xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision 9593648588f11667daf81aee9b2d915065775b8a)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6f3da1532SBarry Smith #include "petscblaslapack.h"
7a30f8f8cSSatish Balay 
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay EXTERN_C_BEGIN
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
28a30f8f8cSSatish Balay {
29f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
30dfbe8321SBarry Smith   PetscErrorCode ierr;
31a30f8f8cSSatish Balay 
32a30f8f8cSSatish Balay   PetscFunctionBegin;
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   PetscFunctionReturn(0);
36a30f8f8cSSatish Balay }
37a30f8f8cSSatish Balay EXTERN_C_END
38a30f8f8cSSatish Balay 
39a30f8f8cSSatish Balay EXTERN_C_BEGIN
404a2ae208SSatish Balay #undef __FUNCT__
414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
43a30f8f8cSSatish Balay {
44f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
45dfbe8321SBarry Smith   PetscErrorCode ierr;
46a30f8f8cSSatish Balay 
47a30f8f8cSSatish Balay   PetscFunctionBegin;
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
50a30f8f8cSSatish Balay   PetscFunctionReturn(0);
51a30f8f8cSSatish Balay }
52a30f8f8cSSatish Balay EXTERN_C_END
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay 
55a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
56a30f8f8cSSatish Balay { \
57a30f8f8cSSatish Balay  \
58a30f8f8cSSatish Balay     brow = row/bs;  \
59a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
60a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
61a30f8f8cSSatish Balay       bcol = col/bs; \
62a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
63a30f8f8cSSatish Balay       low = 0; high = nrow; \
64a30f8f8cSSatish Balay       while (high-low > 3) { \
65a30f8f8cSSatish Balay         t = (low+high)/2; \
66a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
67a30f8f8cSSatish Balay         else              low  = t; \
68a30f8f8cSSatish Balay       } \
69a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
70a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
71a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
72a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
73a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
74a30f8f8cSSatish Balay           else                    *bap  = value;  \
75a30f8f8cSSatish Balay           goto a_noinsert; \
76a30f8f8cSSatish Balay         } \
77a30f8f8cSSatish Balay       } \
78a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
79e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
80fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
81a30f8f8cSSatish Balay       N = nrow++ - 1;  \
82a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
83a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
84a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
85a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
86a30f8f8cSSatish Balay       } \
87a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
88a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
89a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
90a30f8f8cSSatish Balay       a_noinsert:; \
91a30f8f8cSSatish Balay     ailen[brow] = nrow; \
92a30f8f8cSSatish Balay }
93e5e170daSBarry Smith 
94a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
95a30f8f8cSSatish Balay { \
96a30f8f8cSSatish Balay     brow = row/bs;  \
97a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
98a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
99a30f8f8cSSatish Balay       bcol = col/bs; \
100a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
101a30f8f8cSSatish Balay       low = 0; high = nrow; \
102a30f8f8cSSatish Balay       while (high-low > 3) { \
103a30f8f8cSSatish Balay         t = (low+high)/2; \
104a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
105a30f8f8cSSatish Balay         else              low  = t; \
106a30f8f8cSSatish Balay       } \
107a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
108a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
109a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
110a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
111a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
112a30f8f8cSSatish Balay           else                    *bap  = value;  \
113a30f8f8cSSatish Balay           goto b_noinsert; \
114a30f8f8cSSatish Balay         } \
115a30f8f8cSSatish Balay       } \
116a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
117e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
118fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
119a30f8f8cSSatish Balay       N = nrow++ - 1;  \
120a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
121a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
122a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
124a30f8f8cSSatish Balay       } \
125a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
126a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
127a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
128a30f8f8cSSatish Balay       b_noinsert:; \
129a30f8f8cSSatish Balay     bilen[brow] = nrow; \
130a30f8f8cSSatish Balay }
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
133a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
134a30f8f8cSSatish Balay */
1354a2ae208SSatish Balay #undef __FUNCT__
136dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
137dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
138a30f8f8cSSatish Balay {
139a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
140a30f8f8cSSatish Balay   MatScalar      value;
141b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
142dfbe8321SBarry Smith   PetscErrorCode ierr;
1431302d50aSBarry Smith   PetscInt       i,j,row,col;
144d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
145d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
146d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
147a30f8f8cSSatish Balay 
148a30f8f8cSSatish Balay   /* Some Variables required in the macro */
149a30f8f8cSSatish Balay   Mat            A = baij->A;
150a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1511302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
152a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
153a30f8f8cSSatish Balay 
154a30f8f8cSSatish Balay   Mat            B = baij->B;
155a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1561302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
157a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
158a30f8f8cSSatish Balay 
1591302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1601302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
161a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
162a30f8f8cSSatish Balay 
163a30f8f8cSSatish Balay   /* for stash */
164910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
165910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
166a30f8f8cSSatish Balay 
167a30f8f8cSSatish Balay   PetscFunctionBegin;
16871fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
169a30f8f8cSSatish Balay   if (!baij->donotstash){
17059ffdab8SBarry Smith     if (n > baij->n_loc) {
17159ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       baij->n_loc = n;
17659ffdab8SBarry Smith     }
17759ffdab8SBarry Smith     in_loc = baij->in_loc;
17859ffdab8SBarry Smith     v_loc  = baij->v_loc;
179a30f8f8cSSatish Balay   }
180a30f8f8cSSatish Balay 
181a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
182a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
184e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
185a30f8f8cSSatish Balay #endif
186a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
187a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
188a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18901b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19001b2bd88SHong Zhang           if (a->ignore_ltriangular){
19101b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19201b2bd88SHong Zhang           } else {
193e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19401b2bd88SHong Zhang           }
19501b2bd88SHong Zhang         }
196a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
197a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
198a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
199a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
200a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
201a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
202a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
203a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
205cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
206a30f8f8cSSatish Balay #endif
207a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
208a30f8f8cSSatish Balay           if (mat->was_assembled) {
209a30f8f8cSSatish Balay             if (!baij->colmap) {
210653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
211a30f8f8cSSatish Balay             }
212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
213a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21471730473SSatish Balay             col  = col - 1;
215a30f8f8cSSatish Balay #else
21671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
217a30f8f8cSSatish Balay #endif
218a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
219a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
220a30f8f8cSSatish Balay               col =  in[j];
221a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
222a30f8f8cSSatish Balay               B = baij->B;
223a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
224a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
225a30f8f8cSSatish Balay               ba=b->a;
22671730473SSatish Balay             } else col += in[j]%bs;
227a30f8f8cSSatish Balay           } else col = in[j];
228a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
230a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
231a30f8f8cSSatish Balay         }
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     } else {  /* off processor entry */
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
235a30f8f8cSSatish Balay         n_loc = 0;
236a30f8f8cSSatish Balay         for (j=0; j<n; j++){
237f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
238a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
239a30f8f8cSSatish Balay           if (roworiented) {
240a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
241a30f8f8cSSatish Balay           } else {
242a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
243a30f8f8cSSatish Balay           }
244a30f8f8cSSatish Balay           n_loc++;
245a30f8f8cSSatish Balay         }
246b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
247a30f8f8cSSatish Balay       }
248a30f8f8cSSatish Balay     }
249a30f8f8cSSatish Balay   }
250a30f8f8cSSatish Balay   PetscFunctionReturn(0);
251a30f8f8cSSatish Balay }
252a30f8f8cSSatish Balay 
2534a2ae208SSatish Balay #undef __FUNCT__
254dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
255dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
256a30f8f8cSSatish Balay {
2570880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
258f15d580aSBarry Smith   const MatScalar *value;
259f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
260f3f98c53SJed Brown   PetscTruth      roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
261dfbe8321SBarry Smith   PetscErrorCode  ierr;
262899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
263899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
264d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2650880e062SHong Zhang 
266a30f8f8cSSatish Balay   PetscFunctionBegin;
2670880e062SHong Zhang   if(!barray) {
2680880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2690880e062SHong Zhang     baij->barray = barray;
2700880e062SHong Zhang   }
2710880e062SHong Zhang 
2720880e062SHong Zhang   if (roworiented) {
2730880e062SHong Zhang     stepval = (n-1)*bs;
2740880e062SHong Zhang   } else {
2750880e062SHong Zhang     stepval = (m-1)*bs;
2760880e062SHong Zhang   }
2770880e062SHong Zhang   for (i=0; i<m; i++) {
2780880e062SHong Zhang     if (im[i] < 0) continue;
2792515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
280e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2810880e062SHong Zhang #endif
2820880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2830880e062SHong Zhang       row = im[i] - rstart;
2840880e062SHong Zhang       for (j=0; j<n; j++) {
285f3f98c53SJed Brown         if (im[i] > in[j]) {
286f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
287e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
288f3f98c53SJed Brown         }
2890880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2900880e062SHong Zhang         if ((roworiented) && (n == 1)) {
291f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2920880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
293f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2940880e062SHong Zhang         } else { /* Here a copy is required */
2950880e062SHong Zhang           if (roworiented) {
2960880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2970880e062SHong Zhang           } else {
2980880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2990880e062SHong Zhang           }
3000880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3010880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3020880e062SHong Zhang               *barray++  = *value++;
3030880e062SHong Zhang             }
3040880e062SHong Zhang           }
3050880e062SHong Zhang           barray -=bs2;
3060880e062SHong Zhang         }
3070880e062SHong Zhang 
3080880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3090880e062SHong Zhang           col  = in[j] - cstart;
3100880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3110880e062SHong Zhang         }
3120880e062SHong Zhang         else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3330880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3390880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col =  in[j];
3410880e062SHong Zhang             }
3420880e062SHong Zhang           }
3430880e062SHong Zhang           else col = in[j];
344e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3450880e062SHong Zhang         }
3460880e062SHong Zhang       }
3470880e062SHong Zhang     } else {
3480880e062SHong Zhang       if (!baij->donotstash) {
3490880e062SHong Zhang         if (roworiented) {
3500880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3510880e062SHong Zhang         } else {
3520880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         }
3540880e062SHong Zhang       }
3550880e062SHong Zhang     }
3560880e062SHong Zhang   }
3570880e062SHong Zhang   PetscFunctionReturn(0);
358a30f8f8cSSatish Balay }
359a30f8f8cSSatish Balay 
3604a2ae208SSatish Balay #undef __FUNCT__
3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
363a30f8f8cSSatish Balay {
364f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3656849ba73SBarry Smith   PetscErrorCode ierr;
366d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
367d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
368a30f8f8cSSatish Balay 
369a30f8f8cSSatish Balay   PetscFunctionBegin;
370a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
371e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
372e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
373a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
374a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
375a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
376e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
377e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
378a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
379a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
380c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
381a30f8f8cSSatish Balay         } else {
382a30f8f8cSSatish Balay           if (!baij->colmap) {
383653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           }
385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
387a30f8f8cSSatish Balay           data --;
388a30f8f8cSSatish Balay #else
389a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
392a30f8f8cSSatish Balay           else {
393a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
394e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
395a30f8f8cSSatish Balay           }
396a30f8f8cSSatish Balay         }
397a30f8f8cSSatish Balay       }
398a30f8f8cSSatish Balay     } else {
399e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
400a30f8f8cSSatish Balay     }
401a30f8f8cSSatish Balay   }
402a30f8f8cSSatish Balay  PetscFunctionReturn(0);
403a30f8f8cSSatish Balay }
404a30f8f8cSSatish Balay 
4054a2ae208SSatish Balay #undef __FUNCT__
4064a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
407dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
