1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec); 221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51dfbe8321SBarry Smith PetscErrorCode ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 103ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \ 104a30f8f8cSSatish Balay N = nrow++ - 1; \ 105a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 106a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 107a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 108a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 111a30f8f8cSSatish Balay rp[_i] = bcol; \ 112a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 113a30f8f8cSSatish Balay a_noinsert:; \ 114a30f8f8cSSatish Balay ailen[brow] = nrow; \ 115a30f8f8cSSatish Balay } 116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 117a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 118a30f8f8cSSatish Balay { \ 119a30f8f8cSSatish Balay brow = row/bs; \ 120a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 121a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 122a30f8f8cSSatish Balay bcol = col/bs; \ 123a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 124a30f8f8cSSatish Balay low = 0; high = nrow; \ 125a30f8f8cSSatish Balay while (high-low > 3) { \ 126a30f8f8cSSatish Balay t = (low+high)/2; \ 127a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 128a30f8f8cSSatish Balay else low = t; \ 129a30f8f8cSSatish Balay } \ 130a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 131a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 132a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 133a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 134a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 135a30f8f8cSSatish Balay else *bap = value; \ 136a30f8f8cSSatish Balay goto b_noinsert; \ 137a30f8f8cSSatish Balay } \ 138a30f8f8cSSatish Balay } \ 139a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 140085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 141ed1caa07SMatthew Knepley MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay b_noinsert:; \ 152a30f8f8cSSatish Balay bilen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #endif 155a30f8f8cSSatish Balay 156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1574a2ae208SSatish Balay #undef __FUNCT__ 1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 160a30f8f8cSSatish Balay { 161a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 162dfbe8321SBarry Smith PetscErrorCode ierr; 1631302d50aSBarry Smith PetscInt i,N = m*n; 164a30f8f8cSSatish Balay MatScalar *vsingle; 165a30f8f8cSSatish Balay 166a30f8f8cSSatish Balay PetscFunctionBegin; 167a30f8f8cSSatish Balay if (N > b->setvalueslen) { 168a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 16982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 170a30f8f8cSSatish Balay b->setvalueslen = N; 171a30f8f8cSSatish Balay } 172a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 173a30f8f8cSSatish Balay 174a30f8f8cSSatish Balay for (i=0; i<N; i++) { 175a30f8f8cSSatish Balay vsingle[i] = v[i]; 176a30f8f8cSSatish Balay } 177a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 178a30f8f8cSSatish Balay PetscFunctionReturn(0); 179a30f8f8cSSatish Balay } 180a30f8f8cSSatish Balay 1814a2ae208SSatish Balay #undef __FUNCT__ 1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 184a30f8f8cSSatish Balay { 185a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 186dfbe8321SBarry Smith PetscErrorCode ierr; 1871302d50aSBarry Smith PetscInt i,N = m*n*b->bs2; 188a30f8f8cSSatish Balay MatScalar *vsingle; 189a30f8f8cSSatish Balay 190a30f8f8cSSatish Balay PetscFunctionBegin; 191a30f8f8cSSatish Balay if (N > b->setvalueslen) { 192a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 19382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 194a30f8f8cSSatish Balay b->setvalueslen = N; 195a30f8f8cSSatish Balay } 196a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 197a30f8f8cSSatish Balay for (i=0; i<N; i++) { 198a30f8f8cSSatish Balay vsingle[i] = v[i]; 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 201a30f8f8cSSatish Balay PetscFunctionReturn(0); 202a30f8f8cSSatish Balay } 203a30f8f8cSSatish Balay #endif 204a30f8f8cSSatish Balay 205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 206a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 207a30f8f8cSSatish Balay */ 2084a2ae208SSatish Balay #undef __FUNCT__ 209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 211a30f8f8cSSatish Balay { 212a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 213a30f8f8cSSatish Balay MatScalar value; 214b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 215dfbe8321SBarry Smith PetscErrorCode ierr; 2161302d50aSBarry Smith PetscInt i,j,row,col; 2171302d50aSBarry Smith PetscInt rstart_orig=baij->rstart_bs; 2181302d50aSBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 219521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 220a30f8f8cSSatish Balay 221a30f8f8cSSatish Balay /* Some Variables required in the macro */ 222a30f8f8cSSatish Balay Mat A = baij->A; 223a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2241302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 225a30f8f8cSSatish Balay MatScalar *aa=a->a; 226a30f8f8cSSatish Balay 227a30f8f8cSSatish Balay Mat B = baij->B; 228a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2291302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 230a30f8f8cSSatish Balay MatScalar *ba=b->a; 231a30f8f8cSSatish Balay 2321302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2331302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 234a30f8f8cSSatish Balay MatScalar *ap,*bap; 235a30f8f8cSSatish Balay 236a30f8f8cSSatish Balay /* for stash */ 2371302d50aSBarry Smith PetscInt n_loc, *in_loc=0; 238f65c83cfSHong Zhang MatScalar *v_loc=0; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay PetscFunctionBegin; 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay if(!baij->donotstash){ 2431302d50aSBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr); 24482502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay 247a30f8f8cSSatish Balay for (i=0; i<m; i++) { 248a30f8f8cSSatish Balay if (im[i] < 0) continue; 