1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237a30f8f8cSSatish Balay a_noinsert:; \ 238a30f8f8cSSatish Balay ailen[brow] = nrow; \ 239a8f51744SPierre Jolivet } while (0) 240e5e170daSBarry Smith 241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 242a8f51744SPierre Jolivet do { \ 243a30f8f8cSSatish Balay brow = row / bs; \ 2449371c9d4SSatish Balay rp = bj + bi[brow]; \ 2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2469371c9d4SSatish Balay rmax = bimax[brow]; \ 2479371c9d4SSatish Balay nrow = bilen[brow]; \ 248a30f8f8cSSatish Balay bcol = col / bs; \ 2499371c9d4SSatish Balay ridx = row % bs; \ 2509371c9d4SSatish Balay cidx = col % bs; \ 2519371c9d4SSatish Balay low = 0; \ 2529371c9d4SSatish Balay high = nrow; \ 253a30f8f8cSSatish Balay while (high - low > 3) { \ 254a30f8f8cSSatish Balay t = (low + high) / 2; \ 255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 256a30f8f8cSSatish Balay else low = t; \ 257a30f8f8cSSatish Balay } \ 258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 263a30f8f8cSSatish Balay else *bap = value; \ 264a30f8f8cSSatish Balay goto b_noinsert; \ 265a30f8f8cSSatish Balay } \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 270a30f8f8cSSatish Balay N = nrow++ - 1; \ 271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 275a30f8f8cSSatish Balay rp[_i] = bcol; \ 276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 277a30f8f8cSSatish Balay b_noinsert:; \ 278a30f8f8cSSatish Balay bilen[brow] = nrow; \ 279a8f51744SPierre Jolivet } while (0) 280a30f8f8cSSatish Balay 281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 283a30f8f8cSSatish Balay */ 28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 285d71ae5a4SJacob Faibussowitsch { 286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 287a30f8f8cSSatish Balay MatScalar value; 288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2891302d50aSBarry Smith PetscInt i, j, row, col; 290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 293a30f8f8cSSatish Balay 294a30f8f8cSSatish Balay /* Some Variables required in the macro */ 295a30f8f8cSSatish Balay Mat A = baij->A; 29657508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 298a30f8f8cSSatish Balay MatScalar *aa = a->a; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay Mat B = baij->B; 30157508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 303a30f8f8cSSatish Balay MatScalar *ba = b->a; 304a30f8f8cSSatish Balay 3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 307a30f8f8cSSatish Balay MatScalar *ap, *bap; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay /* for stash */ 3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3110298fd71SBarry Smith MatScalar *v_loc = NULL; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314a30f8f8cSSatish Balay if (!baij->donotstash) { 31559ffdab8SBarry Smith if (n > baij->n_loc) { 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32026fbe8dcSKarl Rupp 32159ffdab8SBarry Smith baij->n_loc = n; 32259ffdab8SBarry Smith } 32359ffdab8SBarry Smith in_loc = baij->in_loc; 32459ffdab8SBarry Smith v_loc = baij->v_loc; 325a30f8f8cSSatish Balay } 326a30f8f8cSSatish Balay 327a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 328a30f8f8cSSatish Balay if (im[i] < 0) continue; 3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 332a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33401b2bd88SHong Zhang if (a->ignore_ltriangular) { 33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33626fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33701b2bd88SHong Zhang } 338a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 339a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3409371c9d4SSatish Balay brow = row / bs; 3419371c9d4SSatish Balay bcol = col / bs; 342a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 343db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 344db4deed7SKarl Rupp else value = v[i + j * m]; 345d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3469566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 347f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 348f7d195e4SLawrence Mitchell continue; 349f7d195e4SLawrence Mitchell } else { 350f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 351f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 352a30f8f8cSSatish Balay if (mat->was_assembled) { 35348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 354a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 355eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35671730473SSatish Balay col = col - 1; 357a30f8f8cSSatish Balay #else 35871730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 359a30f8f8cSSatish Balay #endif 360f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) { 3619566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 362a30f8f8cSSatish Balay col = in[j]; 363a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 364a30f8f8cSSatish Balay B = baij->B; 36557508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 3669371c9d4SSatish Balay bimax = b->imax; 3679371c9d4SSatish Balay bi = b->i; 3689371c9d4SSatish Balay bilen = b->ilen; 3699371c9d4SSatish Balay bj = b->j; 370a30f8f8cSSatish Balay ba = b->a; 37171730473SSatish Balay } else col += in[j] % bs; 372a30f8f8cSSatish Balay } else col = in[j]; 373db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 374db4deed7SKarl Rupp else value = v[i + j * m]; 375d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3769566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 377a30f8f8cSSatish Balay } 378a30f8f8cSSatish Balay } 379a30f8f8cSSatish Balay } else { /* off processor entry */ 3805f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 381a30f8f8cSSatish Balay if (!baij->donotstash) { 3825080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 383a30f8f8cSSatish Balay n_loc = 0; 384a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 385f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 386a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 387a30f8f8cSSatish Balay if (roworiented) { 388a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 389a30f8f8cSSatish Balay } else { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay n_loc++; 393a30f8f8cSSatish Balay } 3949566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 3983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay 401d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 402d71ae5a4SJacob Faibussowitsch { 40336bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40436bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40536bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40636bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40736bd2089SBarry Smith PetscBool roworiented = a->roworiented; 40836bd2089SBarry Smith const PetscScalar *value = v; 40936bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41036bd2089SBarry Smith 41136bd2089SBarry Smith PetscFunctionBegin; 41236bd2089SBarry Smith if (col < row) { 4133ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41536bd2089SBarry Smith } 41636bd2089SBarry Smith rp = aj + ai[row]; 41736bd2089SBarry Smith ap = aa + bs2 * ai[row]; 41836bd2089SBarry Smith rmax = imax[row]; 41936bd2089SBarry Smith nrow = ailen[row]; 42036bd2089SBarry Smith value = v; 42136bd2089SBarry Smith low = 0; 42236bd2089SBarry Smith high = nrow; 42336bd2089SBarry Smith 42436bd2089SBarry Smith while (high - low > 7) { 42536bd2089SBarry Smith t = (low + high) / 2; 42636bd2089SBarry Smith if (rp[t] > col) high = t; 42736bd2089SBarry Smith else low = t; 42836bd2089SBarry Smith } 42936bd2089SBarry Smith for (i = low; i < high; i++) { 43036bd2089SBarry Smith if (rp[i] > col) break; 43136bd2089SBarry Smith if (rp[i] == col) { 43236bd2089SBarry Smith bap = ap + bs2 * i; 43336bd2089SBarry Smith if (roworiented) { 43436bd2089SBarry Smith if (is == ADD_VALUES) { 43536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 436ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43736bd2089SBarry Smith } 43836bd2089SBarry Smith } else { 43936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 440ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44136bd2089SBarry Smith } 44236bd2089SBarry Smith } 44336bd2089SBarry Smith } else { 44436bd2089SBarry Smith if (is == ADD_VALUES) { 44536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 446ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44736bd2089SBarry Smith } 44836bd2089SBarry Smith } else { 44936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 450ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45136bd2089SBarry Smith } 45236bd2089SBarry Smith } 45336bd2089SBarry Smith } 45436bd2089SBarry Smith goto noinsert2; 45536bd2089SBarry Smith } 45636bd2089SBarry Smith } 45736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4585f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 45936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4609371c9d4SSatish Balay N = nrow++ - 1; 4619371c9d4SSatish Balay high++; 46236bd2089SBarry Smith /* shift up all the later entries in this row */ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46536bd2089SBarry Smith rp[i] = col; 46636bd2089SBarry Smith bap = ap + bs2 * i; 46736bd2089SBarry Smith if (roworiented) { 46836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 469ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } else { 47236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 473ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith noinsert2:; 47736bd2089SBarry Smith ailen[row] = nrow; 4783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47936bd2089SBarry Smith } 48036bd2089SBarry Smith 48136bd2089SBarry Smith /* 48236bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48336bd2089SBarry Smith */ 484d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 485d71ae5a4SJacob Faibussowitsch { 48636bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48736bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 48836bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 48936bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49036bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49136bd2089SBarry Smith const PetscScalar *value = v; 49236bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49336bd2089SBarry Smith 49436bd2089SBarry Smith PetscFunctionBegin; 49536bd2089SBarry Smith rp = aj + ai[row]; 49636bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49736bd2089SBarry Smith rmax = imax[row]; 49836bd2089SBarry Smith nrow = ailen[row]; 49936bd2089SBarry Smith low = 0; 50036bd2089SBarry Smith high = nrow; 50136bd2089SBarry Smith value = v; 50236bd2089SBarry Smith while (high - low > 7) { 50336bd2089SBarry Smith t = (low + high) / 2; 50436bd2089SBarry Smith if (rp[t] > col) high = t; 50536bd2089SBarry Smith else low = t; 50636bd2089SBarry Smith } 50736bd2089SBarry Smith for (i = low; i < high; i++) { 50836bd2089SBarry Smith if (rp[i] > col) break; 50936bd2089SBarry Smith if (rp[i] == col) { 51036bd2089SBarry Smith bap = ap + bs2 * i; 51136bd2089SBarry Smith if (roworiented) { 51236bd2089SBarry Smith if (is == ADD_VALUES) { 51336bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 514ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51536bd2089SBarry Smith } 51636bd2089SBarry Smith } else { 51736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 518ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 51936bd2089SBarry Smith } 52036bd2089SBarry Smith } 52136bd2089SBarry Smith } else { 52236bd2089SBarry Smith if (is == ADD_VALUES) { 52336bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 524ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52536bd2089SBarry Smith bap += bs; 52636bd2089SBarry Smith } 52736bd2089SBarry Smith } else { 52836bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 529ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53036bd2089SBarry Smith bap += bs; 53136bd2089SBarry Smith } 53236bd2089SBarry Smith } 53336bd2089SBarry Smith } 53436bd2089SBarry Smith goto noinsert2; 53536bd2089SBarry Smith } 53636bd2089SBarry Smith } 53736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5385f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 53936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5409371c9d4SSatish Balay N = nrow++ - 1; 5419371c9d4SSatish Balay high++; 54236bd2089SBarry Smith /* shift up all the later entries in this row */ 5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5449566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54536bd2089SBarry Smith rp[i] = col; 54636bd2089SBarry Smith bap = ap + bs2 * i; 54736bd2089SBarry Smith if (roworiented) { 54836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 549ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55036bd2089SBarry Smith } 55136bd2089SBarry Smith } else { 55236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 553ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55436bd2089SBarry Smith } 55536bd2089SBarry Smith } 55636bd2089SBarry Smith noinsert2:; 55736bd2089SBarry Smith ailen[row] = nrow; 5583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55936bd2089SBarry Smith } 56036bd2089SBarry Smith 56136bd2089SBarry Smith /* 56236bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56336bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56436bd2089SBarry Smith */ 56566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 566d71ae5a4SJacob Faibussowitsch { 5670880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 568f15d580aSBarry Smith const MatScalar *value; 569f15d580aSBarry Smith MatScalar *barray = baij->barray; 570ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 571899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 572476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 573476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5740880e062SHong Zhang 575a30f8f8cSSatish Balay PetscFunctionBegin; 5760880e062SHong Zhang if (!barray) { 5779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5780880e062SHong Zhang baij->barray = barray; 5790880e062SHong Zhang } 5800880e062SHong Zhang 5810880e062SHong Zhang if (roworiented) { 5820880e062SHong Zhang stepval = (n - 1) * bs; 5830880e062SHong Zhang } else { 5840880e062SHong Zhang stepval = (m - 1) * bs; 5850880e062SHong Zhang } 5860880e062SHong Zhang for (i = 0; i < m; i++) { 5870880e062SHong Zhang if (im[i] < 0) continue; 5886bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5890880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5900880e062SHong Zhang row = im[i] - rstart; 5910880e062SHong Zhang for (j = 0; j < n; j++) { 592f3f98c53SJed Brown if (im[i] > in[j]) { 593f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 