1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 16805b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 19205b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 217899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 218899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 219899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 2371302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 238f65c83cfSHong Zhang MatScalar *v_loc=0; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if(!baij->donotstash){ 2431302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 24482502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay for (i=0; i<m; i++) { 248a30f8f8cSSatish Balay if (im[i] < 0) continue; 2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 250899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 251a30f8f8cSSatish Balay #endif 252a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 253a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 254a30f8f8cSSatish Balay for (j=0; j<n; j++) { 25501b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 25601b2bd88SHong Zhang if (a->ignore_ltriangular){ 25701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 25801b2bd88SHong Zhang } else { 25901b2bd88SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 26001b2bd88SHong Zhang } 26101b2bd88SHong Zhang } 262a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 263a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 264a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 265a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 266a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 267a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 268a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 269a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 271899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);} 272a30f8f8cSSatish Balay #endif 273a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 274a30f8f8cSSatish Balay if (mat->was_assembled) { 275a30f8f8cSSatish Balay if (!baij->colmap) { 276653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 277a30f8f8cSSatish Balay } 278a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 279a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 28071730473SSatish Balay col = col - 1; 281a30f8f8cSSatish Balay #else 28271730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 283a30f8f8cSSatish Balay #endif 284a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 285a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 286a30f8f8cSSatish Balay col = in[j]; 287a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 288a30f8f8cSSatish Balay B = baij->B; 289a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 290a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 291a30f8f8cSSatish Balay ba=b->a; 29271730473SSatish Balay } else col += in[j]%bs; 293a30f8f8cSSatish Balay } else col = in[j]; 294a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 295a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 296a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 297a30f8f8cSSatish Balay } 298a30f8f8cSSatish Balay } 299a30f8f8cSSatish Balay } else { /* off processor entry */ 300a30f8f8cSSatish Balay if (!baij->donotstash) { 301a30f8f8cSSatish Balay n_loc = 0; 302a30f8f8cSSatish Balay for (j=0; j<n; j++){ 303f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 304a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 305a30f8f8cSSatish Balay if (roworiented) { 306a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 307a30f8f8cSSatish Balay } else { 308a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 309a30f8f8cSSatish Balay } 310a30f8f8cSSatish Balay n_loc++; 311a30f8f8cSSatish Balay } 312a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 313a30f8f8cSSatish Balay } 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay } 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay if(!baij->donotstash){ 318a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 319a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 320a30f8f8cSSatish Balay } 321a30f8f8cSSatish Balay PetscFunctionReturn(0); 322a30f8f8cSSatish Balay } 323a30f8f8cSSatish Balay 3244a2ae208SSatish Balay #undef __FUNCT__ 325e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3261302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 327a30f8f8cSSatish Balay { 3280880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 329f15d580aSBarry Smith const MatScalar *value; 330f15d580aSBarry Smith MatScalar *barray=baij->barray; 3310880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 332dfbe8321SBarry Smith PetscErrorCode ierr; 333899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 334899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 335899cda47SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2; 3360880e062SHong Zhang 337a30f8f8cSSatish Balay PetscFunctionBegin; 3380880e062SHong Zhang if(!barray) { 3390880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3400880e062SHong Zhang baij->barray = barray; 3410880e062SHong Zhang } 3420880e062SHong Zhang 3430880e062SHong Zhang if (roworiented) { 3440880e062SHong Zhang stepval = (n-1)*bs; 3450880e062SHong Zhang } else { 3460880e062SHong Zhang stepval = (m-1)*bs; 3470880e062SHong Zhang } 3480880e062SHong Zhang for (i=0; i<m; i++) { 3490880e062SHong Zhang if (im[i] < 0) continue; 3502515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 35177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3520880e062SHong Zhang #endif 3530880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3540880e062SHong Zhang row = im[i] - rstart; 3550880e062SHong Zhang for (j=0; j<n; j++) { 3560880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3570880e062SHong Zhang if ((roworiented) && (n == 1)) { 358f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3590880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 360f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3610880e062SHong Zhang } else { /* Here a copy is required */ 3620880e062SHong Zhang if (roworiented) { 3630880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3640880e062SHong Zhang } else { 3650880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3660880e062SHong Zhang } 3670880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3680880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3690880e062SHong Zhang *barray++ = *value++; 3700880e062SHong Zhang } 3710880e062SHong Zhang } 3720880e062SHong Zhang barray -=bs2; 3730880e062SHong Zhang } 3740880e062SHong Zhang 3750880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3760880e062SHong Zhang col = in[j] - cstart; 3770880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3780880e062SHong Zhang } 3790880e062SHong Zhang else if (in[j] < 0) continue; 3802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 38177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3820880e062SHong Zhang #endif 3830880e062SHong Zhang else { 3840880e062SHong Zhang if (mat->was_assembled) { 3850880e062SHong Zhang if (!baij->colmap) { 386653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3870880e062SHong Zhang } 3880880e062SHong Zhang 3892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3900880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3911302d50aSBarry Smith { PetscInt data; 3920880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3930880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3940880e062SHong Zhang } 3950880e062SHong Zhang #else 3960880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3970880e062SHong Zhang #endif 3980880e062SHong Zhang #endif 3990880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4000880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4010880e062SHong Zhang col = (col - 1)/bs; 4020880e062SHong Zhang #else 4030880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4040880e062SHong Zhang #endif 4050880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4060880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4070880e062SHong Zhang col = in[j]; 4080880e062SHong Zhang } 4090880e062SHong Zhang } 4100880e062SHong Zhang else col = in[j]; 411e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4120880e062SHong Zhang } 4130880e062SHong Zhang } 4140880e062SHong Zhang } else { 4150880e062SHong Zhang if (!baij->donotstash) { 4160880e062SHong Zhang if (roworiented) { 4170880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4180880e062SHong Zhang } else { 4190880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4200880e062SHong Zhang } 4210880e062SHong Zhang } 4220880e062SHong Zhang } 4230880e062SHong Zhang } 4240880e062SHong Zhang PetscFunctionReturn(0); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay 4274a2ae208SSatish Balay #undef __FUNCT__ 4284a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4291302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 430a30f8f8cSSatish Balay { 431f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4326849ba73SBarry Smith PetscErrorCode ierr; 433899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 434899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 435a30f8f8cSSatish Balay 436a30f8f8cSSatish Balay PetscFunctionBegin; 437a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43877431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 439899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 440a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 441a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 442a30f8f8cSSatish Balay for (j=0; j<n; j++) { 44377431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 444899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 445a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 446a30f8f8cSSatish Balay col = idxn[j] - bscstart; 447c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 448a30f8f8cSSatish Balay } else { 449a30f8f8cSSatish Balay if (!baij->colmap) { 450653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 451a30f8f8cSSatish Balay } 452a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 453a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 454a30f8f8cSSatish Balay data --; 455a30f8f8cSSatish Balay #else 456a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 457a30f8f8cSSatish Balay #endif 458a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 459a30f8f8cSSatish Balay else { 460a30f8f8cSSatish Balay col = data + idxn[j]%bs; 461e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 462a30f8f8cSSatish Balay } 463a30f8f8cSSatish Balay } 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay } else { 46629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 467a30f8f8cSSatish Balay } 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay PetscFunctionReturn(0); 470a30f8f8cSSatish Balay } 471a30f8f8cSSatish Balay 4724a2ae208SSatish Balay #undef __FUNCT__ 4734a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 474dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 475a30f8f8cSSatish Balay { 476a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 477dfbe8321SBarry Smith PetscErrorCode ierr; 478a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 479a30f8f8cSSatish Balay 480a30f8f8cSSatish Balay PetscFunctionBegin; 481a30f8f8cSSatish Balay if (baij->size == 1) { 482a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 483a30f8f8cSSatish Balay } else { 484a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 485f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 486a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 487a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 488a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 489a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 490d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 491a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 492a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4930b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4940b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4950b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4960b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 497899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 498899cda47SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs; 4990b8dc8d2SHong Zhang MatScalar *v; 5000b8dc8d2SHong Zhang 501899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 502899cda47SBarry Smith rsum2 = rsum + mat->cmap.N; 503899cda47SBarry Smith ierr = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 5040b8dc8d2SHong Zhang /* Amat */ 5050b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5060b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5070b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5080b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5090b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5100b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5110b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5120b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5130b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5140b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5150b8dc8d2SHong Zhang /* non-diagonal block */ 5160b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5170b8dc8d2SHong Zhang } 5180b8dc8d2SHong Zhang } 5190b8dc8d2SHong Zhang } 5200b8dc8d2SHong Zhang } 5210b8dc8d2SHong Zhang /* Bmat */ 5220b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5230b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5240b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5250b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5260b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5270b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5280b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5290b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5300b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5310b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5320b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5330b8dc8d2SHong Zhang } 5340b8dc8d2SHong Zhang } 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang } 537899cda47SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5380b8dc8d2SHong Zhang *norm = 0.0; 539899cda47SBarry Smith for (col=0; col<mat->cmap.N; col++) { 5400b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5410b8dc8d2SHong Zhang } 5420b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 543a30f8f8cSSatish Balay } else { 54429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay } 547a30f8f8cSSatish Balay PetscFunctionReturn(0); 548a30f8f8cSSatish Balay } 549a30f8f8cSSatish Balay 5504a2ae208SSatish Balay #undef __FUNCT__ 5514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 552dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 553a30f8f8cSSatish Balay { 554a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 555dfbe8321SBarry Smith PetscErrorCode ierr; 5561302d50aSBarry Smith PetscInt nstash,reallocs; 557a30f8f8cSSatish Balay InsertMode addv; 558a30f8f8cSSatish Balay 559a30f8f8cSSatish Balay PetscFunctionBegin; 560a30f8f8cSSatish Balay if (baij->donotstash) { 561a30f8f8cSSatish Balay PetscFunctionReturn(0); 562a30f8f8cSSatish Balay } 563a30f8f8cSSatish Balay 564a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 565a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 566a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 570a30f8f8cSSatish Balay 571899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 572899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 573a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 574ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 575a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 576ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 577a30f8f8cSSatish Balay PetscFunctionReturn(0); 578a30f8f8cSSatish Balay } 579a30f8f8cSSatish Balay 5804a2ae208SSatish Balay #undef __FUNCT__ 5814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 582dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 583a30f8f8cSSatish Balay { 584a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 585a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5866849ba73SBarry Smith PetscErrorCode ierr; 58713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5881302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 58913f74950SBarry Smith PetscMPIInt n; 590a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 591a30f8f8cSSatish Balay MatScalar *val; 592a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 593a30f8f8cSSatish Balay 594*91c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 595a30f8f8cSSatish Balay PetscFunctionBegin; 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay if (!baij->donotstash) { 598a30f8f8cSSatish Balay while (1) { 599a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 600a30f8f8cSSatish Balay if (!flg) break; 601a30f8f8cSSatish Balay 602a30f8f8cSSatish Balay for (i=0; i<n;) { 603a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 604a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 605a30f8f8cSSatish Balay if (j < n) ncols = j-i; 606a30f8f8cSSatish Balay else ncols = n-i; 607a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 608a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 609a30f8f8cSSatish Balay i = j; 610a30f8f8cSSatish Balay } 611a30f8f8cSSatish Balay } 612a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 613a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 614a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 615a30f8f8cSSatish Balay restore the original flags */ 616a30f8f8cSSatish Balay r1 = baij->roworiented; 617a30f8f8cSSatish Balay r2 = a->roworiented; 618*91c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 619a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 620a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 621*91c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 622a30f8f8cSSatish Balay while (1) { 623a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 624a30f8f8cSSatish Balay if (!flg) break; 625a30f8f8cSSatish Balay 626a30f8f8cSSatish Balay for (i=0; i<n;) { 627a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 628a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 629a30f8f8cSSatish Balay if (j < n) ncols = j-i; 630a30f8f8cSSatish Balay else ncols = n-i; 631a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 632a30f8f8cSSatish Balay i = j; 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay } 635a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 636a30f8f8cSSatish Balay baij->roworiented = r1; 637a30f8f8cSSatish Balay a->roworiented = r2; 638*91c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay 641a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 642a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 643a30f8f8cSSatish Balay 644a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 645a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 646a30f8f8cSSatish Balay /* 647a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 648a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 649a30f8f8cSSatish Balay */ 650a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 651a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 652a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 653c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 654a30f8f8cSSatish Balay } 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65840781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 659a30f8f8cSSatish Balay } 660*91c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 661a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 662a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 663a30f8f8cSSatish Balay 664a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 665a30f8f8cSSatish Balay baij->rowvalues = 0; 6665222a1afSHong Zhang 667a30f8f8cSSatish Balay PetscFunctionReturn(0); 668a30f8f8cSSatish Balay } 669a30f8f8cSSatish Balay 6704a2ae208SSatish Balay #undef __FUNCT__ 6714a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6726849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 673a30f8f8cSSatish Balay { 674a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 675dfbe8321SBarry Smith PetscErrorCode ierr; 676899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 6771302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 67832077d6dSBarry Smith PetscTruth iascii,isdraw; 679b0a32e0cSBarry Smith PetscViewer sviewer; 680f3ef73ceSBarry Smith PetscViewerFormat format; 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay PetscFunctionBegin; 68332077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 684fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68532077d6dSBarry Smith if (iascii) { 686b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 687456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 688a30f8f8cSSatish Balay MatInfo info; 689a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 690a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 69177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 692899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 693899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 694a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 696a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 698b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 699a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 700a30f8f8cSSatish Balay PetscFunctionReturn(0); 701fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 70277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 703a30f8f8cSSatish Balay PetscFunctionReturn(0); 704c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 705c1490034SHong Zhang PetscFunctionReturn(0); 706a30f8f8cSSatish Balay } 707a30f8f8cSSatish Balay } 708a30f8f8cSSatish Balay 709a30f8f8cSSatish Balay if (isdraw) { 710b0a32e0cSBarry Smith PetscDraw draw; 711a30f8f8cSSatish Balay PetscTruth isnull; 712b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 713b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 714a30f8f8cSSatish Balay } 715a30f8f8cSSatish Balay 716a30f8f8cSSatish Balay if (size == 1) { 717e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 719a30f8f8cSSatish Balay } else { 720a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 721a30f8f8cSSatish Balay Mat A; 72265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 72365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 724899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 725a30f8f8cSSatish Balay MatScalar *a; 726a30f8f8cSSatish Balay 727f204ca49SKris Buschelman /* Should this be the same type as mat? */ 728f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 729a30f8f8cSSatish Balay if (!rank) { 730f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 731a30f8f8cSSatish Balay } else { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 733a30f8f8cSSatish Balay } 734f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 735899cda47SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 737a30f8f8cSSatish Balay 738a30f8f8cSSatish Balay /* copy over the A part */ 73965d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 740a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7411302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 742a30f8f8cSSatish Balay 743a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 744899cda47SBarry Smith rvals[0] = mat->rmap.rstart + bs*i; 745a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 746a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 747899cda47SBarry Smith col = mat->cmap.rstart+aj[j]*bs; 748a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 749a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 750a30f8f8cSSatish Balay col++; a += bs; 751a30f8f8cSSatish Balay } 752a30f8f8cSSatish Balay } 753a30f8f8cSSatish Balay } 754a30f8f8cSSatish Balay /* copy over the B part */ 75565d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75665d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 757a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 758899cda47SBarry Smith rvals[0] = mat->rmap.rstart + bs; 759a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 760a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 761a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 762a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 763a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 764a30f8f8cSSatish Balay col++; a += bs; 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay } 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 769a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 770a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 771a30f8f8cSSatish Balay /* 772a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 773b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 774a30f8f8cSSatish Balay */ 775b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77665d70643SHong Zhang if (!rank) { 777e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 778a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 779a30f8f8cSSatish Balay } 780b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 781a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay PetscFunctionReturn(0); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay 7864a2ae208SSatish Balay #undef __FUNCT__ 7874a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 788dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 789a30f8f8cSSatish Balay { 790dfbe8321SBarry Smith PetscErrorCode ierr; 79132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 792a30f8f8cSSatish Balay 793a30f8f8cSSatish Balay PetscFunctionBegin; 79432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 795fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 796b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 797fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 79832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 799a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 800a30f8f8cSSatish Balay } else { 8011302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 802a30f8f8cSSatish Balay } 803a30f8f8cSSatish Balay PetscFunctionReturn(0); 804a30f8f8cSSatish Balay } 805a30f8f8cSSatish Balay 8064a2ae208SSatish Balay #undef __FUNCT__ 8074a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 808dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 809a30f8f8cSSatish Balay { 810a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 811dfbe8321SBarry Smith PetscErrorCode ierr; 812a30f8f8cSSatish Balay 813a30f8f8cSSatish Balay PetscFunctionBegin; 814a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 815899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 816a30f8f8cSSatish Balay #endif 817a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 818a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 819a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 820a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 821a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 822a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 823a30f8f8cSSatish Balay #else 82405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 825a30f8f8cSSatish Balay #endif 82605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 827a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 828a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 82940781036SHong Zhang if (baij->slvec0) { 83040781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 83140781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 83240781036SHong Zhang } 83340781036SHong Zhang if (baij->slvec1) { 83440781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83540781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83640781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 83740781036SHong Zhang } 83840781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 83905b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 84005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 84105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 842a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 84305b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 844a30f8f8cSSatish Balay #endif 845899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 846a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 847901853e0SKris Buschelman 848901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 849901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 850901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 851901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 852a30f8f8cSSatish Balay PetscFunctionReturn(0); 853a30f8f8cSSatish Balay } 854a30f8f8cSSatish Balay 8554a2ae208SSatish Balay #undef __FUNCT__ 856a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 857dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 858a9d4b620SHong Zhang { 859a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 860dfbe8321SBarry Smith PetscErrorCode ierr; 861899cda47SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap.bs; 862a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 863a9d4b620SHong Zhang 864a9d4b620SHong Zhang PetscFunctionBegin; 865a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 866899cda47SBarry Smith if (nt != A->cmap.n) { 867a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 868a9d4b620SHong Zhang } 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang /* diagonal part */ 871a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8722dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 873a9d4b620SHong Zhang 874a9d4b620SHong Zhang /* subdiagonal part */ 875a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 876899cda47SBarry Smith CHKMEMQ; 877a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8781ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8791ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 880899cda47SBarry Smith CHKMEMQ; 881a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 882899cda47SBarry Smith CHKMEMQ; 8831ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 884a9d4b620SHong Zhang 885899cda47SBarry Smith CHKMEMQ; 886a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 887899cda47SBarry Smith CHKMEMQ; 8881ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 889899cda47SBarry Smith CHKMEMQ; 890a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 891899cda47SBarry Smith CHKMEMQ; 892a9d4b620SHong Zhang /* supperdiagonal part */ 893a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 894899cda47SBarry Smith CHKMEMQ; 895a9d4b620SHong Zhang PetscFunctionReturn(0); 896a9d4b620SHong Zhang } 897a9d4b620SHong Zhang 898a9d4b620SHong Zhang #undef __FUNCT__ 89940781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 900dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 901a30f8f8cSSatish Balay { 902a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 903dfbe8321SBarry Smith PetscErrorCode ierr; 9041302d50aSBarry Smith PetscInt nt; 905a30f8f8cSSatish Balay 906a30f8f8cSSatish Balay PetscFunctionBegin; 907a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 908899cda47SBarry Smith if (nt != A->cmap.n) { 90929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 910a30f8f8cSSatish Balay } 911a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 912899cda47SBarry Smith if (nt != A->rmap.N) { 91329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 914a30f8f8cSSatish Balay } 91565d70643SHong Zhang 916b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 917b941877fSHong Zhang /* do diagonal part */ 918b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 919b941877fSHong Zhang /* do supperdiagonal part */ 920b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 921b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 922b941877fSHong Zhang /* do subdiagonal part */ 923b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 924b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 925b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 92665d70643SHong Zhang 927a30f8f8cSSatish Balay PetscFunctionReturn(0); 928a30f8f8cSSatish Balay } 929a30f8f8cSSatish Balay 9304a2ae208SSatish Balay #undef __FUNCT__ 9314a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 932dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 933a30f8f8cSSatish Balay { 934de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 935dfbe8321SBarry Smith PetscErrorCode ierr; 936899cda47SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap.bs; 937a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 938a9d4b620SHong Zhang 939a9d4b620SHong Zhang PetscFunctionBegin; 940a9d4b620SHong Zhang /* 94156faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 94256faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 943a9d4b620SHong Zhang */ 944a9d4b620SHong Zhang /* diagonal part */ 945a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9462dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 947a9d4b620SHong Zhang 948a9d4b620SHong Zhang /* subdiagonal part */ 949a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 950a9d4b620SHong Zhang 951a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9521ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9531ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 954a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9551ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 956a9d4b620SHong Zhang 957a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9581ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 959a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 960a9d4b620SHong Zhang 961a9d4b620SHong Zhang /* supperdiagonal part */ 962a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 963a9d4b620SHong Zhang 964a9d4b620SHong Zhang PetscFunctionReturn(0); 965a9d4b620SHong Zhang } 966a9d4b620SHong Zhang 967a9d4b620SHong Zhang #undef __FUNCT__ 968a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 969dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 970a9d4b620SHong Zhang { 971a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 972dfbe8321SBarry Smith PetscErrorCode ierr; 973a30f8f8cSSatish Balay 974a30f8f8cSSatish Balay PetscFunctionBegin; 975b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 976b941877fSHong Zhang /* do diagonal part */ 977b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 978b941877fSHong Zhang /* do supperdiagonal part */ 979b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 980de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 981de8b6608SHong Zhang 982b941877fSHong Zhang /* do subdiagonal part */ 983a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 984a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 985a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 986aa482183SHong Zhang 987a30f8f8cSSatish Balay PetscFunctionReturn(0); 988a30f8f8cSSatish Balay } 989a30f8f8cSSatish Balay 990a30f8f8cSSatish Balay /* 991a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 992a30f8f8cSSatish Balay diagonal block 993a30f8f8cSSatish Balay */ 9944a2ae208SSatish Balay #undef __FUNCT__ 9954a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 996dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 997a30f8f8cSSatish Balay { 998a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 999dfbe8321SBarry Smith PetscErrorCode ierr; 1000a30f8f8cSSatish Balay 1001a30f8f8cSSatish Balay PetscFunctionBegin; 1002899cda47SBarry Smith /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1003a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1004a30f8f8cSSatish Balay PetscFunctionReturn(0); 1005a30f8f8cSSatish Balay } 1006a30f8f8cSSatish Balay 10074a2ae208SSatish Balay #undef __FUNCT__ 10084a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1009f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1010a30f8f8cSSatish Balay { 1011a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1012dfbe8321SBarry Smith PetscErrorCode ierr; 1013a30f8f8cSSatish Balay 1014a30f8f8cSSatish Balay PetscFunctionBegin; 1015f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1016f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1017a30f8f8cSSatish Balay PetscFunctionReturn(0); 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay 10204a2ae208SSatish Balay #undef __FUNCT__ 10214a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10221302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1023a30f8f8cSSatish Balay { 1024d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1025d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1026d0d4cfc2SHong Zhang PetscErrorCode ierr; 1027899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1028899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1029899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1030d0d4cfc2SHong Zhang 1031a30f8f8cSSatish Balay PetscFunctionBegin; 1032d0d4cfc2SHong Zhang if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1033d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1034d0d4cfc2SHong Zhang 1035d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1036d0d4cfc2SHong Zhang /* 1037d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1038d0d4cfc2SHong Zhang */ 1039d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1040d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1041d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1042d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1043d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1044d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1047d0d4cfc2SHong Zhang mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1048d0d4cfc2SHong Zhang } 1049d0d4cfc2SHong Zhang 1050d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1051d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1052d0d4cfc2SHong Zhang 1053d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1054d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1055d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1056d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1057d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1058d0d4cfc2SHong Zhang nztot = nzA + nzB; 1059d0d4cfc2SHong Zhang 1060d0d4cfc2SHong Zhang cmap = mat->garray; 1061d0d4cfc2SHong Zhang if (v || idx) { 1062d0d4cfc2SHong Zhang if (nztot) { 1063d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1064d0d4cfc2SHong Zhang PetscInt imark = -1; 1065d0d4cfc2SHong Zhang if (v) { 1066d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1067d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1068d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1069d0d4cfc2SHong Zhang else break; 1070d0d4cfc2SHong Zhang } 1071d0d4cfc2SHong Zhang imark = i; 1072d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1073d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1074d0d4cfc2SHong Zhang } 1075d0d4cfc2SHong Zhang if (idx) { 1076d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1077d0d4cfc2SHong Zhang if (imark > -1) { 1078d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1079d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1080d0d4cfc2SHong Zhang } 1081d0d4cfc2SHong Zhang } else { 1082d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1083d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1084d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1085d0d4cfc2SHong Zhang else break; 1086d0d4cfc2SHong Zhang } 1087d0d4cfc2SHong Zhang imark = i; 1088d0d4cfc2SHong Zhang } 1089d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1090d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1091d0d4cfc2SHong Zhang } 1092d0d4cfc2SHong Zhang } else { 1093d0d4cfc2SHong Zhang if (idx) *idx = 0; 1094d0d4cfc2SHong Zhang if (v) *v = 0; 1095d0d4cfc2SHong Zhang } 1096d0d4cfc2SHong Zhang } 1097d0d4cfc2SHong Zhang *nz = nztot; 1098d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1099d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1100a30f8f8cSSatish Balay PetscFunctionReturn(0); 1101a30f8f8cSSatish Balay } 1102a30f8f8cSSatish Balay 11034a2ae208SSatish Balay #undef __FUNCT__ 11044a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 11051302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1106a30f8f8cSSatish