->garray = 0; 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1958b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 1959a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1960a30f8f8cSSatish Balay 1961b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 1962a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1963b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 1964a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1965b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 1966b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1967a30f8f8cSSatish Balay *newmat = mat; 1968a30f8f8cSSatish Balay PetscFunctionReturn(0); 1969a30f8f8cSSatish Balay } 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay #include "petscsys.h" 1972a30f8f8cSSatish Balay 1973273d9f13SBarry Smith EXTERN_C_BEGIN 19744a2ae208SSatish Balay #undef __FUNCT__ 19754a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 1976b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 1977a30f8f8cSSatish Balay { 1978a30f8f8cSSatish Balay Mat A; 1979a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 198087828ca2SBarry Smith PetscScalar *vals,*buf; 1981a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1982a30f8f8cSSatish Balay MPI_Status status; 1983a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1984a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1985a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1986a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1987a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay PetscFunctionBegin; 1990b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1991a30f8f8cSSatish Balay 1992a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1993a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1994a30f8f8cSSatish Balay if (!rank) { 1995b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1996a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1997552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1998a30f8f8cSSatish Balay if (header[3] < 0) { 199929bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2000a30f8f8cSSatish Balay } 2001a30f8f8cSSatish Balay } 2002a30f8f8cSSatish Balay 2003a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2004a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2005a30f8f8cSSatish Balay 200629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2007a30f8f8cSSatish Balay 2008a30f8f8cSSatish Balay /* 2009a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2010a30f8f8cSSatish Balay divisible by the blocksize 2011a30f8f8cSSatish Balay */ 2012a30f8f8cSSatish Balay Mbs = M/bs; 2013a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2014a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2015a30f8f8cSSatish Balay else Mbs++; 2016a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2017b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2018a30f8f8cSSatish Balay } 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay /* determine ownership of all rows */ 2021a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2022a30f8f8cSSatish Balay m = mbs*bs; 2023b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2024a30f8f8cSSatish Balay browners = rowners + size + 1; 2025a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2026a30f8f8cSSatish Balay rowners[0] = 0; 2027a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2028a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2029a30f8f8cSSatish Balay rstart = rowners[rank]; 2030a30f8f8cSSatish Balay rend = rowners[rank+1]; 2031a30f8f8cSSatish Balay 2032a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 203382502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2034a30f8f8cSSatish Balay if (!rank) { 2035b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2036a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2037a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 203882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2039a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2040a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2041a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2042a30f8f8cSSatish Balay } else { 2043a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2044a30f8f8cSSatish Balay } 2045a30f8f8cSSatish Balay 20460222edb1SHong Zhang if (!rank) { /* procs[0] */ 2047a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 204882502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2049a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2050a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2051a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2052a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2053a30f8f8cSSatish Balay } 2054a30f8f8cSSatish Balay } 2055a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2056a30f8f8cSSatish Balay 2057a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2058a30f8f8cSSatish Balay maxnz = 0; 2059a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2060a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2061a30f8f8cSSatish Balay } 206282502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2063a30f8f8cSSatish Balay 2064a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2065a30f8f8cSSatish Balay nz = procsnz[0]; 206682502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2067a30f8f8cSSatish Balay mycols = ibuf; 2068a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2069a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2070a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2073a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2074a30f8f8cSSatish Balay nz = procsnz[i]; 2075a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2076a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2077a30f8f8cSSatish Balay } 2078a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2079a30f8f8cSSatish Balay if (size != 1) { 2080a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2081a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2082a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2083a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay } 2085a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20860222edb1SHong Zhang } else { /* procs[i], i>0 */ 2087a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2088a30f8f8cSSatish Balay nz = 0; 2089a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2090a30f8f8cSSatish Balay nz += locrowlens[i]; 2091a30f8f8cSSatish Balay } 