594e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 595f3f98c53SJed Brown } 5960880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5970880e062SHong Zhang if ((roworiented) && (n == 1)) { 598f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 5990880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6010880e062SHong Zhang } else { /* Here a copy is required */ 6020880e062SHong Zhang if (roworiented) { 6030880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6040880e062SHong Zhang } else { 6050880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6060880e062SHong Zhang } 6070880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 608ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6090880e062SHong Zhang } 6100880e062SHong Zhang barray -= bs2; 6110880e062SHong Zhang } 6120880e062SHong Zhang 6130880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6140880e062SHong Zhang col = in[j] - cstart; 6159566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 616f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 617f7d195e4SLawrence Mitchell continue; 618f7d195e4SLawrence Mitchell } else { 619f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6200880e062SHong Zhang if (mat->was_assembled) { 62148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6220880e062SHong Zhang 6230880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 624eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 625b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 6260880e062SHong Zhang #else 627b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 6280880e062SHong Zhang #endif 629f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 6309566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6310880e062SHong Zhang col = in[j]; 6320880e062SHong Zhang } 63326fbe8dcSKarl Rupp } else col = in[j]; 6349566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6350880e062SHong Zhang } 6360880e062SHong Zhang } 6370880e062SHong Zhang } else { 6385f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6390880e062SHong Zhang if (!baij->donotstash) { 6400880e062SHong Zhang if (roworiented) { 6419566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6420880e062SHong Zhang } else { 6439566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6440880e062SHong Zhang } 6450880e062SHong Zhang } 6460880e062SHong Zhang } 6470880e062SHong Zhang } 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 65166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 652d71ae5a4SJacob Faibussowitsch { 653f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 654d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 655d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 656a30f8f8cSSatish Balay 657a30f8f8cSSatish Balay PetscFunctionBegin; 658a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 65954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 661a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 662a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 663a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 66454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 666a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 667a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6689566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 669a30f8f8cSSatish Balay } else { 67048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 671a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 672eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 673a30f8f8cSSatish Balay data--; 674a30f8f8cSSatish Balay #else 675a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 676a30f8f8cSSatish Balay #endif 677a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 678a30f8f8cSSatish Balay else { 679a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6809566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 681a30f8f8cSSatish Balay } 682a30f8f8cSSatish Balay } 683a30f8f8cSSatish Balay } 684f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 685a30f8f8cSSatish Balay } 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay 68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 690d71ae5a4SJacob Faibussowitsch { 691a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 692a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 693a30f8f8cSSatish Balay 694a30f8f8cSSatish Balay PetscFunctionBegin; 695a30f8f8cSSatish Balay if (baij->size == 1) { 6969566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 697a30f8f8cSSatish Balay } else { 698a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 6999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7019371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7029371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7039566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7049371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7059371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 706462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7078f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7090b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7100b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7110b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 7120b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 713899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 714d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7150b8dc8d2SHong Zhang MatScalar *v; 7166497c311SBarry Smith PetscMPIInt iN; 7170b8dc8d2SHong Zhang 7189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 7199566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7200b8dc8d2SHong Zhang /* Amat */ 7219371c9d4SSatish Balay v = amat->a; 7229371c9d4SSatish Balay jj = amat->j; 7230b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7240b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7250b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7260b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7279371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7289371c9d4SSatish Balay jj++; 7290b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7300b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7319371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7329371c9d4SSatish Balay v++; 7330b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7340b8dc8d2SHong Zhang /* non-diagonal block */ 7350b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7360b8dc8d2SHong Zhang } 7370b8dc8d2SHong Zhang } 7380b8dc8d2SHong Zhang } 7399566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7400b8dc8d2SHong Zhang } 7410b8dc8d2SHong Zhang /* Bmat */ 7429371c9d4SSatish Balay v = bmat->a; 7439371c9d4SSatish Balay jj = bmat->j; 7440b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7450b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7460b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7470b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7489371c9d4SSatish Balay gcol = bs * garray[*jj]; 7499371c9d4SSatish Balay jj++; 7500b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7510b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7529371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7539371c9d4SSatish Balay v++; 7540b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7550b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7560b8dc8d2SHong Zhang } 7570b8dc8d2SHong Zhang } 7580b8dc8d2SHong Zhang } 7599566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7600b8dc8d2SHong Zhang } 7616497c311SBarry Smith PetscCall(PetscMPIIntCast(mat->cmap->N, &iN)); 762462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(rsum, rsum2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7630b8dc8d2SHong Zhang *norm = 0.0; 764d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7650b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7660b8dc8d2SHong Zhang } 7679566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 768f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 769a30f8f8cSSatish Balay } 7703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay 77366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 774d71ae5a4SJacob Faibussowitsch { 775a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7761302d50aSBarry Smith PetscInt nstash, reallocs; 777a30f8f8cSSatish Balay 778a30f8f8cSSatish Balay PetscFunctionBegin; 7793ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 780a30f8f8cSSatish Balay 7819566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7829566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7839566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7849566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7859566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 788a30f8f8cSSatish Balay } 789a30f8f8cSSatish Balay 79066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 791d71ae5a4SJacob Faibussowitsch { 792a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 793a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 79413f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 795e44c0bd4SBarry Smith PetscInt *row, *col; 796ace3abfcSBarry Smith PetscBool other_disassembled; 79713f74950SBarry Smith PetscMPIInt n; 798ace3abfcSBarry Smith PetscBool r1, r2, r3; 799a30f8f8cSSatish Balay MatScalar *val; 800a30f8f8cSSatish Balay 80191c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 802a30f8f8cSSatish Balay PetscFunctionBegin; 8034cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 804a30f8f8cSSatish Balay while (1) { 8059566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 806a30f8f8cSSatish Balay if (!flg) break; 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay for (i = 0; i < n;) { 809a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 81026fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 81126fbe8dcSKarl Rupp if (row[j] != rstart) break; 81226fbe8dcSKarl Rupp } 813a30f8f8cSSatish Balay if (j < n) ncols = j - i; 814a30f8f8cSSatish Balay else ncols = n - i; 815a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8169566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 817a30f8f8cSSatish Balay i = j; 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay } 8209566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 821a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 8225e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 823a30f8f8cSSatish Balay restore the original flags */ 824a30f8f8cSSatish Balay r1 = baij->roworiented; 825a30f8f8cSSatish Balay r2 = a->roworiented; 82691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 82726fbe8dcSKarl Rupp 828a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 829a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 83026fbe8dcSKarl Rupp 83191c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 832a30f8f8cSSatish Balay while (1) { 8339566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 834a30f8f8cSSatish Balay if (!flg) break; 835a30f8f8cSSatish Balay 836a30f8f8cSSatish Balay for (i = 0; i < n;) { 837a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 83826fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 83926fbe8dcSKarl Rupp if (row[j] != rstart) break; 84026fbe8dcSKarl Rupp } 841a30f8f8cSSatish Balay if (j < n) ncols = j - i; 842a30f8f8cSSatish Balay else ncols = n - i; 8439566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 844a30f8f8cSSatish Balay i = j; 845a30f8f8cSSatish Balay } 846a30f8f8cSSatish Balay } 8479566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 84826fbe8dcSKarl Rupp 849a30f8f8cSSatish Balay baij->roworiented = r1; 850a30f8f8cSSatish Balay a->roworiented = r2; 85126fbe8dcSKarl Rupp 85291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 853a30f8f8cSSatish Balay } 854a30f8f8cSSatish Balay 8559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 857a30f8f8cSSatish Balay 858a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8596aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 860a30f8f8cSSatish Balay /* 861a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 862a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 863a30f8f8cSSatish Balay */ 864a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 865462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 86648a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 867a30f8f8cSSatish Balay } 868a30f8f8cSSatish Balay 8699371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 872a30f8f8cSSatish Balay 8739566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 87426fbe8dcSKarl Rupp 875f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8764f9cfa9eSBarry Smith 8774f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 878f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 879e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 880462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 881e56f5c9eSBarry Smith } 8823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 883a30f8f8cSSatish Balay } 884a30f8f8cSSatish Balay 885dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8869804daf3SBarry Smith #include <petscdraw.h> 887d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 888d71ae5a4SJacob Faibussowitsch { 889a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 890d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8917da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 892ace3abfcSBarry Smith PetscBool iascii, isdraw; 893b0a32e0cSBarry Smith PetscViewer sviewer; 894f3ef73ceSBarry Smith PetscViewerFormat format; 895a30f8f8cSSatish Balay 896a30f8f8cSSatish Balay PetscFunctionBegin; 8979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 89932077d6dSBarry Smith if (iascii) { 9009566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 901456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 902a30f8f8cSSatish Balay MatInfo info; 9039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9049566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9069371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9079371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9129566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9159566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 920c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay } 924a30f8f8cSSatish Balay 925a30f8f8cSSatish Balay if (isdraw) { 926b0a32e0cSBarry Smith PetscDraw draw; 927ace3abfcSBarry Smith PetscBool isnull; 9289566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9299566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9303ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 931a30f8f8cSSatish Balay } 932a30f8f8cSSatish Balay 9337da1fb6eSBarry Smith { 934a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 935a30f8f8cSSatish Balay Mat A; 