408a30f8f8cSSatish Balay {
409a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
410dfbe8321SBarry Smith   PetscErrorCode ierr;
411a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
412a30f8f8cSSatish Balay 
413a30f8f8cSSatish Balay   PetscFunctionBegin;
414a30f8f8cSSatish Balay   if (baij->size == 1) {
415a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
416a30f8f8cSSatish Balay   } else {
417a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
418f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4237adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
425a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4260b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4270b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4280b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4290b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
430899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
431d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4320b8dc8d2SHong Zhang       MatScalar    *v;
4330b8dc8d2SHong Zhang 
43474ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
435d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4360b8dc8d2SHong Zhang       /* Amat */
4370b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4380b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4390b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4400b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4410b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4420b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4430b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4440b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4450b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4460b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4470b8dc8d2SHong Zhang               /* non-diagonal block */
4480b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4490b8dc8d2SHong Zhang             }
4500b8dc8d2SHong Zhang           }
4510b8dc8d2SHong Zhang         }
4520b8dc8d2SHong Zhang       }
4530b8dc8d2SHong Zhang       /* Bmat */
4540b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4550b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4560b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4570b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4580b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4590b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4600b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4610b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4620b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4630b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4640b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4650b8dc8d2SHong Zhang             }
4660b8dc8d2SHong Zhang           }
4670b8dc8d2SHong Zhang         }
4680b8dc8d2SHong Zhang       }
469d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4700b8dc8d2SHong Zhang       *norm = 0.0;
471d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4720b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4730b8dc8d2SHong Zhang       }
47474ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
475a30f8f8cSSatish Balay     } else {
476e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
477a30f8f8cSSatish Balay     }
478a30f8f8cSSatish Balay   }
479a30f8f8cSSatish Balay   PetscFunctionReturn(0);
480a30f8f8cSSatish Balay }
481a30f8f8cSSatish Balay 
4824a2ae208SSatish Balay #undef __FUNCT__
4834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
484dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
485a30f8f8cSSatish Balay {
486a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
487dfbe8321SBarry Smith   PetscErrorCode ierr;
4881302d50aSBarry Smith   PetscInt       nstash,reallocs;
489a30f8f8cSSatish Balay   InsertMode     addv;
490a30f8f8cSSatish Balay 
491a30f8f8cSSatish Balay   PetscFunctionBegin;
492a30f8f8cSSatish Balay   if (baij->donotstash) {
493a30f8f8cSSatish Balay     PetscFunctionReturn(0);
494a30f8f8cSSatish Balay   }
495a30f8f8cSSatish Balay 
496a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4977adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
498e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
499a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
500a30f8f8cSSatish Balay 
501d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5021e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
503a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   PetscFunctionReturn(0);
508a30f8f8cSSatish Balay }
509a30f8f8cSSatish Balay 
5104a2ae208SSatish Balay #undef __FUNCT__
5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
513a30f8f8cSSatish Balay {
514a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
515a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5166849ba73SBarry Smith   PetscErrorCode ierr;
51713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
518e44c0bd4SBarry Smith   PetscInt       *row,*col;
519e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52013f74950SBarry Smith   PetscMPIInt    n;
521a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
522a30f8f8cSSatish Balay   MatScalar      *val;
523a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
524a30f8f8cSSatish Balay 
52591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
526a30f8f8cSSatish Balay   PetscFunctionBegin;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay   if (!baij->donotstash) {
529a30f8f8cSSatish Balay     while (1) {
530a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       if (!flg) break;
532a30f8f8cSSatish Balay 
533a30f8f8cSSatish Balay       for (i=0; i<n;) {
534a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
535a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
536a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
537a30f8f8cSSatish Balay         else       ncols = n-i;
538a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
539dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
540a30f8f8cSSatish Balay         i = j;
541a30f8f8cSSatish Balay       }
542a30f8f8cSSatish Balay     }
543a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
545a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
546a30f8f8cSSatish Balay        restore the original flags */
547a30f8f8cSSatish Balay     r1 = baij->roworiented;
548a30f8f8cSSatish Balay     r2 = a->roworiented;
54991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
550a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
551a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
553a30f8f8cSSatish Balay     while (1) {
554a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       if (!flg) break;
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay       for (i=0; i<n;) {
558a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
559a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
560a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
561a30f8f8cSSatish Balay         else       ncols = n-i;
562dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
563a30f8f8cSSatish Balay         i = j;
564a30f8f8cSSatish Balay       }
565a30f8f8cSSatish Balay     }
566a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
576a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
577a30f8f8cSSatish Balay   /*
578a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
579a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
580a30f8f8cSSatish Balay   */
581a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5827adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
584c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     }
586a30f8f8cSSatish Balay   }
587a30f8f8cSSatish Balay 
588a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
590a30f8f8cSSatish Balay   }
59191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
59574ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   baij->rowvalues = 0;
5975222a1afSHong Zhang 
598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
599a30f8f8cSSatish Balay }
600a30f8f8cSSatish Balay 
601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
605a30f8f8cSSatish Balay {
606a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
607dfbe8321SBarry Smith   PetscErrorCode    ierr;
608d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6091302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
611b0a32e0cSBarry Smith   PetscViewer       sviewer;
612f3ef73ceSBarry Smith   PetscViewerFormat format;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
6152692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
6162692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61732077d6dSBarry Smith   if (iascii) {
618b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
619456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
620a30f8f8cSSatish Balay       MatInfo info;
6217adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
624d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
625d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       PetscFunctionReturn(0);
634fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
638c1490034SHong Zhang       PetscFunctionReturn(0);
639a30f8f8cSSatish Balay     }
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   if (isdraw) {
643b0a32e0cSBarry Smith     PetscDraw  draw;
644a30f8f8cSSatish Balay     PetscTruth isnull;
645b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
646b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   if (size == 1) {
6507adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
652a30f8f8cSSatish Balay   } else {
653a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
654a30f8f8cSSatish Balay     Mat          A;
65565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
657d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
658a30f8f8cSSatish Balay     MatScalar    *a;
659a30f8f8cSSatish Balay 
660f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6617adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     if (!rank) {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     } else {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     }
667f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
668d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay     /* copy over the A part */
67265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
673a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6741302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
677e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
678a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
679a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
680e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
681a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
682dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
683a30f8f8cSSatish Balay           col++; a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
693a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
698a30f8f8cSSatish Balay           col++; a += bs;
699a30f8f8cSSatish Balay         }
700a30f8f8cSSatish Balay       }
701a30f8f8cSSatish Balay     }
702a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     /*
706a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
707b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
708a30f8f8cSSatish Balay     */
709b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71065d70643SHong Zhang     if (!rank) {
7117adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     }
714b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay   PetscFunctionReturn(0);
718a30f8f8cSSatish Balay }
719a30f8f8cSSatish Balay 
7204a2ae208SSatish Balay #undef __FUNCT__
7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
723a30f8f8cSSatish Balay {
724dfbe8321SBarry Smith   PetscErrorCode ierr;
72532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   PetscFunctionBegin;
7282692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
7292692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7302692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
7312692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
733a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   } else {
735e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay   PetscFunctionReturn(0);
738a30f8f8cSSatish Balay }
739a30f8f8cSSatish Balay 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
743a30f8f8cSSatish Balay {
744a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   PetscFunctionBegin;
748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
749d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
750a30f8f8cSSatish Balay #endif
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7569c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #else
75805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
761a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
762a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76340781036SHong Zhang   if (baij->slvec0) {
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76640781036SHong Zhang   }
76740781036SHong Zhang   if (baij->slvec1) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77140781036SHong Zhang   }
77240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
7735755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
776fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
778fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
77965460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
781a30f8f8cSSatish Balay #endif
78259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
784899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
786901853e0SKris Buschelman 
787dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
793a30f8f8cSSatish Balay }
794a30f8f8cSSatish Balay 
7954a2ae208SSatish Balay #undef __FUNCT__
796547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
797547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
798547795f9SHong Zhang {
799547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
800547795f9SHong Zhang   PetscErrorCode ierr;
801547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
802547795f9SHong Zhang   PetscScalar    *x,*from;
803547795f9SHong Zhang 
804547795f9SHong Zhang   PetscFunctionBegin;
805547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
806e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
807547795f9SHong Zhang 
808547795f9SHong Zhang   /* diagonal part */
809547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
810547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
811547795f9SHong Zhang 
812547795f9SHong Zhang   /* subdiagonal part */
813547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
814547795f9SHong Zhang 
815547795f9SHong Zhang   /* copy x into the vec slvec0 */
816547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
817547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
818547795f9SHong Zhang 
819547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
820547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
821547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
822547795f9SHong Zhang 
823547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
824547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
825547795f9SHong Zhang   /* supperdiagonal part */
826547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
827547795f9SHong Zhang   PetscFunctionReturn(0);
828547795f9SHong Zhang }
829547795f9SHong Zhang 
830547795f9SHong Zhang #undef __FUNCT__
831a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
832dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
833a9d4b620SHong Zhang {
834a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
835dfbe8321SBarry Smith   PetscErrorCode ierr;
836d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
837fa22f6d0SBarry Smith   PetscScalar    *x,*from;
838a9d4b620SHong Zhang 
839a9d4b620SHong Zhang   PetscFunctionBegin;
840a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
841e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
842a9d4b620SHong Zhang 
843a9d4b620SHong Zhang   /* diagonal part */
844a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
845fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
846a9d4b620SHong Zhang 
847a9d4b620SHong Zhang   /* subdiagonal part */
848a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
849fc165ae2SBarry Smith 
850a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8511ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8521ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
853a9d4b620SHong Zhang 
854fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
855fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8561ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
857fc165ae2SBarry Smith 
858fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
859ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
