1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6f3da1532SBarry Smith #include "petscblaslapack.h" 7a30f8f8cSSatish Balay 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay EXTERN_C_BEGIN 254a2ae208SSatish Balay #undef __FUNCT__ 264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 28a30f8f8cSSatish Balay { 29f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 30dfbe8321SBarry Smith PetscErrorCode ierr; 31a30f8f8cSSatish Balay 32a30f8f8cSSatish Balay PetscFunctionBegin; 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 34a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 35a30f8f8cSSatish Balay PetscFunctionReturn(0); 36a30f8f8cSSatish Balay } 37a30f8f8cSSatish Balay EXTERN_C_END 38a30f8f8cSSatish Balay 39a30f8f8cSSatish Balay EXTERN_C_BEGIN 404a2ae208SSatish Balay #undef __FUNCT__ 414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 43a30f8f8cSSatish Balay { 44f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 45dfbe8321SBarry Smith PetscErrorCode ierr; 46a30f8f8cSSatish Balay 47a30f8f8cSSatish Balay PetscFunctionBegin; 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 49a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 50a30f8f8cSSatish Balay PetscFunctionReturn(0); 51a30f8f8cSSatish Balay } 52a30f8f8cSSatish Balay EXTERN_C_END 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay 55a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 56a30f8f8cSSatish Balay { \ 57a30f8f8cSSatish Balay \ 58a30f8f8cSSatish Balay brow = row/bs; \ 59a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 60a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 61a30f8f8cSSatish Balay bcol = col/bs; \ 62a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 63a30f8f8cSSatish Balay low = 0; high = nrow; \ 64a30f8f8cSSatish Balay while (high-low > 3) { \ 65a30f8f8cSSatish Balay t = (low+high)/2; \ 66a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 67a30f8f8cSSatish Balay else low = t; \ 68a30f8f8cSSatish Balay } \ 69a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 70a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 71a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 72a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 73a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 74a30f8f8cSSatish Balay else *bap = value; \ 75a30f8f8cSSatish Balay goto a_noinsert; \ 76a30f8f8cSSatish Balay } \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 79e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 80fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 81a30f8f8cSSatish Balay N = nrow++ - 1; \ 82a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 83a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 84a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 85a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 86a30f8f8cSSatish Balay } \ 87a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 88a30f8f8cSSatish Balay rp[_i] = bcol; \ 89a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 90a30f8f8cSSatish Balay a_noinsert:; \ 91a30f8f8cSSatish Balay ailen[brow] = nrow; \ 92a30f8f8cSSatish Balay } 93e5e170daSBarry Smith 94a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 95a30f8f8cSSatish Balay { \ 96a30f8f8cSSatish Balay brow = row/bs; \ 97a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 98a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 99a30f8f8cSSatish Balay bcol = col/bs; \ 100a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 101a30f8f8cSSatish Balay low = 0; high = nrow; \ 102a30f8f8cSSatish Balay while (high-low > 3) { \ 103a30f8f8cSSatish Balay t = (low+high)/2; \ 104a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 105a30f8f8cSSatish Balay else low = t; \ 106a30f8f8cSSatish Balay } \ 107a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 108a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 109a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 110a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 111a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 112a30f8f8cSSatish Balay else *bap = value; \ 113a30f8f8cSSatish Balay goto b_noinsert; \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 117e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 118fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 119a30f8f8cSSatish Balay N = nrow++ - 1; \ 120a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 121a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 122a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 123a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 124a30f8f8cSSatish Balay } \ 125a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 126a30f8f8cSSatish Balay rp[_i] = bcol; \ 127a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 128a30f8f8cSSatish Balay b_noinsert:; \ 129a30f8f8cSSatish Balay bilen[brow] = nrow; \ 130a30f8f8cSSatish Balay } 131a30f8f8cSSatish Balay 132a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 133a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 134a30f8f8cSSatish Balay */ 1354a2ae208SSatish Balay #undef __FUNCT__ 136dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 137dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 138a30f8f8cSSatish Balay { 139a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 140a30f8f8cSSatish Balay MatScalar value; 141b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 142dfbe8321SBarry Smith PetscErrorCode ierr; 1431302d50aSBarry Smith PetscInt i,j,row,col; 144d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 145d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 146d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 147a30f8f8cSSatish Balay 148a30f8f8cSSatish Balay /* Some Variables required in the macro */ 149a30f8f8cSSatish Balay Mat A = baij->A; 150a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1511302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 152a30f8f8cSSatish Balay MatScalar *aa=a->a; 153a30f8f8cSSatish Balay 154a30f8f8cSSatish Balay Mat B = baij->B; 155a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1561302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 157a30f8f8cSSatish Balay MatScalar *ba=b->a; 158a30f8f8cSSatish Balay 1591302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1601302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 161a30f8f8cSSatish Balay MatScalar *ap,*bap; 162a30f8f8cSSatish Balay 163a30f8f8cSSatish Balay /* for stash */ 164910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 165910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 166a30f8f8cSSatish Balay 167a30f8f8cSSatish Balay PetscFunctionBegin; 16871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 169a30f8f8cSSatish Balay if (!baij->donotstash){ 17059ffdab8SBarry Smith if (n > baij->n_loc) { 17159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith baij->n_loc = n; 17659ffdab8SBarry Smith } 17759ffdab8SBarry Smith in_loc = baij->in_loc; 17859ffdab8SBarry Smith v_loc = baij->v_loc; 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 181a30f8f8cSSatish Balay for (i=0; i<m; i++) { 182a30f8f8cSSatish Balay if (im[i] < 0) continue; 1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 184e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 185a30f8f8cSSatish Balay #endif 186a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 187a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 188a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18901b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19001b2bd88SHong Zhang if (a->ignore_ltriangular){ 19101b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19201b2bd88SHong Zhang } else { 193e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19401b2bd88SHong Zhang } 19501b2bd88SHong Zhang } 196a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 197a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 198a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 199a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 200a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 201a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 202a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 203a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 205cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 206a30f8f8cSSatish Balay #endif 207a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 208a30f8f8cSSatish Balay if (mat->was_assembled) { 209a30f8f8cSSatish Balay if (!baij->colmap) { 210653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 211a30f8f8cSSatish Balay } 212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 213a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21471730473SSatish Balay col = col - 1; 215a30f8f8cSSatish Balay #else 21671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 217a30f8f8cSSatish Balay #endif 218a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 219a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 220a30f8f8cSSatish Balay col = in[j]; 221a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 222a30f8f8cSSatish Balay B = baij->B; 223a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 224a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 225a30f8f8cSSatish Balay ba=b->a; 22671730473SSatish Balay } else col += in[j]%bs; 227a30f8f8cSSatish Balay } else col = in[j]; 228a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 230a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 231a30f8f8cSSatish Balay } 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } else { /* off processor entry */ 234a30f8f8cSSatish Balay if (!baij->donotstash) { 235a30f8f8cSSatish Balay n_loc = 0; 236a30f8f8cSSatish Balay for (j=0; j<n; j++){ 237f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 238a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 239a30f8f8cSSatish Balay if (roworiented) { 240a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 241a30f8f8cSSatish Balay } else { 242a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay n_loc++; 245a30f8f8cSSatish Balay } 246b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 247a30f8f8cSSatish Balay } 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay PetscFunctionReturn(0); 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay 2534a2ae208SSatish Balay #undef __FUNCT__ 254dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 255dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 256a30f8f8cSSatish Balay { 2570880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 258f15d580aSBarry Smith const MatScalar *value; 259f15d580aSBarry Smith MatScalar *barray=baij->barray; 260f3f98c53SJed Brown PetscTruth roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 261dfbe8321SBarry Smith PetscErrorCode ierr; 262899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 263899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 264d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2650880e062SHong Zhang 266a30f8f8cSSatish Balay PetscFunctionBegin; 2670880e062SHong Zhang if(!barray) { 2680880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2690880e062SHong Zhang baij->barray = barray; 2700880e062SHong Zhang } 2710880e062SHong Zhang 2720880e062SHong Zhang if (roworiented) { 2730880e062SHong Zhang stepval = (n-1)*bs; 2740880e062SHong Zhang } else { 2750880e062SHong Zhang stepval = (m-1)*bs; 2760880e062SHong Zhang } 2770880e062SHong Zhang for (i=0; i<m; i++) { 2780880e062SHong Zhang if (im[i] < 0) continue; 2792515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 280e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2810880e062SHong Zhang #endif 2820880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2830880e062SHong Zhang row = im[i] - rstart; 2840880e062SHong Zhang for (j=0; j<n; j++) { 285f3f98c53SJed Brown if (im[i] > in[j]) { 286f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 287e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 288f3f98c53SJed Brown } 2890880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2900880e062SHong Zhang if ((roworiented) && (n == 1)) { 291f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2920880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 293f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2940880e062SHong Zhang } else { /* Here a copy is required */ 2950880e062SHong Zhang if (roworiented) { 2960880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2970880e062SHong Zhang } else { 2980880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2990880e062SHong Zhang } 3000880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3010880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3020880e062SHong Zhang *barray++ = *value++; 3030880e062SHong Zhang } 3040880e062SHong Zhang } 3050880e062SHong Zhang barray -=bs2; 3060880e062SHong Zhang } 3070880e062SHong Zhang 3080880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3090880e062SHong Zhang col = in[j] - cstart; 3100880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3110880e062SHong Zhang } 3120880e062SHong Zhang else if (in[j] < 0) continue; 3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 314cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3150880e062SHong Zhang #endif 3160880e062SHong Zhang else { 3170880e062SHong Zhang if (mat->was_assembled) { 3180880e062SHong Zhang if (!baij->colmap) { 319653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3200880e062SHong Zhang } 3210880e062SHong Zhang 3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3230880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3241302d50aSBarry Smith { PetscInt data; 3250880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 326e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3270880e062SHong Zhang } 3280880e062SHong Zhang #else 329e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3300880e062SHong Zhang #endif 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3330880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3340880e062SHong Zhang col = (col - 1)/bs; 3350880e062SHong Zhang #else 3360880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3370880e062SHong Zhang #endif 3380880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3390880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3400880e062SHong Zhang col = in[j]; 3410880e062SHong Zhang } 3420880e062SHong Zhang } 3430880e062SHong Zhang else col = in[j]; 344e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3450880e062SHong Zhang } 3460880e062SHong Zhang } 3470880e062SHong Zhang } else { 3480880e062SHong Zhang if (!baij->donotstash) { 3490880e062SHong Zhang if (roworiented) { 3500880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3510880e062SHong Zhang } else { 3520880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3530880e062SHong Zhang } 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang PetscFunctionReturn(0); 358a30f8f8cSSatish Balay } 359a30f8f8cSSatish Balay 3604a2ae208SSatish Balay #undef __FUNCT__ 3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 363a30f8f8cSSatish Balay { 364f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3656849ba73SBarry Smith PetscErrorCode ierr; 366d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 367d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 368a30f8f8cSSatish Balay 369a30f8f8cSSatish Balay PetscFunctionBegin; 370a30f8f8cSSatish Balay for (i=0; i<m; i++) { 371e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 372e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 373a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 374a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 375a30f8f8cSSatish Balay for (j=0; j<n; j++) { 376e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 377e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 378a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 379a30f8f8cSSatish Balay col = idxn[j] - bscstart; 380c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 381a30f8f8cSSatish Balay } else { 382a30f8f8cSSatish Balay if (!baij->colmap) { 383653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 384a30f8f8cSSatish Balay } 385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 386a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 387a30f8f8cSSatish Balay data --; 388a30f8f8cSSatish Balay #else 389a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 390a30f8f8cSSatish Balay #endif 391a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 392a30f8f8cSSatish Balay else { 393a30f8f8cSSatish Balay col = data + idxn[j]%bs; 