93665d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 93765d70643SHong Zhang Mat_SeqBAIJ *Bloc; 938d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 939a30f8f8cSSatish Balay MatScalar *a; 9403e219373SBarry Smith const char *matname; 941a30f8f8cSSatish Balay 942f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9439566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 944dd400576SPatrick Sanan if (rank == 0) { 9459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 946a30f8f8cSSatish Balay } else { 9479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 948a30f8f8cSSatish Balay } 9499566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9509566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9519566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 952a30f8f8cSSatish Balay 953a30f8f8cSSatish Balay /* copy over the A part */ 95465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9559371c9d4SSatish Balay ai = Aloc->i; 9569371c9d4SSatish Balay aj = Aloc->j; 9579371c9d4SSatish Balay a = Aloc->a; 9589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 959a30f8f8cSSatish Balay 960a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 961e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 96226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 963a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 964e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 965a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9669566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 96726fbe8dcSKarl Rupp col++; 96826fbe8dcSKarl Rupp a += bs; 969a30f8f8cSSatish Balay } 970a30f8f8cSSatish Balay } 971a30f8f8cSSatish Balay } 972a30f8f8cSSatish Balay /* copy over the B part */ 97365d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9749371c9d4SSatish Balay ai = Bloc->i; 9759371c9d4SSatish Balay aj = Bloc->j; 9769371c9d4SSatish Balay a = Bloc->a; 977a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 978e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97926fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 980a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 981a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 982a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9839566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 98426fbe8dcSKarl Rupp col++; 98526fbe8dcSKarl Rupp a += bs; 986a30f8f8cSSatish Balay } 987a30f8f8cSSatish Balay } 988a30f8f8cSSatish Balay } 9899566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 9909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 992a30f8f8cSSatish Balay /* 993a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 994b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 995a30f8f8cSSatish Balay */ 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 99723a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 998dd400576SPatrick Sanan if (rank == 0) { 999f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname)); 1000f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer)); 1001a30f8f8cSSatish Balay } 10029566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1004a30f8f8cSSatish Balay } 10053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1006a30f8f8cSSatish Balay } 1007a30f8f8cSSatish Balay 1008618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1009618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1010d1654148SHong Zhang 101166976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1012d71ae5a4SJacob Faibussowitsch { 1013ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1014a30f8f8cSSatish Balay 1015a30f8f8cSSatish Balay PetscFunctionBegin; 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1020d1654148SHong Zhang if (iascii || isdraw || issocket) { 10219566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10221baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1024a30f8f8cSSatish Balay } 1025a30f8f8cSSatish Balay 1026789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX) 1027789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1028d71ae5a4SJacob Faibussowitsch { 1029547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1030eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10316de40e93SBarry Smith PetscScalar *from; 10326de40e93SBarry Smith const PetscScalar *x; 1033547795f9SHong Zhang 1034547795f9SHong Zhang PetscFunctionBegin; 1035547795f9SHong Zhang /* diagonal part */ 10369566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1037629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1038629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1039629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1040547795f9SHong Zhang 1041547795f9SHong Zhang /* subdiagonal part */ 10425f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1044547795f9SHong Zhang 1045547795f9SHong Zhang /* copy x into the vec slvec0 */ 10469566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10479566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1048547795f9SHong Zhang 10499566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1052547795f9SHong Zhang 10539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1055547795f9SHong Zhang /* supperdiagonal part */ 10569566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1058547795f9SHong Zhang } 1059789afff4SPierre Jolivet #endif 1060547795f9SHong Zhang 106166976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1062d71ae5a4SJacob Faibussowitsch { 1063a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1064eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1065d9ca1df4SBarry Smith PetscScalar *from; 1066d9ca1df4SBarry Smith const PetscScalar *x; 1067a9d4b620SHong Zhang 1068a9d4b620SHong Zhang PetscFunctionBegin; 1069a9d4b620SHong Zhang /* diagonal part */ 10709566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1071629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1072629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1073629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1074a9d4b620SHong Zhang 1075a9d4b620SHong Zhang /* subdiagonal part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1077fc165ae2SBarry Smith 1078a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10799566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1081a9d4b620SHong Zhang 10829566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1085fc165ae2SBarry Smith 10869566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10879566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1088a9d4b620SHong Zhang /* supperdiagonal part */ 10899566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1091a9d4b620SHong Zhang } 1092a9d4b620SHong Zhang 109366976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 109466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1095d71ae5a4SJacob Faibussowitsch { 1096eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1097eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1098629a200eSBarry Smith PetscScalar *from; 1099eb1ec7c1SStefano Zampini const PetscScalar *x; 1100eb1ec7c1SStefano Zampini 1101eb1ec7c1SStefano Zampini PetscFunctionBegin; 1102eb1ec7c1SStefano Zampini /* diagonal part */ 11039566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1104629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1105629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1106eb1ec7c1SStefano Zampini 1107eb1ec7c1SStefano Zampini /* subdiagonal part */ 11085f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11099566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1110eb1ec7c1SStefano Zampini 1111eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11129566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11159566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1116eb1ec7c1SStefano Zampini 11179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1120eb1ec7c1SStefano Zampini 1121eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11229566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1124eb1ec7c1SStefano Zampini } 112566976f2fSJacob Faibussowitsch #endif 1126eb1ec7c1SStefano Zampini 112766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1128d71ae5a4SJacob Faibussowitsch { 1129de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1130d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1131629a200eSBarry Smith PetscScalar *from; 1132d9ca1df4SBarry Smith const PetscScalar *x; 1133a9d4b620SHong Zhang 1134a9d4b620SHong Zhang PetscFunctionBegin; 1135a9d4b620SHong Zhang /* diagonal part */ 11369566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1137629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1138629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1139a9d4b620SHong Zhang 1140a9d4b620SHong Zhang /* subdiagonal part */ 11419566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1142a9d4b620SHong Zhang 1143a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11449566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1148a9d4b620SHong Zhang 11499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1152a9d4b620SHong Zhang 1153a9d4b620SHong Zhang /* supperdiagonal part */ 11549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1156a9d4b620SHong Zhang } 1157a9d4b620SHong Zhang 1158a30f8f8cSSatish Balay /* 1159a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1160a30f8f8cSSatish Balay diagonal block 1161a30f8f8cSSatish Balay */ 116266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1163d71ae5a4SJacob Faibussowitsch { 1164a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1165a30f8f8cSSatish Balay 1166a30f8f8cSSatish Balay PetscFunctionBegin; 116708401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11689566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1170a30f8f8cSSatish Balay } 1171a30f8f8cSSatish Balay 117266976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1173d71ae5a4SJacob Faibussowitsch { 1174a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1175a30f8f8cSSatish Balay 1176a30f8f8cSSatish Balay PetscFunctionBegin; 11779566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11789566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1180a30f8f8cSSatish Balay } 1181a30f8f8cSSatish Balay 118266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1183d71ae5a4SJacob Faibussowitsch { 1184d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1185d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1186d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1187d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1188899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1189d0d4cfc2SHong Zhang 1190a30f8f8cSSatish Balay PetscFunctionBegin; 11915f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1192d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1193d0d4cfc2SHong Zhang 1194d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1195d0d4cfc2SHong Zhang /* 1196d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1197d0d4cfc2SHong Zhang */ 1198d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1199d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1200d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1201d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1202d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 120326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1204d0d4cfc2SHong Zhang } 12059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1206d0d4cfc2SHong Zhang } 1207d0d4cfc2SHong Zhang 12085f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1209d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1210d0d4cfc2SHong Zhang 12119371c9d4SSatish Balay pvA = &vworkA; 12129371c9d4SSatish Balay pcA = &cworkA; 12139371c9d4SSatish Balay pvB = &vworkB; 12149371c9d4SSatish Balay pcB = &cworkB; 12159371c9d4SSatish Balay if (!v) { 12169371c9d4SSatish Balay pvA = NULL; 12179371c9d4SSatish Balay pvB = NULL; 12189371c9d4SSatish Balay } 12199371c9d4SSatish Balay if (!idx) { 12209371c9d4SSatish Balay pcA = NULL; 12219371c9d4SSatish Balay if (!v) pcB = NULL; 12229371c9d4SSatish Balay } 12239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12249566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1225d0d4cfc2SHong Zhang nztot = nzA + nzB; 1226d0d4cfc2SHong Zhang 1227d0d4cfc2SHong Zhang cmap = mat->garray; 1228d0d4cfc2SHong Zhang if (v || idx) { 1229d0d4cfc2SHong Zhang if (nztot) { 1230d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1231d0d4cfc2SHong Zhang PetscInt imark = -1; 1232d0d4cfc2SHong Zhang if (v) { 1233d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1234d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1235d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1236d0d4cfc2SHong Zhang else break; 1237d0d4cfc2SHong Zhang } 1238d0d4cfc2SHong Zhang imark = i; 1239d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1240d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1241d0d4cfc2SHong Zhang } 1242d0d4cfc2SHong Zhang if (idx) { 1243d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1244d0d4cfc2SHong Zhang if (imark > -1) { 1245ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1246d0d4cfc2SHong Zhang } else { 1247d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 124826fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1249d0d4cfc2SHong Zhang else break; 1250d0d4cfc2SHong Zhang } 1251d0d4cfc2SHong Zhang imark = i; 1252d0d4cfc2SHong Zhang } 1253d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1254d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1255d0d4cfc2SHong Zhang } 1256d0d4cfc2SHong Zhang } else { 1257f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1258f4259b30SLisandro Dalcin if (v) *v = NULL; 1259d0d4cfc2SHong Zhang } 1260d0d4cfc2SHong Zhang } 1261d0d4cfc2SHong Zhang *nz = nztot; 12629566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12639566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1265a30f8f8cSSatish Balay } 1266a30f8f8cSSatish Balay 126766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1268d71ae5a4SJacob Faibussowitsch { 1269a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1270a30f8f8cSSatish Balay 1271a30f8f8cSSatish Balay PetscFunctionBegin; 12725f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1273a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1275a30f8f8cSSatish Balay } 1276a30f8f8cSSatish Balay 127766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1278d71ae5a4SJacob Faibussowitsch { 1279d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1280d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1281d0d4cfc2SHong Zhang 1282d0d4cfc2SHong Zhang PetscFunctionBegin; 1283d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1285d0d4cfc2SHong Zhang } 128666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1287d71ae5a4SJacob