Balay { 1107a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1108a30f8f8cSSatish Balay 1109a30f8f8cSSatish Balay PetscFunctionBegin; 1110abc0a331SBarry Smith if (!baij->getrowactive) { 1111abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1112a30f8f8cSSatish Balay } 1113a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1114a30f8f8cSSatish Balay PetscFunctionReturn(0); 1115a30f8f8cSSatish Balay } 1116a30f8f8cSSatish Balay 11174a2ae208SSatish Balay #undef __FUNCT__ 1118d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1119d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1120d0d4cfc2SHong Zhang { 1121d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1122d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1123d0d4cfc2SHong Zhang 1124d0d4cfc2SHong Zhang PetscFunctionBegin; 1125d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1126d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1127d0d4cfc2SHong Zhang } 1128d0d4cfc2SHong Zhang #undef __FUNCT__ 1129d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1130d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1131d0d4cfc2SHong Zhang { 1132d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1133d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1134d0d4cfc2SHong Zhang 1135d0d4cfc2SHong Zhang PetscFunctionBegin; 1136d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1137d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1138d0d4cfc2SHong Zhang } 1139d0d4cfc2SHong Zhang 1140d0d4cfc2SHong Zhang #undef __FUNCT__ 114199cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 114299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 114399cafbc1SBarry Smith { 114499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 114599cafbc1SBarry Smith PetscErrorCode ierr; 114699cafbc1SBarry Smith 114799cafbc1SBarry Smith PetscFunctionBegin; 114899cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 114999cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 115099cafbc1SBarry Smith PetscFunctionReturn(0); 115199cafbc1SBarry Smith } 115299cafbc1SBarry Smith 115399cafbc1SBarry Smith #undef __FUNCT__ 115499cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 115599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 115699cafbc1SBarry Smith { 115799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 115899cafbc1SBarry Smith PetscErrorCode ierr; 115999cafbc1SBarry Smith 116099cafbc1SBarry Smith PetscFunctionBegin; 116199cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 116299cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 116399cafbc1SBarry Smith PetscFunctionReturn(0); 116499cafbc1SBarry Smith } 116599cafbc1SBarry Smith 116699cafbc1SBarry Smith #undef __FUNCT__ 11674a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1168dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1169a30f8f8cSSatish Balay { 1170a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1171dfbe8321SBarry Smith PetscErrorCode ierr; 1172a30f8f8cSSatish Balay 1173a30f8f8cSSatish Balay PetscFunctionBegin; 1174a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1176a30f8f8cSSatish Balay PetscFunctionReturn(0); 1177a30f8f8cSSatish Balay } 1178a30f8f8cSSatish Balay 11794a2ae208SSatish Balay #undef __FUNCT__ 11804a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1181dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1182a30f8f8cSSatish Balay { 1183a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1184a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1185dfbe8321SBarry Smith PetscErrorCode ierr; 1186a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1187a30f8f8cSSatish Balay 1188a30f8f8cSSatish Balay PetscFunctionBegin; 1189899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 1190a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1191a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1192a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1193a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1194a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1195a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1196a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1197a30f8f8cSSatish Balay info->nz_used = isend[0]; 1198a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1199a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1200a30f8f8cSSatish Balay info->memory = isend[3]; 1201a30f8f8cSSatish Balay info->mallocs = isend[4]; 1202a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1203d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1204a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1205a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1206a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1207a30f8f8cSSatish Balay info->memory = irecv[3]; 1208a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1209a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1210d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1212a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1213a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1214a30f8f8cSSatish Balay info->memory = irecv[3]; 1215a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1216a30f8f8cSSatish Balay } else { 121777431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1218a30f8f8cSSatish Balay } 1219899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1220899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1221899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1222899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 1223a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1224a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1225a30f8f8cSSatish Balay info->factor_mallocs = 0; 1226a30f8f8cSSatish Balay PetscFunctionReturn(0); 1227a30f8f8cSSatish Balay } 1228a30f8f8cSSatish Balay 12294a2ae208SSatish Balay #undef __FUNCT__ 12304a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1231dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1232a30f8f8cSSatish Balay { 1233a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1234d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1235dfbe8321SBarry Smith PetscErrorCode ierr; 1236a30f8f8cSSatish Balay 1237a30f8f8cSSatish Balay PetscFunctionBegin; 1238e98b92d7SKris Buschelman switch (op) { 1239e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1240e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1241e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1242e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1243e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1244e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1245e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1246a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1247a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1248e98b92d7SKris Buschelman break; 1249e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1250a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1251a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1252a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1253e98b92d7SKris Buschelman break; 1254e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1255e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1256e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1257ae15b995SBarry Smith ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr); 1258e98b92d7SKris Buschelman break; 1259e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1260a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1261a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1262a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1263e98b92d7SKris Buschelman break; 1264e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1265a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1266e98b92d7SKris Buschelman break; 1267e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 126829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1269e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1270a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1271e98b92d7SKris Buschelman break; 12729a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 12739a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 12749a4540c5SBarry Smith case MAT_HERMITIAN: 12759a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 127677e54ba9SKris Buschelman case MAT_SYMMETRIC: 127777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12789a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 12799a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12809a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 128177e54ba9SKris Buschelman break; 1282d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 1283d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_TRUE; 1284d0d4cfc2SHong Zhang break; 1285d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 1286d0d4cfc2SHong Zhang aA->ignore_ltriangular = PETSC_FALSE; 1287d0d4cfc2SHong Zhang break; 1288d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 1289d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1290d0d4cfc2SHong Zhang break; 1291e98b92d7SKris Buschelman default: 129229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1293a30f8f8cSSatish Balay } 1294a30f8f8cSSatish Balay PetscFunctionReturn(0); 1295a30f8f8cSSatish Balay } 1296a30f8f8cSSatish Balay 12974a2ae208SSatish Balay #undef __FUNCT__ 12988115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1299dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1300a30f8f8cSSatish Balay { 1301dfbe8321SBarry Smith PetscErrorCode ierr; 1302a30f8f8cSSatish Balay PetscFunctionBegin; 1303999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13048115998fSBarry Smith PetscFunctionReturn(0); 1305a30f8f8cSSatish Balay } 1306a30f8f8cSSatish Balay 13074a2ae208SSatish Balay #undef __FUNCT__ 13084a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1309dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1310a30f8f8cSSatish Balay { 1311a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1312a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1313dfbe8321SBarry Smith PetscErrorCode ierr; 13145e90f9d9SHong Zhang PetscInt nv,m,n; 1315b3bf805bSHong Zhang PetscTruth flg; 1316a30f8f8cSSatish Balay 1317a30f8f8cSSatish Balay PetscFunctionBegin; 1318a30f8f8cSSatish Balay if (ll != rr){ 1319b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1320b3bf805bSHong Zhang if (!flg) 132129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1322a30f8f8cSSatish Balay } 1323b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1324b3bf805bSHong Zhang 13255e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 13265e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1327b3bf805bSHong Zhang 13285e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 13295e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 13305e90f9d9SHong Zhang 1331a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 13325e90f9d9SHong Zhang 13335e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1334a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13355e90f9d9SHong Zhang 13365e90f9d9SHong Zhang /* scale the diagonal part */ 1337a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay 13395e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1340a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1342a30f8f8cSSatish Balay PetscFunctionReturn(0); 1343a30f8f8cSSatish Balay } 1344a30f8f8cSSatish Balay 13454a2ae208SSatish Balay #undef __FUNCT__ 13464a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1347dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1348a30f8f8cSSatish Balay { 1349a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1350a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 13511302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1352dfbe8321SBarry Smith PetscErrorCode ierr; 1353a30f8f8cSSatish Balay 1354a30f8f8cSSatish Balay PetscFunctionBegin; 1355a30f8f8cSSatish Balay if (!a->rank) { 1356a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1357a30f8f8cSSatish Balay } 13581302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1359a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1360a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1361a30f8f8cSSatish Balay PetscFunctionReturn(0); 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay 13644a2ae208SSatish Balay #undef __FUNCT__ 13654a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1366dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1367a30f8f8cSSatish Balay { 1368f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370a30f8f8cSSatish Balay 1371a30f8f8cSSatish Balay PetscFunctionBegin; 1372a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1373a30f8f8cSSatish Balay PetscFunctionReturn(0); 1374a30f8f8cSSatish Balay } 1375a30f8f8cSSatish Balay 13766849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1377a30f8f8cSSatish Balay 13784a2ae208SSatish Balay #undef __FUNCT__ 13794a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1380dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1381a30f8f8cSSatish Balay { 1382a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1383a30f8f8cSSatish Balay Mat a,b,c,d; 1384a30f8f8cSSatish Balay PetscTruth flg; 1385dfbe8321SBarry Smith PetscErrorCode ierr; 1386a30f8f8cSSatish Balay 1387a30f8f8cSSatish Balay PetscFunctionBegin; 