860a9d4b620SHong Zhang   /* supperdiagonal part */
861a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
862a9d4b620SHong Zhang   PetscFunctionReturn(0);
863a9d4b620SHong Zhang }
864a9d4b620SHong Zhang 
865a9d4b620SHong Zhang #undef __FUNCT__
86640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
867dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
868a30f8f8cSSatish Balay {
869a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
870dfbe8321SBarry Smith   PetscErrorCode ierr;
8711302d50aSBarry Smith   PetscInt       nt;
872a30f8f8cSSatish Balay 
873a30f8f8cSSatish Balay   PetscFunctionBegin;
874a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
875e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
876e7e72b3dSBarry Smith 
877a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
878e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
87965d70643SHong Zhang 
880ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
881b941877fSHong Zhang   /* do diagonal part */
882b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
883b941877fSHong Zhang   /* do supperdiagonal part */
884ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
885b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
886b941877fSHong Zhang   /* do subdiagonal part */
887b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
888ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
889ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89065d70643SHong Zhang 
891a30f8f8cSSatish Balay   PetscFunctionReturn(0);
892a30f8f8cSSatish Balay }
893a30f8f8cSSatish Balay 
8944a2ae208SSatish Balay #undef __FUNCT__
8954a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
896dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
897a30f8f8cSSatish Balay {
898de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
899dfbe8321SBarry Smith   PetscErrorCode ierr;
900d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
901a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
902a9d4b620SHong Zhang 
903a9d4b620SHong Zhang   PetscFunctionBegin;
904a9d4b620SHong Zhang   /*
9057adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9067adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
907a9d4b620SHong Zhang   */
908a9d4b620SHong Zhang   /* diagonal part */
909a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9102dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
911a9d4b620SHong Zhang 
912a9d4b620SHong Zhang   /* subdiagonal part */
913a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
914a9d4b620SHong Zhang 
915a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9161ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9171ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
918a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9191ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
920a9d4b620SHong Zhang 
921ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9221ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
923ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
924a9d4b620SHong Zhang 
925a9d4b620SHong Zhang   /* supperdiagonal part */
926a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
927a9d4b620SHong Zhang 
928a9d4b620SHong Zhang   PetscFunctionReturn(0);
929a9d4b620SHong Zhang }
930a9d4b620SHong Zhang 
931a9d4b620SHong Zhang #undef __FUNCT__
932a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
933dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
934a9d4b620SHong Zhang {
935a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
936dfbe8321SBarry Smith   PetscErrorCode ierr;
937a30f8f8cSSatish Balay 
938a30f8f8cSSatish Balay   PetscFunctionBegin;
939ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
940b941877fSHong Zhang   /* do diagonal part */
941b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do supperdiagonal part */
943ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
944de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
945de8b6608SHong Zhang 
946b941877fSHong Zhang   /* do subdiagonal part */
947a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
948ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
949ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
950aa482183SHong Zhang 
951a30f8f8cSSatish Balay   PetscFunctionReturn(0);
952a30f8f8cSSatish Balay }
953a30f8f8cSSatish Balay 
954a30f8f8cSSatish Balay /*
955a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
956a30f8f8cSSatish Balay    diagonal block
957a30f8f8cSSatish Balay */
9584a2ae208SSatish Balay #undef __FUNCT__
9594a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
960dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
961a30f8f8cSSatish Balay {
962a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
963dfbe8321SBarry Smith   PetscErrorCode ierr;
964a30f8f8cSSatish Balay 
965a30f8f8cSSatish Balay   PetscFunctionBegin;
966e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
967a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
968a30f8f8cSSatish Balay   PetscFunctionReturn(0);
969a30f8f8cSSatish Balay }
970a30f8f8cSSatish Balay 
9714a2ae208SSatish Balay #undef __FUNCT__
9724a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
973f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
974a30f8f8cSSatish Balay {
975a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
976dfbe8321SBarry Smith   PetscErrorCode ierr;
977a30f8f8cSSatish Balay 
978a30f8f8cSSatish Balay   PetscFunctionBegin;
979f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
980f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
981a30f8f8cSSatish Balay   PetscFunctionReturn(0);
982a30f8f8cSSatish Balay }
983a30f8f8cSSatish Balay 
9844a2ae208SSatish Balay #undef __FUNCT__
9854a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9861302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
987a30f8f8cSSatish Balay {
988d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
989d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
990d0d4cfc2SHong Zhang   PetscErrorCode ierr;
991d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
992d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
993899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
994d0d4cfc2SHong Zhang 
995a30f8f8cSSatish Balay   PetscFunctionBegin;
996e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
997d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
998d0d4cfc2SHong Zhang 
999d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1000d0d4cfc2SHong Zhang     /*
1001d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1002d0d4cfc2SHong Zhang     */
1003d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1004d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1005d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1006d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1007d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1008d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1009d0d4cfc2SHong Zhang     }
101074ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1011d0d4cfc2SHong Zhang   }
1012d0d4cfc2SHong Zhang 
1013e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1014d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1015d0d4cfc2SHong Zhang 
1016d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1017d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1018d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1019d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1020d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1021d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1022d0d4cfc2SHong Zhang 
1023d0d4cfc2SHong Zhang   cmap  = mat->garray;
1024d0d4cfc2SHong Zhang   if (v  || idx) {
1025d0d4cfc2SHong Zhang     if (nztot) {
1026d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1027d0d4cfc2SHong Zhang       PetscInt imark = -1;
1028d0d4cfc2SHong Zhang       if (v) {
1029d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1030d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1031d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1032d0d4cfc2SHong Zhang           else break;
1033d0d4cfc2SHong Zhang         }
1034d0d4cfc2SHong Zhang         imark = i;
1035d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1036d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1037d0d4cfc2SHong Zhang       }
1038d0d4cfc2SHong Zhang       if (idx) {
1039d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1040d0d4cfc2SHong Zhang         if (imark > -1) {
1041d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1042d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1043d0d4cfc2SHong Zhang           }
1044d0d4cfc2SHong Zhang         } else {
1045d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1046d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1047d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1048d0d4cfc2SHong Zhang             else break;
1049d0d4cfc2SHong Zhang           }
1050d0d4cfc2SHong Zhang           imark = i;
1051d0d4cfc2SHong Zhang         }
1052d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1053d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1054d0d4cfc2SHong Zhang       }
1055d0d4cfc2SHong Zhang     } else {
1056d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1057d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1058d0d4cfc2SHong Zhang     }
1059d0d4cfc2SHong Zhang   }
1060d0d4cfc2SHong Zhang   *nz = nztot;
1061d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1062d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1063a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1064a30f8f8cSSatish Balay }
1065a30f8f8cSSatish Balay 
10664a2ae208SSatish Balay #undef __FUNCT__
10674a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10681302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1069a30f8f8cSSatish Balay {
1070a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1071a30f8f8cSSatish Balay 
1072a30f8f8cSSatish Balay   PetscFunctionBegin;
1073e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1074a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1075a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1076a30f8f8cSSatish Balay }
1077a30f8f8cSSatish Balay 
10784a2ae208SSatish Balay #undef __FUNCT__
1079d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1080d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1081d0d4cfc2SHong Zhang {
1082d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1083d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1084d0d4cfc2SHong Zhang 
1085d0d4cfc2SHong Zhang   PetscFunctionBegin;
1086d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1087d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1088d0d4cfc2SHong Zhang }
1089d0d4cfc2SHong Zhang #undef __FUNCT__
1090d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1091d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1092d0d4cfc2SHong Zhang {
1093d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1094d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1095d0d4cfc2SHong Zhang 
1096d0d4cfc2SHong Zhang   PetscFunctionBegin;
1097d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1098d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1099d0d4cfc2SHong Zhang }
1100d0d4cfc2SHong Zhang 
1101d0d4cfc2SHong Zhang #undef __FUNCT__
110299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110499cafbc1SBarry Smith {
110599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110699cafbc1SBarry Smith   PetscErrorCode ierr;
110799cafbc1SBarry Smith 
110899cafbc1SBarry Smith   PetscFunctionBegin;
110999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111199cafbc1SBarry Smith   PetscFunctionReturn(0);
111299cafbc1SBarry Smith }
111399cafbc1SBarry Smith 
111499cafbc1SBarry Smith #undef __FUNCT__
111599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111799cafbc1SBarry Smith {
111899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111999cafbc1SBarry Smith   PetscErrorCode ierr;
112099cafbc1SBarry Smith 
112199cafbc1SBarry Smith   PetscFunctionBegin;
112299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112499cafbc1SBarry Smith   PetscFunctionReturn(0);
112599cafbc1SBarry Smith }
112699cafbc1SBarry Smith 
112799cafbc1SBarry Smith #undef __FUNCT__
11284a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1129dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1130a30f8f8cSSatish Balay {
1131a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1132dfbe8321SBarry Smith   PetscErrorCode ierr;
1133a30f8f8cSSatish Balay 
1134a30f8f8cSSatish Balay   PetscFunctionBegin;
1135a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1136a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1138a30f8f8cSSatish Balay }
1139a30f8f8cSSatish Balay 
11404a2ae208SSatish Balay #undef __FUNCT__
11414a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1142dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1143a30f8f8cSSatish Balay {
1144a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1145a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1146dfbe8321SBarry Smith   PetscErrorCode ierr;
1147a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1148a30f8f8cSSatish Balay 
1149a30f8f8cSSatish Balay   PetscFunctionBegin;
1150d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1151a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1152a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1153a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1154a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1155a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1156a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1157a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1158a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1159a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1160a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1161a30f8f8cSSatish Balay     info->memory       = isend[3];
1162a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1163a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11647adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1165a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1166a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1167a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1168a30f8f8cSSatish Balay     info->memory       = irecv[3];
1169a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1170a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11717adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1172a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1173a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1174a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1175a30f8f8cSSatish Balay     info->memory       = irecv[3];
1176a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1177a30f8f8cSSatish Balay   } else {
1178e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1179a30f8f8cSSatish Balay   }
1180a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1181a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1182a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1183a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1184a30f8f8cSSatish Balay }
1185a30f8f8cSSatish Balay 
11864a2ae208SSatish Balay #undef __FUNCT__
11874a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11884e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1189a30f8f8cSSatish Balay {
1190a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1191d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1192dfbe8321SBarry Smith   PetscErrorCode ierr;
1193a30f8f8cSSatish Balay 
1194a30f8f8cSSatish Balay   PetscFunctionBegin;
1195e98b92d7SKris Buschelman   switch (op) {
1196512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1197e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
119828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1199a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1200e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12014e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12024e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1203e98b92d7SKris Buschelman     break;
1204e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12054e0d8c25SBarry Smith     a->roworiented = flg;
12064e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12074e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1208e98b92d7SKris Buschelman     break;
12094e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1210290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1211e98b92d7SKris Buschelman     break;
1212e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12134e0d8c25SBarry Smith     a->donotstash = flg;
1214e98b92d7SKris Buschelman     break;
1215e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12164e0d8c25SBarry Smith     a->ht_flag = flg;
1217e98b92d7SKris Buschelman     break;
12189a4540c5SBarry Smith   case MAT_HERMITIAN:
1219e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1220eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1221547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1222eeffb40dSHong Zhang     break;
122377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1224eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1225eeffb40dSHong Zhang     break;
122677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1227eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1228eeffb40dSHong Zhang     break;
12299a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1230e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1231290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
123277e54ba9SKris Buschelman     break;
1233d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12344e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1235d0d4cfc2SHong Zhang     break;
1236d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12374e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1238d0d4cfc2SHong Zhang     break;
1239d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12404e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1241d0d4cfc2SHong Zhang     break;
1242e98b92d7SKris Buschelman   default:
1243e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1244a30f8f8cSSatish Balay   }
1245a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1246a30f8f8cSSatish Balay }
1247a30f8f8cSSatish Balay 
12484a2ae208SSatish Balay #undef __FUNCT__
12498115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1250fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1251a30f8f8cSSatish Balay {
1252dfbe8321SBarry Smith   PetscErrorCode ierr;
1253a30f8f8cSSatish Balay   PetscFunctionBegin;
1254815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1255999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1256fc4dec0aSBarry Smith   }
12578115998fSBarry Smith   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12614a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1262dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1263a30f8f8cSSatish Balay {
1264a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1265a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1266dfbe8321SBarry Smith   PetscErrorCode ierr;
12675e90f9d9SHong Zhang   PetscInt       nv,m,n;
1268b3bf805bSHong Zhang   PetscTruth     flg;
1269a30f8f8cSSatish Balay 
1270a30f8f8cSSatish Balay   PetscFunctionBegin;
1271a30f8f8cSSatish Balay   if (ll != rr){
1272b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1273e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1274a30f8f8cSSatish Balay   }
1275b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1276b3bf805bSHong Zhang 
12775e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1278e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1279b3bf805bSHong Zhang 
12805e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1281e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12825e90f9d9SHong Zhang 
1283ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12845e90f9d9SHong Zhang 
12855e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1286a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12875e90f9d9SHong Zhang 
12885e90f9d9SHong Zhang   /* scale the diagonal part */
1289a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1290a30f8f8cSSatish Balay 
12915e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1292ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1293a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1294a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1295a30f8f8cSSatish Balay }
1296a30f8f8cSSatish Balay 
12974a2ae208SSatish Balay #undef __FUNCT__
12984a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1299dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1300a30f8f8cSSatish Balay {
1301f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1302dfbe8321SBarry Smith   PetscErrorCode ierr;
1303a30f8f8cSSatish Balay 
1304a30f8f8cSSatish Balay   PetscFunctionBegin;
1305a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1307a30f8f8cSSatish Balay }
1308a30f8f8cSSatish Balay 
13096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1310a30f8f8cSSatish Balay 
13114a2ae208SSatish Balay #undef __FUNCT__
13124a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1313dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1314a30f8f8cSSatish Balay {
1315a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1316a30f8f8cSSatish Balay   Mat            a,b,c,d;
1317a30f8f8cSSatish Balay   PetscTruth     flg;
1318dfbe8321SBarry Smith   PetscErrorCode ierr;
1319a30f8f8cSSatish Balay 
1320a30f8f8cSSatish Balay   PetscFunctionBegin;
1321a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1322a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1323a30f8f8cSSatish Balay 
1324a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1325abc0a331SBarry Smith   if (flg) {
1326a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1327a30f8f8cSSatish Balay   }
13287adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1330a30f8f8cSSatish Balay }
1331a30f8f8cSSatish Balay 
13324a2ae208SSatish Balay #undef __FUNCT__
13333c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13343c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13353c896bc6SHong Zhang {
13363c896bc6SHong Zhang   PetscErrorCode ierr;
13373c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13383c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13393c896bc6SHong Zhang 
13403c896bc6SHong Zhang   PetscFunctionBegin;
13413c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13423c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1343d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13443c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1345d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13463c896bc6SHong Zhang   } else {
13473c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13483c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13493c896bc6SHong Zhang   }
13503c896bc6SHong Zhang   PetscFunctionReturn(0);
13513c896bc6SHong Zhang }
13523c896bc6SHong Zhang 
13533c896bc6SHong Zhang #undef __FUNCT__
13544a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1355dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1356273d9f13SBarry Smith {
1357dfbe8321SBarry Smith   PetscErrorCode ierr;
1358273d9f13SBarry Smith 
1359273d9f13SBarry Smith   PetscFunctionBegin;
1360db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1361273d9f13SBarry Smith   PetscFunctionReturn(0);
1362273d9f13SBarry Smith }
1363a5e6ed63SBarry Smith 
13644fe895cdSHong Zhang #undef __FUNCT__
13654fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13664fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13674fe895cdSHong Zhang {
13684fe895cdSHong Zhang   PetscErrorCode ierr;
13694fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13704fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13714fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13724fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13734fe895cdSHong Zhang 
13744fe895cdSHong Zhang   PetscFunctionBegin;
13754fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13764fe895cdSHong Zhang     PetscScalar alpha = a;
13774fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13784fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13790805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13804fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13814fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13824fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13830805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13844fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13854fe895cdSHong Zhang   } else {
1386d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13874fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1388d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13894fe895cdSHong Zhang   }
13904fe895cdSHong Zhang   PetscFunctionReturn(0);
13914fe895cdSHong Zhang }
13924fe895cdSHong Zhang 
1393a5e6ed63SBarry Smith #undef __FUNCT__
13946363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
13956363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
13966363de48SJed Brown {
13976363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13986363de48SJed Brown   PetscInt        rbs,cbs;
13996363de48SJed Brown   PetscErrorCode  ierr;
14006363de48SJed Brown 
14016363de48SJed Brown   PetscFunctionBegin;
14026363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14036363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14046363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14056363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1406e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1407e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14086363de48SJed Brown   PetscFunctionReturn(0);
14096363de48SJed Brown }
14106363de48SJed Brown 
14116363de48SJed Brown #undef __FUNCT__
1412a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14131302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1414a5e6ed63SBarry Smith {
14156849ba73SBarry Smith   PetscErrorCode ierr;
14161302d50aSBarry Smith   PetscInt       i;
1417a5e6ed63SBarry Smith   PetscTruth     flg;
1418a5e6ed63SBarry Smith 
14196849ba73SBarry Smith   PetscFunctionBegin;
1420a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1421a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1422e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1423a5e6ed63SBarry Smith   }
1424a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1425a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1426a5e6ed63SBarry Smith }
1427a5e6ed63SBarry Smith 
1428a5e6ed63SBarry Smith 
1429a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1430a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1431a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1432a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1433a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1434a9d4b620SHong Zhang        MatMult_MPISBAIJ,
143597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1436431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1437431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1438a30f8f8cSSatish Balay        0,
1439a30f8f8cSSatish Balay        0,
1440a30f8f8cSSatish Balay        0,
144197304618SKris Buschelman /*10*/ 0,
1442a30f8f8cSSatish Balay        0,
1443a30f8f8cSSatish Balay        0,
144441f059aeSBarry Smith        MatSOR_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
144697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1447a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1449a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1450a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
145197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1452a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1453a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1454a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1455d519adbfSMatthew Knepley /*24*/ 0,
1456a30f8f8cSSatish Balay        0,
1457a30f8f8cSSatish Balay        0,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
1460d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1461b5df2d14SHong Zhang        0,
1462a30f8f8cSSatish Balay        0,
1463a30f8f8cSSatish Balay        0,
1464a30f8f8cSSatish Balay        0,
1465d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1466a30f8f8cSSatish Balay        0,
1467a30f8f8cSSatish Balay        0,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1471a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1472d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1473a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14743c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1475d519adbfSMatthew Knepley /*44*/ 0,
1476a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
14806363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1481a30f8f8cSSatish Balay        0,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        0,
1484a30f8f8cSSatish Balay        0,
1485d519adbfSMatthew Knepley /*54*/ 0,
1486a30f8f8cSSatish Balay        0,
1487a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1488a30f8f8cSSatish Balay        0,
1489a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1490d519adbfSMatthew Knepley /*59*/ 0,
1491a30f8f8cSSatish Balay        0,
1492a30f8f8cSSatish Balay        0,
1493357abbc8SBarry Smith        0,
149424d5174aSHong Zhang        0,
1495d519adbfSMatthew Knepley /*64*/ 0,
149624d5174aSHong Zhang        0,
149724d5174aSHong Zhang        0,
149824d5174aSHong Zhang        0,
149924d5174aSHong Zhang        0,
1500d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
150124d5174aSHong Zhang        0,
150297304618SKris Buschelman        0,
150397304618SKris Buschelman        0,
150497304618SKris Buschelman        0,
1505d519adbfSMatthew Knepley /*74*/ 0,
150697304618SKris Buschelman        0,
150797304618SKris Buschelman        0,
150897304618SKris Buschelman        0,
150997304618SKris Buschelman        0,
1510d519adbfSMatthew Knepley /*79*/ 0,
151197304618SKris Buschelman        0,
151297304618SKris Buschelman        0,
151397304618SKris Buschelman        0,
1514865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1515d519adbfSMatthew Knepley /*84*/ 0,
1516865e5f61SKris Buschelman        0,
1517865e5f61SKris Buschelman        0,
1518865e5f61SKris Buschelman        0,
1519865e5f61SKris Buschelman        0,
1520d519adbfSMatthew Knepley /*89*/ 0,
1521865e5f61SKris Buschelman        0,
1522865e5f61SKris Buschelman        0,
1523865e5f61SKris Buschelman        0,
1524865e5f61SKris Buschelman        0,
1525d519adbfSMatthew Knepley /*94*/ 0,
1526865e5f61SKris Buschelman        0,
1527865e5f61SKris Buschelman        0,
152899cafbc1SBarry Smith        0,
152999cafbc1SBarry Smith        0,
1530d519adbfSMatthew Knepley /*99*/ 0,
153199cafbc1SBarry Smith        0,
153299cafbc1SBarry Smith        0,
153399cafbc1SBarry Smith        0,
153499cafbc1SBarry Smith        0,
1535d519adbfSMatthew Knepley /*104*/0,
153699cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1537d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1538d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1539*95936485SShri Abhyankar        MatRestoreRowUpperTriangular_MPISBAIJ,
1540*95936485SShri Abhyankar /*109*/0,
1541*95936485SShri Abhyankar        0,
1542*95936485SShri Abhyankar        0,
1543*95936485SShri Abhyankar        0,
1544*95936485SShri Abhyankar        0,
1545*95936485SShri Abhyankar /*114*/0,
1546*95936485SShri Abhyankar        0,
1547*95936485SShri Abhyankar        0,
1548*95936485SShri Abhyankar        0,
1549*95936485SShri Abhyankar        0,
1550*95936485SShri Abhyankar /*119*/0,
1551*95936485SShri Abhyankar        0,
1552*95936485SShri Abhyankar        0,
1553*95936485SShri Abhyankar        0,
1554*95936485SShri Abhyankar        MatLoadnew_MPISBAIJ
155599cafbc1SBarry Smith };
1556a30f8f8cSSatish Balay 
1557a30f8f8cSSatish Balay 
1558a30f8f8cSSatish Balay EXTERN_C_BEGIN
15594a2ae208SSatish Balay #undef __FUNCT__
15604a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1561be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1562a30f8f8cSSatish Balay {
1563a30f8f8cSSatish Balay   PetscFunctionBegin;
1564a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1565a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1566a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1567a30f8f8cSSatish Balay }
1568a30f8f8cSSatish Balay EXTERN_C_END
1569a30f8f8cSSatish Balay 
1570273d9f13SBarry Smith EXTERN_C_BEGIN
15714a2ae208SSatish Balay #undef __FUNCT__
1572a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1573be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1574a23d5eceSKris Buschelman {
1575a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1576dfbe8321SBarry Smith   PetscErrorCode ierr;
1577db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1578a23d5eceSKris Buschelman 
1579a23d5eceSKris Buschelman   PetscFunctionBegin;
1580db4efbfdSBarry Smith   if (bs < 0){
15817adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1582db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15838c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1584db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1585db4efbfdSBarry Smith   }
1586e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1587db4efbfdSBarry Smith   bs = newbs;
1588a23d5eceSKris Buschelman 
1589a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1590a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1591e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1592e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1593899cda47SBarry Smith 
1594d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
159526283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159626283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1597899cda47SBarry Smith 