Faibussowitsch { 1288d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1289d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1290d0d4cfc2SHong Zhang 1291d0d4cfc2SHong Zhang PetscFunctionBegin; 1292d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 12933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1294d0d4cfc2SHong Zhang } 1295d0d4cfc2SHong Zhang 129666976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1297d71ae5a4SJacob Faibussowitsch { 12985f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 12995f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13002726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 13012726fb6dSPierre Jolivet 13029566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13039566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13045f80ce2aSJacob Faibussowitsch } 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13062726fb6dSPierre Jolivet } 13072726fb6dSPierre Jolivet 130866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1309d71ae5a4SJacob Faibussowitsch { 131099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 131199cafbc1SBarry Smith 131299cafbc1SBarry Smith PetscFunctionBegin; 13139566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13149566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131699cafbc1SBarry Smith } 131799cafbc1SBarry Smith 131866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1319d71ae5a4SJacob Faibussowitsch { 132099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 132199cafbc1SBarry Smith 132299cafbc1SBarry Smith PetscFunctionBegin; 13239566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13249566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132699cafbc1SBarry Smith } 132799cafbc1SBarry Smith 13287dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 132936032a97SHong Zhang Input: isrow - distributed(parallel), 133036032a97SHong Zhang iscol_local - locally owned (seq) 133136032a97SHong Zhang */ 133266976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1333d71ae5a4SJacob Faibussowitsch { 13348f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13358f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 133636032a97SHong Zhang 133736032a97SHong Zhang PetscFunctionBegin; 133866976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13399566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 134166976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13428f46ffcaSHong Zhang 13439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13449566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13458f46ffcaSHong Zhang 13469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13489566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13499566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13509566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13519566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13528f46ffcaSHong Zhang 13538f46ffcaSHong Zhang nmatch = 0; 13548f46ffcaSHong Zhang k = 0; 13558f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13568f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13578f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13589371c9d4SSatish Balay k = j; 13599371c9d4SSatish Balay nmatch++; 13608f46ffcaSHong Zhang break; 13618f46ffcaSHong Zhang } 13628f46ffcaSHong Zhang } 13638f46ffcaSHong Zhang } 13649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13659566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13669566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13679566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13681098a8e8SHong Zhang if (nmatch < sz1) { 13691098a8e8SHong Zhang *flg = PETSC_FALSE; 13701098a8e8SHong Zhang } else { 13711098a8e8SHong Zhang *flg = PETSC_TRUE; 13721098a8e8SHong Zhang } 13733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13748f46ffcaSHong Zhang } 137536032a97SHong Zhang 137666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1377d71ae5a4SJacob Faibussowitsch { 1378fdfbdca6SPierre Jolivet Mat C[2]; 1379fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1380fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1381fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 138236032a97SHong Zhang 138336032a97SHong Zhang PetscFunctionBegin; 13849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1385fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 138636032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13885f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 138936032a97SHong Zhang } else { 13909566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 13919566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1392fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 13938f46ffcaSHong Zhang } 1394fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1395fdfbdca6SPierre Jolivet if (!isequal) { 1396fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1397fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1398fdfbdca6SPierre Jolivet if (!isidentity) { 1399fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1400fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1401fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1402fdfbdca6SPierre Jolivet } else { 1403fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1404fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1405fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1406fdfbdca6SPierre Jolivet } 1407fdfbdca6SPierre Jolivet } 1408fdfbdca6SPierre Jolivet } 14097dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1410fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1411fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14128f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1413fdfbdca6SPierre Jolivet IS intersect; 1414fdfbdca6SPierre Jolivet PetscInt ni; 1415fdfbdca6SPierre Jolivet 1416fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1417fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1418fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1419fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1420fdfbdca6SPierre Jolivet } 1421fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1422fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1423fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1424fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1425fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1426fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1427fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1428fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1429fdfbdca6SPierre Jolivet } 1430fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1431fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1432fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1433fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1434fdfbdca6SPierre Jolivet } 14359566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14378f46ffcaSHong Zhang } 14383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14398f46ffcaSHong Zhang } 14408f46ffcaSHong Zhang 144166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1442d71ae5a4SJacob Faibussowitsch { 1443a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1444a30f8f8cSSatish Balay 1445a30f8f8cSSatish Balay PetscFunctionBegin; 14469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14479566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1449a30f8f8cSSatish Balay } 1450a30f8f8cSSatish Balay 145166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1452d71ae5a4SJacob Faibussowitsch { 1453a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1454a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14553966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1456a30f8f8cSSatish Balay 1457a30f8f8cSSatish Balay PetscFunctionBegin; 1458d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 145926fbe8dcSKarl Rupp 14609566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 146126fbe8dcSKarl Rupp 14629371c9d4SSatish Balay isend[0] = info->nz_used; 14639371c9d4SSatish Balay isend[1] = info->nz_allocated; 14649371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14659371c9d4SSatish Balay isend[3] = info->memory; 14669371c9d4SSatish Balay isend[4] = info->mallocs; 146726fbe8dcSKarl Rupp 14689566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 146926fbe8dcSKarl Rupp 14709371c9d4SSatish Balay isend[0] += info->nz_used; 14719371c9d4SSatish Balay isend[1] += info->nz_allocated; 14729371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14739371c9d4SSatish Balay isend[3] += info->memory; 14749371c9d4SSatish Balay isend[4] += info->mallocs; 1475a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1476a30f8f8cSSatish Balay info->nz_used = isend[0]; 1477a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1478a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1479a30f8f8cSSatish Balay info->memory = isend[3]; 1480a30f8f8cSSatish Balay info->mallocs = isend[4]; 1481a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1482462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 148326fbe8dcSKarl Rupp 1484a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1485a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1486a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1487a30f8f8cSSatish Balay info->memory = irecv[3]; 1488a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1489a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1490462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 149126fbe8dcSKarl Rupp 1492a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1493a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1494a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1495a30f8f8cSSatish Balay info->memory = irecv[3]; 1496a30f8f8cSSatish Balay info->mallocs = irecv[4]; 149798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1498a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1499a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1500a30f8f8cSSatish Balay info->factor_mallocs = 0; 15013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1502a30f8f8cSSatish Balay } 1503a30f8f8cSSatish Balay 150466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1505d71ae5a4SJacob Faibussowitsch { 1506a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1507d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1508a30f8f8cSSatish Balay 1509a30f8f8cSSatish Balay PetscFunctionBegin; 1510e98b92d7SKris Buschelman switch (op) { 1511512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1512e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 151328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1514a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1515e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 151643674050SBarry Smith MatCheckPreallocated(A, 1); 15179566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15189566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1519e98b92d7SKris Buschelman break; 1520e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 152143674050SBarry Smith MatCheckPreallocated(A, 1); 15224e0d8c25SBarry Smith a->roworiented = flg; 152326fbe8dcSKarl Rupp 15249566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15259566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1526e98b92d7SKris Buschelman break; 15278c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1528d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1529*9725ddffSPierre Jolivet case MAT_SUBMAT_SINGLEIS: 1530d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1531d71ae5a4SJacob Faibussowitsch break; 1532d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1533d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1534d71ae5a4SJacob Faibussowitsch break; 1535d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1536d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1537d71ae5a4SJacob Faibussowitsch break; 1538d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1539*9725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 15400f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1541eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1542547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1543eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1544eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1545eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1546b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1547eb1ec7c1SStefano Zampini } 15480f2140c7SStefano Zampini #endif 1549eeffb40dSHong Zhang break; 1550ffa07934SHong Zhang case MAT_SPD: 1551d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1552*9725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1553eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1554eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1555eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1556eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1557eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1558eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1559eb1ec7c1SStefano Zampini } 1560eb1ec7c1SStefano Zampini #endif 1561eeffb40dSHong Zhang break; 156277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1563*9725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 1564eeffb40dSHong Zhang break; 15659a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1566b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15675f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15689566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 156977e54ba9SKris Buschelman break; 1570d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1571d71ae5a4SJacob Faibussowitsch break; 1572d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1573d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1574d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1575d71ae5a4SJacob Faibussowitsch break; 1576d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1577d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1578d71ae5a4SJacob Faibussowitsch break; 1579d71ae5a4SJacob Faibussowitsch default: 1580d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1581a30f8f8cSSatish Balay } 15823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1583a30f8f8cSSatish Balay } 1584a30f8f8cSSatish Balay 158566976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1586d71ae5a4SJacob Faibussowitsch { 1587a30f8f8cSSatish Balay PetscFunctionBegin; 15887fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1589cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 15909566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1591cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 15929566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1593fc4dec0aSBarry