394e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } else { 399e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay PetscFunctionReturn(0); 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay 4054a2ae208SSatish Balay #undef __FUNCT__ 4064a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 407dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 408a30f8f8cSSatish Balay { 409a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 410dfbe8321SBarry Smith PetscErrorCode ierr; 411a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 412a30f8f8cSSatish Balay 413a30f8f8cSSatish Balay PetscFunctionBegin; 414a30f8f8cSSatish Balay if (baij->size == 1) { 415a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 416a30f8f8cSSatish Balay } else { 417a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 418f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 419a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 421a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 422a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4237adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 424a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 425a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4260b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4270b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4280b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4290b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 430899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 431d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4320b8dc8d2SHong Zhang MatScalar *v; 4330b8dc8d2SHong Zhang 43474ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 435d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4360b8dc8d2SHong Zhang /* Amat */ 4370b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4380b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4390b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4400b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4410b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4420b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4430b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4440b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4450b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4460b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4470b8dc8d2SHong Zhang /* non-diagonal block */ 4480b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4490b8dc8d2SHong Zhang } 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang /* Bmat */ 4540b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4550b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4560b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4570b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4580b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4590b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4600b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4610b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4620b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4630b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4640b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4650b8dc8d2SHong Zhang } 4660b8dc8d2SHong Zhang } 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 469d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4700b8dc8d2SHong Zhang *norm = 0.0; 471d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4720b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4730b8dc8d2SHong Zhang } 47474ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 475a30f8f8cSSatish Balay } else { 476e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 477a30f8f8cSSatish Balay } 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay PetscFunctionReturn(0); 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay 4824a2ae208SSatish Balay #undef __FUNCT__ 4834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 484dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 485a30f8f8cSSatish Balay { 486a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 487dfbe8321SBarry Smith PetscErrorCode ierr; 4881302d50aSBarry Smith PetscInt nstash,reallocs; 489a30f8f8cSSatish Balay InsertMode addv; 490a30f8f8cSSatish Balay 491a30f8f8cSSatish Balay PetscFunctionBegin; 492a30f8f8cSSatish Balay if (baij->donotstash) { 493a30f8f8cSSatish Balay PetscFunctionReturn(0); 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay 496a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4977adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 498e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 499a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 500a30f8f8cSSatish Balay 501d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5021e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 503a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5041e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 505a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5061e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 507a30f8f8cSSatish Balay PetscFunctionReturn(0); 508a30f8f8cSSatish Balay } 509a30f8f8cSSatish Balay 5104a2ae208SSatish Balay #undef __FUNCT__ 5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 513a30f8f8cSSatish Balay { 514a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 515a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5166849ba73SBarry Smith PetscErrorCode ierr; 51713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 518e44c0bd4SBarry Smith PetscInt *row,*col; 519e44c0bd4SBarry Smith PetscTruth other_disassembled; 52013f74950SBarry Smith PetscMPIInt n; 521a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 522a30f8f8cSSatish Balay MatScalar *val; 523a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 524a30f8f8cSSatish Balay 52591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 526a30f8f8cSSatish Balay PetscFunctionBegin; 527a30f8f8cSSatish Balay 528a30f8f8cSSatish Balay if (!baij->donotstash) { 529a30f8f8cSSatish Balay while (1) { 530a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 531a30f8f8cSSatish Balay if (!flg) break; 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay for (i=0; i<n;) { 534a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 535a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 536a30f8f8cSSatish Balay if (j < n) ncols = j-i; 537a30f8f8cSSatish Balay else ncols = n-i; 538a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 539dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 540a30f8f8cSSatish Balay i = j; 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 544a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 545a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 546a30f8f8cSSatish Balay restore the original flags */ 547a30f8f8cSSatish Balay r1 = baij->roworiented; 548a30f8f8cSSatish Balay r2 = a->roworiented; 54991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 550a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 551a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 553a30f8f8cSSatish Balay while (1) { 554a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 555a30f8f8cSSatish Balay if (!flg) break; 556a30f8f8cSSatish Balay 557a30f8f8cSSatish Balay for (i=0; i<n;) { 558a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 559a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 560a30f8f8cSSatish Balay if (j < n) ncols = j-i; 561a30f8f8cSSatish Balay else ncols = n-i; 562dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 563a30f8f8cSSatish Balay i = j; 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay } 566a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 567a30f8f8cSSatish Balay baij->roworiented = r1; 568a30f8f8cSSatish Balay a->roworiented = r2; 56991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 570a30f8f8cSSatish Balay } 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 573a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 574a30f8f8cSSatish Balay 575a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 576a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 577a30f8f8cSSatish Balay /* 578a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 579a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 580a30f8f8cSSatish Balay */ 581a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5827adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 583a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 584c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay 588a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58940781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 590a30f8f8cSSatish Balay } 59191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 592a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 593a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 594a30f8f8cSSatish Balay 59574ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 596a30f8f8cSSatish Balay baij->rowvalues = 0; 5975222a1afSHong Zhang 598a30f8f8cSSatish Balay PetscFunctionReturn(0); 599a30f8f8cSSatish Balay } 600a30f8f8cSSatish Balay 601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6024a2ae208SSatish Balay #undef __FUNCT__ 6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 605a30f8f8cSSatish Balay { 606a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 607dfbe8321SBarry Smith PetscErrorCode ierr; 608d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6091302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61032077d6dSBarry Smith PetscTruth iascii,isdraw; 611b0a32e0cSBarry Smith PetscViewer sviewer; 612f3ef73ceSBarry Smith PetscViewerFormat format; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay PetscFunctionBegin; 6152692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6162692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61732077d6dSBarry Smith if (iascii) { 618b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 619456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 620a30f8f8cSSatish Balay MatInfo info; 6217adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 622a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 624d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 625d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 626a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 62777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 628a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 62977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 630b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 632a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 633a30f8f8cSSatish Balay PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 638c1490034SHong Zhang PetscFunctionReturn(0); 639a30f8f8cSSatish Balay } 640a30f8f8cSSatish Balay } 641a30f8f8cSSatish Balay 642a30f8f8cSSatish Balay if (isdraw) { 643b0a32e0cSBarry Smith PetscDraw draw; 644a30f8f8cSSatish Balay PetscTruth isnull; 645b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 646b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 647a30f8f8cSSatish Balay } 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay if (size == 1) { 6507adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 651a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 652a30f8f8cSSatish Balay } else { 653a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 654a30f8f8cSSatish Balay Mat A; 65565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 657d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 658a30f8f8cSSatish Balay MatScalar *a; 659a30f8f8cSSatish Balay 660f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6617adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 662a30f8f8cSSatish Balay if (!rank) { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } else { 665f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 668d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 66952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay /* copy over the A part */ 67265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 673a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6741302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 675a30f8f8cSSatish Balay 676a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 677e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 678a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 679a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 680e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 681a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 682dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 683a30f8f8cSSatish Balay col++; a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 693a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 698a30f8f8cSSatish Balay col++; a += bs; 699a30f8f8cSSatish Balay } 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay /* 706a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 707b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 708a30f8f8cSSatish Balay */ 709b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71065d70643SHong Zhang if (!rank) { 7117adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 712a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 713a30f8f8cSSatish Balay } 714b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717a30f8f8cSSatish Balay PetscFunctionReturn(0); 718a30f8f8cSSatish Balay } 719a30f8f8cSSatish Balay 7204a2ae208SSatish Balay #undef __FUNCT__ 7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 723a30f8f8cSSatish Balay { 724dfbe8321SBarry Smith PetscErrorCode ierr; 72532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 726a30f8f8cSSatish Balay 727a30f8f8cSSatish Balay PetscFunctionBegin; 7282692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 7292692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7302692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 7312692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 733a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 734a30f8f8cSSatish Balay } else { 735e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay PetscFunctionReturn(0); 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay 7404a2ae208SSatish Balay #undef __FUNCT__ 7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 743a30f8f8cSSatish Balay { 744a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 745dfbe8321SBarry Smith PetscErrorCode ierr; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay PetscFunctionBegin; 748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 749d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 750a30f8f8cSSatish Balay #endif 751a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 752a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 754a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7569c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 757a30f8f8cSSatish Balay #else 75805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 759a30f8f8cSSatish Balay #endif 76005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 761a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 762a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76340781036SHong Zhang if (baij->slvec0) { 76440781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76540781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76640781036SHong Zhang } 76740781036SHong Zhang if (baij->slvec1) { 76840781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 76940781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77040781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77140781036SHong Zhang } 77240781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 7735755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77505b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 776fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 777fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 778fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 77965460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 78005b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 781a30f8f8cSSatish Balay #endif 78259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 784899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 786901853e0SKris Buschelman 787dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 788901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 789901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 790901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 