1598a23d5eceSKris Buschelman   if (d_nnz) {
1599d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1600e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1601a23d5eceSKris Buschelman     }
1602a23d5eceSKris Buschelman   }
1603a23d5eceSKris Buschelman   if (o_nnz) {
1604d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1605e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1606a23d5eceSKris Buschelman     }
1607a23d5eceSKris Buschelman   }
1608a23d5eceSKris Buschelman 
1609a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1610d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1611d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1612d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1613e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1614a23d5eceSKris Buschelman   }
1615a23d5eceSKris Buschelman 
1616d0f46423SBarry Smith   B->rmap->bs  = bs;
1617a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1618a23d5eceSKris Buschelman   b->mbs = mbs;
1619a23d5eceSKris Buschelman   b->nbs = mbs;
1620a23d5eceSKris Buschelman   b->Mbs = Mbs;
1621a23d5eceSKris Buschelman   b->Nbs = Mbs;
1622a23d5eceSKris Buschelman 
1623a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1624d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1625a23d5eceSKris Buschelman   }
1626d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1627d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1628a23d5eceSKris Buschelman 
1629d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1630d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1631a23d5eceSKris Buschelman 
1632526dfc15SBarry Smith   if (!B->preallocated) {
1633f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1634d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16359c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163652e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1637f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1638d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16394aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164052e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
164115bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1642526dfc15SBarry Smith   }
1643a23d5eceSKris Buschelman 
1644526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1645526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1646526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1647a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1648a23d5eceSKris Buschelman }
1649a23d5eceSKris Buschelman EXTERN_C_END
1650a23d5eceSKris Buschelman 
16515c9eb25fSBarry Smith EXTERN_C_BEGIN
1652611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1653bccb9932SShri Abhyankar extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1654611f576cSBarry Smith #endif
1655611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16565c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1657611f576cSBarry Smith #endif
1658b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1659b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1660b5e56a35SBarry Smith #endif
16615c9eb25fSBarry Smith EXTERN_C_END
16625c9eb25fSBarry Smith 
16630bad9183SKris Buschelman /*MC
1664fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16650bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16660bad9183SKris Buschelman 
16670bad9183SKris Buschelman    Options Database Keys:
16680bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16690bad9183SKris Buschelman 
16700bad9183SKris Buschelman   Level: beginner
16710bad9183SKris Buschelman 
16720bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16730bad9183SKris Buschelman M*/
16740bad9183SKris Buschelman 
1675a23d5eceSKris Buschelman EXTERN_C_BEGIN
1676a23d5eceSKris Buschelman #undef __FUNCT__
16774a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1678be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1679b5df2d14SHong Zhang {
1680b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1681dfbe8321SBarry Smith   PetscErrorCode ierr;
1682b5df2d14SHong Zhang   PetscTruth     flg;
1683b5df2d14SHong Zhang 
1684b5df2d14SHong Zhang   PetscFunctionBegin;
1685b5df2d14SHong Zhang 
168638f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1687b0a32e0cSBarry Smith   B->data = (void*)b;
1688b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1689b5df2d14SHong Zhang 
1690b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1691b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1692b5df2d14SHong Zhang   B->mapping         = 0;
1693b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1694b5df2d14SHong Zhang 
1695b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16967adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16977adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1698b5df2d14SHong Zhang 
1699b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1700899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1701b5df2d14SHong Zhang 
1702b5df2d14SHong Zhang   /* build cache for off array entries formed */
17037adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1704b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1705b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1706b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1707b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1708b5df2d14SHong Zhang 
1709b5df2d14SHong Zhang   /* stuff used in block assembly */
1710b5df2d14SHong Zhang   b->barray       = 0;
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1713b5df2d14SHong Zhang   b->lvec         = 0;
1714b5df2d14SHong Zhang   b->Mvctx        = 0;
171540781036SHong Zhang   b->slvec0       = 0;
171640781036SHong Zhang   b->slvec0b      = 0;
171740781036SHong Zhang   b->slvec1       = 0;
171840781036SHong Zhang   b->slvec1a      = 0;
171940781036SHong Zhang   b->slvec1b      = 0;
172040781036SHong Zhang   b->sMvctx       = 0;
1721b5df2d14SHong Zhang 
1722b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1723b5df2d14SHong Zhang   b->rowindices   = 0;
1724b5df2d14SHong Zhang   b->rowvalues    = 0;
1725b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1726b5df2d14SHong Zhang 
1727b5df2d14SHong Zhang   /* hash table stuff */
1728b5df2d14SHong Zhang   b->ht           = 0;
1729b5df2d14SHong Zhang   b->hd           = 0;
1730b5df2d14SHong Zhang   b->ht_size      = 0;
1731b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1732b5df2d14SHong Zhang   b->ht_fact      = 0;
1733b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1734b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1735b5df2d14SHong Zhang 
173659ffdab8SBarry Smith   b->in_loc       = 0;
173759ffdab8SBarry Smith   b->v_loc        = 0;
173859ffdab8SBarry Smith   b->n_loc        = 0;
17397adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17408c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1741b5df2d14SHong Zhang     if (flg) {
1742f6275e2eSBarry Smith       PetscReal fact = 1.39;
17434e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17448c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1745b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1746b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17471e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1748b5df2d14SHong Zhang     }
17498c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17508c07d4e3SBarry Smith 
1751b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1752ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1753b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1754b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1755b5e56a35SBarry Smith #endif
1756611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1757ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1758bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1759bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1760611f576cSBarry Smith #endif
1761611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1762ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17635c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17645c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1765611f576cSBarry Smith #endif
1766b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1767b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1768b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1769b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1770b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1771b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1772b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1773b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1774b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1775a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1776a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1777a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
177823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
177923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1783b5df2d14SHong Zhang   PetscFunctionReturn(0);
1784b5df2d14SHong Zhang }
1785273d9f13SBarry Smith EXTERN_C_END
1786b5df2d14SHong Zhang 
1787209238afSKris Buschelman /*MC
1788002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1789209238afSKris Buschelman 
1790209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1791209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1792209238afSKris Buschelman 
1793209238afSKris Buschelman    Options Database Keys:
1794209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1795209238afSKris Buschelman 
1796209238afSKris Buschelman   Level: beginner
1797209238afSKris Buschelman 
1798209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1799209238afSKris Buschelman M*/
1800209238afSKris Buschelman 
1801209238afSKris Buschelman EXTERN_C_BEGIN
1802209238afSKris Buschelman #undef __FUNCT__
1803209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1804be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1805dfbe8321SBarry Smith {
18066849ba73SBarry Smith   PetscErrorCode ierr;
18071302d50aSBarry Smith   PetscMPIInt    size;
1808209238afSKris Buschelman 
1809209238afSKris Buschelman   PetscFunctionBegin;
18107adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1811209238afSKris Buschelman   if (size == 1) {
1812209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1813209238afSKris Buschelman   } else {
1814209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1815209238afSKris Buschelman   }
1816209238afSKris Buschelman   PetscFunctionReturn(0);
1817209238afSKris Buschelman }
1818209238afSKris Buschelman EXTERN_C_END
1819209238afSKris Buschelman 
18204a2ae208SSatish Balay #undef __FUNCT__
18214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1822b5df2d14SHong Zhang /*@C
1823b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1824b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1825b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1826b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1827b5df2d14SHong Zhang 
1828b5df2d14SHong Zhang    Collective on Mat
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    Input Parameters:
1831b5df2d14SHong Zhang +  A - the matrix
1832b5df2d14SHong Zhang .  bs   - size of blockk
1833b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1834b5df2d14SHong Zhang            submatrix  (same for all local rows)
1835b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18366d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18376d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18386d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1839b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1840b5df2d14SHong Zhang            submatrix (same for all local rows).
1841b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1842b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1843b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang 
1846b5df2d14SHong Zhang    Options Database Keys:
1847b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1848b5df2d14SHong Zhang                      block calculations (much slower)
1849b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1850b5df2d14SHong Zhang 
1851b5df2d14SHong Zhang    Notes:
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1854b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1855b5df2d14SHong Zhang 
185649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
185749a6f317SBarry Smith 
1858b5df2d14SHong Zhang    Storage Information:
1859b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1860b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1861b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1862b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1863b5df2d14SHong Zhang 
1864b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1865b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1866b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1867b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1868b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1869b5df2d14SHong Zhang 
1870aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1871aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1872aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1873aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1874aa95bbe8SBarry Smith 
1875b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1876b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1877b5df2d14SHong Zhang 
1878b5df2d14SHong Zhang .vb
1879b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1880b5df2d14SHong Zhang           -------------------
1881b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1882b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1883b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1884b5df2d14SHong Zhang           -------------------
1885b5df2d14SHong Zhang .ve
1886b5df2d14SHong Zhang 
1887b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1888b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18896d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18906d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1891b5df2d14SHong Zhang 
18926d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18936d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1894b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1895b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1896b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1897b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1898b5df2d14SHong Zhang    matrices.
1899b5df2d14SHong Zhang 
1900b5df2d14SHong Zhang    Level: intermediate
1901b5df2d14SHong Zhang 
1902b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1903b5df2d14SHong Zhang 
1904b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1905b5df2d14SHong Zhang @*/
1906be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1907b5df2d14SHong Zhang {
19081302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1909b5df2d14SHong Zhang 
1910b5df2d14SHong Zhang   PetscFunctionBegin;
1911a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1912a23d5eceSKris Buschelman   if (f) {
1913a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1914b5df2d14SHong Zhang   }
1915b5df2d14SHong Zhang   PetscFunctionReturn(0);
1916b5df2d14SHong Zhang }
1917b5df2d14SHong Zhang 
19184a2ae208SSatish Balay #undef __FUNCT__
19194a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1920a30f8f8cSSatish Balay /*@C
1921a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1922a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1923a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1924a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1925a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1926a30f8f8cSSatish Balay 
1927a30f8f8cSSatish Balay    Collective on MPI_Comm
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay    Input Parameters:
1930a30f8f8cSSatish Balay +  comm - MPI communicator
1931a30f8f8cSSatish Balay .  bs   - size of blockk
1932a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1933a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1934a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1935a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1936a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1937a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1938a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1939a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1940a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1941a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1942a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19436d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19446d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19456d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1946a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1947a30f8f8cSSatish Balay            submatrix (same for all local rows).