2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 25077431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 251a30f8f8cSSatish Balay #endif 252a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 253a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 254a30f8f8cSSatish Balay for (j=0; j<n; j++) { 255f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 256a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 257a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 258a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 259a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 260a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 261a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 262a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 263a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 26577431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);} 266a30f8f8cSSatish Balay #endif 267a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 268a30f8f8cSSatish Balay if (mat->was_assembled) { 269a30f8f8cSSatish Balay if (!baij->colmap) { 270653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 271a30f8f8cSSatish Balay } 272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 273a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 27471730473SSatish Balay col = col - 1; 275a30f8f8cSSatish Balay #else 27671730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 277a30f8f8cSSatish Balay #endif 278a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 279a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 280a30f8f8cSSatish Balay col = in[j]; 281a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 282a30f8f8cSSatish Balay B = baij->B; 283a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 284a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 285a30f8f8cSSatish Balay ba=b->a; 28671730473SSatish Balay } else col += in[j]%bs; 287a30f8f8cSSatish Balay } else col = in[j]; 288a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 289a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 290a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 291a30f8f8cSSatish Balay } 292a30f8f8cSSatish Balay } 293a30f8f8cSSatish Balay } else { /* off processor entry */ 294a30f8f8cSSatish Balay if (!baij->donotstash) { 295a30f8f8cSSatish Balay n_loc = 0; 296a30f8f8cSSatish Balay for (j=0; j<n; j++){ 297f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 298a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 299a30f8f8cSSatish Balay if (roworiented) { 300a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 301a30f8f8cSSatish Balay } else { 302a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay n_loc++; 305a30f8f8cSSatish Balay } 306a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 307a30f8f8cSSatish Balay } 308a30f8f8cSSatish Balay } 309a30f8f8cSSatish Balay } 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay if(!baij->donotstash){ 312a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 313a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay PetscFunctionReturn(0); 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay 3184a2ae208SSatish Balay #undef __FUNCT__ 319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 321a30f8f8cSSatish Balay { 3220880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 323f15d580aSBarry Smith const MatScalar *value; 324f15d580aSBarry Smith MatScalar *barray=baij->barray; 3250880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 326dfbe8321SBarry Smith PetscErrorCode ierr; 3271302d50aSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 3281302d50aSBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 329521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 3300880e062SHong Zhang 331a30f8f8cSSatish Balay PetscFunctionBegin; 3320880e062SHong Zhang if(!barray) { 3330880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 3340880e062SHong Zhang baij->barray = barray; 3350880e062SHong Zhang } 3360880e062SHong Zhang 3370880e062SHong Zhang if (roworiented) { 3380880e062SHong Zhang stepval = (n-1)*bs; 3390880e062SHong Zhang } else { 3400880e062SHong Zhang stepval = (m-1)*bs; 3410880e062SHong Zhang } 3420880e062SHong Zhang for (i=0; i<m; i++) { 3430880e062SHong Zhang if (im[i] < 0) continue; 3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 34577431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 3460880e062SHong Zhang #endif 3470880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 3480880e062SHong Zhang row = im[i] - rstart; 3490880e062SHong Zhang for (j=0; j<n; j++) { 3500880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 3510880e062SHong Zhang if ((roworiented) && (n == 1)) { 352f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 3530880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 354f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 3550880e062SHong Zhang } else { /* Here a copy is required */ 3560880e062SHong Zhang if (roworiented) { 3570880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 3580880e062SHong Zhang } else { 3590880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3600880e062SHong Zhang } 3610880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3620880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3630880e062SHong Zhang *barray++ = *value++; 3640880e062SHong Zhang } 3650880e062SHong Zhang } 3660880e062SHong Zhang barray -=bs2; 3670880e062SHong Zhang } 3680880e062SHong Zhang 3690880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3700880e062SHong Zhang col = in[j] - cstart; 3710880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3720880e062SHong Zhang } 3730880e062SHong Zhang else if (in[j] < 0) continue; 3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 37577431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3760880e062SHong Zhang #endif 3770880e062SHong Zhang else { 3780880e062SHong Zhang if (mat->was_assembled) { 3790880e062SHong Zhang if (!baij->colmap) { 380653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3810880e062SHong Zhang } 3820880e062SHong Zhang 3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3851302d50aSBarry Smith { PetscInt data; 