792a30f8f8cSSatish Balay PetscFunctionReturn(0); 793a30f8f8cSSatish Balay } 794a30f8f8cSSatish Balay 7954a2ae208SSatish Balay #undef __FUNCT__ 796547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 797547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 798547795f9SHong Zhang { 799547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 800547795f9SHong Zhang PetscErrorCode ierr; 801547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 802547795f9SHong Zhang PetscScalar *x,*from; 803547795f9SHong Zhang 804547795f9SHong Zhang PetscFunctionBegin; 805547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 806e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 807547795f9SHong Zhang 808547795f9SHong Zhang /* diagonal part */ 809547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 810547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 811547795f9SHong Zhang 812547795f9SHong Zhang /* subdiagonal part */ 813547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 814547795f9SHong Zhang 815547795f9SHong Zhang /* copy x into the vec slvec0 */ 816547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 817547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 818547795f9SHong Zhang 819547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 820547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 821547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 822547795f9SHong Zhang 823547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 824547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 825547795f9SHong Zhang /* supperdiagonal part */ 826547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 827547795f9SHong Zhang PetscFunctionReturn(0); 828547795f9SHong Zhang } 829547795f9SHong Zhang 830547795f9SHong Zhang #undef __FUNCT__ 831a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 832dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 833a9d4b620SHong Zhang { 834a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 835dfbe8321SBarry Smith PetscErrorCode ierr; 836d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 837fa22f6d0SBarry Smith PetscScalar *x,*from; 838a9d4b620SHong Zhang 839a9d4b620SHong Zhang PetscFunctionBegin; 840a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 841e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 842a9d4b620SHong Zhang 843a9d4b620SHong Zhang /* diagonal part */ 844a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 845fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 846a9d4b620SHong Zhang 847a9d4b620SHong Zhang /* subdiagonal part */ 848a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 849fc165ae2SBarry Smith 850a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8511ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8521ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 853a9d4b620SHong Zhang 854fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 855fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8561ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 857fc165ae2SBarry Smith 858fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 859ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 860a9d4b620SHong Zhang /* supperdiagonal part */ 861a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 862a9d4b620SHong Zhang PetscFunctionReturn(0); 863a9d4b620SHong Zhang } 864a9d4b620SHong Zhang 865a9d4b620SHong Zhang #undef __FUNCT__ 86640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 867dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 868a30f8f8cSSatish Balay { 869a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 870dfbe8321SBarry Smith PetscErrorCode ierr; 8711302d50aSBarry Smith PetscInt nt; 872a30f8f8cSSatish Balay 873a30f8f8cSSatish Balay PetscFunctionBegin; 874a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 875e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 876e7e72b3dSBarry Smith 877a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 878e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 87965d70643SHong Zhang 880ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 881b941877fSHong Zhang /* do diagonal part */ 882b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 883b941877fSHong Zhang /* do supperdiagonal part */ 884ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 885b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 886b941877fSHong Zhang /* do subdiagonal part */ 887b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 888ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 889ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 89065d70643SHong Zhang 891a30f8f8cSSatish Balay PetscFunctionReturn(0); 892a30f8f8cSSatish Balay } 893a30f8f8cSSatish Balay 8944a2ae208SSatish Balay #undef __FUNCT__ 8954a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 896dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 897a30f8f8cSSatish Balay { 898de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 899dfbe8321SBarry Smith PetscErrorCode ierr; 900d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 901a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 902a9d4b620SHong Zhang 903a9d4b620SHong Zhang PetscFunctionBegin; 904a9d4b620SHong Zhang /* 9057adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9067adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 907a9d4b620SHong Zhang */ 908a9d4b620SHong Zhang /* diagonal part */ 909a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9102dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 911a9d4b620SHong Zhang 912a9d4b620SHong Zhang /* subdiagonal part */ 913a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 914a9d4b620SHong Zhang 915a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9161ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9171ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 918a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9191ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 920a9d4b620SHong Zhang 921ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9221ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 923ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 924a9d4b620SHong Zhang 925a9d4b620SHong Zhang /* supperdiagonal part */ 926a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 927a9d4b620SHong Zhang 928a9d4b620SHong Zhang PetscFunctionReturn(0); 929a9d4b620SHong Zhang } 930a9d4b620SHong Zhang 931a9d4b620SHong Zhang #undef __FUNCT__ 932a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 933dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 934a9d4b620SHong Zhang { 935a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 936dfbe8321SBarry Smith PetscErrorCode ierr; 937a30f8f8cSSatish Balay 938a30f8f8cSSatish Balay PetscFunctionBegin; 939ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 940b941877fSHong Zhang /* do diagonal part */ 941b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 942b941877fSHong Zhang /* do supperdiagonal part */ 943ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 944de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 945de8b6608SHong Zhang 946b941877fSHong Zhang /* do subdiagonal part */ 947a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 948ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 949ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 950aa482183SHong Zhang 951a30f8f8cSSatish Balay PetscFunctionReturn(0); 952a30f8f8cSSatish Balay } 953a30f8f8cSSatish Balay 954a30f8f8cSSatish Balay /* 955a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 956a30f8f8cSSatish Balay diagonal block 957a30f8f8cSSatish Balay */ 9584a2ae208SSatish Balay #undef __FUNCT__ 9594a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 960dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 961a30f8f8cSSatish Balay { 962a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 963dfbe8321SBarry Smith PetscErrorCode ierr; 964a30f8f8cSSatish Balay 965a30f8f8cSSatish Balay PetscFunctionBegin; 966e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 967a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 968a30f8f8cSSatish Balay PetscFunctionReturn(0); 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay 9714a2ae208SSatish Balay #undef __FUNCT__ 9724a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 973f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 974a30f8f8cSSatish Balay { 975a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 976dfbe8321SBarry Smith PetscErrorCode ierr; 977a30f8f8cSSatish Balay 978a30f8f8cSSatish Balay PetscFunctionBegin; 979f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 980f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 981a30f8f8cSSatish Balay PetscFunctionReturn(0); 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay 9844a2ae208SSatish Balay #undef __FUNCT__ 9854a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9861302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 987a30f8f8cSSatish Balay { 988d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 989d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 990d0d4cfc2SHong Zhang PetscErrorCode ierr; 991d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 992d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 993899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 994d0d4cfc2SHong Zhang 995a30f8f8cSSatish Balay PetscFunctionBegin; 996e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 997d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 998d0d4cfc2SHong Zhang 999d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1000d0d4cfc2SHong Zhang /* 1001d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1002d0d4cfc2SHong Zhang */ 1003d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1004d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1005d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1006d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1007d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1008d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1009d0d4cfc2SHong Zhang } 101074ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1011d0d4cfc2SHong Zhang } 1012d0d4cfc2SHong Zhang 1013e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1014d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1015d0d4cfc2SHong Zhang 1016d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1017d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1018d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1019d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1020d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1021d0d4cfc2SHong Zhang nztot = nzA + nzB; 1022d0d4cfc2SHong Zhang 1023d0d4cfc2SHong Zhang cmap = mat->garray; 1024d0d4cfc2SHong Zhang if (v || idx) { 1025d0d4cfc2SHong Zhang if (nztot) { 1026d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1027d0d4cfc2SHong Zhang PetscInt imark = -1; 1028d0d4cfc2SHong Zhang if (v) { 1029d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1030d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1031d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1032d0d4cfc2SHong Zhang else break; 1033d0d4cfc2SHong Zhang } 1034d0d4cfc2SHong Zhang imark = i; 1035d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1036d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1037d0d4cfc2SHong Zhang } 1038d0d4cfc2SHong Zhang if (idx) { 1039d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1040d0d4cfc2SHong Zhang if (imark > -1) { 1041d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1042d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1043d0d4cfc2SHong Zhang } 1044d0d4cfc2SHong Zhang } else { 1045d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1046d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1047d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1048d0d4cfc2SHong Zhang else break; 1049d0d4cfc2SHong Zhang } 1050d0d4cfc2SHong Zhang imark = i; 1051d0d4cfc2SHong Zhang } 1052d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1053d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1054d0d4cfc2SHong Zhang } 1055d0d4cfc2SHong Zhang } else { 1056d0d4cfc2SHong Zhang if (idx) *idx = 0; 1057d0d4cfc2SHong Zhang if (v) *v = 0; 1058d0d4cfc2SHong Zhang } 1059d0d4cfc2SHong Zhang } 1060d0d4cfc2SHong Zhang *nz = nztot; 1061d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1062d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1063a30f8f8cSSatish Balay PetscFunctionReturn(0); 1064a30f8f8cSSatish Balay } 1065a30f8f8cSSatish Balay 10664a2ae208SSatish Balay #undef __FUNCT__ 10674a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10681302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1069a30f8f8cSSatish Balay { 1070a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1071a30f8f8cSSatish Balay 1072a30f8f8cSSatish Balay PetscFunctionBegin; 1073e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1074a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1075a30f8f8cSSatish Balay PetscFunctionReturn(0); 1076a30f8f8cSSatish Balay } 1077a30f8f8cSSatish Balay 10784a2ae208SSatish Balay #undef __FUNCT__ 1079d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1080d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1081d0d4cfc2SHong Zhang { 1082d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1083d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1084d0d4cfc2SHong Zhang 1085d0d4cfc2SHong Zhang PetscFunctionBegin; 1086d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1087d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1088d0d4cfc2SHong Zhang } 1089d0d4cfc2SHong Zhang #undef __FUNCT__ 1090d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1091d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1092d0d4cfc2SHong Zhang { 1093d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1094d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1095d0d4cfc2SHong Zhang 1096d0d4cfc2SHong Zhang PetscFunctionBegin; 1097d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1098d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1099d0d4cfc2SHong Zhang } 1100d0d4cfc2SHong Zhang 1101d0d4cfc2SHong Zhang #undef __FUNCT__ 110299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 110399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 110499cafbc1SBarry Smith { 110599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110699cafbc1SBarry Smith PetscErrorCode ierr; 110799cafbc1SBarry Smith 110899cafbc1SBarry Smith PetscFunctionBegin; 110999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 111099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 111199cafbc1SBarry Smith PetscFunctionReturn(0); 111299cafbc1SBarry Smith } 111399cafbc1SBarry Smith 111499cafbc1SBarry Smith #undef __FUNCT__ 111599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111799cafbc1SBarry Smith { 111899cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111999cafbc1SBarry Smith PetscErrorCode ierr; 112099cafbc1SBarry Smith 112199cafbc1SBarry Smith PetscFunctionBegin; 112299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 112399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 112499cafbc1SBarry Smith PetscFunctionReturn(0); 112599cafbc1SBarry Smith } 112699cafbc1SBarry Smith 112799cafbc1SBarry Smith #undef __FUNCT__ 11284a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1129dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1130a30f8f8cSSatish Balay { 1131a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1132dfbe8321SBarry Smith PetscErrorCode ierr; 1133a30f8f8cSSatish Balay 1134a30f8f8cSSatish Balay PetscFunctionBegin; 1135a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1136a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay PetscFunctionReturn(0); 1138a30f8f8cSSatish Balay } 1139a30f8f8cSSatish Balay 11404a2ae208SSatish Balay #undef __FUNCT__ 11414a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1142dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1143a30f8f8cSSatish Balay { 1144a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1145a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1146dfbe8321SBarry Smith PetscErrorCode ierr; 1147a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1148a30f8f8cSSatish Balay 1149a30f8f8cSSatish Balay PetscFunctionBegin; 1150d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1151a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1152a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1153a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1154a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1155a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1156a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1157a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1158a30f8f8cSSatish