1948a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1949a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1950a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1951a30f8f8cSSatish Balay 
1952a30f8f8cSSatish Balay    Output Parameter:
1953a30f8f8cSSatish Balay .  A - the matrix
1954a30f8f8cSSatish Balay 
1955a30f8f8cSSatish Balay    Options Database Keys:
1956a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1957a30f8f8cSSatish Balay                      block calculations (much slower)
1958a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1959a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1960a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1961a30f8f8cSSatish Balay 
1962175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1963ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1964175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1965175b88e8SBarry Smith 
1966a30f8f8cSSatish Balay    Notes:
1967d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19686d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1969d1be2dadSMatthew Knepley 
1970a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1971a30f8f8cSSatish Balay    (possibly both).
1972a30f8f8cSSatish Balay 
1973a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1974a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1975a30f8f8cSSatish Balay 
197649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
197749a6f317SBarry Smith 
1978a30f8f8cSSatish Balay    Storage Information:
1979a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1980a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1981a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1982a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1983a30f8f8cSSatish Balay 
1984a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1985a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1986a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1987a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1988a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1989a30f8f8cSSatish Balay 
1990a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1991a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1992a30f8f8cSSatish Balay 
1993a30f8f8cSSatish Balay .vb
1994a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1995a30f8f8cSSatish Balay           -------------------
1996a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1997a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1998a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1999a30f8f8cSSatish Balay           -------------------
2000a30f8f8cSSatish Balay .ve
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2003a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20046d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20056d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2006a30f8f8cSSatish Balay 
20076d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20086d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2009a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2010a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2011a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2012a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2013a30f8f8cSSatish Balay    matrices.
2014a30f8f8cSSatish Balay 
2015a30f8f8cSSatish Balay    Level: intermediate
2016a30f8f8cSSatish Balay 
2017a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2018a30f8f8cSSatish Balay 
2019a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2020a30f8f8cSSatish Balay @*/
2021a30f8f8cSSatish Balay 
2022be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2023a30f8f8cSSatish Balay {
20246849ba73SBarry Smith   PetscErrorCode ierr;
20251302d50aSBarry Smith   PetscMPIInt    size;
2026a30f8f8cSSatish Balay 
2027a30f8f8cSSatish Balay   PetscFunctionBegin;
2028f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2029f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2030273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2031273d9f13SBarry Smith   if (size > 1) {
2032b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2033b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2034273d9f13SBarry Smith   } else {
2035273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2036273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2037273d9f13SBarry Smith   }
2038a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2039a30f8f8cSSatish Balay }
2040a30f8f8cSSatish Balay 
2041a30f8f8cSSatish Balay 
20424a2ae208SSatish Balay #undef __FUNCT__
20434a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2045a30f8f8cSSatish Balay {
2046a30f8f8cSSatish Balay   Mat            mat;
2047a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2048dfbe8321SBarry Smith   PetscErrorCode ierr;
2049d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2050387bc808SHong Zhang   PetscScalar    *array;
2051a30f8f8cSSatish Balay 
2052a30f8f8cSSatish Balay   PetscFunctionBegin;
2053a30f8f8cSSatish Balay   *newmat       = 0;
20547adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2055d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20567adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20571d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
205826283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
205926283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2060e1b6402fSHong Zhang 
2061d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2062273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20647fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20657fff6886SHong Zhang 
2066b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2067a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2068a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2069a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2070a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2071a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2072a30f8f8cSSatish Balay 
2073899cda47SBarry Smith 
2074a30f8f8cSSatish Balay   a->size         = oldmat->size;
2075a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2076a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2077a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2078a30f8f8cSSatish Balay   a->rowindices   = 0;
2079a30f8f8cSSatish Balay   a->rowvalues    = 0;
2080a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2081a30f8f8cSSatish Balay   a->barray       = 0;
2082899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2083899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2084899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2085899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2086a30f8f8cSSatish Balay 
2087a30f8f8cSSatish Balay   /* hash table stuff */
2088a30f8f8cSSatish Balay   a->ht           = 0;
2089a30f8f8cSSatish Balay   a->hd           = 0;
2090a30f8f8cSSatish Balay   a->ht_size      = 0;
2091a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2092a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2093a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2094a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2095a30f8f8cSSatish Balay 
2096899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2097a30f8f8cSSatish Balay   if (oldmat->colmap) {
2098a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2099a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2100a30f8f8cSSatish Balay #else
21011302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21031302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2104a30f8f8cSSatish Balay #endif
2105a30f8f8cSSatish Balay   } else a->colmap = 0;
2106387bc808SHong Zhang 
2107a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21081302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
210952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21101302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2111a30f8f8cSSatish Balay   } else a->garray = 0;
2112a30f8f8cSSatish Balay 
2113533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2114a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
211552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2116a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
211752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
211882327fa8SHong Zhang 
211982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2123387bc808SHong Zhang 
2124387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21251ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2126387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2127387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21281ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21291ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2130387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2137387bc808SHong Zhang 
2138387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2139387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2140387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214282327fa8SHong Zhang 
2143a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2145a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21477adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay   *newmat = mat;
2149a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2150a30f8f8cSSatish Balay }
2151a30f8f8cSSatish Balay 
21524a2ae208SSatish Balay #undef __FUNCT__
21534a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2154a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2155a30f8f8cSSatish Balay {
2156a30f8f8cSSatish Balay   Mat            A;
21576849ba73SBarry Smith   PetscErrorCode ierr;
215813f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
215987828ca2SBarry Smith   PetscScalar    *vals,*buf;
2160a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2161a30f8f8cSSatish Balay   MPI_Status     status;
2162e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
216313f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21642fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21651302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21661302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21671302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
216813f74950SBarry Smith   int            fd;
2169a30f8f8cSSatish Balay 
2170a30f8f8cSSatish Balay   PetscFunctionBegin;
217177925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21728c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21738c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2174a30f8f8cSSatish Balay 
2175a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2176a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay   if (!rank) {
2178b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2180e32f2f54SBarry Smith     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2181e7e72b3dSBarry Smith     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2182a30f8f8cSSatish Balay   }
2183a30f8f8cSSatish Balay 
2184a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2185a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2186a30f8f8cSSatish Balay 
2187e32f2f54SBarry Smith   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
2188a30f8f8cSSatish Balay 
2189a30f8f8cSSatish Balay   /*
2190a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2191a30f8f8cSSatish Balay      divisible by the blocksize
2192a30f8f8cSSatish Balay   */
2193a30f8f8cSSatish Balay   Mbs        = M/bs;
2194a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2195a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2196a30f8f8cSSatish Balay   else                  Mbs++;
2197a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21981e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2199a30f8f8cSSatish Balay   }
2200a30f8f8cSSatish Balay 
2201a30f8f8cSSatish Balay   /* determine ownership of all rows */
2202a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2203a30f8f8cSSatish Balay   m          = mbs*bs;
220474ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2205e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2206e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay   rowners[0] = 0;
2208a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2209a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2210a30f8f8cSSatish Balay   rstart = rowners[rank];
2211a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2212a30f8f8cSSatish Balay 
2213a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22142fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay   if (!rank) {
22161302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2217a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2218a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2219a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2220a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2221a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2223a30f8f8cSSatish Balay   } else {
2224a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay   }
2226a30f8f8cSSatish Balay 
22270222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2228a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22291302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22301302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2231a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2232a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2233a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2234a30f8f8cSSatish Balay       }
2235a30f8f8cSSatish Balay     }
2236a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2237a30f8f8cSSatish Balay 
2238a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2239a30f8f8cSSatish Balay     maxnz = 0;
2240a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2241a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2242a30f8f8cSSatish Balay     }
22431302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2244a30f8f8cSSatish Balay 
2245a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2246a30f8f8cSSatish Balay     nz     = procsnz[0];
22471302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2248a30f8f8cSSatish Balay     mycols = ibuf;
2249a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2250a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2252a30f8f8cSSatish Balay 
2253a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2254a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2255a30f8f8cSSatish Balay       nz   = procsnz[i];
2256a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2257a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay     }
2259a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2260a30f8f8cSSatish Balay     if (size != 1) {
2261a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2262a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2263a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2264a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay     }
2266a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22670222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2268a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2269a30f8f8cSSatish Balay     nz = 0;
2270a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2271a30f8f8cSSatish Balay       nz += locrowlens[i];
2272a30f8f8cSSatish Balay     }
22731302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2274a30f8f8cSSatish Balay     mycols = ibuf;
2275a30f8f8cSSatish Balay     /* receive message of column indices*/
2276a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2277a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
2278e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2279a30f8f8cSSatish Balay   }
2280a30f8f8cSSatish Balay 
2281a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
228274ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
228374ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
228474ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
228574ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
228674ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
228774ed9c26SBarry Smith   rowcount = 0;
228874ed9c26SBarry Smith   nzcount  = 0;
2289a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2290a30f8f8cSSatish Balay     dcount  = 0;
2291a30f8f8cSSatish Balay     odcount = 0;