1388a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1389a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1390a30f8f8cSSatish Balay 1391a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1392abc0a331SBarry Smith if (flg) { 1393a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay } 1395a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay PetscFunctionReturn(0); 1397a30f8f8cSSatish Balay } 1398a30f8f8cSSatish Balay 13994a2ae208SSatish Balay #undef __FUNCT__ 14003c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 14013c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 14023c896bc6SHong Zhang { 14033c896bc6SHong Zhang PetscErrorCode ierr; 14043c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 14053c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 14063c896bc6SHong Zhang 14073c896bc6SHong Zhang PetscFunctionBegin; 14083c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 14093c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1410d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 14113c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1412d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 14133c896bc6SHong Zhang } else { 14143c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 14153c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 14163c896bc6SHong Zhang } 14173c896bc6SHong Zhang PetscFunctionReturn(0); 14183c896bc6SHong Zhang } 14193c896bc6SHong Zhang 14203c896bc6SHong Zhang #undef __FUNCT__ 14214a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1422dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1423273d9f13SBarry Smith { 1424dfbe8321SBarry Smith PetscErrorCode ierr; 1425273d9f13SBarry Smith 1426273d9f13SBarry Smith PetscFunctionBegin; 1427273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1428273d9f13SBarry Smith PetscFunctionReturn(0); 1429273d9f13SBarry Smith } 1430a5e6ed63SBarry Smith 14314fe895cdSHong Zhang #include "petscblaslapack.h" 14324fe895cdSHong Zhang #undef __FUNCT__ 14334fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 14344fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 14354fe895cdSHong Zhang { 14364fe895cdSHong Zhang PetscErrorCode ierr; 14374fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 14384fe895cdSHong Zhang PetscBLASInt bnz,one=1; 14394fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 14404fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 14414fe895cdSHong Zhang 14424fe895cdSHong Zhang PetscFunctionBegin; 14434fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 14444fe895cdSHong Zhang PetscScalar alpha = a; 14454fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 14464fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 14474fe895cdSHong Zhang bnz = (PetscBLASInt)xa->nz; 14484fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 14494fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 14504fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 14514fe895cdSHong Zhang bnz = (PetscBLASInt)xb->nz; 14524fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 14534fe895cdSHong Zhang } else { 1454d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14554fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1456d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14574fe895cdSHong Zhang } 14584fe895cdSHong Zhang PetscFunctionReturn(0); 14594fe895cdSHong Zhang } 14604fe895cdSHong Zhang 1461a5e6ed63SBarry Smith #undef __FUNCT__ 1462a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14631302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1464a5e6ed63SBarry Smith { 14656849ba73SBarry Smith PetscErrorCode ierr; 14661302d50aSBarry Smith PetscInt i; 1467a5e6ed63SBarry Smith PetscTruth flg; 1468a5e6ed63SBarry Smith 14696849ba73SBarry Smith PetscFunctionBegin; 1470a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1471a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1472a5e6ed63SBarry Smith if (!flg) { 14731302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1474a5e6ed63SBarry Smith } 1475a5e6ed63SBarry Smith } 1476a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1477a5e6ed63SBarry Smith PetscFunctionReturn(0); 1478a5e6ed63SBarry Smith } 1479a5e6ed63SBarry Smith 1480a5e6ed63SBarry Smith 1481a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1482a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1483a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1484a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1485a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1486a9d4b620SHong Zhang MatMult_MPISBAIJ, 148797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1488431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1489431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 149397304618SKris Buschelman /*10*/ 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 14962798e883SHong Zhang MatRelax_MPISBAIJ, 1497a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 149897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1499a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1500a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1501a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1502a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 150397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1504a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1507a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1508dcf5cc72SBarry Smith /*25*/ 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 151397304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1514b5df2d14SHong Zhang 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 151897304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1519a30f8f8cSSatish Balay 0, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 15234fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ, 1524a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1525d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1526a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 15273c896bc6SHong Zhang MatCopy_MPISBAIJ, 152897304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1529a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 1533521d7252SBarry Smith /*50*/ 0, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 153897304618SKris Buschelman /*55*/ 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 154397304618SKris Buschelman /*60*/ 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 1546357abbc8SBarry Smith 0, 154724d5174aSHong Zhang 0, 154897304618SKris Buschelman /*65*/ 0, 154924d5174aSHong Zhang 0, 155024d5174aSHong Zhang 0, 155124d5174aSHong Zhang 0, 155224d5174aSHong Zhang 0, 155397304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 155424d5174aSHong Zhang 0, 155597304618SKris Buschelman 0, 155697304618SKris Buschelman 0, 155797304618SKris Buschelman 0, 155897304618SKris Buschelman /*75*/ 0, 155997304618SKris Buschelman 0, 156097304618SKris Buschelman 0, 156197304618SKris Buschelman 0, 156297304618SKris Buschelman 0, 156397304618SKris Buschelman /*80*/ 0, 156497304618SKris Buschelman 0, 156597304618SKris Buschelman 0, 156697304618SKris Buschelman 0, 1567865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1568865e5f61SKris Buschelman /*85*/ 0, 1569865e5f61SKris Buschelman 0, 1570865e5f61SKris Buschelman 0, 1571865e5f61SKris Buschelman 0, 1572865e5f61SKris Buschelman 0, 1573865e5f61SKris Buschelman /*90*/ 0, 1574865e5f61SKris Buschelman 0, 1575865e5f61SKris Buschelman 0, 1576865e5f61SKris Buschelman 0, 1577865e5f61SKris Buschelman 0, 1578865e5f61SKris Buschelman /*95*/ 0, 1579865e5f61SKris Buschelman 0, 1580865e5f61SKris Buschelman 0, 158199cafbc1SBarry Smith 0, 158299cafbc1SBarry Smith 0, 158399cafbc1SBarry Smith /*100*/0, 158499cafbc1SBarry Smith 0, 158599cafbc1SBarry Smith 0, 158699cafbc1SBarry Smith 0, 158799cafbc1SBarry Smith 0, 158899cafbc1SBarry Smith /*105*/0, 158999cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1590d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1591d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1592d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 159399cafbc1SBarry Smith }; 1594a30f8f8cSSatish Balay 1595a30f8f8cSSatish Balay 1596a30f8f8cSSatish Balay EXTERN_C_BEGIN 15974a2ae208SSatish Balay #undef __FUNCT__ 15984a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1599be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1600a30f8f8cSSatish Balay { 1601a30f8f8cSSatish Balay PetscFunctionBegin; 1602a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1603a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1604a30f8f8cSSatish Balay PetscFunctionReturn(0); 1605a30f8f8cSSatish Balay } 1606a30f8f8cSSatish Balay EXTERN_C_END 1607a30f8f8cSSatish Balay 1608273d9f13SBarry Smith EXTERN_C_BEGIN 16094a2ae208SSatish Balay #undef __FUNCT__ 1610a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1611be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1612a23d5eceSKris Buschelman { 1613a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1614dfbe8321SBarry Smith PetscErrorCode ierr; 16151302d50aSBarry Smith PetscInt i,mbs,Mbs; 1616a23d5eceSKris Buschelman 1617a23d5eceSKris Buschelman PetscFunctionBegin; 1618a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1619a23d5eceSKris Buschelman 1620a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1621a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1622a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 162377431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 162477431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1625899cda47SBarry Smith 1626899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 1627899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr); 1628899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr); 1629899cda47SBarry Smith 1630a23d5eceSKris Buschelman if (d_nnz) { 1631899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 163277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1633a23d5eceSKris Buschelman } 1634a23d5eceSKris Buschelman } 1635a23d5eceSKris Buschelman if (o_nnz) { 1636899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 163777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1638a23d5eceSKris Buschelman } 1639a23d5eceSKris Buschelman } 1640a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1641a23d5eceSKris Buschelman 1642a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1643899cda47SBarry Smith mbs = B->rmap.n/bs; 1644899cda47SBarry Smith Mbs = B->rmap.N/bs; 1645899cda47SBarry Smith if (mbs*bs != B->rmap.n) { 1646899cda47SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs); 1647a23d5eceSKris Buschelman } 1648a23d5eceSKris Buschelman 1649899cda47SBarry Smith B->rmap.bs = bs; 1650a23d5eceSKris Buschelman b->bs2 = bs*bs; 1651a23d5eceSKris Buschelman b->mbs = mbs; 1652a23d5eceSKris Buschelman b->nbs = mbs; 1653a23d5eceSKris Buschelman b->Mbs = Mbs; 1654a23d5eceSKris Buschelman b->Nbs = Mbs; 1655a23d5eceSKris Buschelman 1656a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1657899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 1658a23d5eceSKris Buschelman } 1659899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 1660899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 1661a23d5eceSKris Buschelman 1662899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 1663899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 1664a23d5eceSKris Buschelman 1665f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1666899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 16679c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1668c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 166952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 16709c097c71SKris Buschelman 1671f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1672899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 16734aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1674589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 167552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1676a23d5eceSKris Buschelman 1677a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1678a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1679a23d5eceSKris Buschelman 1680a23d5eceSKris Buschelman PetscFunctionReturn(0); 1681a23d5eceSKris Buschelman } 1682a23d5eceSKris Buschelman EXTERN_C_END 1683a23d5eceSKris Buschelman 16840bad9183SKris Buschelman /*MC 1685fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16860bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16870bad9183SKris Buschelman 16880bad9183SKris Buschelman Options Database Keys: 16890bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16900bad9183SKris Buschelman 16910bad9183SKris Buschelman Level: beginner 16920bad9183SKris Buschelman 16930bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16940bad9183SKris Buschelman M*/ 16950bad9183SKris Buschelman 1696a23d5eceSKris Buschelman EXTERN_C_BEGIN 1697a23d5eceSKris Buschelman #undef __FUNCT__ 16984a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1699be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1700b5df2d14SHong Zhang { 1701b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1702dfbe8321SBarry Smith PetscErrorCode ierr; 1703b5df2d14SHong Zhang PetscTruth flg; 1704b5df2d14SHong Zhang 1705b5df2d14SHong Zhang PetscFunctionBegin; 1706b5df2d14SHong Zhang 1707b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1708b0a32e0cSBarry Smith B->data = (void*)b; 