Balay info->nz_used = isend[0]; 1159a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1160a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1161a30f8f8cSSatish Balay info->memory = isend[3]; 1162a30f8f8cSSatish Balay info->mallocs = isend[4]; 1163a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11647adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1165a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1166a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1167a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1168a30f8f8cSSatish Balay info->memory = irecv[3]; 1169a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1170a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11717adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1172a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1173a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1174a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1175a30f8f8cSSatish Balay info->memory = irecv[3]; 1176a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1177a30f8f8cSSatish Balay } else { 1178e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1179a30f8f8cSSatish Balay } 1180a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1181a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1182a30f8f8cSSatish Balay info->factor_mallocs = 0; 1183a30f8f8cSSatish Balay PetscFunctionReturn(0); 1184a30f8f8cSSatish Balay } 1185a30f8f8cSSatish Balay 11864a2ae208SSatish Balay #undef __FUNCT__ 11874a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 11884e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1189a30f8f8cSSatish Balay { 1190a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1191d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1192dfbe8321SBarry Smith PetscErrorCode ierr; 1193a30f8f8cSSatish Balay 1194a30f8f8cSSatish Balay PetscFunctionBegin; 1195e98b92d7SKris Buschelman switch (op) { 1196512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1197e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 119828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1199a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1200e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12014e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12024e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1203e98b92d7SKris Buschelman break; 1204e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12054e0d8c25SBarry Smith a->roworiented = flg; 12064e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12074e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1208e98b92d7SKris Buschelman break; 12094e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1210290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1211e98b92d7SKris Buschelman break; 1212e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12134e0d8c25SBarry Smith a->donotstash = flg; 1214e98b92d7SKris Buschelman break; 1215e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12164e0d8c25SBarry Smith a->ht_flag = flg; 1217e98b92d7SKris Buschelman break; 12189a4540c5SBarry Smith case MAT_HERMITIAN: 1219e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1220eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1221547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1222eeffb40dSHong Zhang break; 122377e54ba9SKris Buschelman case MAT_SYMMETRIC: 1224eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1225eeffb40dSHong Zhang break; 122677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1227eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1228eeffb40dSHong Zhang break; 12299a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1230e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1231290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 123277e54ba9SKris Buschelman break; 1233d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12344e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1235d0d4cfc2SHong Zhang break; 1236d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12374e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1238d0d4cfc2SHong Zhang break; 1239d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12404e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1241d0d4cfc2SHong Zhang break; 1242e98b92d7SKris Buschelman default: 1243e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1244a30f8f8cSSatish Balay } 1245a30f8f8cSSatish Balay PetscFunctionReturn(0); 1246a30f8f8cSSatish Balay } 1247a30f8f8cSSatish Balay 12484a2ae208SSatish Balay #undef __FUNCT__ 12498115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1250fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1251a30f8f8cSSatish Balay { 1252dfbe8321SBarry Smith PetscErrorCode ierr; 1253a30f8f8cSSatish Balay PetscFunctionBegin; 1254815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1255999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1256fc4dec0aSBarry Smith } 12578115998fSBarry Smith PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12614a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1262dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1263a30f8f8cSSatish Balay { 1264a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1265a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1266dfbe8321SBarry Smith PetscErrorCode ierr; 12675e90f9d9SHong Zhang PetscInt nv,m,n; 1268b3bf805bSHong Zhang PetscTruth flg; 1269a30f8f8cSSatish Balay 1270a30f8f8cSSatish Balay PetscFunctionBegin; 1271a30f8f8cSSatish Balay if (ll != rr){ 1272b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1273e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1274a30f8f8cSSatish Balay } 1275b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1276b3bf805bSHong Zhang 12775e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1278e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1279b3bf805bSHong Zhang 12805e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1281e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12825e90f9d9SHong Zhang 1283ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12845e90f9d9SHong Zhang 12855e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1286a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12875e90f9d9SHong Zhang 12885e90f9d9SHong Zhang /* scale the diagonal part */ 1289a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay 12915e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1292ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1293a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1294a30f8f8cSSatish Balay PetscFunctionReturn(0); 1295a30f8f8cSSatish Balay } 1296a30f8f8cSSatish Balay 12974a2ae208SSatish Balay #undef __FUNCT__ 12984a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1299dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1300a30f8f8cSSatish Balay { 1301f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1302dfbe8321SBarry Smith PetscErrorCode ierr; 1303a30f8f8cSSatish Balay 1304a30f8f8cSSatish Balay PetscFunctionBegin; 1305a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay PetscFunctionReturn(0); 1307a30f8f8cSSatish Balay } 1308a30f8f8cSSatish Balay 13096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1310a30f8f8cSSatish Balay 13114a2ae208SSatish Balay #undef __FUNCT__ 13124a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1313dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1314a30f8f8cSSatish Balay { 1315a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1316a30f8f8cSSatish Balay Mat a,b,c,d; 1317a30f8f8cSSatish Balay PetscTruth flg; 1318dfbe8321SBarry Smith PetscErrorCode ierr; 1319a30f8f8cSSatish Balay 1320a30f8f8cSSatish Balay PetscFunctionBegin; 1321a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1322a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1323a30f8f8cSSatish Balay 1324a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1325abc0a331SBarry Smith if (flg) { 1326a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1327a30f8f8cSSatish Balay } 13287adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay PetscFunctionReturn(0); 1330a30f8f8cSSatish Balay } 1331a30f8f8cSSatish Balay 13324a2ae208SSatish Balay #undef __FUNCT__ 13333c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13343c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13353c896bc6SHong Zhang { 13363c896bc6SHong Zhang PetscErrorCode ierr; 13373c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13383c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13393c896bc6SHong Zhang 13403c896bc6SHong Zhang PetscFunctionBegin; 13413c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13423c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1343d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13443c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1345d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13463c896bc6SHong Zhang } else { 13473c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13483c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13493c896bc6SHong Zhang } 13503c896bc6SHong Zhang PetscFunctionReturn(0); 13513c896bc6SHong Zhang } 13523c896bc6SHong Zhang 13533c896bc6SHong Zhang #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1356273d9f13SBarry Smith { 1357dfbe8321SBarry Smith PetscErrorCode ierr; 1358273d9f13SBarry Smith 1359273d9f13SBarry Smith PetscFunctionBegin; 1360db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1361273d9f13SBarry Smith PetscFunctionReturn(0); 1362273d9f13SBarry Smith } 1363a5e6ed63SBarry Smith 13644fe895cdSHong Zhang #undef __FUNCT__ 13654fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13664fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13674fe895cdSHong Zhang { 13684fe895cdSHong Zhang PetscErrorCode ierr; 13694fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13704fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13714fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13724fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13734fe895cdSHong Zhang 13744fe895cdSHong Zhang PetscFunctionBegin; 13754fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13764fe895cdSHong Zhang PetscScalar alpha = a; 13774fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13784fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13790805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13804fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13814fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13824fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13830805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13844fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13854fe895cdSHong Zhang } else { 1386d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13874fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1388d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 13894fe895cdSHong Zhang } 13904fe895cdSHong Zhang PetscFunctionReturn(0); 13914fe895cdSHong Zhang } 13924fe895cdSHong Zhang 1393a5e6ed63SBarry Smith #undef __FUNCT__ 13946363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 13956363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 13966363de48SJed Brown { 13976363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13986363de48SJed Brown PetscInt rbs,cbs; 13996363de48SJed Brown PetscErrorCode ierr; 14006363de48SJed Brown 14016363de48SJed Brown PetscFunctionBegin; 14026363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14036363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14046363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14056363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1406e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 1407e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14086363de48SJed Brown PetscFunctionReturn(0); 14096363de48SJed Brown } 14106363de48SJed Brown 14116363de48SJed Brown #undef __FUNCT__ 1412a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14131302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1414a5e6ed63SBarry Smith { 14156849ba73SBarry Smith PetscErrorCode ierr; 14161302d50aSBarry Smith PetscInt i; 1417a5e6ed63SBarry Smith PetscTruth flg; 1418a5e6ed63SBarry Smith 14196849ba73SBarry Smith PetscFunctionBegin; 1420a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1421a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1422e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1423a5e6ed63SBarry Smith } 1424a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1425a5e6ed63SBarry Smith PetscFunctionReturn(0); 1426a5e6ed63SBarry Smith } 1427a5e6ed63SBarry Smith 1428a5e6ed63SBarry Smith 1429a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1430a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1431a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1432a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1433a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1434a9d4b620SHong Zhang MatMult_MPISBAIJ, 143597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1436431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1437431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1438a30f8f8cSSatish Balay 0, 1439a30f8f8cSSatish Balay 0, 1440a30f8f8cSSatish Balay 0, 144197304618SKris Buschelman /*10*/ 0, 1442a30f8f8cSSatish Balay 0, 1443a30f8f8cSSatish Balay 0, 144441f059aeSBarry Smith MatSOR_MPISBAIJ, 1445a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 144697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1447a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1448a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1449a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1450a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 145197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1452a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1453a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1454a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1455d519adbfSMatthew Knepley /*24*/ 0, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1461b5df2d14SHong Zhang 0, 1462a30f8f8cSSatish Balay 0, 1463a30f8f8cSSatish Balay 0, 1464a30f8f8cSSatish Balay 0, 1465d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1466a30f8f8cSSatish Balay 0, 1467a30f8f8cSSatish Balay 0, 1468a30f8f8cSSatish Balay 0, 1469a30f8f8cSSatish Balay 0, 1470d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1471a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1472d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1473a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14743c896bc6SHong Zhang MatCopy_MPISBAIJ, 1475d519adbfSMatthew Knepley /*44*/ 0, 1476a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1477a30f8f8cSSatish Balay 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 14806363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485d519adbfSMatthew Knepley /*54*/ 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1490d519adbfSMatthew Knepley /*59*/ 0, 1491a30f8f8cSSatish Balay 0, 1492a30f8f8cSSatish Balay 0, 1493357abbc8SBarry Smith 0, 149424d5174aSHong Zhang 0, 1495d519adbfSMatthew Knepley /*64*/ 0, 149624d5174aSHong Zhang 0, 149724d5174aSHong Zhang 0, 149824d5174aSHong Zhang 0, 149924d5174aSHong Zhang 0, 1500d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 150124d5174aSHong Zhang 0, 150297304618SKris Buschelman 0, 150397304618SKris Buschelman 0, 150497304618SKris Buschelman 0, 1505d519adbfSMatthew Knepley /*74*/ 0, 150697304618SKris Buschelman 0, 150797304618SKris Buschelman 0, 150897304618SKris Buschelman 0, 150997304618SKris Buschelman 0, 1510d519adbfSMatthew Knepley /*79*/ 0, 151197304618SKris Buschelman 0, 151297304618SKris Buschelman 0, 151397304618SKris Buschelman 0, 1514865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1515d519adbfSMatthew Knepley /*84*/ 0, 1516865e5f61SKris Buschelman 0, 1517865e5f61SKris Buschelman 0, 1518865e5f61SKris Buschelman 0, 1519865e5f61SKris Buschelman 0, 1520d519adbfSMatthew Knepley /*89*/ 0, 1521865e5f61SKris Buschelman 0, 1522865e5f61SKris Buschelman 0, 1523865e5f61SKris Buschelman 0, 1524865e5f61SKris Buschelman 0, 1525d519adbfSMatthew Knepley /*94*/ 0, 1526865e5f61SKris Buschelman 0, 1527865e5f61SKris Buschelman 0, 152899cafbc1SBarry Smith 0, 152999cafbc1SBarry Smith 0, 1530d519adbfSMatthew Knepley /*99*/ 0, 153199cafbc1SBarry Smith 0, 153299cafbc1SBarry