3860880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3870880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3880880e062SHong Zhang } 3890880e062SHong Zhang #else 3900880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3910880e062SHong Zhang #endif 3920880e062SHong Zhang #endif 3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3940880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3950880e062SHong Zhang col = (col - 1)/bs; 3960880e062SHong Zhang #else 3970880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3980880e062SHong Zhang #endif 3990880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4000880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4010880e062SHong Zhang col = in[j]; 4020880e062SHong Zhang } 4030880e062SHong Zhang } 4040880e062SHong Zhang else col = in[j]; 405e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4060880e062SHong Zhang } 4070880e062SHong Zhang } 4080880e062SHong Zhang } else { 4090880e062SHong Zhang if (!baij->donotstash) { 4100880e062SHong Zhang if (roworiented) { 4110880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4120880e062SHong Zhang } else { 4130880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 4140880e062SHong Zhang } 4150880e062SHong Zhang } 4160880e062SHong Zhang } 4170880e062SHong Zhang } 4180880e062SHong Zhang PetscFunctionReturn(0); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay 4214a2ae208SSatish Balay #undef __FUNCT__ 4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 424a30f8f8cSSatish Balay { 425f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4266849ba73SBarry Smith PetscErrorCode ierr; 427521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 4281302d50aSBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 429a30f8f8cSSatish Balay 430a30f8f8cSSatish Balay PetscFunctionBegin; 431a30f8f8cSSatish Balay for (i=0; i<m; i++) { 43277431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 43377431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 434a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 435a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 436a30f8f8cSSatish Balay for (j=0; j<n; j++) { 43777431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); 43877431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 439a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 440a30f8f8cSSatish Balay col = idxn[j] - bscstart; 441c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 442a30f8f8cSSatish Balay } else { 443a30f8f8cSSatish Balay if (!baij->colmap) { 444653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 445a30f8f8cSSatish Balay } 446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 447a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 448a30f8f8cSSatish Balay data --; 449a30f8f8cSSatish Balay #else 450a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 451a30f8f8cSSatish Balay #endif 452a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 453a30f8f8cSSatish Balay else { 454a30f8f8cSSatish Balay col = data + idxn[j]%bs; 455e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 456a30f8f8cSSatish Balay } 457a30f8f8cSSatish Balay } 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay } else { 46029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 461a30f8f8cSSatish Balay } 462a30f8f8cSSatish Balay } 463a30f8f8cSSatish Balay PetscFunctionReturn(0); 464a30f8f8cSSatish Balay } 465a30f8f8cSSatish Balay 4664a2ae208SSatish Balay #undef __FUNCT__ 4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 469a30f8f8cSSatish Balay { 470a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 471dfbe8321SBarry Smith PetscErrorCode ierr; 472a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 473a30f8f8cSSatish Balay 474a30f8f8cSSatish Balay PetscFunctionBegin; 475a30f8f8cSSatish Balay if (baij->size == 1) { 476a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 479f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 480a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 481a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 482a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 483a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 484d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 485a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 486a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4870b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4880b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4890b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4900b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 4910b8dc8d2SHong Zhang PetscInt *jj,*garray=baij->garray,rstart=baij->rstart,nz; 4920b8dc8d2SHong Zhang PetscInt brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs; 4930b8dc8d2SHong Zhang MatScalar *v; 4940b8dc8d2SHong Zhang 4950b8dc8d2SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr); 4960b8dc8d2SHong Zhang rsum2 = rsum + mat->N; 4970b8dc8d2SHong Zhang ierr = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 4980b8dc8d2SHong Zhang /* Amat */ 4990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 5000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 5030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 5050b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5060b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5090b8dc8d2SHong Zhang /* non-diagonal block */ 5100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 5110b8dc8d2SHong Zhang } 5120b8dc8d2SHong Zhang } 5130b8dc8d2SHong Zhang } 5140b8dc8d2SHong Zhang } 5150b8dc8d2SHong Zhang /* Bmat */ 5160b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 5170b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 5180b8dc8d2SHong Zhang grow = bs*(rstart + brow); 5190b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 5200b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 5210b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 5220b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 5230b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 5240b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 5250b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 5260b8dc8d2SHong Zhang rsum[grow+row] += vabs; 5270b8dc8d2SHong Zhang } 