1709b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1710b5df2d14SHong Zhang 1711b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1712b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1713b5df2d14SHong Zhang B->mapping = 0; 1714b5df2d14SHong Zhang B->factor = 0; 1715b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1716b5df2d14SHong Zhang 1717b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1718b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1719b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1720b5df2d14SHong Zhang 1721b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1722899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1723b5df2d14SHong Zhang 1724b5df2d14SHong Zhang /* build cache for off array entries formed */ 1725b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1726b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1727b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1728b5df2d14SHong Zhang b->garray = PETSC_NULL; 1729b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1730b5df2d14SHong Zhang 1731f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1732b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 173364a35ccbSBarry Smith b->setvalueslen = 0; 1734b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1735b5df2d14SHong Zhang #endif 1736b5df2d14SHong Zhang 1737b5df2d14SHong Zhang /* stuff used in block assembly */ 1738b5df2d14SHong Zhang b->barray = 0; 1739b5df2d14SHong Zhang 1740b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1741b5df2d14SHong Zhang b->lvec = 0; 1742b5df2d14SHong Zhang b->Mvctx = 0; 174340781036SHong Zhang b->slvec0 = 0; 174440781036SHong Zhang b->slvec0b = 0; 174540781036SHong Zhang b->slvec1 = 0; 174640781036SHong Zhang b->slvec1a = 0; 174740781036SHong Zhang b->slvec1b = 0; 174840781036SHong Zhang b->sMvctx = 0; 1749b5df2d14SHong Zhang 1750b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1751b5df2d14SHong Zhang b->rowindices = 0; 1752b5df2d14SHong Zhang b->rowvalues = 0; 1753b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1754b5df2d14SHong Zhang 1755b5df2d14SHong Zhang /* hash table stuff */ 1756b5df2d14SHong Zhang b->ht = 0; 1757b5df2d14SHong Zhang b->hd = 0; 1758b5df2d14SHong Zhang b->ht_size = 0; 1759b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1760b5df2d14SHong Zhang b->ht_fact = 0; 1761b5df2d14SHong Zhang b->ht_total_ct = 0; 1762b5df2d14SHong Zhang b->ht_insert_ct = 0; 1763b5df2d14SHong Zhang 1764e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1765b5df2d14SHong Zhang if (flg) { 1766f6275e2eSBarry Smith PetscReal fact = 1.39; 1767b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1768e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1769b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1770b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1771ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1772b5df2d14SHong Zhang } 1773b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1774b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1775b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1776b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1777b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1778b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1779b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1780b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1781b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1782a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1783a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1784a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178523ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178623ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178723ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178823ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1789b5df2d14SHong Zhang PetscFunctionReturn(0); 1790b5df2d14SHong Zhang } 1791273d9f13SBarry Smith EXTERN_C_END 1792b5df2d14SHong Zhang 1793209238afSKris Buschelman /*MC 1794002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1795209238afSKris Buschelman 1796209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1797209238afSKris Buschelman and MATMPISBAIJ otherwise. 1798209238afSKris Buschelman 1799209238afSKris Buschelman Options Database Keys: 1800209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1801209238afSKris Buschelman 1802209238afSKris Buschelman Level: beginner 1803209238afSKris Buschelman 1804209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1805209238afSKris Buschelman M*/ 1806209238afSKris Buschelman 1807209238afSKris Buschelman EXTERN_C_BEGIN 1808209238afSKris Buschelman #undef __FUNCT__ 1809209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1810be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1811dfbe8321SBarry Smith { 18126849ba73SBarry Smith PetscErrorCode ierr; 18131302d50aSBarry Smith PetscMPIInt size; 1814209238afSKris Buschelman 1815209238afSKris Buschelman PetscFunctionBegin; 1816209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1817209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1818209238afSKris Buschelman if (size == 1) { 1819209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1820209238afSKris Buschelman } else { 1821209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1822209238afSKris Buschelman } 1823209238afSKris Buschelman PetscFunctionReturn(0); 1824209238afSKris Buschelman } 1825209238afSKris Buschelman EXTERN_C_END 1826209238afSKris Buschelman 18274a2ae208SSatish Balay #undef __FUNCT__ 18284a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1829b5df2d14SHong Zhang /*@C 1830b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1831b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1832b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1833b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1834b5df2d14SHong Zhang 1835b5df2d14SHong Zhang Collective on Mat 1836b5df2d14SHong Zhang 1837b5df2d14SHong Zhang Input Parameters: 1838b5df2d14SHong Zhang + A - the matrix 1839b5df2d14SHong Zhang . bs - size of blockk 1840b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1841b5df2d14SHong Zhang submatrix (same for all local rows) 1842b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18436d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18446d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18456d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1846b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1847b5df2d14SHong Zhang submatrix (same for all local rows). 1848b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1849b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1850b5df2d14SHong Zhang each block row) or PETSC_NULL. 1851b5df2d14SHong Zhang 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang Options Database Keys: 1854b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1855b5df2d14SHong Zhang block calculations (much slower) 1856b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1857b5df2d14SHong Zhang 1858b5df2d14SHong Zhang Notes: 1859b5df2d14SHong Zhang 1860b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1861b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1862b5df2d14SHong Zhang 186349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 186449a6f317SBarry Smith 1865b5df2d14SHong Zhang Storage Information: 1866b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1867b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1868b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1869b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1872b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1873b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1874b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1875b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1876b5df2d14SHong Zhang 1877b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1878b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1879b5df2d14SHong Zhang 1880b5df2d14SHong Zhang .vb 1881b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1882b5df2d14SHong Zhang ------------------- 1883b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1884b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1885b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1886b5df2d14SHong Zhang ------------------- 1887b5df2d14SHong Zhang .ve 1888b5df2d14SHong Zhang 1889b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1890b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18916d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18926d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1893b5df2d14SHong Zhang 18946d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18956d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1896b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1897b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1898b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1899b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1900b5df2d14SHong Zhang matrices. 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang Level: intermediate 1903b5df2d14SHong Zhang 1904b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1905b5df2d14SHong Zhang 1906b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1907b5df2d14SHong Zhang @*/ 1908be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1909b5df2d14SHong Zhang { 19101302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1911b5df2d14SHong Zhang 1912b5df2d14SHong Zhang PetscFunctionBegin; 1913a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1914a23d5eceSKris Buschelman if (f) { 1915a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1916b5df2d14SHong Zhang } 1917b5df2d14SHong Zhang PetscFunctionReturn(0); 1918b5df2d14SHong Zhang } 1919b5df2d14SHong Zhang 19204a2ae208SSatish Balay #undef __FUNCT__ 19214a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1922a30f8f8cSSatish Balay /*@C 1923a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1924a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1925a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1926a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1927a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay Collective on MPI_Comm 1930a30f8f8cSSatish Balay 1931a30f8f8cSSatish Balay Input Parameters: 1932a30f8f8cSSatish Balay + comm - MPI communicator 1933a30f8f8cSSatish Balay . bs - size of blockk 1934a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1935a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1936a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1937a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1938a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1939a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1940a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1941a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1942a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1943a30f8f8cSSatish Balay submatrix (same for all local rows) 1944a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19456d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19466d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19476d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1948a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1949a30f8f8cSSatish Balay submatrix (same for all local rows). 1950a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1951a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1952a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1953a30f8f8cSSatish Balay 1954a30f8f8cSSatish Balay Output Parameter: 1955a30f8f8cSSatish Balay . A - the matrix 1956a30f8f8cSSatish Balay 1957a30f8f8cSSatish Balay Options Database Keys: 1958a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1959a30f8f8cSSatish Balay block calculations (much slower) 1960a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1961a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1962a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1963a30f8f8cSSatish Balay 1964a30f8f8cSSatish Balay Notes: 1965d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1966d1be2dadSMatthew Knepley 1967a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1968a30f8f8cSSatish Balay (possibly both). 1969a30f8f8cSSatish Balay 1970a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1971a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1972a30f8f8cSSatish Balay 197349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197449a6f317SBarry Smith 1975a30f8f8cSSatish Balay Storage Information: 1976a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1977a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1978a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1979a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1980a30f8f8cSSatish Balay 1981a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1982a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1983a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1984a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1985a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1988a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1989a30f8f8cSSatish Balay 1990a30f8f8cSSatish Balay .vb 1991a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1992a30f8f8cSSatish Balay ------------------- 1993a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1994a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1995a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1996a30f8f8cSSatish Balay ------------------- 1997a30f8f8cSSatish Balay .ve 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2000a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20016d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20026d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2003a30f8f8cSSatish Balay 20046d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20056d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2006a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2007a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2008a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2009a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2010a30f8f8cSSatish Balay matrices. 