Smith 0, 153399cafbc1SBarry Smith 0, 153499cafbc1SBarry Smith 0, 1535d519adbfSMatthew Knepley /*104*/0, 153699cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1537d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1538d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1539*95936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1540*95936485SShri Abhyankar /*109*/0, 1541*95936485SShri Abhyankar 0, 1542*95936485SShri Abhyankar 0, 1543*95936485SShri Abhyankar 0, 1544*95936485SShri Abhyankar 0, 1545*95936485SShri Abhyankar /*114*/0, 1546*95936485SShri Abhyankar 0, 1547*95936485SShri Abhyankar 0, 1548*95936485SShri Abhyankar 0, 1549*95936485SShri Abhyankar 0, 1550*95936485SShri Abhyankar /*119*/0, 1551*95936485SShri Abhyankar 0, 1552*95936485SShri Abhyankar 0, 1553*95936485SShri Abhyankar 0, 1554*95936485SShri Abhyankar MatLoadnew_MPISBAIJ 155599cafbc1SBarry Smith }; 1556a30f8f8cSSatish Balay 1557a30f8f8cSSatish Balay 1558a30f8f8cSSatish Balay EXTERN_C_BEGIN 15594a2ae208SSatish Balay #undef __FUNCT__ 15604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1561be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1562a30f8f8cSSatish Balay { 1563a30f8f8cSSatish Balay PetscFunctionBegin; 1564a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1565a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1566a30f8f8cSSatish Balay PetscFunctionReturn(0); 1567a30f8f8cSSatish Balay } 1568a30f8f8cSSatish Balay EXTERN_C_END 1569a30f8f8cSSatish Balay 1570273d9f13SBarry Smith EXTERN_C_BEGIN 15714a2ae208SSatish Balay #undef __FUNCT__ 1572a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1573be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1574a23d5eceSKris Buschelman { 1575a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1576dfbe8321SBarry Smith PetscErrorCode ierr; 1577db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1578a23d5eceSKris Buschelman 1579a23d5eceSKris Buschelman PetscFunctionBegin; 1580db4efbfdSBarry Smith if (bs < 0){ 15817adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1582db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15838c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1584db4efbfdSBarry Smith bs = PetscAbs(bs); 1585db4efbfdSBarry Smith } 1586e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1587db4efbfdSBarry Smith bs = newbs; 1588a23d5eceSKris Buschelman 1589a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1590a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1591e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 1592e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1593899cda47SBarry Smith 1594d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 159526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1597899cda47SBarry Smith 1598a23d5eceSKris Buschelman if (d_nnz) { 1599d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1600e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1601a23d5eceSKris Buschelman } 1602a23d5eceSKris Buschelman } 1603a23d5eceSKris Buschelman if (o_nnz) { 1604d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 1605e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1606a23d5eceSKris Buschelman } 1607a23d5eceSKris Buschelman } 1608a23d5eceSKris Buschelman 1609a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1610d0f46423SBarry Smith mbs = B->rmap->n/bs; 1611d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1612d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1613e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1614a23d5eceSKris Buschelman } 1615a23d5eceSKris Buschelman 1616d0f46423SBarry Smith B->rmap->bs = bs; 1617a23d5eceSKris Buschelman b->bs2 = bs*bs; 1618a23d5eceSKris Buschelman b->mbs = mbs; 1619a23d5eceSKris Buschelman b->nbs = mbs; 1620a23d5eceSKris Buschelman b->Mbs = Mbs; 1621a23d5eceSKris Buschelman b->Nbs = Mbs; 1622a23d5eceSKris Buschelman 1623a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1624d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1625a23d5eceSKris Buschelman } 1626d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1627d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1628a23d5eceSKris Buschelman 1629d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1630d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1631a23d5eceSKris Buschelman 1632526dfc15SBarry Smith if (!B->preallocated) { 1633f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1634d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16359c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 163652e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1637f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1638d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16394aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 164052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 164115bb146dSJed Brown ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 1642526dfc15SBarry Smith } 1643a23d5eceSKris Buschelman 1644526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1645526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1646526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1647a23d5eceSKris Buschelman PetscFunctionReturn(0); 1648a23d5eceSKris Buschelman } 1649a23d5eceSKris Buschelman EXTERN_C_END 1650a23d5eceSKris Buschelman 16515c9eb25fSBarry Smith EXTERN_C_BEGIN 1652611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1653bccb9932SShri Abhyankar extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1654611f576cSBarry Smith #endif 1655611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16565c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1657611f576cSBarry Smith #endif 1658b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1659b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1660b5e56a35SBarry Smith #endif 16615c9eb25fSBarry Smith EXTERN_C_END 16625c9eb25fSBarry Smith 16630bad9183SKris Buschelman /*MC 1664fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16650bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16660bad9183SKris Buschelman 16670bad9183SKris Buschelman Options Database Keys: 16680bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16690bad9183SKris Buschelman 16700bad9183SKris Buschelman Level: beginner 16710bad9183SKris Buschelman 16720bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16730bad9183SKris Buschelman M*/ 16740bad9183SKris Buschelman 1675a23d5eceSKris Buschelman EXTERN_C_BEGIN 1676a23d5eceSKris Buschelman #undef __FUNCT__ 16774a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1678be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1679b5df2d14SHong Zhang { 1680b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1681dfbe8321SBarry Smith PetscErrorCode ierr; 1682b5df2d14SHong Zhang PetscTruth flg; 1683b5df2d14SHong Zhang 1684b5df2d14SHong Zhang PetscFunctionBegin; 1685b5df2d14SHong Zhang 168638f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1687b0a32e0cSBarry Smith B->data = (void*)b; 1688b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1689b5df2d14SHong Zhang 1690b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1691b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1692b5df2d14SHong Zhang B->mapping = 0; 1693b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1694b5df2d14SHong Zhang 1695b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16967adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 16977adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1700899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang /* build cache for off array entries formed */ 17037adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1704b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1705b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1706b5df2d14SHong Zhang b->garray = PETSC_NULL; 1707b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1708b5df2d14SHong Zhang 1709b5df2d14SHong Zhang /* stuff used in block assembly */ 1710b5df2d14SHong Zhang b->barray = 0; 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1713b5df2d14SHong Zhang b->lvec = 0; 1714b5df2d14SHong Zhang b->Mvctx = 0; 171540781036SHong Zhang b->slvec0 = 0; 171640781036SHong Zhang b->slvec0b = 0; 171740781036SHong Zhang b->slvec1 = 0; 171840781036SHong Zhang b->slvec1a = 0; 171940781036SHong Zhang b->slvec1b = 0; 172040781036SHong Zhang b->sMvctx = 0; 1721b5df2d14SHong Zhang 1722b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1723b5df2d14SHong Zhang b->rowindices = 0; 1724b5df2d14SHong Zhang b->rowvalues = 0; 1725b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1726b5df2d14SHong Zhang 1727b5df2d14SHong Zhang /* hash table stuff */ 1728b5df2d14SHong Zhang b->ht = 0; 1729b5df2d14SHong Zhang b->hd = 0; 1730b5df2d14SHong Zhang b->ht_size = 0; 1731b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1732b5df2d14SHong Zhang b->ht_fact = 0; 1733b5df2d14SHong Zhang b->ht_total_ct = 0; 1734b5df2d14SHong Zhang b->ht_insert_ct = 0; 1735b5df2d14SHong Zhang 173659ffdab8SBarry Smith b->in_loc = 0; 173759ffdab8SBarry Smith b->v_loc = 0; 173859ffdab8SBarry Smith b->n_loc = 0; 17397adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17408c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1741b5df2d14SHong Zhang if (flg) { 1742f6275e2eSBarry Smith PetscReal fact = 1.39; 17434e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17448c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1745b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1746b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17471e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1748b5df2d14SHong Zhang } 17498c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17508c07d4e3SBarry Smith 1751b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1752ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1753b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1754b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1755b5e56a35SBarry Smith #endif 1756611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1757ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 1758bccb9932SShri Abhyankar "MatGetFactor_sbaij_mumps", 1759bccb9932SShri Abhyankar MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1760611f576cSBarry Smith #endif 1761611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1762ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17635c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17645c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1765611f576cSBarry Smith #endif 1766b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1767b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1768b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1769b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1770b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1771b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1772b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1773b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1774b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1775a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1776a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1777a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 177823ce1328SBarry Smith B->symmetric = PETSC_TRUE; 177923ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178023ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178123ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1783b5df2d14SHong Zhang PetscFunctionReturn(0); 1784b5df2d14SHong Zhang } 1785273d9f13SBarry Smith EXTERN_C_END 1786b5df2d14SHong Zhang 1787209238afSKris Buschelman /*MC 1788002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1789209238afSKris Buschelman 1790209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1791209238afSKris Buschelman and MATMPISBAIJ otherwise. 1792209238afSKris Buschelman 1793209238afSKris Buschelman Options Database Keys: 1794209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1795209238afSKris Buschelman 1796209238afSKris Buschelman Level: beginner 1797209238afSKris Buschelman 1798209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1799209238afSKris Buschelman M*/ 1800209238afSKris Buschelman 1801209238afSKris Buschelman EXTERN_C_BEGIN 1802209238afSKris Buschelman #undef __FUNCT__ 1803209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1804be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1805dfbe8321SBarry Smith { 18066849ba73SBarry Smith PetscErrorCode ierr; 18071302d50aSBarry Smith PetscMPIInt size; 1808209238afSKris Buschelman 1809209238afSKris Buschelman PetscFunctionBegin; 18107adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1811209238afSKris Buschelman if (size == 1) { 1812209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1813209238afSKris Buschelman } else { 1814209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1815209238afSKris Buschelman } 1816209238afSKris Buschelman PetscFunctionReturn(0); 1817209238afSKris Buschelman } 1818209238afSKris Buschelman EXTERN_C_END 1819209238afSKris Buschelman 18204a2ae208SSatish Balay #undef __FUNCT__ 18214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1822b5df2d14SHong Zhang /*@C 1823b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1824b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1825b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1826b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1827b5df2d14SHong Zhang 1828b5df2d14SHong Zhang Collective on Mat 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang Input Parameters: 1831b5df2d14SHong Zhang + A - the matrix 1832b5df2d14SHong Zhang . bs - size of blockk 1833b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1834b5df2d14SHong Zhang submatrix (same for all local rows) 1835b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18366d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18376d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18386d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1839b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1840b5df2d14SHong Zhang submatrix (same for all local rows). 1841b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1842b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1843b5df2d14SHong Zhang each block row) or PETSC_NULL. 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang 1846b5df2d14SHong Zhang Options Database Keys: 1847b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1848b5df2d14SHong Zhang block calculations (much slower) 1849b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1850b5df2d14SHong Zhang 1851b5df2d14SHong Zhang Notes: 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1854b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1855b5df2d14SHong Zhang 185649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 185749a6f317SBarry Smith 1858b5df2d14SHong Zhang Storage Information: 1859b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1860b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1861b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1862b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1863b5df2d14SHong Zhang 1864b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1865b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1866b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1867b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1868b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1869b5df2d14SHong Zhang 1870aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1871aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1872aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1873aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1874aa95bbe8SBarry Smith 1875b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1876b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1877b5df2d14SHong Zhang 1878b5df2d14SHong Zhang .vb 1879b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1880b5df2d14SHong Zhang ------------------- 1881b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1882b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1883b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1884b5df2d14SHong Zhang ------------------- 1885b5df2d14SHong Zhang .ve 1886b5df2d14SHong Zhang 1887b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1888b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18896d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18906d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1891b5df2d14SHong Zhang 18926d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18936d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1894b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1895b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1896b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1897b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1898b5df2d14SHong Zhang matrices. 