5280b8dc8d2SHong Zhang } 5290b8dc8d2SHong Zhang } 5300b8dc8d2SHong Zhang } 5310b8dc8d2SHong Zhang ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 5320b8dc8d2SHong Zhang *norm = 0.0; 5330b8dc8d2SHong Zhang for (col=0; col<mat->N; col++) { 5340b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 5350b8dc8d2SHong Zhang } 5360b8dc8d2SHong Zhang ierr = PetscFree(rsum);CHKERRQ(ierr); 537a30f8f8cSSatish Balay } else { 53829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay PetscFunctionReturn(0); 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 5444a2ae208SSatish Balay #undef __FUNCT__ 5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 547a30f8f8cSSatish Balay { 548a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 549dfbe8321SBarry Smith PetscErrorCode ierr; 5501302d50aSBarry Smith PetscInt nstash,reallocs; 551a30f8f8cSSatish Balay InsertMode addv; 552a30f8f8cSSatish Balay 553a30f8f8cSSatish Balay PetscFunctionBegin; 554a30f8f8cSSatish Balay if (baij->donotstash) { 555a30f8f8cSSatish Balay PetscFunctionReturn(0); 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 559a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 56129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 562a30f8f8cSSatish Balay } 563a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 564a30f8f8cSSatish Balay 565a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 566a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 567a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 56863ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 569a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 57063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 571a30f8f8cSSatish Balay PetscFunctionReturn(0); 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay 5744a2ae208SSatish Balay #undef __FUNCT__ 5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 577a30f8f8cSSatish Balay { 578a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 579a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 580a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 5816849ba73SBarry Smith PetscErrorCode ierr; 58213f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 5831302d50aSBarry Smith PetscInt *row,*col,other_disassembled; 58413f74950SBarry Smith PetscMPIInt n; 585a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 586a30f8f8cSSatish Balay MatScalar *val; 587a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 588a30f8f8cSSatish Balay 589a30f8f8cSSatish Balay PetscFunctionBegin; 590a30f8f8cSSatish Balay 591a30f8f8cSSatish Balay if (!baij->donotstash) { 592a30f8f8cSSatish Balay while (1) { 593a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 594a30f8f8cSSatish Balay if (!flg) break; 595a30f8f8cSSatish Balay 596a30f8f8cSSatish Balay for (i=0; i<n;) { 597a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 598a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 599a30f8f8cSSatish Balay if (j < n) ncols = j-i; 600a30f8f8cSSatish Balay else ncols = n-i; 601a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 602a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 603a30f8f8cSSatish Balay i = j; 604a30f8f8cSSatish Balay } 605a30f8f8cSSatish Balay } 606a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 607a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 608a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 609a30f8f8cSSatish Balay restore the original flags */ 610a30f8f8cSSatish Balay r1 = baij->roworiented; 611a30f8f8cSSatish Balay r2 = a->roworiented; 612a30f8f8cSSatish Balay r3 = b->roworiented; 613a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 614a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 615a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 616a30f8f8cSSatish Balay while (1) { 617a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 618a30f8f8cSSatish Balay if (!flg) break; 619a30f8f8cSSatish Balay 620a30f8f8cSSatish Balay for (i=0; i<n;) { 621a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 622a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 623a30f8f8cSSatish Balay if (j < n) ncols = j-i; 624a30f8f8cSSatish Balay else ncols = n-i; 625a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 626a30f8f8cSSatish Balay i = j; 627a30f8f8cSSatish Balay } 628a30f8f8cSSatish Balay } 629a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 630a30f8f8cSSatish Balay baij->roworiented = r1; 631a30f8f8cSSatish Balay a->roworiented = r2; 632a30f8f8cSSatish Balay b->roworiented = r3; 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 636a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 637a30f8f8cSSatish Balay 638a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 639a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 640a30f8f8cSSatish Balay /* 641a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 642a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 643a30f8f8cSSatish Balay */ 644a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 645a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 646a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 647c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 651a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 65240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 653a30f8f8cSSatish Balay } 6544eb6d288SHong Zhang b->compressedrow.use = PETSC_TRUE; 655a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 656a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay if (baij->rowvalues) { 659a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 660a30f8f8cSSatish Balay baij->rowvalues = 0; 661a30f8f8cSSatish Balay } 6625222a1afSHong Zhang 663a30f8f8cSSatish Balay PetscFunctionReturn(0); 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 6664a2ae208SSatish Balay #undef __FUNCT__ 6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 669a30f8f8cSSatish Balay { 670a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 672521d7252SBarry Smith PetscInt bs = mat->bs; 6731302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 67432077d6dSBarry Smith PetscTruth iascii,isdraw; 675b0a32e0cSBarry Smith PetscViewer sviewer; 676f3ef73ceSBarry Smith PetscViewerFormat