Smith } 15943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1595a30f8f8cSSatish Balay } 1596a30f8f8cSSatish Balay 159766976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1598d71ae5a4SJacob Faibussowitsch { 1599a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1600a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 16015e90f9d9SHong Zhang PetscInt nv, m, n; 1602ace3abfcSBarry Smith PetscBool flg; 1603a30f8f8cSSatish Balay 1604a30f8f8cSSatish Balay PetscFunctionBegin; 1605a30f8f8cSSatish Balay if (ll != rr) { 16069566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 16075f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1608a30f8f8cSSatish Balay } 16093ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1610b3bf805bSHong Zhang 16119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 16125f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1613b3bf805bSHong Zhang 16149566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 16155f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 16165e90f9d9SHong Zhang 16179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16185e90f9d9SHong Zhang 16195e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1620dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16215e90f9d9SHong Zhang 16225e90f9d9SHong Zhang /* scale the diagonal part */ 1623dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1624a30f8f8cSSatish Balay 16255e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16269566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1627dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1629a30f8f8cSSatish Balay } 1630a30f8f8cSSatish Balay 163166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1632d71ae5a4SJacob Faibussowitsch { 1633f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1634a30f8f8cSSatish Balay 1635a30f8f8cSSatish Balay PetscFunctionBegin; 16369566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1638a30f8f8cSSatish Balay } 1639a30f8f8cSSatish Balay 16406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1641a30f8f8cSSatish Balay 164266976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1643d71ae5a4SJacob Faibussowitsch { 1644a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1645a30f8f8cSSatish Balay Mat a, b, c, d; 1646ace3abfcSBarry Smith PetscBool flg; 1647a30f8f8cSSatish Balay 1648a30f8f8cSSatish Balay PetscFunctionBegin; 16499371c9d4SSatish Balay a = matA->A; 16509371c9d4SSatish Balay b = matA->B; 16519371c9d4SSatish Balay c = matB->A; 16529371c9d4SSatish Balay d = matB->B; 1653a30f8f8cSSatish Balay 16549566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 165548a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1656462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1658a30f8f8cSSatish Balay } 1659a30f8f8cSSatish Balay 166066976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1661d71ae5a4SJacob Faibussowitsch { 16624c7a3774SStefano Zampini PetscBool isbaij; 16633c896bc6SHong Zhang 16643c896bc6SHong Zhang PetscFunctionBegin; 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16665f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16673c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16683c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16699566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16709566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16719566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16723c896bc6SHong Zhang } else { 16734c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16744c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16754c7a3774SStefano Zampini 16769566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16779566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16783c896bc6SHong Zhang } 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16813c896bc6SHong Zhang } 16823c896bc6SHong Zhang 168366976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1684d71ae5a4SJacob Faibussowitsch { 16854fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 16864fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 16874fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 16884fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 16894fe895cdSHong Zhang 16904fe895cdSHong Zhang PetscFunctionBegin; 16914fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16924fe895cdSHong Zhang PetscScalar alpha = a; 16934fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 16944fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 16959566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1696792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 16974fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 16984fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 16999566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1700792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1702ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 17039566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 17049566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 17059566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 17064fe895cdSHong Zhang } else { 17074de5dceeSHong Zhang Mat B; 17084de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 17095f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 17109566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 17119566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 17129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 17139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 17149566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 17169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17179566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17189566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17199566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17209566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17219566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17229566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17239566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17249566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17259566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17269566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17279566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17284fe895cdSHong Zhang } 17293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17304fe895cdSHong Zhang } 17314fe895cdSHong Zhang 173266976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1733d71ae5a4SJacob Faibussowitsch { 17341302d50aSBarry Smith PetscInt i; 1735afebec48SHong Zhang PetscBool flg; 1736a5e6ed63SBarry Smith 17376849ba73SBarry Smith PetscFunctionBegin; 17389566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1739a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17409566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 174148a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17424dcd73b1SHong Zhang } 17433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1744a5e6ed63SBarry Smith } 1745a5e6ed63SBarry Smith 174666976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1747d71ae5a4SJacob Faibussowitsch { 17487d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17496f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17507d68702bSBarry Smith 17517d68702bSBarry Smith PetscFunctionBegin; 17526f33a894SBarry Smith if (!Y->preallocated) { 17539566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17546f33a894SBarry Smith } else if (!aij->nz) { 1755b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17569566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1757b83222d8SBarry Smith aij->nonew = nonew; 17587d68702bSBarry Smith } 17599566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17617d68702bSBarry Smith } 17627d68702bSBarry Smith 176366976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1764d71ae5a4SJacob Faibussowitsch { 17653b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17663b49f96aSBarry Smith 17673b49f96aSBarry Smith PetscFunctionBegin; 17685f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17699566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17703b49f96aSBarry Smith if (d) { 17713b49f96aSBarry Smith PetscInt rstart; 17729566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17733b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17743b49f96aSBarry Smith } 17753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17763b49f96aSBarry Smith } 17773b49f96aSBarry Smith 177866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1779d71ae5a4SJacob Faibussowitsch { 1780a5b7ff6bSBarry Smith PetscFunctionBegin; 1781a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1783a5b7ff6bSBarry Smith } 17843b49f96aSBarry Smith 178517ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 178617ea310bSPierre Jolivet { 178717ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 178817ea310bSPierre Jolivet 178917ea310bSPierre Jolivet PetscFunctionBegin; 179017ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 179117ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 179217ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 179317ea310bSPierre Jolivet } 179417ea310bSPierre Jolivet 17956cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer); 1796789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]); 1797789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 17986cff0a6bSPierre Jolivet 17993964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1800a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1801a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1802a9d4b620SHong Zhang MatMult_MPISBAIJ, 180397304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1804431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1805431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin /* 10*/ NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 181241f059aeSBarry Smith MatSOR_MPISBAIJ, 1813a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 181497304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1815a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1816a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1817a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1818a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 181997304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1820a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1821a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1822a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1823f4259b30SLisandro Dalcin /* 24*/ NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 182826cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 1831a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1832f4259b30SLisandro Dalcin NULL, 1833d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18397dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1840d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1841a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18423c896bc6SHong Zhang MatCopy_MPISBAIJ, 1843f4259b30SLisandro Dalcin /* 44*/ NULL, 1844a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18457d68702bSBarry Smith MatShift_MPISBAIJ, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin /* 49*/ NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin /* 54*/ NULL, 1854f4259b30SLisandro Dalcin NULL, 1855a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1856f4259b30SLisandro Dalcin NULL, 1857a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18587dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin /* 64*/ NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1869f4259b30SLisandro Dalcin NULL, 187028d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin /* 74*/ NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin /* 79*/ NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 18825bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1883f4259b30SLisandro Dalcin /* 84*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin /* 89*/ NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin /* 94*/ NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin /* 99*/ NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 19012726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin /*104*/ NULL, 190499cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1905d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1906d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 190795936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1908f4259b30SLisandro Dalcin /*109*/ NULL, 1909f4259b30SLisandro Dalcin NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 19123b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1913f4259b30SLisandro Dalcin /*114*/ NULL, 1914f4259b30SLisandro Dalcin NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 1917f4259b30SLisandro Dalcin NULL, 1918f4259b30SLisandro Dalcin /*119*/ NULL, 1919f4259b30SLisandro Dalcin NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 1922f4259b30SLisandro Dalcin NULL, 1923f4259b30SLisandro Dalcin /*124*/ NULL, 1924f4259b30SLisandro Dalcin NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin /*129*/ NULL, 1929f4259b30SLisandro Dalcin NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin /*134*/ NULL, 1934f4259b30SLisandro Dalcin NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin NULL, 1937f4259b30SLisandro Dalcin NULL, 193846533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1939f4259b30SLisandro Dalcin NULL, 1940f4259b30SLisandro Dalcin NULL, 1941f4259b30SLisandro Dalcin NULL, 1942f4259b30SLisandro Dalcin NULL, 1943d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1944d70f29a3SPierre Jolivet NULL, 1945d70f29a3SPierre Jolivet NULL, 194699a7f59eSMark Adams NULL, 194799a7f59eSMark Adams NULL, 19487fb60732SBarry Smith NULL, 1949dec0b466SHong Zhang /*150*/ NULL, 1950eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ, 19514cc2b5b5SPierre Jolivet NULL, 195242ce410bSJunchao Zhang NULL, 195342ce410bSJunchao Zhang NULL, 1954eede4a3fSMark Adams NULL}; 1955a30f8f8cSSatish Balay 195666976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1957d71ae5a4SJacob Faibussowitsch { 1958476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1959535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19605d2a9ed1SStefano Zampini PetscMPIInt size; 1961a23d5eceSKris Buschelman 1962a23d5eceSKris Buschelman PetscFunctionBegin; 1963ad79cf63SBarry Smith if (B->hash_active) { 1964aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1965ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1966ad79cf63SBarry Smith } 