2292a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2293a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2294a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22950222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2296a30f8f8cSSatish Balay         if (!mask[tmp]) {
2297a30f8f8cSSatish Balay           mask[tmp] = 1;
22980222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22990222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2300a30f8f8cSSatish Balay         }
2301a30f8f8cSSatish Balay       }
2302a30f8f8cSSatish Balay       rowcount++;
2303a30f8f8cSSatish Balay     }
2304a30f8f8cSSatish Balay 
23050222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23060222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2307a30f8f8cSSatish Balay 
2308a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2309a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2310a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2311a30f8f8cSSatish Balay   }
2312a30f8f8cSSatish Balay 
2313a30f8f8cSSatish Balay   /* create our matrix */
2314f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2315f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
231622191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
231717fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
231822191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay   if (!rank) {
232187828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2322a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2323a30f8f8cSSatish Balay     nz = procsnz[0];
2324a30f8f8cSSatish Balay     vals = buf;
2325a30f8f8cSSatish Balay     mycols = ibuf;
2326a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2327a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2328a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2329a30f8f8cSSatish Balay 
2330a30f8f8cSSatish Balay     /* insert into matrix */
2331a30f8f8cSSatish Balay     jj      = rstart*bs;
2332a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23337e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2334a30f8f8cSSatish Balay       mycols += locrowlens[i];
2335a30f8f8cSSatish Balay       vals   += locrowlens[i];
2336a30f8f8cSSatish Balay       jj++;
2337a30f8f8cSSatish Balay     }
23387e06b45fSHong Zhang 
2339a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2340a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2341a30f8f8cSSatish Balay       nz   = procsnz[i];
2342a30f8f8cSSatish Balay       vals = buf;
2343a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23447adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2345a30f8f8cSSatish Balay     }
2346a30f8f8cSSatish Balay     /* the last proc */
2347a30f8f8cSSatish Balay     if (size != 1){
2348a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2349a30f8f8cSSatish Balay       vals = buf;
2350a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2351a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23527adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2353a30f8f8cSSatish Balay     }
2354a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23557e06b45fSHong Zhang 
2356a30f8f8cSSatish Balay   } else {
2357a30f8f8cSSatish Balay     /* receive numeric values */
235887828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2359a30f8f8cSSatish Balay 
2360a30f8f8cSSatish Balay     /* receive message of values*/
2361a30f8f8cSSatish Balay     vals   = buf;
2362a30f8f8cSSatish Balay     mycols = ibuf;
23637adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2364a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2365e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2366a30f8f8cSSatish Balay 
2367a30f8f8cSSatish Balay     /* insert into matrix */
2368a30f8f8cSSatish Balay     jj      = rstart*bs;
2369a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2370a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay       mycols += locrowlens[i];
2372a30f8f8cSSatish Balay       vals   += locrowlens[i];
2373a30f8f8cSSatish Balay       jj++;
2374a30f8f8cSSatish Balay     }
2375a30f8f8cSSatish Balay   }
23767e06b45fSHong Zhang 
2377a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2378a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2379a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
238074ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
238174ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
238274ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2383a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2384a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238522191285SKris Buschelman   *newmat = A;
2386a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2387a30f8f8cSSatish Balay }
2388a30f8f8cSSatish Balay 
23894a2ae208SSatish Balay #undef __FUNCT__
2390*95936485SShri Abhyankar #define __FUNCT__ "MatLoadnew_MPISBAIJ"
2391*95936485SShri Abhyankar PetscErrorCode MatLoadnew_MPISBAIJ(PetscViewer viewer, Mat newmat)
2392*95936485SShri Abhyankar {
2393*95936485SShri Abhyankar   PetscErrorCode ierr;
2394*95936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
2395*95936485SShri Abhyankar   PetscScalar    *vals,*buf;
2396*95936485SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2397*95936485SShri Abhyankar   MPI_Status     status;
2398*95936485SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
2399*95936485SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
2400*95936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
2401*95936485SShri Abhyankar   PetscInt       bs=1,Mbs,mbs,extra_rows;
2402*95936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2403*95936485SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols;
2404*95936485SShri Abhyankar   int            fd;
2405*95936485SShri Abhyankar 
2406*95936485SShri Abhyankar   PetscFunctionBegin;
2407*95936485SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
2408*95936485SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
2409*95936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2410*95936485SShri Abhyankar 
2411*95936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2412*95936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2413*95936485SShri Abhyankar   if (!rank) {
2414*95936485SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2415*95936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2416*95936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2417*95936485SShri Abhyankar     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2418*95936485SShri Abhyankar   }
2419*95936485SShri Abhyankar 
2420*95936485SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
2421*95936485SShri Abhyankar 
2422*95936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2423*95936485SShri Abhyankar   M = header[1]; N = header[2];
2424*95936485SShri Abhyankar 
2425*95936485SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
2426*95936485SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
2427*95936485SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
2428*95936485SShri Abhyankar 
2429*95936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2430*95936485SShri Abhyankar   if (sizesset) {
2431*95936485SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
2432*95936485SShri Abhyankar   }
2433*95936485SShri Abhyankar   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Incostintent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
2434*95936485SShri Abhyankar   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Incostintent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
2435*95936485SShri Abhyankar 
2436*95936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
2437*95936485SShri Abhyankar 
2438*95936485SShri Abhyankar   /*
2439*95936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
2440*95936485SShri Abhyankar      divisible by the blocksize
2441*95936485SShri Abhyankar   */
2442*95936485SShri Abhyankar   Mbs        = M/bs;
2443*95936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
2444*95936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
2445*95936485SShri Abhyankar   else                  Mbs++;
2446*95936485SShri Abhyankar   if (extra_rows &&!rank) {
2447*95936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2448*95936485SShri Abhyankar   }
2449*95936485SShri Abhyankar 
2450*95936485SShri Abhyankar   /* determine ownership of all rows */
2451*95936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
2452*95936485SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
2453*95936485SShri Abhyankar     m          = mbs*bs;
2454*95936485SShri Abhyankar   } else { /* User Set */
2455*95936485SShri Abhyankar     m          = newmat->rmap->n;
2456*95936485SShri Abhyankar     mbs        = m/bs;
2457*95936485SShri Abhyankar   }
2458*95936485SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2459*95936485SShri Abhyankar   mmbs       = PetscMPIIntCast(mbs);
2460*95936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2461*95936485SShri Abhyankar   rowners[0] = 0;
2462*95936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2463*95936485SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2464*95936485SShri Abhyankar   rstart = rowners[rank];
2465*95936485SShri Abhyankar   rend   = rowners[rank+1];
2466*95936485SShri Abhyankar 
2467*95936485SShri Abhyankar   /* distribute row lengths to all processors */
2468*95936485SShri Abhyankar   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2469*95936485SShri Abhyankar   if (!rank) {
2470*95936485SShri Abhyankar     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2471*95936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2472*95936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2473*95936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2474*95936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2475*95936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2476*95936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2477*95936485SShri Abhyankar   } else {
2478*95936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2479*95936485SShri Abhyankar   }
2480*95936485SShri Abhyankar 
2481*95936485SShri Abhyankar   if (!rank) {   /* procs[0] */
2482*95936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2483*95936485SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2484*95936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2485*95936485SShri Abhyankar     for (i=0; i<size; i++) {
2486*95936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2487*95936485SShri Abhyankar         procsnz[i] += rowlengths[j];
2488*95936485SShri Abhyankar       }
2489*95936485SShri Abhyankar     }
2490*95936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2491*95936485SShri Abhyankar 
2492*95936485SShri Abhyankar     /* determine max buffer needed and allocate it */
2493*95936485SShri Abhyankar     maxnz = 0;
2494*95936485SShri Abhyankar     for (i=0; i<size; i++) {
2495*95936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
2496*95936485SShri Abhyankar     }
2497*95936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2498*95936485SShri Abhyankar 
2499*95936485SShri Abhyankar     /* read in my part of the matrix column indices  */
2500*95936485SShri Abhyankar     nz     = procsnz[0];
2501*95936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2502*95936485SShri Abhyankar     mycols = ibuf;
2503*95936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
2504*95936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2505*95936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2506*95936485SShri Abhyankar 
2507*95936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
2508*95936485SShri Abhyankar     for (i=1; i<size-1; i++) {
2509*95936485SShri Abhyankar       nz   = procsnz[i];
2510*95936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2511*95936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2512*95936485SShri Abhyankar     }
2513*95936485SShri Abhyankar     /* read in the stuff for the last proc */
2514*95936485SShri Abhyankar     if (size != 1) {
2515*95936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2516*95936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2517*95936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2518*95936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2519*95936485SShri Abhyankar     }
2520*95936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
2521*95936485SShri Abhyankar   } else {  /* procs[i], i>0 */
2522*95936485SShri Abhyankar     /* determine buffer space needed for message */
2523*95936485SShri Abhyankar     nz = 0;
2524*95936485SShri Abhyankar     for (i=0; i<m; i++) {
2525*95936485SShri Abhyankar       nz += locrowlens[i];
2526*95936485SShri Abhyankar     }
2527*95936485SShri Abhyankar     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2528*95936485SShri Abhyankar     mycols = ibuf;
2529*95936485SShri Abhyankar     /* receive message of column indices*/
2530*95936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2531*95936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
2532*95936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2533*95936485SShri Abhyankar   }
2534*95936485SShri Abhyankar 
2535*95936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2536*95936485SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2537*95936485SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2538*95936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2539*95936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2540*95936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2541*95936485SShri Abhyankar   rowcount = 0;
2542*95936485SShri Abhyankar   nzcount  = 0;
2543*95936485SShri Abhyankar   for (i=0; i<mbs; i++) {
2544*95936485SShri Abhyankar     dcount  = 0;
2545*95936485SShri Abhyankar     odcount = 0;
2546*95936485SShri Abhyankar     for (j=0; j<bs; j++) {
2547*95936485SShri Abhyankar       kmax = locrowlens[rowcount];
2548*95936485SShri Abhyankar       for (k=0; k<kmax; k++) {
2549*95936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
2550*95936485SShri Abhyankar         if (!mask[tmp]) {
2551*95936485SShri Abhyankar           mask[tmp] = 1;
2552*95936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
2553*95936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
2554*95936485SShri Abhyankar         }
2555*95936485SShri Abhyankar       }
2556*95936485SShri Abhyankar       rowcount++;
2557*95936485SShri Abhyankar     }
2558*95936485SShri Abhyankar 
2559*95936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
2560*95936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
2561*95936485SShri Abhyankar 
2562*95936485SShri Abhyankar     /* zero out the mask elements we set */
2563*95936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2564*95936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2565*95936485SShri Abhyankar   }
2566*95936485SShri Abhyankar     if (!sizesset) {
2567*95936485SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
2568*95936485SShri Abhyankar   }
2569*95936485SShri Abhyankar   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2570*95936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2571*95936485SShri Abhyankar 
2572*95936485SShri Abhyankar   if (!rank) {
2573*95936485SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2574*95936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
2575*95936485SShri Abhyankar     nz = procsnz[0];
2576*95936485SShri Abhyankar     vals = buf;
2577*95936485SShri Abhyankar     mycols = ibuf;
2578*95936485SShri Abhyankar     if (size == 1)  nz -= extra_rows;
2579*95936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2580*95936485SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2581*95936485SShri Abhyankar 
2582*95936485SShri Abhyankar     /* insert into matrix */
2583*95936485SShri Abhyankar     jj      = rstart*bs;
2584*95936485SShri Abhyankar     for (i=0; i<m; i++) {
2585*95936485SShri Abhyankar       ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2586*95936485SShri Abhyankar       mycols += locrowlens[i];
2587*95936485SShri Abhyankar       vals   += locrowlens[i];
2588*95936485SShri Abhyankar       jj++;
2589*95936485SShri Abhyankar     }
2590*95936485SShri Abhyankar 
2591*95936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
2592*95936485SShri Abhyankar     for (i=1; i<size-1; i++) {
2593*95936485SShri Abhyankar       nz   = procsnz[i];
2594*95936485SShri Abhyankar       vals = buf;
2595*95936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2596*95936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