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay Level: intermediate 2013a30f8f8cSSatish Balay 2014a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2015a30f8f8cSSatish Balay 2016a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2017a30f8f8cSSatish Balay @*/ 2018a30f8f8cSSatish Balay 2019be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2020a30f8f8cSSatish Balay { 20216849ba73SBarry Smith PetscErrorCode ierr; 20221302d50aSBarry Smith PetscMPIInt size; 2023a30f8f8cSSatish Balay 2024a30f8f8cSSatish Balay PetscFunctionBegin; 2025f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2026f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2027273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2028273d9f13SBarry Smith if (size > 1) { 2029b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2030b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2031273d9f13SBarry Smith } else { 2032273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2033273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2034273d9f13SBarry Smith } 2035a30f8f8cSSatish Balay PetscFunctionReturn(0); 2036a30f8f8cSSatish Balay } 2037a30f8f8cSSatish Balay 2038a30f8f8cSSatish Balay 20394a2ae208SSatish Balay #undef __FUNCT__ 20404a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20416849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2042a30f8f8cSSatish Balay { 2043a30f8f8cSSatish Balay Mat mat; 2044a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2045dfbe8321SBarry Smith PetscErrorCode ierr; 2046899cda47SBarry Smith PetscInt len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs; 2047387bc808SHong Zhang PetscScalar *array; 2048a30f8f8cSSatish Balay 2049a30f8f8cSSatish Balay PetscFunctionBegin; 2050a30f8f8cSSatish Balay *newmat = 0; 2051f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2052899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2053be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20541d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2055899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2056899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2057e1b6402fSHong Zhang 205882327fa8SHong Zhang mat->factor = matin->factor; 2059273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20617fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20627fff6886SHong Zhang 2063b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2064a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2065a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2066a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2067a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2068a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2069a30f8f8cSSatish Balay 2070899cda47SBarry Smith 2071a30f8f8cSSatish Balay a->size = oldmat->size; 2072a30f8f8cSSatish Balay a->rank = oldmat->rank; 2073a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2074a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2075a30f8f8cSSatish Balay a->rowindices = 0; 2076a30f8f8cSSatish Balay a->rowvalues = 0; 2077a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2078a30f8f8cSSatish Balay a->barray = 0; 2079899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2080899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2081899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2082899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2083a30f8f8cSSatish Balay 2084a30f8f8cSSatish Balay /* hash table stuff */ 2085a30f8f8cSSatish Balay a->ht = 0; 2086a30f8f8cSSatish Balay a->hd = 0; 2087a30f8f8cSSatish Balay a->ht_size = 0; 2088a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2089a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2090a30f8f8cSSatish Balay a->ht_total_ct = 0; 2091a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2092a30f8f8cSSatish Balay 2093899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2094a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2095899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 2096a30f8f8cSSatish Balay if (oldmat->colmap) { 2097a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2098a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay #else 21001302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210152e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21021302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2103a30f8f8cSSatish Balay #endif 2104a30f8f8cSSatish Balay } else a->colmap = 0; 2105387bc808SHong Zhang 2106a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21071302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 210852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21091302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2110a30f8f8cSSatish Balay } else a->garray = 0; 2111a30f8f8cSSatish Balay 2112a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 211352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2114a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 211552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 211682327fa8SHong Zhang 211782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 211982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2121387bc808SHong Zhang 2122387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21231ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2124387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2125387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21261ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21271ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2128387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21291ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 213352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2135387bc808SHong Zhang 2136387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2137387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2138387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214082327fa8SHong Zhang 2141a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2143a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2145b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay *newmat = mat; 2147a30f8f8cSSatish Balay PetscFunctionReturn(0); 2148a30f8f8cSSatish Balay } 2149a30f8f8cSSatish Balay 2150a30f8f8cSSatish Balay #include "petscsys.h" 2151a30f8f8cSSatish Balay 21524a2ae208SSatish Balay #undef __FUNCT__ 21534a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2154f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2155a30f8f8cSSatish Balay { 2156a30f8f8cSSatish Balay Mat A; 21576849ba73SBarry Smith PetscErrorCode ierr; 215813f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 215987828ca2SBarry Smith PetscScalar *vals,*buf; 2160a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2161a30f8f8cSSatish Balay MPI_Status status; 21622fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 216313f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21642fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21651302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21661302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21671302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 216813f74950SBarry Smith int fd; 2169a30f8f8cSSatish Balay 2170a30f8f8cSSatish Balay PetscFunctionBegin; 2171b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay 2173a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2174a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay if (!rank) { 2176b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2178552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2179a30f8f8cSSatish Balay if (header[3] < 0) { 218029bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2181a30f8f8cSSatish Balay } 2182a30f8f8cSSatish Balay } 2183a30f8f8cSSatish Balay 2184a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2186a30f8f8cSSatish Balay 218729bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2188a30f8f8cSSatish Balay 2189a30f8f8cSSatish Balay /* 2190a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2191a30f8f8cSSatish Balay divisible by the blocksize 2192a30f8f8cSSatish Balay */ 2193a30f8f8cSSatish Balay Mbs = M/bs; 2194a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2195a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2196a30f8f8cSSatish Balay else Mbs++; 2197a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2198ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2199a30f8f8cSSatish Balay } 2200a30f8f8cSSatish Balay 2201a30f8f8cSSatish Balay /* determine ownership of all rows */ 2202a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2203a30f8f8cSSatish Balay m = mbs*bs; 2204a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay browners = rowners + size + 1; 2206a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay rowners[0] = 0; 2208a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2209a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2210a30f8f8cSSatish Balay rstart = rowners[rank]; 2211a30f8f8cSSatish Balay rend = rowners[rank+1]; 2212a30f8f8cSSatish Balay 2213a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22142fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay if (!rank) { 22161302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2217a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2219a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2221a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay } else { 2224a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 22270222edb1SHong Zhang if (!rank) { /* procs[0] */ 2228a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22291302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22301302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2231a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2232a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2233a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2234a30f8f8cSSatish Balay } 2235a30f8f8cSSatish Balay } 2236a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2237a30f8f8cSSatish Balay 2238a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2239a30f8f8cSSatish Balay maxnz = 0; 2240a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2241a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2242a30f8f8cSSatish Balay } 22431302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay 2245a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2246a30f8f8cSSatish Balay nz = procsnz[0]; 22471302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay mycols = ibuf; 2249a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2250a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2254a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2255a30f8f8cSSatish Balay nz = procsnz[i]; 2256a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2257a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay } 2259a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2260a30f8f8cSSatish Balay if (size != 1) { 2261a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2262a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2264a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay } 2266a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22670222edb1SHong Zhang } else { /* procs[i], i>0 */ 2268a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2269a30f8f8cSSatish Balay nz = 0; 2270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2271a30f8f8cSSatish Balay nz += locrowlens[i]; 2272a30f8f8cSSatish Balay } 22731302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay mycols = ibuf; 2275a30f8f8cSSatish Balay /* receive message of column indices*/ 2276a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2277a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 227829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2279a30f8f8cSSatish Balay } 2280a30f8f8cSSatish Balay 2281a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 22821302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2283a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 22841302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 22851302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2286a30f8f8cSSatish Balay masked1 = mask + Mbs; 2287a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2288a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2289a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2290a30f8f8cSSatish Balay dcount = 0; 2291a30f8f8cSSatish Balay odcount = 0; 2292a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2293a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2294a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22950222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2296a30f8f8cSSatish