1899b5df2d14SHong Zhang 1900b5df2d14SHong Zhang Level: intermediate 1901b5df2d14SHong Zhang 1902b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1903b5df2d14SHong Zhang 1904b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1905b5df2d14SHong Zhang @*/ 1906be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1907b5df2d14SHong Zhang { 19081302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1909b5df2d14SHong Zhang 1910b5df2d14SHong Zhang PetscFunctionBegin; 1911a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1912a23d5eceSKris Buschelman if (f) { 1913a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1914b5df2d14SHong Zhang } 1915b5df2d14SHong Zhang PetscFunctionReturn(0); 1916b5df2d14SHong Zhang } 1917b5df2d14SHong Zhang 19184a2ae208SSatish Balay #undef __FUNCT__ 19194a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1920a30f8f8cSSatish Balay /*@C 1921a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1922a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1923a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1924a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1925a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay Collective on MPI_Comm 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay Input Parameters: 1930a30f8f8cSSatish Balay + comm - MPI communicator 1931a30f8f8cSSatish Balay . bs - size of blockk 1932a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1933a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1934a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1935a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1936a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1937a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1938a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1939a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1940a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1941a30f8f8cSSatish Balay submatrix (same for all local rows) 1942a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19436d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19446d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19456d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1946a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1947a30f8f8cSSatish Balay submatrix (same for all local rows). 1948a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1949a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1950a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1951a30f8f8cSSatish Balay 1952a30f8f8cSSatish Balay Output Parameter: 1953a30f8f8cSSatish Balay . A - the matrix 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay Options Database Keys: 1956a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1957a30f8f8cSSatish Balay block calculations (much slower) 1958a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1959a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1960a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1961a30f8f8cSSatish Balay 1962175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1963ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1964175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1965175b88e8SBarry Smith 1966a30f8f8cSSatish Balay Notes: 1967d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19686d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1969d1be2dadSMatthew Knepley 1970a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1971a30f8f8cSSatish Balay (possibly both). 1972a30f8f8cSSatish Balay 1973a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1974a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1975a30f8f8cSSatish Balay 197649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 197749a6f317SBarry Smith 1978a30f8f8cSSatish Balay Storage Information: 1979a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1980a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1981a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1982a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1983a30f8f8cSSatish Balay 1984a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1985a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1986a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1987a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1988a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1989a30f8f8cSSatish Balay 1990a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1991a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1992a30f8f8cSSatish Balay 1993a30f8f8cSSatish Balay .vb 1994a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1995a30f8f8cSSatish Balay ------------------- 1996a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1997a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1998a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1999a30f8f8cSSatish Balay ------------------- 2000a30f8f8cSSatish Balay .ve 2001a30f8f8cSSatish Balay 2002a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2003a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20046d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20056d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2006a30f8f8cSSatish Balay 20076d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20086d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2009a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2010a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2011a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2012a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2013a30f8f8cSSatish Balay matrices. 2014a30f8f8cSSatish Balay 2015a30f8f8cSSatish Balay Level: intermediate 2016a30f8f8cSSatish Balay 2017a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2018a30f8f8cSSatish Balay 2019a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2020a30f8f8cSSatish Balay @*/ 2021a30f8f8cSSatish Balay 2022be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2023a30f8f8cSSatish Balay { 20246849ba73SBarry Smith PetscErrorCode ierr; 20251302d50aSBarry Smith PetscMPIInt size; 2026a30f8f8cSSatish Balay 2027a30f8f8cSSatish Balay PetscFunctionBegin; 2028f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2029f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2030273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2031273d9f13SBarry Smith if (size > 1) { 2032b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2033b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2034273d9f13SBarry Smith } else { 2035273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2036273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2037273d9f13SBarry Smith } 2038a30f8f8cSSatish Balay PetscFunctionReturn(0); 2039a30f8f8cSSatish Balay } 2040a30f8f8cSSatish Balay 2041a30f8f8cSSatish Balay 20424a2ae208SSatish Balay #undef __FUNCT__ 20434a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2045a30f8f8cSSatish Balay { 2046a30f8f8cSSatish Balay Mat mat; 2047a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2048dfbe8321SBarry Smith PetscErrorCode ierr; 2049d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2050387bc808SHong Zhang PetscScalar *array; 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay PetscFunctionBegin; 2053a30f8f8cSSatish Balay *newmat = 0; 20547adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2055d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20567adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20571d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 205826283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 205926283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2060e1b6402fSHong Zhang 2061d5f3da31SBarry Smith mat->factortype = matin->factortype; 2062273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20647fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20657fff6886SHong Zhang 2066b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2067a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2068a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2069a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2070a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2071a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2072a30f8f8cSSatish Balay 2073899cda47SBarry Smith 2074a30f8f8cSSatish Balay a->size = oldmat->size; 2075a30f8f8cSSatish Balay a->rank = oldmat->rank; 2076a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2077a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2078a30f8f8cSSatish Balay a->rowindices = 0; 2079a30f8f8cSSatish Balay a->rowvalues = 0; 2080a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2081a30f8f8cSSatish Balay a->barray = 0; 2082899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2083899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2084899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2085899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2086a30f8f8cSSatish Balay 2087a30f8f8cSSatish Balay /* hash table stuff */ 2088a30f8f8cSSatish Balay a->ht = 0; 2089a30f8f8cSSatish Balay a->hd = 0; 2090a30f8f8cSSatish Balay a->ht_size = 0; 2091a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2092a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2093a30f8f8cSSatish Balay a->ht_total_ct = 0; 2094a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2095a30f8f8cSSatish Balay 2096899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2097a30f8f8cSSatish Balay if (oldmat->colmap) { 2098a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2099a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2100a30f8f8cSSatish Balay #else 21011302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21031302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2104a30f8f8cSSatish Balay #endif 2105a30f8f8cSSatish Balay } else a->colmap = 0; 2106387bc808SHong Zhang 2107a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21081302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 210952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21101302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2111a30f8f8cSSatish Balay } else a->garray = 0; 2112a30f8f8cSSatish Balay 2113533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2114a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 211552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2116a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 211752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 211882327fa8SHong Zhang 211982327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212182327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2123387bc808SHong Zhang 2124387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21251ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2126387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2127387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21281ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21291ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2130387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 213552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2137387bc808SHong Zhang 2138387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2139387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2140387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214282327fa8SHong Zhang 2143a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2145a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21477adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2148a30f8f8cSSatish Balay *newmat = mat; 2149a30f8f8cSSatish Balay PetscFunctionReturn(0); 2150a30f8f8cSSatish Balay } 2151a30f8f8cSSatish Balay 21524a2ae208SSatish Balay #undef __FUNCT__ 21534a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2154a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2155a30f8f8cSSatish Balay { 2156a30f8f8cSSatish Balay Mat A; 21576849ba73SBarry Smith PetscErrorCode ierr; 215813f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 215987828ca2SBarry Smith PetscScalar *vals,*buf; 2160a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2161a30f8f8cSSatish Balay MPI_Status status; 2162e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 216313f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21642fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21651302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21661302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21671302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 216813f74950SBarry Smith int fd; 2169a30f8f8cSSatish Balay 2170a30f8f8cSSatish Balay PetscFunctionBegin; 217177925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21728c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21738c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2176a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay if (!rank) { 2178b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2180e32f2f54SBarry Smith if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2181e7e72b3dSBarry Smith if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2182a30f8f8cSSatish Balay } 2183a30f8f8cSSatish Balay 2184a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2185a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2186a30f8f8cSSatish Balay 2187e32f2f54SBarry Smith if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 2188a30f8f8cSSatish Balay 2189a30f8f8cSSatish Balay /* 2190a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2191a30f8f8cSSatish Balay divisible by the blocksize 2192a30f8f8cSSatish Balay */ 2193a30f8f8cSSatish Balay Mbs = M/bs; 2194a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2195a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2196a30f8f8cSSatish Balay else Mbs++; 2197a30f8f8cSSatish Balay if (extra_rows &&!rank) { 21981e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2199a30f8f8cSSatish Balay } 2200a30f8f8cSSatish Balay 2201a30f8f8cSSatish Balay /* determine ownership of all rows */ 2202a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2203a30f8f8cSSatish Balay m = mbs*bs; 220474ed9c26SBarry Smith ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 2205e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2206e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay rowners[0] = 0; 2208a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2209a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2210a30f8f8cSSatish Balay rstart = rowners[rank]; 2211a30f8f8cSSatish Balay rend = rowners[rank+1]; 2212a30f8f8cSSatish Balay 2213a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22142fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay if (!rank) { 22161302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2217a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2219a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2220a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2221a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2223a30f8f8cSSatish Balay } else { 2224a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay } 2226a30f8f8cSSatish Balay 22270222edb1SHong Zhang if (!rank) { /* procs[0] */ 2228a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22291302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22301302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2231a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2232a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2233a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2234a30f8f8cSSatish Balay } 2235a30f8f8cSSatish Balay } 2236a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2237a30f8f8cSSatish Balay 2238a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2239a30f8f8cSSatish Balay maxnz = 0; 2240a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2241a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2242a30f8f8cSSatish Balay } 22431302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay 2245a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2246a30f8f8cSSatish Balay nz = procsnz[0]; 22471302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2248a30f8f8cSSatish Balay mycols = ibuf; 