1967ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19689566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19719566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19725f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19735f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1974899cda47SBarry Smith 1975d0f46423SBarry Smith mbs = B->rmap->n / bs; 1976d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19775f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1978a23d5eceSKris Buschelman 1979d0f46423SBarry Smith B->rmap->bs = bs; 1980a23d5eceSKris Buschelman b->bs2 = bs * bs; 1981a23d5eceSKris Buschelman b->mbs = mbs; 1982a23d5eceSKris Buschelman b->Mbs = Mbs; 1983de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1984de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1985a23d5eceSKris Buschelman 1986ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1987d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1988d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1989a23d5eceSKris Buschelman 1990d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1991d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1992a23d5eceSKris Buschelman 1993cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1994eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 1995cb7b82ddSBarry Smith #else 19969566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 1997cb7b82ddSBarry Smith #endif 19989566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 19999566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 20009566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 20019566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 20029566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 20039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 20049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 20059566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 20069566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 2007cb7b82ddSBarry Smith 20089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2009c508b908SBarry Smith 2010c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 20119566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 20129566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 20139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 20149566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2015c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2016cb7b82ddSBarry Smith 2017c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2018ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 20199566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 20209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 20219566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 2022c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2023a23d5eceSKris Buschelman 20249566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 20259566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 202626fbe8dcSKarl Rupp 2027526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2028cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2029cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2031a23d5eceSKris Buschelman } 2032a23d5eceSKris Buschelman 203366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2034d71ae5a4SJacob Faibussowitsch { 203502106b30SBarry Smith PetscInt m, rstart, cend; 2036f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2037f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2038f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2039bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20403bd0feecSPierre Jolivet PetscBool nooffprocentries; 2041dfb205c3SBarry Smith 2042dfb205c3SBarry Smith PetscFunctionBegin; 20435f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20489566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2049dfb205c3SBarry Smith m = B->rmap->n / bs; 2050dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2051dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2052dfb205c3SBarry Smith 20535f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20549566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2055dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2056dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20575f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20584cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */ 2059dfb205c3SBarry Smith JJ = jj + ii[i]; 20600cd7f59aSBarry Smith bd = 0; 2061dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20620cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2063dfb205c3SBarry Smith JJ++; 20640cd7f59aSBarry Smith bd++; 2065dfb205c3SBarry Smith } 2066dfb205c3SBarry Smith d = 0; 2067dfb205c3SBarry Smith for (; j < nz; j++) { 2068dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2069dfb205c3SBarry Smith d++; 2070dfb205c3SBarry Smith } 2071dfb205c3SBarry Smith d_nnz[i] = d; 20720cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20730cd7f59aSBarry Smith nz = nz - bd; 20740cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2075dfb205c3SBarry Smith } 20769566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20779566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20789566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2079dfb205c3SBarry Smith 2080dfb205c3SBarry Smith values = (PetscScalar *)V; 208148a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2082dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2083dfb205c3SBarry Smith PetscInt row = i + rstart; 2084dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2085dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2086bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2087dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20889566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2089bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2090bb80cfbbSStefano Zampini PetscInt j; 20910cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20920cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20939566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20940cd7f59aSBarry Smith } 20950cd7f59aSBarry Smith } 2096dfb205c3SBarry Smith } 2097dfb205c3SBarry Smith 20989566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 20993bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 21003bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 21019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21033bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21043bd0feecSPierre Jolivet 21059566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 21063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2107dfb205c3SBarry Smith } 2108dfb205c3SBarry Smith 21090bad9183SKris Buschelman /*MC 2110fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2111828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2112828413b8SBarry Smith the matrix is stored. 2113828413b8SBarry Smith 2114828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 211511a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 21160bad9183SKris Buschelman 21172ef1f0ffSBarry Smith Options Database Key: 211811a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 21190bad9183SKris Buschelman 21202ef1f0ffSBarry Smith Level: beginner 21212ef1f0ffSBarry Smith 212211a5261eSBarry Smith Note: 2123476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2124476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2125476417e5SBarry Smith 21261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 21270bad9183SKris Buschelman M*/ 21280bad9183SKris Buschelman 2129d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2130d71ae5a4SJacob Faibussowitsch { 2131b5df2d14SHong Zhang Mat_MPISBAIJ *b; 213294ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2133b5df2d14SHong Zhang 2134b5df2d14SHong Zhang PetscFunctionBegin; 21354dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2136b0a32e0cSBarry Smith B->data = (void *)b; 2137aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2138b5df2d14SHong Zhang 2139b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2140b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2141b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2142b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 214326fbe8dcSKarl Rupp 21449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2146b5df2d14SHong Zhang 2147b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2149b5df2d14SHong Zhang 2150b5df2d14SHong Zhang /* build cache for off array entries formed */ 21519566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 215226fbe8dcSKarl Rupp 2153b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21540298fd71SBarry Smith b->colmap = NULL; 21550298fd71SBarry Smith b->garray = NULL; 2156b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2157b5df2d14SHong Zhang 2158b5df2d14SHong Zhang /* stuff used in block assembly */ 2159f4259b30SLisandro Dalcin b->barray = NULL; 2160b5df2d14SHong Zhang 2161b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2162f4259b30SLisandro Dalcin b->lvec = NULL; 2163f4259b30SLisandro Dalcin b->Mvctx = NULL; 2164f4259b30SLisandro Dalcin b->slvec0 = NULL; 2165f4259b30SLisandro Dalcin b->slvec0b = NULL; 2166f4259b30SLisandro Dalcin b->slvec1 = NULL; 2167f4259b30SLisandro Dalcin b->slvec1a = NULL; 2168f4259b30SLisandro Dalcin b->slvec1b = NULL; 2169f4259b30SLisandro Dalcin b->sMvctx = NULL; 2170b5df2d14SHong Zhang 2171b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2172f4259b30SLisandro Dalcin b->rowindices = NULL; 2173f4259b30SLisandro Dalcin b->rowvalues = NULL; 2174b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2175b5df2d14SHong Zhang 2176b5df2d14SHong Zhang /* hash table stuff */ 2177f4259b30SLisandro Dalcin b->ht = NULL; 2178f4259b30SLisandro Dalcin b->hd = NULL; 2179b5df2d14SHong Zhang b->ht_size = 0; 2180b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2181b5df2d14SHong Zhang b->ht_fact = 0; 2182b5df2d14SHong Zhang b->ht_total_ct = 0; 2183b5df2d14SHong Zhang b->ht_insert_ct = 0; 2184b5df2d14SHong Zhang 21857dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21867a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21877a868f3eSHong Zhang 2188f4259b30SLisandro Dalcin b->in_loc = NULL; 2189f4259b30SLisandro Dalcin b->v_loc = NULL; 219059ffdab8SBarry Smith b->n_loc = 0; 219194ae4db5SBarry Smith 21929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21966214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 21986214f412SHong Zhang #endif 2199d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 22009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2201d24d4204SJose E. Roman #endif 22029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 22039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2204aa5a9175SDahai Guo 2205b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2206b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2207b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2208b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2209eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2210b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2211eb1ec7c1SStefano Zampini #else 2212b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2213eb1ec7c1SStefano Zampini #endif 221413647f61SHong Zhang 22159566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2216d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 22179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 221894ae4db5SBarry Smith if (flg) { 221994ae4db5SBarry Smith PetscReal fact = 1.39; 22209566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 22219566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 222294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 22239566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 22249566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 222594ae4db5SBarry Smith } 2226d0609cedSBarry Smith PetscOptionsEnd(); 22273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2228b5df2d14SHong Zhang } 2229b5df2d14SHong Zhang 22302920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2231209238afSKris Buschelman /*MC 2232002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2233209238afSKris Buschelman 223411a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 223511a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2236209238afSKris Buschelman 223711a5261eSBarry Smith Options Database Key: 2238c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2239209238afSKris Buschelman 2240209238afSKris Buschelman Level: beginner 2241209238afSKris Buschelman 22421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2243209238afSKris Buschelman M*/ 2244209238afSKris Buschelman 22455d83a8b1SBarry Smith /*@ 2246b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2247b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2248b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2249b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2250b5df2d14SHong Zhang 2251c3339decSBarry Smith Collective 2252b5df2d14SHong Zhang 2253b5df2d14SHong Zhang Input Parameters: 22541c4f3114SJed Brown + B - the matrix 2255bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2256bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2257b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2258b5df2d14SHong Zhang submatrix (same for all local rows) 2259b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22606d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22612ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 226295742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2263b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2264b5df2d14SHong Zhang submatrix (same for all local rows). 