209282502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2093a30f8f8cSSatish Balay mycols = ibuf; 2094a30f8f8cSSatish Balay /* receive message of column indices*/ 2095a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2096a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 209729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2098a30f8f8cSSatish Balay } 2099a30f8f8cSSatish Balay 2100a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 210182502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2102a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 210382502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2104a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2105a30f8f8cSSatish Balay masked1 = mask + Mbs; 2106a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2107a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2108a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2109a30f8f8cSSatish Balay dcount = 0; 2110a30f8f8cSSatish Balay odcount = 0; 2111a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2112a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2113a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21140222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2115a30f8f8cSSatish Balay if (!mask[tmp]) { 2116a30f8f8cSSatish Balay mask[tmp] = 1; 21170222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21180222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2119a30f8f8cSSatish Balay } 2120a30f8f8cSSatish Balay } 2121a30f8f8cSSatish Balay rowcount++; 2122a30f8f8cSSatish Balay } 2123a30f8f8cSSatish Balay 21240222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21250222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2126a30f8f8cSSatish Balay 2127a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2128a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2129a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2130a30f8f8cSSatish Balay } 2131a30f8f8cSSatish Balay 2132a30f8f8cSSatish Balay /* create our matrix */ 21337e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2134bfe19f1aSHong Zhang CHKERRQ(ierr); 2135a30f8f8cSSatish Balay A = *newmat; 2136273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2137a30f8f8cSSatish Balay 2138a30f8f8cSSatish Balay if (!rank) { 213987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2140a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2141a30f8f8cSSatish Balay nz = procsnz[0]; 2142a30f8f8cSSatish Balay vals = buf; 2143a30f8f8cSSatish Balay mycols = ibuf; 2144a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2145a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2147a30f8f8cSSatish Balay 2148a30f8f8cSSatish Balay /* insert into matrix */ 2149a30f8f8cSSatish Balay jj = rstart*bs; 2150a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21517e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2152a30f8f8cSSatish Balay mycols += locrowlens[i]; 2153a30f8f8cSSatish Balay vals += locrowlens[i]; 2154a30f8f8cSSatish Balay jj++; 2155a30f8f8cSSatish Balay } 21567e06b45fSHong Zhang 2157a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2158a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2159a30f8f8cSSatish Balay nz = procsnz[i]; 2160a30f8f8cSSatish Balay vals = buf; 2161a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay } 2164a30f8f8cSSatish Balay /* the last proc */ 2165a30f8f8cSSatish Balay if (size != 1){ 2166a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2167a30f8f8cSSatish Balay vals = buf; 2168a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2169a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2170a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay } 2172a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21737e06b45fSHong Zhang 2174a30f8f8cSSatish Balay } else { 2175a30f8f8cSSatish Balay /* receive numeric values */ 217687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay /* receive message of values*/ 2179a30f8f8cSSatish Balay vals = buf; 2180a30f8f8cSSatish Balay mycols = ibuf; 2181a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 218329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2184a30f8f8cSSatish Balay 2185a30f8f8cSSatish Balay /* insert into matrix */ 2186a30f8f8cSSatish Balay jj = rstart*bs; 2187a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2188a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay mycols += locrowlens[i]; 2190a30f8f8cSSatish Balay vals += locrowlens[i]; 2191a30f8f8cSSatish Balay jj++; 2192a30f8f8cSSatish Balay } 2193a30f8f8cSSatish Balay } 21947e06b45fSHong Zhang 2195a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2203a30f8f8cSSatish Balay PetscFunctionReturn(0); 2204a30f8f8cSSatish Balay } 2205273d9f13SBarry Smith EXTERN_C_END 2206a30f8f8cSSatish Balay 22074a2ae208SSatish Balay #undef __FUNCT__ 22084a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2209a30f8f8cSSatish Balay /*@ 2210a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2211a30f8f8cSSatish Balay 2212a30f8f8cSSatish Balay Input Parameters: 2213a30f8f8cSSatish Balay . mat - the matrix 2214a30f8f8cSSatish Balay . fact - factor 2215a30f8f8cSSatish Balay 2216a30f8f8cSSatish Balay Collective on Mat 2217a30f8f8cSSatish Balay 2218a30f8f8cSSatish Balay Level: advanced 2219a30f8f8cSSatish Balay 2220a30f8f8cSSatish Balay Notes: 2221a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2222a30f8f8cSSatish Balay 2223a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2224a30f8f8cSSatish Balay 2225a30f8f8cSSatish Balay .seealso: MatSetOption() 2226a30f8f8cSSatish Balay @*/ 2227a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2228a30f8f8cSSatish Balay { 2229a30f8f8cSSatish Balay PetscFunctionBegin; 223029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 223196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2232a30f8f8cSSatish Balay } 223324d5174aSHong Zhang 22344a2ae208SSatish Balay #undef __FUNCT__ 22354a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 223624d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 223724d5174aSHong Zhang { 223824d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2239f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2240ca54ac64SHong Zhang PetscReal atmp; 224187828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2242ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2243154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 224487828ca2SBarry Smith PetscScalar *va; 22458a1c53f2SBarry Smith MatScalar *ba; 