2249a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2250a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2254a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2255a30f8f8cSSatish Balay nz = procsnz[i]; 2256a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2257a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay } 2259a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2260a30f8f8cSSatish Balay if (size != 1) { 2261a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2262a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2263a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2264a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay } 2266a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22670222edb1SHong Zhang } else { /* procs[i], i>0 */ 2268a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2269a30f8f8cSSatish Balay nz = 0; 2270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2271a30f8f8cSSatish Balay nz += locrowlens[i]; 2272a30f8f8cSSatish Balay } 22731302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay mycols = ibuf; 2275a30f8f8cSSatish Balay /* receive message of column indices*/ 2276a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2277a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 2278e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2279a30f8f8cSSatish Balay } 2280a30f8f8cSSatish Balay 2281a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 228274ed9c26SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 228374ed9c26SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 228474ed9c26SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 228574ed9c26SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 228674ed9c26SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 228774ed9c26SBarry Smith rowcount = 0; 228874ed9c26SBarry Smith nzcount = 0; 2289a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2290a30f8f8cSSatish Balay dcount = 0; 2291a30f8f8cSSatish Balay odcount = 0; 2292a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2293a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2294a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22950222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2296a30f8f8cSSatish Balay if (!mask[tmp]) { 2297a30f8f8cSSatish Balay mask[tmp] = 1; 22980222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22990222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2300a30f8f8cSSatish Balay } 2301a30f8f8cSSatish Balay } 2302a30f8f8cSSatish Balay rowcount++; 2303a30f8f8cSSatish Balay } 2304a30f8f8cSSatish Balay 23050222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23060222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2309a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2310a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2311a30f8f8cSSatish Balay } 2312a30f8f8cSSatish Balay 2313a30f8f8cSSatish Balay /* create our matrix */ 2314f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2315f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 231622191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 231717fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 231822191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay if (!rank) { 232187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2322a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2323a30f8f8cSSatish Balay nz = procsnz[0]; 2324a30f8f8cSSatish Balay vals = buf; 2325a30f8f8cSSatish Balay mycols = ibuf; 2326a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2327a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2328a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2329a30f8f8cSSatish Balay 2330a30f8f8cSSatish Balay /* insert into matrix */ 2331a30f8f8cSSatish Balay jj = rstart*bs; 2332a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23337e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2334a30f8f8cSSatish Balay mycols += locrowlens[i]; 2335a30f8f8cSSatish Balay vals += locrowlens[i]; 2336a30f8f8cSSatish Balay jj++; 2337a30f8f8cSSatish Balay } 23387e06b45fSHong Zhang 2339a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2340a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2341a30f8f8cSSatish Balay nz = procsnz[i]; 2342a30f8f8cSSatish Balay vals = buf; 2343a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23447adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2345a30f8f8cSSatish Balay } 2346a30f8f8cSSatish Balay /* the last proc */ 2347a30f8f8cSSatish Balay if (size != 1){ 2348a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2351a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23527adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2353a30f8f8cSSatish Balay } 2354a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23557e06b45fSHong Zhang 2356a30f8f8cSSatish Balay } else { 2357a30f8f8cSSatish Balay /* receive numeric values */ 235887828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay 2360a30f8f8cSSatish Balay /* receive message of values*/ 2361a30f8f8cSSatish Balay vals = buf; 2362a30f8f8cSSatish Balay mycols = ibuf; 23637adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2365e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay /* insert into matrix */ 2368a30f8f8cSSatish Balay jj = rstart*bs; 2369a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2370a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay mycols += locrowlens[i]; 2372a30f8f8cSSatish Balay vals += locrowlens[i]; 2373a30f8f8cSSatish Balay jj++; 2374a30f8f8cSSatish Balay } 2375a30f8f8cSSatish Balay } 23767e06b45fSHong Zhang 2377a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2379a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 238074ed9c26SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 238174ed9c26SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 238274ed9c26SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 2383a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2384a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238522191285SKris Buschelman *newmat = A; 2386a30f8f8cSSatish Balay PetscFunctionReturn(0); 2387a30f8f8cSSatish Balay } 2388a30f8f8cSSatish Balay 23894a2ae208SSatish Balay #undef __FUNCT__ 2390*95936485SShri Abhyankar #define __FUNCT__ "MatLoadnew_MPISBAIJ" 2391*95936485SShri Abhyankar PetscErrorCode MatLoadnew_MPISBAIJ(PetscViewer viewer, Mat newmat) 2392*95936485SShri Abhyankar { 2393*95936485SShri Abhyankar PetscErrorCode ierr; 2394*95936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 2395*95936485SShri Abhyankar PetscScalar *vals,*buf; 2396*95936485SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 2397*95936485SShri Abhyankar MPI_Status status; 2398*95936485SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 2399*95936485SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 2400*95936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 2401*95936485SShri Abhyankar PetscInt bs=1,Mbs,mbs,extra_rows; 2402*95936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2403*95936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 2404*95936485SShri Abhyankar int fd; 2405*95936485SShri Abhyankar 2406*95936485SShri Abhyankar PetscFunctionBegin; 2407*95936485SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 2408*95936485SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 2409*95936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 2410*95936485SShri Abhyankar 2411*95936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2412*95936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2413*95936485SShri Abhyankar if (!rank) { 2414*95936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2415*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2416*95936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2417*95936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2418*95936485SShri Abhyankar } 2419*95936485SShri Abhyankar 2420*95936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 2421*95936485SShri Abhyankar 2422*95936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2423*95936485SShri Abhyankar M = header[1]; N = header[2]; 2424*95936485SShri Abhyankar 2425*95936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 2426*95936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 2427*95936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 2428*95936485SShri Abhyankar 2429*95936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2430*95936485SShri Abhyankar if (sizesset) { 2431*95936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 2432*95936485SShri Abhyankar } 2433*95936485SShri Abhyankar if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Incostintent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2434*95936485SShri Abhyankar if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Incostintent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 2435*95936485SShri Abhyankar 2436*95936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 2437*95936485SShri Abhyankar 2438*95936485SShri Abhyankar /* 2439*95936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 2440*95936485SShri Abhyankar divisible by the blocksize 2441*95936485SShri Abhyankar */ 2442*95936485SShri Abhyankar Mbs = M/bs; 2443*95936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 2444*95936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 2445*95936485SShri Abhyankar else Mbs++; 2446*95936485SShri Abhyankar if (extra_rows &&!rank) { 2447*95936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2448*95936485SShri Abhyankar } 2449*95936485SShri Abhyankar 2450*95936485SShri Abhyankar /* determine ownership of all rows */ 2451*95936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 2452*95936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 2453*95936485SShri Abhyankar m = mbs*bs; 2454*95936485SShri Abhyankar } else { /* User Set */ 2455*95936485SShri Abhyankar m = newmat->rmap->n; 2456*95936485SShri Abhyankar mbs = m/bs; 2457*95936485SShri Abhyankar } 2458*95936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 2459*95936485SShri Abhyankar mmbs = PetscMPIIntCast(mbs); 2460*95936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2461*95936485SShri Abhyankar rowners[0] = 0; 2462*95936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2463*95936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2464*95936485SShri Abhyankar rstart = rowners[rank]; 2465*95936485SShri Abhyankar rend = rowners[rank+1]; 2466*95936485SShri Abhyankar 2467*95936485SShri Abhyankar /* distribute row lengths to all processors */ 2468*95936485SShri Abhyankar ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2469*95936485SShri Abhyankar if (!rank) { 2470*95936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2471*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2472*95936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2473*95936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2474*95936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2475*95936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2476*95936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2477*95936485SShri Abhyankar } else { 2478*95936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2479*95936485SShri Abhyankar } 2480*95936485SShri Abhyankar 2481*95936485SShri Abhyankar if (!rank) { /* procs[0] */ 2482*95936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2483*95936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2484*95936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2485*95936485SShri Abhyankar for (i=0; i<size; i++) { 2486*95936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2487*95936485SShri Abhyankar procsnz[i] += rowlengths[j]; 2488*95936485SShri Abhyankar } 2489*95936485SShri Abhyankar } 2490*95936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2491*95936485SShri Abhyankar 2492*95936485SShri Abhyankar /* determine max buffer needed and allocate it */ 2493*95936485SShri Abhyankar maxnz = 0; 2494*95936485SShri Abhyankar for (i=0; i<size; i++) { 2495*95936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 2496*95936485SShri Abhyankar } 2497*95936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2498*95936485SShri Abhyankar 2499*95936485SShri Abhyankar /* read in my part of the matrix column indices */ 2500*95936485SShri Abhyankar nz = procsnz[0]; 2501*95936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2502*95936485SShri Abhyankar mycols = ibuf; 2503*95936485SShri Abhyankar if (size == 1) nz -= extra_rows; 2504*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2505*95936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2506*95936485SShri Abhyankar 2507*95936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 2508*95936485SShri Abhyankar for (i=1; i<size-1; i++) { 2509*95936485SShri Abhyankar nz = procsnz[i]; 2510*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2511*95936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2512*95936485SShri Abhyankar } 2513*95936485SShri Abhyankar /* read in the stuff for the last proc */ 2514*95936485SShri Abhyankar if (size != 1) { 2515*95936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2516*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2517*95936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2518*95936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2519*95936485SShri Abhyankar } 2520*95936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 2521*95936485SShri Abhyankar } else { /* procs[i], i>0 */ 2522*95936485SShri Abhyankar /* determine buffer space needed for message */ 2523*95936485SShri Abhyankar nz = 0; 2524*95936485SShri Abhyankar for (i=0; i<m; i++) { 2525*95936485SShri Abhyankar nz += locrowlens[i]; 2526*95936485SShri Abhyankar } 2527*95936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2528*95936485SShri Abhyankar mycols = ibuf; 2529*95936485SShri Abhyankar /* receive message of column indices*/ 2530*95936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2531*95936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 2532*95936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2533*95936485SShri Abhyankar } 2534*95936485SShri Abhyankar 2535*95936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2536*95936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 2537*95936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 2538*95936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2539*95936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2540*95936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2541*95936485SShri Abhyankar rowcount = 0; 2542*95936485SShri Abhyankar nzcount = 0; 2543*95936485SShri Abhyankar for (i=0; i<mbs; i++) { 2544*95936485SShri Abhyankar dcount = 0; 2545*95936485SShri Abhyankar odcount = 0; 2546*95936485SShri Abhyankar for (j=0; j<bs; j++) { 2547*95936485SShri Abhyankar kmax = locrowlens[rowcount]; 2548*95936485SShri Abhyankar for (k=0; k<kmax; k++) { 2549*95936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 2550*95936485SShri Abhyankar if (!mask[tmp]) { 2551*95936485SShri Abhyankar mask[tmp] = 1; 2552*95936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 2553*95936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 2554*95936485SShri Abhyankar } 2555*95936485SShri Abhyankar } 2556*95936485SShri Abhyankar rowcount++; 2557*95936485SShri Abhyankar } 2558*95936485SShri Abhyankar 2559*95936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 2560*95936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 2561*95936485SShri Abhyankar 2562*95936485SShri Abhyankar /* zero out the mask elements we set */ 2563*95936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2564*95936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2565*95936485SShri Abhyankar } 2566*95936485SShri Abhyankar if (!sizesset) { 2567*95936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 2568*95936485SShri Abhyankar } 2569*95936485SShri Abhyankar ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2570*95936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2571*95936485SShri Abhyankar 2572*95936485SShri Abhyankar if (!rank) { 2573*95936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2574*95936485SShri Abhyankar /* read in my part of the matrix numerical values */ 2575*95936485SShri Abhyankar nz = procsnz[0]; 2576*95936485SShri Abhyankar vals = buf; 2577*95936485SShri Abhyankar mycols = ibuf; 2578*95936485SShri Abhyankar if (size == 1) nz -= extra_rows; 2579*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2580*95936485SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2581*95936485SShri