Balay if (!mask[tmp]) { 2297a30f8f8cSSatish Balay mask[tmp] = 1; 22980222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22990222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2300a30f8f8cSSatish Balay } 2301a30f8f8cSSatish Balay } 2302a30f8f8cSSatish Balay rowcount++; 2303a30f8f8cSSatish Balay } 2304a30f8f8cSSatish Balay 23050222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23060222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2309a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2310a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2311a30f8f8cSSatish Balay } 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay /* create our matrix */ 2314f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2315f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 231622191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 231722191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2318273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay if (!rank) { 232187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2322a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2323a30f8f8cSSatish Balay nz = procsnz[0]; 2324a30f8f8cSSatish Balay vals = buf; 2325a30f8f8cSSatish Balay mycols = ibuf; 2326a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2327a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2328a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2329a30f8f8cSSatish Balay 2330a30f8f8cSSatish Balay /* insert into matrix */ 2331a30f8f8cSSatish Balay jj = rstart*bs; 2332a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23337e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2334a30f8f8cSSatish Balay mycols += locrowlens[i]; 2335a30f8f8cSSatish Balay vals += locrowlens[i]; 2336a30f8f8cSSatish Balay jj++; 2337a30f8f8cSSatish Balay } 23387e06b45fSHong Zhang 2339a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2340a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2341a30f8f8cSSatish Balay nz = procsnz[i]; 2342a30f8f8cSSatish Balay vals = buf; 2343a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2344a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2345a30f8f8cSSatish Balay } 2346a30f8f8cSSatish Balay /* the last proc */ 2347a30f8f8cSSatish Balay if (size != 1){ 2348a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2352a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2353a30f8f8cSSatish Balay } 2354a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23557e06b45fSHong Zhang 2356a30f8f8cSSatish Balay } else { 2357a30f8f8cSSatish Balay /* receive numeric values */ 235887828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay 2360a30f8f8cSSatish Balay /* receive message of values*/ 2361a30f8f8cSSatish Balay vals = buf; 2362a30f8f8cSSatish Balay mycols = ibuf; 2363a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 236529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay /* insert into matrix */ 2368a30f8f8cSSatish Balay jj = rstart*bs; 2369a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2370a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay mycols += locrowlens[i]; 2372a30f8f8cSSatish Balay vals += locrowlens[i]; 2373a30f8f8cSSatish Balay jj++; 2374a30f8f8cSSatish Balay } 2375a30f8f8cSSatish Balay } 23767e06b45fSHong Zhang 2377a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2379a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2380a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2381a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2382a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238522191285SKris Buschelman *newmat = A; 2386a30f8f8cSSatish Balay PetscFunctionReturn(0); 2387a30f8f8cSSatish Balay } 2388a30f8f8cSSatish Balay 23894a2ae208SSatish Balay #undef __FUNCT__ 23904a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2391dcf5cc72SBarry Smith /*XXXXX@ 2392a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2393a30f8f8cSSatish Balay 2394a30f8f8cSSatish Balay Input Parameters: 2395a30f8f8cSSatish Balay . mat - the matrix 2396a30f8f8cSSatish Balay . fact - factor 2397a30f8f8cSSatish Balay 2398a30f8f8cSSatish Balay Collective on Mat 2399a30f8f8cSSatish Balay 2400a30f8f8cSSatish Balay Level: advanced 2401a30f8f8cSSatish Balay 2402a30f8f8cSSatish Balay Notes: 2403a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay .seealso: MatSetOption() 2408dcf5cc72SBarry Smith @XXXXX*/ 2409dcf5cc72SBarry Smith 241024d5174aSHong Zhang 24114a2ae208SSatish Balay #undef __FUNCT__ 24124a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2413dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 241424d5174aSHong Zhang { 241524d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2416f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2417ca54ac64SHong Zhang PetscReal atmp; 241887828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2419dfbe8321SBarry Smith PetscErrorCode ierr; 24201302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24211302d50aSBarry Smith PetscMPIInt rank,size; 24221302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 242387828ca2SBarry Smith PetscScalar *va; 24248a1c53f2SBarry Smith MatScalar *ba; 2425f4c0e9e4SHong Zhang MPI_Status stat; 242624d5174aSHong Zhang 242724d5174aSHong Zhang PetscFunctionBegin; 2428d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 24291ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2430f4c0e9e4SHong Zhang 243156faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 243256faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2433f4c0e9e4SHong Zhang 2434899cda47SBarry Smith bs = A->rmap.bs; 2435f4c0e9e4SHong Zhang mbs = a->mbs; 2436f4c0e9e4SHong Zhang Mbs = a->Mbs; 2437f4c0e9e4SHong Zhang ba = b->a; 2438f4c0e9e4SHong Zhang bi = b->i; 2439f4c0e9e4SHong Zhang bj = b->j; 2440f4c0e9e4SHong Zhang 2441f4c0e9e4SHong Zhang /* find ownerships */ 2442899cda47SBarry Smith rowners_bs = A->rmap.range; 2443f4c0e9e4SHong Zhang 2444f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 244582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2446ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2447f4c0e9e4SHong Zhang 2448f4c0e9e4SHong Zhang /* row_max for B */ 2449b8475685SHong Zhang if (rank != size-1){ 2450f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2451f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2452f4c0e9e4SHong Zhang brow = bs*i; 2453f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2454f4c0e9e4SHong Zhang bcol = bs*(*bj); 2455f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2456ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 245704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2458f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2459f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2460ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2461ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2462f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2463f4c0e9e4SHong Zhang } 2464f4c0e9e4SHong Zhang } 2465f4c0e9e4SHong Zhang bj++; 2466f4c0e9e4SHong Zhang } 2467f4c0e9e4SHong Zhang } 2468f4c0e9e4SHong Zhang 2469f4c0e9e4SHong Zhang /* send values to its owners */ 2470f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2471f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2472ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 247356faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2474ca54ac64SHong Zhang } 2475f4c0e9e4SHong Zhang } 2476f4c0e9e4SHong Zhang 2477f4c0e9e4SHong Zhang /* receive values */ 2478ca54ac64SHong Zhang if (rank){ 2479f4c0e9e4SHong Zhang rvalues = work; 2480ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2481f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248256faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2483f4c0e9e4SHong Zhang /* process values */ 2484f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2485ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2486f4c0e9e4SHong Zhang } 2487f4c0e9e4SHong Zhang } 2488ca54ac64SHong Zhang } 2489f4c0e9e4SHong Zhang 24901ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2491ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 249224d5174aSHong Zhang PetscFunctionReturn(0); 249324d5174aSHong Zhang } 24942798e883SHong Zhang 24952798e883SHong Zhang #undef __FUNCT__ 24962798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 24971302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 24982798e883SHong Zhang { 24992798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2500dfbe8321SBarry Smith PetscErrorCode ierr; 2501899cda47SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap.bs; 2502efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2503ffe4fb16SHong Zhang Vec bb1; 2504ffe4fb16SHong Zhang 2505ffe4fb16SHong Zhang PetscFunctionBegin; 250677431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2507ffe4fb16SHong Zhang if (bs > 1) 2508ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2509ffe4fb16SHong Zhang 2510ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2511ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2512ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2513ffe4fb16SHong Zhang its--; 2514ffe4fb16SHong Zhang } 2515ffe4fb16SHong Zhang 2516ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2517ffe4fb16SHong Zhang while (its--){ 2518ffe4fb16SHong Zhang 2519ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2520ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2521ffe4fb16SHong Zhang 2522ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25231ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25241ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2525ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25261ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2527ffe4fb16SHong Zhang 2528efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2529ffe4fb16SHong Zhang 2530ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25311ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25321ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2533ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25341ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2535ffe4fb16SHong Zhang 2536ffe4fb16SHong Zhang /* set slvec1b = 0 */ 25372dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2538ffe4fb16SHong Zhang 2539ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 25401ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25411ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2543ffe4fb16SHong Zhang 2544ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2545ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2546ffe4fb16SHong Zhang 2547ffe4fb16SHong Zhang /* local diagonal sweep */ 2548ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2549ffe4fb16SHong Zhang } 2550ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2551ffe4fb16SHong Zhang } else { 2552ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2553ffe4fb16SHong Zhang } 2554ffe4fb16SHong Zhang PetscFunctionReturn(0); 2555ffe4fb16SHong Zhang } 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang #undef __FUNCT__ 2558ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 25591302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2560ffe4fb16SHong Zhang { 2561ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2562dfbe8321SBarry Smith PetscErrorCode ierr; 25632798e883SHong Zhang Vec lvec1,bb1; 25642798e883SHong Zhang 25652798e883SHong Zhang PetscFunctionBegin; 256677431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2567899cda47SBarry Smith if (matin->rmap.bs > 1) 25682798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25692798e883SHong Zhang 2570c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25712798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2572bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25732798e883SHong Zhang its--; 25742798e883SHong Zhang } 25752798e883SHong Zhang 25762798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25772798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25782798e883SHong Zhang while (its--){ 25792798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25802798e883SHong Zhang 25812798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25822798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2583efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 25842798e883SHong Zhang 25852798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25862798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25872798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25882798e883SHong Zhang 25892798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2590efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 25912798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25922798e883SHong Zhang 25932798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25942798e883SHong Zhang 2595c14dc6b6SHong Zhang /* diagonal sweep */ 2596bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25972798e883SHong Zhang } 25982798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25992798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2600c14dc6b6SHong Zhang } else { 2601c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2602c14dc6b6SHong Zhang } 26032798e883SHong Zhang PetscFunctionReturn(0); 26042798e883SHong Zhang } 26052798e883SHong Zhang 2606