2265b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2266c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22672ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2268b5df2d14SHong Zhang 2269b5df2d14SHong Zhang Options Database Keys: 2270a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2271b5df2d14SHong Zhang block calculations (much slower) 2272a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2273b5df2d14SHong Zhang 22742ef1f0ffSBarry Smith Level: intermediate 22752ef1f0ffSBarry Smith 2276b5df2d14SHong Zhang Notes: 2277b5df2d14SHong Zhang 227811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2279b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2280b5df2d14SHong Zhang 228149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228249a6f317SBarry Smith 2283b5df2d14SHong Zhang Storage Information: 2284b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2285b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2286b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2287b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2288b5df2d14SHong Zhang 2289b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22902ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22912ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2292b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22932ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2294b5df2d14SHong Zhang 229511a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2296aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22972ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2298aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2299aa95bbe8SBarry Smith 2300b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2301b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2302b5df2d14SHong Zhang 2303b5df2d14SHong Zhang .vb 2304b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2305a4b1a0f6SJed Brown -------------------------- 2306c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2307c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2308c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2309a4b1a0f6SJed Brown -------------------------- 2310b5df2d14SHong Zhang .ve 2311b5df2d14SHong Zhang 2312b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2313b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23146d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 231511a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2316b5df2d14SHong Zhang 23172ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23186d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23192ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2320c2fc9fa9SBarry Smith 2321b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 23222ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2323b5df2d14SHong Zhang 23241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2325b5df2d14SHong Zhang @*/ 2326d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2327d71ae5a4SJacob Faibussowitsch { 2328b5df2d14SHong Zhang PetscFunctionBegin; 23296ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23306ba663aaSJed Brown PetscValidType(B, 1); 23316ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2332cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2334b5df2d14SHong Zhang } 2335b5df2d14SHong Zhang 23362920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 23375d83a8b1SBarry Smith /*@ 233811a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2339a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2340a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 234120f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2342a30f8f8cSSatish Balay 2343d083f849SBarry Smith Collective 2344a30f8f8cSSatish Balay 2345a30f8f8cSSatish Balay Input Parameters: 2346a30f8f8cSSatish Balay + comm - MPI communicator 234711a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 234820f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 234920f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2350a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2351a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 235220f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2353a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2354a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 235520f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 235620f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2357a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2358a30f8f8cSSatish Balay submatrix (same for all local rows) 2359a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23606d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23612ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 236295742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 236395742e49SBarry Smith set its value even if it is zero. 2364a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2365a30f8f8cSSatish Balay submatrix (same for all local rows). 2366a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2367a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23682ef1f0ffSBarry Smith each block row) or `NULL`. 2369a30f8f8cSSatish Balay 2370a30f8f8cSSatish Balay Output Parameter: 2371a30f8f8cSSatish Balay . A - the matrix 2372a30f8f8cSSatish Balay 2373a30f8f8cSSatish Balay Options Database Keys: 2374a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2375a30f8f8cSSatish Balay block calculations (much slower) 2376a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2377a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2378a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2379a30f8f8cSSatish Balay 23802ef1f0ffSBarry Smith Level: intermediate 23812ef1f0ffSBarry Smith 23822ef1f0ffSBarry Smith Notes: 238377433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2384f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 238511a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2386175b88e8SBarry Smith 2387d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23886d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2389d1be2dadSMatthew Knepley 2390a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2391a30f8f8cSSatish Balay (possibly both). 2392a30f8f8cSSatish Balay 239311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2394a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2395a30f8f8cSSatish Balay 2396727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by 2397727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 2398727bdf9bSBarry Smith 239949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 240049a6f317SBarry Smith 2401a30f8f8cSSatish Balay Storage Information: 2402a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2403a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2404a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2405a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 24082ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 24092ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2410a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 24112ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2412a30f8f8cSSatish Balay 2413a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2414a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2415a30f8f8cSSatish Balay 2416a30f8f8cSSatish Balay .vb 2417a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2418a4b1a0f6SJed Brown -------------------------- 2419c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2420c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2421c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2422a4b1a0f6SJed Brown -------------------------- 2423a30f8f8cSSatish Balay .ve 2424a30f8f8cSSatish Balay 2425a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2426a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24276d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24282ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2429a30f8f8cSSatish Balay 24302ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24316d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24322ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2433a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24342ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2435a30f8f8cSSatish Balay 2436727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, 2437727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 2438a30f8f8cSSatish Balay @*/ 2439d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2440d71ae5a4SJacob Faibussowitsch { 24411302d50aSBarry Smith PetscMPIInt size; 2442a30f8f8cSSatish Balay 2443a30f8f8cSSatish Balay PetscFunctionBegin; 24449566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2447273d9f13SBarry Smith if (size > 1) { 24489566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24499566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2450273d9f13SBarry Smith } else { 24519566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24529566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2453273d9f13SBarry Smith } 24543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2455a30f8f8cSSatish Balay } 2456a30f8f8cSSatish Balay 2457d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2458d71ae5a4SJacob Faibussowitsch { 2459a30f8f8cSSatish Balay Mat mat; 2460a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2461d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2462387bc808SHong Zhang PetscScalar *array; 2463a30f8f8cSSatish Balay 2464a30f8f8cSSatish Balay PetscFunctionBegin; 2465f4259b30SLisandro Dalcin *newmat = NULL; 246626fbe8dcSKarl Rupp 24679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24699566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24709566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24719566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2472e1b6402fSHong Zhang 2473420957c1SBarry Smith if (matin->hash_active) { 2474420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2475420957c1SBarry Smith } else { 2476d5f3da31SBarry Smith mat->factortype = matin->factortype; 2477273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 247882327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24797fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24807fff6886SHong Zhang 2481b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2482a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2483a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2484a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2485a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2486a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2487a30f8f8cSSatish Balay 2488a30f8f8cSSatish Balay a->size = oldmat->size; 2489a30f8f8cSSatish Balay a->rank = oldmat->rank; 2490a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2491a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2492f4259b30SLisandro Dalcin a->rowindices = NULL; 2493f4259b30SLisandro Dalcin a->rowvalues = NULL; 2494a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2495f4259b30SLisandro Dalcin a->barray = NULL; 2496899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2497899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2498899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2499899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2500a30f8f8cSSatish Balay 2501a30f8f8cSSatish Balay /* hash table stuff */ 2502f4259b30SLisandro Dalcin a->ht = NULL; 2503f4259b30SLisandro Dalcin a->hd = NULL; 2504a30f8f8cSSatish Balay a->ht_size = 0; 2505a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2506a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2507a30f8f8cSSatish Balay a->ht_total_ct = 0; 2508a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2509a30f8f8cSSatish Balay 25109566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2511a30f8f8cSSatish Balay if (oldmat->colmap) { 2512a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2513eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2514a30f8f8cSSatish Balay #else 25159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 25169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2517a30f8f8cSSatish Balay #endif 2518f4259b30SLisandro Dalcin } else a->colmap = NULL; 2519387bc808SHong Zhang 2520f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 25219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 25229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2523f4259b30SLisandro Dalcin } else a->garray = NULL; 2524a30f8f8cSSatish Balay 25259566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 25269566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 25279566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 252882327fa8SHong Zhang 25299566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25309566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2531387bc808SHong Zhang 25329566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25339566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25349566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25359566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25379566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25389566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2540387bc808SHong Zhang 2541387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25429566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2543387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 254482327fa8SHong Zhang 25459566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25469566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 2547420957c1SBarry Smith } 25489566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2549a30f8f8cSSatish Balay *newmat = mat; 25503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2551a30f8f8cSSatish Balay } 2552a30f8f8cSSatish Balay 2553618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2554618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2555618cc2edSLisandro Dalcin 25566cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2557d71ae5a4SJacob Faibussowitsch { 25587f489da9SVaclav Hapla PetscBool isbinary; 255995936485SShri Abhyankar 256095936485SShri Abhyankar PetscFunctionBegin; 25619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25625f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25639566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 256595936485SShri Abhyankar } 256695936485SShri Abhyankar 2567789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2568d71ae5a4SJacob Faibussowitsch { 256924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2570f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data; 2571ca54ac64SHong Zhang PetscReal atmp; 257287828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25731302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25741302d50aSBarry Smith PetscMPIInt rank, size; 25756497c311SBarry Smith PetscInt *rowners_bs, count, source; 257687828ca2SBarry Smith PetscScalar *va; 25778a1c53f2SBarry Smith MatScalar *ba; 2578f4c0e9e4SHong Zhang MPI_Status stat; 257924d5174aSHong Zhang 258024d5174aSHong Zhang PetscFunctionBegin; 25815f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25829566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25839566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2584f4c0e9e4SHong Zhang 25859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2587f4c0e9e4SHong Zhang 2588d0f46423SBarry Smith bs = A->rmap->bs; 2589f4c0e9e4SHong Zhang mbs = a->mbs; 2590f4c0e9e4SHong Zhang Mbs = a->Mbs; 2591f4c0e9e4SHong Zhang ba = b->a; 2592f4c0e9e4SHong Zhang bi = b->i; 2593f4c0e9e4SHong Zhang bj = b->j; 2594f4c0e9e4SHong Zhang 2595f4c0e9e4SHong Zhang /* find ownerships */ 2596d0f46423SBarry Smith rowners_bs = A->rmap->range; 2597f4c0e9e4SHong