2246f4c0e9e4SHong Zhang MPI_Status stat; 224724d5174aSHong Zhang 224824d5174aSHong Zhang PetscFunctionBegin; 2249d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2250f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2251f4c0e9e4SHong Zhang 2252ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2253ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2254f4c0e9e4SHong Zhang 2255f4c0e9e4SHong Zhang bs = a->bs; 2256f4c0e9e4SHong Zhang mbs = a->mbs; 2257f4c0e9e4SHong Zhang Mbs = a->Mbs; 2258f4c0e9e4SHong Zhang ba = b->a; 2259f4c0e9e4SHong Zhang bi = b->i; 2260f4c0e9e4SHong Zhang bj = b->j; 2261ca54ac64SHong Zhang /* 2262f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2263f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2264ca54ac64SHong Zhang */ 2265f4c0e9e4SHong Zhang 2266f4c0e9e4SHong Zhang /* find ownerships */ 2267f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2268f4c0e9e4SHong Zhang /* 226904d41228SHong Zhang if (!rank){ 227004d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2271f4c0e9e4SHong Zhang } 2272f4c0e9e4SHong Zhang */ 2273f4c0e9e4SHong Zhang 2274f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 227582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2276ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2277f4c0e9e4SHong Zhang 2278f4c0e9e4SHong Zhang /* row_max for B */ 2279b8475685SHong Zhang if (rank != size-1){ 2280f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2281f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2282f4c0e9e4SHong Zhang brow = bs*i; 2283f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2284f4c0e9e4SHong Zhang bcol = bs*(*bj); 2285f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2286ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 228704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2288ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2289f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2290f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2291ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2292f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2293ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2294f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2295f4c0e9e4SHong Zhang } 2296f4c0e9e4SHong Zhang } 2297f4c0e9e4SHong Zhang bj++; 2298f4c0e9e4SHong Zhang } 2299f4c0e9e4SHong Zhang } 230004d41228SHong Zhang /* 230104d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 230204d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 230304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 230404d41228SHong Zhang */ 2305f4c0e9e4SHong Zhang 2306f4c0e9e4SHong Zhang /* send values to its owners */ 2307f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2308f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2309ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2310d7d1e502SBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2311ca54ac64SHong Zhang /* 231204d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2313f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2314ca54ac64SHong Zhang */ 2315ca54ac64SHong Zhang } 2316f4c0e9e4SHong Zhang } 2317f4c0e9e4SHong Zhang 2318f4c0e9e4SHong Zhang /* receive values */ 2319ca54ac64SHong Zhang if (rank){ 2320f4c0e9e4SHong Zhang rvalues = work; 2321ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2322f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2323d7d1e502SBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2324f4c0e9e4SHong Zhang /* process values */ 2325f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2326ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2327f4c0e9e4SHong Zhang } 2328ca54ac64SHong Zhang /* 232904d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2330f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2331ca54ac64SHong Zhang */ 2332f4c0e9e4SHong Zhang } 2333ca54ac64SHong Zhang } 2334f4c0e9e4SHong Zhang 2335f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2336ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 233724d5174aSHong Zhang PetscFunctionReturn(0); 233824d5174aSHong Zhang } 23392798e883SHong Zhang 23402798e883SHong Zhang #undef __FUNCT__ 23412798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2342c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 23432798e883SHong Zhang { 23442798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 23452798e883SHong Zhang int ierr; 2346d05c616dSSatish Balay PetscScalar mone=-1.0; 23472798e883SHong Zhang Vec lvec1,bb1; 23482798e883SHong Zhang 23492798e883SHong Zhang PetscFunctionBegin; 2350*91723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 23512798e883SHong Zhang if (mat->bs > 1) 23522798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 23532798e883SHong Zhang 2354c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 23552798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2356c14dc6b6SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 23572798e883SHong Zhang its--; 23582798e883SHong Zhang } 23592798e883SHong Zhang 23602798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 23612798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 23622798e883SHong Zhang while (its--){ 23632798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 23642798e883SHong Zhang 23652798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 23662798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 23672798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 23682798e883SHong Zhang 23692798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 23702798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 23712798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 23722798e883SHong Zhang 23732798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 23742798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 23752798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 23762798e883SHong Zhang 23772798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 23782798e883SHong Zhang 2379c14dc6b6SHong Zhang /* diagonal sweep */ 2380862afb7bSHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 23812798e883SHong Zhang } 23822798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 23832798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2384c14dc6b6SHong Zhang } else { 2385c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2386c14dc6b6SHong Zhang } 23872798e883SHong Zhang PetscFunctionReturn(0); 23882798e883SHong Zhang } 23892798e883SHong Zhang 2390