2597*95936485SShri Abhyankar     }
2598*95936485SShri Abhyankar     /* the last proc */
2599*95936485SShri Abhyankar     if (size != 1){
2600*95936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
2601*95936485SShri Abhyankar       vals = buf;
2602*95936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2603*95936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2604*95936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
2605*95936485SShri Abhyankar     }
2606*95936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2607*95936485SShri Abhyankar 
2608*95936485SShri Abhyankar   } else {
2609*95936485SShri Abhyankar     /* receive numeric values */
2610*95936485SShri Abhyankar     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2611*95936485SShri Abhyankar 
2612*95936485SShri Abhyankar     /* receive message of values*/
2613*95936485SShri Abhyankar     vals   = buf;
2614*95936485SShri Abhyankar     mycols = ibuf;
2615*95936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
2616*95936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2617*95936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2618*95936485SShri Abhyankar 
2619*95936485SShri Abhyankar     /* insert into matrix */
2620*95936485SShri Abhyankar     jj      = rstart*bs;
2621*95936485SShri Abhyankar     for (i=0; i<m; i++) {
2622*95936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2623*95936485SShri Abhyankar       mycols += locrowlens[i];
2624*95936485SShri Abhyankar       vals   += locrowlens[i];
2625*95936485SShri Abhyankar       jj++;
2626*95936485SShri Abhyankar     }
2627*95936485SShri Abhyankar   }
2628*95936485SShri Abhyankar 
2629*95936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2630*95936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
2631*95936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2632*95936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2633*95936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2634*95936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2635*95936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2636*95936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2637*95936485SShri Abhyankar   PetscFunctionReturn(0);
2638*95936485SShri Abhyankar }
2639*95936485SShri Abhyankar 
2640*95936485SShri Abhyankar #undef __FUNCT__
26414a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2642dcf5cc72SBarry Smith /*XXXXX@
2643a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2644a30f8f8cSSatish Balay 
2645a30f8f8cSSatish Balay    Input Parameters:
2646a30f8f8cSSatish Balay .  mat  - the matrix
2647a30f8f8cSSatish Balay .  fact - factor
2648a30f8f8cSSatish Balay 
2649a30f8f8cSSatish Balay    Collective on Mat
2650a30f8f8cSSatish Balay 
2651a30f8f8cSSatish Balay    Level: advanced
2652a30f8f8cSSatish Balay 
2653a30f8f8cSSatish Balay   Notes:
2654a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2655a30f8f8cSSatish Balay 
2656a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2657a30f8f8cSSatish Balay 
2658a30f8f8cSSatish Balay .seealso: MatSetOption()
2659dcf5cc72SBarry Smith @XXXXX*/
2660dcf5cc72SBarry Smith 
266124d5174aSHong Zhang 
26624a2ae208SSatish Balay #undef __FUNCT__
2663985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2664985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
266524d5174aSHong Zhang {
266624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2667f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2668ca54ac64SHong Zhang   PetscReal      atmp;
266987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2670dfbe8321SBarry Smith   PetscErrorCode ierr;
26711302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
26721302d50aSBarry Smith   PetscMPIInt    rank,size;
26731302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
267487828ca2SBarry Smith   PetscScalar    *va;
26758a1c53f2SBarry Smith   MatScalar      *ba;
2676f4c0e9e4SHong Zhang   MPI_Status     stat;
267724d5174aSHong Zhang 
267824d5174aSHong Zhang   PetscFunctionBegin;
2679e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2680985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
26811ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2682f4c0e9e4SHong Zhang 
26837adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
26847adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2685f4c0e9e4SHong Zhang 
2686d0f46423SBarry Smith   bs   = A->rmap->bs;
2687f4c0e9e4SHong Zhang   mbs  = a->mbs;
2688f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2689f4c0e9e4SHong Zhang   ba   = b->a;
2690f4c0e9e4SHong Zhang   bi   = b->i;
2691f4c0e9e4SHong Zhang   bj   = b->j;
2692f4c0e9e4SHong Zhang 
2693f4c0e9e4SHong Zhang   /* find ownerships */
2694d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2695f4c0e9e4SHong Zhang 
2696f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
269782502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2698ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2699f4c0e9e4SHong Zhang 
2700f4c0e9e4SHong Zhang   /* row_max for B */
2701b8475685SHong Zhang   if (rank != size-1){
2702f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2703f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2704f4c0e9e4SHong Zhang       brow  = bs*i;
2705f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2706f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2707f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2708ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
270904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2710f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2711f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2712ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2713ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2714f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2715f4c0e9e4SHong Zhang           }
2716f4c0e9e4SHong Zhang         }
2717f4c0e9e4SHong Zhang         bj++;
2718f4c0e9e4SHong Zhang       }
2719f4c0e9e4SHong Zhang     }
2720f4c0e9e4SHong Zhang 
2721f4c0e9e4SHong Zhang     /* send values to its owners */
2722f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2723f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2724ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
27257adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2726ca54ac64SHong Zhang     }
2727f4c0e9e4SHong Zhang   }
2728f4c0e9e4SHong Zhang 
2729f4c0e9e4SHong Zhang   /* receive values */
2730ca54ac64SHong Zhang   if (rank){
2731f4c0e9e4SHong Zhang     rvalues = work;
2732ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2733f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
27347adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2735f4c0e9e4SHong Zhang       /* process values */
2736f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2737ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2738f4c0e9e4SHong Zhang       }
2739f4c0e9e4SHong Zhang     }
2740ca54ac64SHong Zhang   }
2741f4c0e9e4SHong Zhang 
27421ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2743ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
274424d5174aSHong Zhang   PetscFunctionReturn(0);
274524d5174aSHong Zhang }
27462798e883SHong Zhang 
27472798e883SHong Zhang #undef __FUNCT__
274841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
274941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
27502798e883SHong Zhang {
27512798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2752dfbe8321SBarry Smith   PetscErrorCode    ierr;
2753d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
27543649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2755ffe4fb16SHong Zhang   Vec               bb1;
27563649974fSBarry Smith   const PetscScalar *b;
2757ffe4fb16SHong Zhang 
2758ffe4fb16SHong Zhang   PetscFunctionBegin;
2759e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2760e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2761ffe4fb16SHong Zhang 
2762a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
276341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2764a2b30743SBarry Smith     PetscFunctionReturn(0);
2765a2b30743SBarry Smith   }
2766a2b30743SBarry Smith 
2767ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2768ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
276941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2770ffe4fb16SHong Zhang       its--;
2771ffe4fb16SHong Zhang     }
2772ffe4fb16SHong Zhang 
2773ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2774ffe4fb16SHong Zhang     while (its--){
2775ffe4fb16SHong Zhang 
2776ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2777ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2778ffe4fb16SHong Zhang 
2779ffe4fb16SHong Zhang       /* copy xx into slvec0a */
27801ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
27811ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2782ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
27831ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2784ffe4fb16SHong Zhang 
2785efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2786ffe4fb16SHong Zhang 
2787ffe4fb16SHong Zhang       /* copy bb into slvec1a */
27881ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
27893649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2790ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
27911ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2792ffe4fb16SHong Zhang 
2793ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2794fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2795ffe4fb16SHong Zhang 
2796ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27971ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2798a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2799ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2800ffe4fb16SHong Zhang 
2801ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2802ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2803ffe4fb16SHong Zhang 
2804ffe4fb16SHong Zhang       /* local diagonal sweep */
280541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2806ffe4fb16SHong Zhang     }
2807ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2808fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
280941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2810fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
281141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2812fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2813fa22f6d0SBarry Smith     Vec               xx1;
2814fa22f6d0SBarry Smith     PetscTruth        hasop;
281520f1ed55SBarry Smith     const PetscScalar *diag;
2816887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
281720f1ed55SBarry Smith     PetscInt          i,n;
2818fa22f6d0SBarry Smith 
2819fa22f6d0SBarry Smith     if (!mat->xx1) {
2820fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2821fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2822fa22f6d0SBarry Smith     }
2823fa22f6d0SBarry Smith     xx1 = mat->xx1;
2824fa22f6d0SBarry Smith     bb1 = mat->bb1;
2825fa22f6d0SBarry Smith 
282641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2827fa22f6d0SBarry Smith 
2828fa22f6d0SBarry Smith     if (!mat->diag) {
2829effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2830fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2831fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2832fa22f6d0SBarry Smith     }
2833fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2834fa22f6d0SBarry Smith 
2835fa22f6d0SBarry Smith     if (hasop) {
2836fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2837887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
283820f1ed55SBarry Smith     } else {
283920f1ed55SBarry Smith       /*
284020f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
284120f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2842887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
284320f1ed55SBarry Smith       */
284420f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
28453649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
28463649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
284720f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
284820f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2849887ee2caSBarry Smith       if (omega == 1.0) {
285020f1ed55SBarry Smith 	for (i=0; i<n; i++) {
285120f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
285220f1ed55SBarry Smith 	}
285320f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2854887ee2caSBarry Smith       } else {
2855887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2856887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2857887ee2caSBarry Smith 	}
2858887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2859887ee2caSBarry Smith       }
286020f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
28613649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
28623649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
286320f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
286420f1ed55SBarry Smith     }
2865fa22f6d0SBarry Smith 
2866fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2867fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2868fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2869fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2870fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2871fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2872fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2873fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2874fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2875fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2876effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2877fa22f6d0SBarry Smith 
2878fa22f6d0SBarry Smith     /* local sweep */
287941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2880fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2881ffe4fb16SHong Zhang   } else {
2882e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2883ffe4fb16SHong Zhang   }
2884ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2885ffe4fb16SHong Zhang }
2886ffe4fb16SHong Zhang 
2887ffe4fb16SHong Zhang #undef __FUNCT__
288841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
288941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2890ffe4fb16SHong Zhang {
2891ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2892dfbe8321SBarry Smith   PetscErrorCode ierr;
28932798e883SHong Zhang   Vec            lvec1,bb1;
28942798e883SHong Zhang 
28952798e883SHong Zhang   PetscFunctionBegin;
2896e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2897e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
28982798e883SHong Zhang 
2899c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
29002798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
290141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
29022798e883SHong Zhang       its--;
29032798e883SHong Zhang     }
29042798e883SHong Zhang 
29052798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
29062798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
29072798e883SHong Zhang     while (its--){
2908ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29092798e883SHong Zhang 
29102798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
29112798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2912efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
29132798e883SHong Zhang 
2914ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
29152798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2916ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
29172798e883SHong Zhang 
29182798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2919efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
29202798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
29212798e883SHong Zhang 
2922ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
29232798e883SHong Zhang 
2924c14dc6b6SHong Zhang       /* diagonal sweep */
292541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
29262798e883SHong Zhang     }
29272798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
29282798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2929c14dc6b6SHong Zhang   } else {
2930e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2931c14dc6b6SHong Zhang   }
29322798e883SHong Zhang   PetscFunctionReturn(0);
29332798e883SHong Zhang }
29342798e883SHong Zhang 
2935