Zhang 2598f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2600f4c0e9e4SHong Zhang 2601f4c0e9e4SHong Zhang /* row_max for B */ 2602b8475685SHong Zhang if (rank != size - 1) { 2603f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 26049371c9d4SSatish Balay ncols = bi[1] - bi[0]; 26059371c9d4SSatish Balay bi++; 2606f4c0e9e4SHong Zhang brow = bs * i; 2607f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2608f4c0e9e4SHong Zhang bcol = bs * (*bj); 2609f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2610ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 261104d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2612f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 26139371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 26149371c9d4SSatish Balay ba++; 2615ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2616ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2617f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2618f4c0e9e4SHong Zhang } 2619f4c0e9e4SHong Zhang } 2620f4c0e9e4SHong Zhang bj++; 2621f4c0e9e4SHong Zhang } 2622f4c0e9e4SHong Zhang } 2623f4c0e9e4SHong Zhang 2624f4c0e9e4SHong Zhang /* send values to its owners */ 26256497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) { 2626f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2627ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26286497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2629ca54ac64SHong Zhang } 2630f4c0e9e4SHong Zhang } 2631f4c0e9e4SHong Zhang 2632f4c0e9e4SHong Zhang /* receive values */ 2633ca54ac64SHong Zhang if (rank) { 2634f4c0e9e4SHong Zhang rvalues = work; 2635ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2636f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26376497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2638f4c0e9e4SHong Zhang /* process values */ 2639f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2640ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2641f4c0e9e4SHong Zhang } 2642f4c0e9e4SHong Zhang } 2643ca54ac64SHong Zhang } 2644f4c0e9e4SHong Zhang 26459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26469566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 264824d5174aSHong Zhang } 26492798e883SHong Zhang 2650789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2651d71ae5a4SJacob Faibussowitsch { 26522798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2653d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26543649974fSBarry Smith PetscScalar *x, *ptr, *from; 2655ffe4fb16SHong Zhang Vec bb1; 26563649974fSBarry Smith const PetscScalar *b; 2657ffe4fb16SHong Zhang 2658ffe4fb16SHong Zhang PetscFunctionBegin; 26595f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26605f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2661ffe4fb16SHong Zhang 2662a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26639566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2665a2b30743SBarry Smith } 2666a2b30743SBarry Smith 2667ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2668ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26699566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2670ffe4fb16SHong Zhang its--; 2671ffe4fb16SHong Zhang } 2672ffe4fb16SHong Zhang 26739566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2674ffe4fb16SHong Zhang while (its--) { 2675ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26769566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2677ffe4fb16SHong Zhang 2678ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26799566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26809566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2683ffe4fb16SHong Zhang 26849566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2685ffe4fb16SHong Zhang 2686ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26879566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26909566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2691ffe4fb16SHong Zhang 2692ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2693629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2694629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2695ffe4fb16SHong Zhang 26969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26999566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2700ffe4fb16SHong Zhang 2701ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 27029566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2703ffe4fb16SHong Zhang 2704ffe4fb16SHong Zhang /* local diagonal sweep */ 27059566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2706ffe4fb16SHong Zhang } 27079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2708fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27099566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2710fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27119566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2712fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2713fa22f6d0SBarry Smith Vec xx1; 2714ace3abfcSBarry Smith PetscBool hasop; 271520f1ed55SBarry Smith const PetscScalar *diag; 2716887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 271720f1ed55SBarry Smith PetscInt i, n; 2718fa22f6d0SBarry Smith 2719fa22f6d0SBarry Smith if (!mat->xx1) { 27209566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 27219566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2722fa22f6d0SBarry Smith } 2723fa22f6d0SBarry Smith xx1 = mat->xx1; 2724fa22f6d0SBarry Smith bb1 = mat->bb1; 2725fa22f6d0SBarry Smith 27269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2727fa22f6d0SBarry Smith 2728fa22f6d0SBarry Smith if (!mat->diag) { 2729effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27309566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27319566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2732fa22f6d0SBarry Smith } 27339566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2734fa22f6d0SBarry Smith 2735fa22f6d0SBarry Smith if (hasop) { 27369566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27379566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 273820f1ed55SBarry Smith } else { 273920f1ed55SBarry Smith /* 274020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27419566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27429566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 274320f1ed55SBarry Smith */ 27449566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27469566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27479566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27489566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2749887ee2caSBarry Smith if (omega == 1.0) { 275026fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2752887ee2caSBarry Smith } else { 275326fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27549566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2755887ee2caSBarry Smith } 27569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 276020f1ed55SBarry Smith } 2761fa22f6d0SBarry Smith 2762fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2763629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2764629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27659566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27669566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27679566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27709566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27719566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27729566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27739566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2774fa22f6d0SBarry Smith 2775fa22f6d0SBarry Smith /* local sweep */ 27769566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27779566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2778f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2780ffe4fb16SHong Zhang } 2781ffe4fb16SHong Zhang 2782dfb205c3SBarry Smith /*@ 2783d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows. 2784dfb205c3SBarry Smith 2785d083f849SBarry Smith Collective 2786dfb205c3SBarry Smith 2787dfb205c3SBarry Smith Input Parameters: 2788dfb205c3SBarry Smith + comm - MPI communicator 2789dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 279011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2791dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2792d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 27932ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27942ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27952ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2796483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2797dfb205c3SBarry Smith . j - column indices 2798dfb205c3SBarry Smith - a - matrix values 2799dfb205c3SBarry Smith 2800dfb205c3SBarry Smith Output Parameter: 2801dfb205c3SBarry Smith . mat - the matrix 2802dfb205c3SBarry Smith 2803dfb205c3SBarry Smith Level: intermediate 2804dfb205c3SBarry Smith 2805dfb205c3SBarry Smith Notes: 28062ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 28072ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 28082ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2809dfb205c3SBarry Smith 28102ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2811dfb205c3SBarry Smith 28121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 2813d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()` 2814dfb205c3SBarry Smith @*/ 2815d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2816d71ae5a4SJacob Faibussowitsch { 2817dfb205c3SBarry Smith PetscFunctionBegin; 28185f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 28195f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 28209566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 28219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 28229566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 28239566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 28243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2825dfb205c3SBarry Smith } 2826dfb205c3SBarry Smith 28275d83a8b1SBarry Smith /*@ 282811a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2829dfb205c3SBarry Smith 2830d083f849SBarry Smith Collective 2831dfb205c3SBarry Smith 2832dfb205c3SBarry Smith Input Parameters: 28331c4f3114SJed Brown + B - the matrix 2834dfb205c3SBarry Smith . bs - the block size 2835d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 2836d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row 2837d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided 2838dfb205c3SBarry Smith 2839664954b6SBarry Smith Level: advanced 2840664954b6SBarry Smith 2841664954b6SBarry Smith Notes: 2842d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2843d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2844d8a51d2aSBarry Smith called this routine. 2845d8a51d2aSBarry Smith 28460cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28470cd7f59aSBarry Smith and usually the numerical values as well 28480cd7f59aSBarry Smith 2849d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored 2850dfb205c3SBarry Smith 2851d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, 2852d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()` 2853dfb205c3SBarry Smith @*/ 2854d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2855d71ae5a4SJacob Faibussowitsch { 2856dfb205c3SBarry Smith PetscFunctionBegin; 2857cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2859dfb205c3SBarry Smith } 2860dfb205c3SBarry Smith 2861d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2862d71ae5a4SJacob Faibussowitsch { 286310c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 286410c56fdeSHong Zhang PetscInt *indx; 286510c56fdeSHong Zhang PetscScalar *values; 2866dfb205c3SBarry Smith 28674dcd73b1SHong Zhang PetscFunctionBegin; 28689566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 286910c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 287010c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2871de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 287210c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2873de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28744dcd73b1SHong Zhang 28759566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28769371c9d4SSatish Balay mbs = m / bs; 28779371c9d4SSatish Balay Nbs = N / cbs; 287848a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2879da91a574SPierre Jolivet nbs = n / cbs; 28804dcd73b1SHong Zhang 28819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2882d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2883de25e9cbSPierre Jolivet 28849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2886de25e9cbSPierre Jolivet if (rank == size - 1) { 2887de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28885f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2889de25e9cbSPierre Jolivet } 2890de25e9cbSPierre Jolivet 2891d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28929566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 289310c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28949566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28954dcd73b1SHong Zhang nnz = nnz / bs; 28964dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28979566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28989566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28994dcd73b1SHong Zhang } 29009566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29019566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 29024dcd73b1SHong Zhang 29039566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 29049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 29059566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 29069566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 29079566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 29089566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2909d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 29104dcd73b1SHong Zhang } 29114dcd73b1SHong Zhang 291210c56fdeSHong Zhang /* numeric phase */ 29139566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 29149566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 29154dcd73b1SHong Zhang 29169566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 29174dcd73b1SHong Zhang for (i = 0; i < m; i++) { 29189566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29194dcd73b1SHong Zhang Ii = i + rstart; 29209566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 29219566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29224dcd73b1SHong Zhang } 29239566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 29259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 29263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29274dcd73b1SHong Zhang } 2928