Abhyankar 2582*95936485SShri Abhyankar /* insert into matrix */ 2583*95936485SShri Abhyankar jj = rstart*bs; 2584*95936485SShri Abhyankar for (i=0; i<m; i++) { 2585*95936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2586*95936485SShri Abhyankar mycols += locrowlens[i]; 2587*95936485SShri Abhyankar vals += locrowlens[i]; 2588*95936485SShri Abhyankar jj++; 2589*95936485SShri Abhyankar } 2590*95936485SShri Abhyankar 2591*95936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 2592*95936485SShri Abhyankar for (i=1; i<size-1; i++) { 2593*95936485SShri Abhyankar nz = procsnz[i]; 2594*95936485SShri Abhyankar vals = buf; 2595*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2596*95936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 2597*95936485SShri Abhyankar } 2598*95936485SShri Abhyankar /* the last proc */ 2599*95936485SShri Abhyankar if (size != 1){ 2600*95936485SShri Abhyankar nz = procsnz[i] - extra_rows; 2601*95936485SShri Abhyankar vals = buf; 2602*95936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2603*95936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2604*95936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 2605*95936485SShri Abhyankar } 2606*95936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 2607*95936485SShri Abhyankar 2608*95936485SShri Abhyankar } else { 2609*95936485SShri Abhyankar /* receive numeric values */ 2610*95936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2611*95936485SShri Abhyankar 2612*95936485SShri Abhyankar /* receive message of values*/ 2613*95936485SShri Abhyankar vals = buf; 2614*95936485SShri Abhyankar mycols = ibuf; 2615*95936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 2616*95936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2617*95936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2618*95936485SShri Abhyankar 2619*95936485SShri Abhyankar /* insert into matrix */ 2620*95936485SShri Abhyankar jj = rstart*bs; 2621*95936485SShri Abhyankar for (i=0; i<m; i++) { 2622*95936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2623*95936485SShri Abhyankar mycols += locrowlens[i]; 2624*95936485SShri Abhyankar vals += locrowlens[i]; 2625*95936485SShri Abhyankar jj++; 2626*95936485SShri Abhyankar } 2627*95936485SShri Abhyankar } 2628*95936485SShri Abhyankar 2629*95936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2630*95936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 2631*95936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 2632*95936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 2633*95936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 2634*95936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 2635*95936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2636*95936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2637*95936485SShri Abhyankar PetscFunctionReturn(0); 2638*95936485SShri Abhyankar } 2639*95936485SShri Abhyankar 2640*95936485SShri Abhyankar #undef __FUNCT__ 26414a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2642dcf5cc72SBarry Smith /*XXXXX@ 2643a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2644a30f8f8cSSatish Balay 2645a30f8f8cSSatish Balay Input Parameters: 2646a30f8f8cSSatish Balay . mat - the matrix 2647a30f8f8cSSatish Balay . fact - factor 2648a30f8f8cSSatish Balay 2649a30f8f8cSSatish Balay Collective on Mat 2650a30f8f8cSSatish Balay 2651a30f8f8cSSatish Balay Level: advanced 2652a30f8f8cSSatish Balay 2653a30f8f8cSSatish Balay Notes: 2654a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2655a30f8f8cSSatish Balay 2656a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2657a30f8f8cSSatish Balay 2658a30f8f8cSSatish Balay .seealso: MatSetOption() 2659dcf5cc72SBarry Smith @XXXXX*/ 2660dcf5cc72SBarry Smith 266124d5174aSHong Zhang 26624a2ae208SSatish Balay #undef __FUNCT__ 2663985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2664985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 266524d5174aSHong Zhang { 266624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2667f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2668ca54ac64SHong Zhang PetscReal atmp; 266987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2670dfbe8321SBarry Smith PetscErrorCode ierr; 26711302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 26721302d50aSBarry Smith PetscMPIInt rank,size; 26731302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 267487828ca2SBarry Smith PetscScalar *va; 26758a1c53f2SBarry Smith MatScalar *ba; 2676f4c0e9e4SHong Zhang MPI_Status stat; 267724d5174aSHong Zhang 267824d5174aSHong Zhang PetscFunctionBegin; 2679e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2680985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 26811ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2682f4c0e9e4SHong Zhang 26837adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 26847adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2685f4c0e9e4SHong Zhang 2686d0f46423SBarry Smith bs = A->rmap->bs; 2687f4c0e9e4SHong Zhang mbs = a->mbs; 2688f4c0e9e4SHong Zhang Mbs = a->Mbs; 2689f4c0e9e4SHong Zhang ba = b->a; 2690f4c0e9e4SHong Zhang bi = b->i; 2691f4c0e9e4SHong Zhang bj = b->j; 2692f4c0e9e4SHong Zhang 2693f4c0e9e4SHong Zhang /* find ownerships */ 2694d0f46423SBarry Smith rowners_bs = A->rmap->range; 2695f4c0e9e4SHong Zhang 2696f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 269782502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2698ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2699f4c0e9e4SHong Zhang 2700f4c0e9e4SHong Zhang /* row_max for B */ 2701b8475685SHong Zhang if (rank != size-1){ 2702f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2703f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2704f4c0e9e4SHong Zhang brow = bs*i; 2705f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2706f4c0e9e4SHong Zhang bcol = bs*(*bj); 2707f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2708ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 270904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2710f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2711f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2712ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2713ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2714f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2715f4c0e9e4SHong Zhang } 2716f4c0e9e4SHong Zhang } 2717f4c0e9e4SHong Zhang bj++; 2718f4c0e9e4SHong Zhang } 2719f4c0e9e4SHong Zhang } 2720f4c0e9e4SHong Zhang 2721f4c0e9e4SHong Zhang /* send values to its owners */ 2722f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2723f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2724ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 27257adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2726ca54ac64SHong Zhang } 2727f4c0e9e4SHong Zhang } 2728f4c0e9e4SHong Zhang 2729f4c0e9e4SHong Zhang /* receive values */ 2730ca54ac64SHong Zhang if (rank){ 2731f4c0e9e4SHong Zhang rvalues = work; 2732ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2733f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 27347adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2735f4c0e9e4SHong Zhang /* process values */ 2736f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2737ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2738f4c0e9e4SHong Zhang } 2739f4c0e9e4SHong Zhang } 2740ca54ac64SHong Zhang } 2741f4c0e9e4SHong Zhang 27421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2743ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 274424d5174aSHong Zhang PetscFunctionReturn(0); 274524d5174aSHong Zhang } 27462798e883SHong Zhang 27472798e883SHong Zhang #undef __FUNCT__ 274841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 274941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 27502798e883SHong Zhang { 27512798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2752dfbe8321SBarry Smith PetscErrorCode ierr; 2753d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 27543649974fSBarry Smith PetscScalar *x,*ptr,*from; 2755ffe4fb16SHong Zhang Vec bb1; 27563649974fSBarry Smith const PetscScalar *b; 2757ffe4fb16SHong Zhang 2758ffe4fb16SHong Zhang PetscFunctionBegin; 2759e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2760e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2761ffe4fb16SHong Zhang 2762a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 276341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2764a2b30743SBarry Smith PetscFunctionReturn(0); 2765a2b30743SBarry Smith } 2766a2b30743SBarry Smith 2767ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2768ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 276941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2770ffe4fb16SHong Zhang its--; 2771ffe4fb16SHong Zhang } 2772ffe4fb16SHong Zhang 2773ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2774ffe4fb16SHong Zhang while (its--){ 2775ffe4fb16SHong Zhang 2776ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2777ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2778ffe4fb16SHong Zhang 2779ffe4fb16SHong Zhang /* copy xx into slvec0a */ 27801ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 27811ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2782ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 27831ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2784ffe4fb16SHong Zhang 2785efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2786ffe4fb16SHong Zhang 2787ffe4fb16SHong Zhang /* copy bb into slvec1a */ 27881ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 27893649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2790ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 27911ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2792ffe4fb16SHong Zhang 2793ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2794fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2795ffe4fb16SHong Zhang 2796ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27971ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2798a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2799ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2800ffe4fb16SHong Zhang 2801ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2802ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2803ffe4fb16SHong Zhang 2804ffe4fb16SHong Zhang /* local diagonal sweep */ 280541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2806ffe4fb16SHong Zhang } 2807ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2808fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 280941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2810fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 281141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2812fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2813fa22f6d0SBarry Smith Vec xx1; 2814fa22f6d0SBarry Smith PetscTruth hasop; 281520f1ed55SBarry Smith const PetscScalar *diag; 2816887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 281720f1ed55SBarry Smith PetscInt i,n; 2818fa22f6d0SBarry Smith 2819fa22f6d0SBarry Smith if (!mat->xx1) { 2820fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2821fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2822fa22f6d0SBarry Smith } 2823fa22f6d0SBarry Smith xx1 = mat->xx1; 2824fa22f6d0SBarry Smith bb1 = mat->bb1; 2825fa22f6d0SBarry Smith 282641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2827fa22f6d0SBarry Smith 2828fa22f6d0SBarry Smith if (!mat->diag) { 2829effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2830fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2831fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2832fa22f6d0SBarry Smith } 2833fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2834fa22f6d0SBarry Smith 2835fa22f6d0SBarry Smith if (hasop) { 2836fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2837887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 283820f1ed55SBarry Smith } else { 283920f1ed55SBarry Smith /* 284020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 284120f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2842887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 284320f1ed55SBarry Smith */ 284420f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 28453649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 28463649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 284720f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 284820f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2849887ee2caSBarry Smith if (omega == 1.0) { 285020f1ed55SBarry Smith for (i=0; i<n; i++) { 285120f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 285220f1ed55SBarry Smith } 285320f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2854887ee2caSBarry Smith } else { 2855887ee2caSBarry Smith for (i=0; i<n; i++) { 2856887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2857887ee2caSBarry Smith } 2858887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2859887ee2caSBarry Smith } 286020f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 28613649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 28623649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 286320f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 286420f1ed55SBarry Smith } 2865fa22f6d0SBarry Smith 2866fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2867fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2868fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2869fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2870fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2871fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2872fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2873fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2874fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2875fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2876effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2877fa22f6d0SBarry Smith 2878fa22f6d0SBarry Smith /* local sweep */ 287941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2880fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2881ffe4fb16SHong Zhang } else { 2882e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2883ffe4fb16SHong Zhang } 2884ffe4fb16SHong Zhang PetscFunctionReturn(0); 2885ffe4fb16SHong Zhang } 2886ffe4fb16SHong Zhang 2887ffe4fb16SHong Zhang #undef __FUNCT__ 288841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 288941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2890ffe4fb16SHong Zhang { 2891ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2892dfbe8321SBarry Smith PetscErrorCode ierr; 28932798e883SHong Zhang Vec lvec1,bb1; 28942798e883SHong Zhang 28952798e883SHong Zhang PetscFunctionBegin; 2896e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2897e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 28982798e883SHong Zhang 2899c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 29002798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 290141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 29022798e883SHong Zhang its--; 29032798e883SHong Zhang } 29042798e883SHong Zhang 29052798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 29062798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 29072798e883SHong Zhang while (its--){ 2908ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 29092798e883SHong Zhang 29102798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 29112798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2912efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 29132798e883SHong Zhang 2914ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 29152798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2916ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 29172798e883SHong Zhang 29182798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2919efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 29202798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 29212798e883SHong Zhang 2922ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 29232798e883SHong Zhang 2924c14dc6b6SHong Zhang /* diagonal sweep */ 292541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 29262798e883SHong Zhang } 29272798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 29282798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2929c14dc6b6SHong Zhang } else { 2930e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2931c14dc6b6SHong Zhang } 29322798e883SHong Zhang PetscFunctionReturn(0); 29332798e883SHong Zhang } 29342798e883SHong Zhang 2935