format; 677a30f8f8cSSatish Balay 678a30f8f8cSSatish Balay PetscFunctionBegin; 67932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 680fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 68132077d6dSBarry Smith if (iascii) { 682b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 683456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 684a30f8f8cSSatish Balay MatInfo info; 685a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 686a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 68777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 68877431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 689521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 690a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 69177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 692a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 69377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 694b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 695a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 696a30f8f8cSSatish Balay PetscFunctionReturn(0); 697fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 69877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 699a30f8f8cSSatish Balay PetscFunctionReturn(0); 700c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 701c1490034SHong Zhang PetscFunctionReturn(0); 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay 705a30f8f8cSSatish Balay if (isdraw) { 706b0a32e0cSBarry Smith PetscDraw draw; 707a30f8f8cSSatish Balay PetscTruth isnull; 708b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 709b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay 712a30f8f8cSSatish Balay if (size == 1) { 713e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 715a30f8f8cSSatish Balay } else { 716a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 717a30f8f8cSSatish Balay Mat A; 71865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 71965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 7201302d50aSBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 721a30f8f8cSSatish Balay MatScalar *a; 722a30f8f8cSSatish Balay 723f204ca49SKris Buschelman /* Should this be the same type as mat? */ 724f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 725a30f8f8cSSatish Balay if (!rank) { 726f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 727a30f8f8cSSatish Balay } else { 728f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 729a30f8f8cSSatish Balay } 730f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 731521d7252SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 73252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay /* copy over the A part */ 73565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 736a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 7371302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 738a30f8f8cSSatish Balay 739a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 740a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 741a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 742a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 743a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 744a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 745a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 746a30f8f8cSSatish Balay col++; a += bs; 747a30f8f8cSSatish Balay } 748a30f8f8cSSatish Balay } 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay /* copy over the B part */ 75165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 75265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 753a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 754a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 755a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 756a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 757a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 758a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 759a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 760a30f8f8cSSatish Balay col++; a += bs; 761a30f8f8cSSatish Balay } 762a30f8f8cSSatish Balay } 763a30f8f8cSSatish Balay } 764a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 765a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 766a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 767a30f8f8cSSatish Balay /* 768a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 769b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 770a30f8f8cSSatish Balay */ 771b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 77265d70643SHong Zhang if (!rank) { 773e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 774a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 775a30f8f8cSSatish Balay } 776b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 777a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay PetscFunctionReturn(0); 780a30f8f8cSSatish Balay } 781a30f8f8cSSatish Balay 7824a2ae208SSatish Balay #undef __FUNCT__ 7834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 784dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 785a30f8f8cSSatish Balay { 786dfbe8321SBarry Smith PetscErrorCode ierr; 78732077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 788a30f8f8cSSatish Balay 789a30f8f8cSSatish Balay PetscFunctionBegin; 79032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 791fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 792b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 793fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 79432077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 795a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 796a30f8f8cSSatish Balay } else { 7971302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 798a30f8f8cSSatish Balay } 799a30f8f8cSSatish Balay PetscFunctionReturn(0); 800a30f8f8cSSatish Balay } 801a30f8f8cSSatish Balay 8024a2ae208SSatish Balay #undef __FUNCT__ 8034a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 804dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 805a30f8f8cSSatish Balay { 806a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 807dfbe8321SBarry Smith PetscErrorCode ierr; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay PetscFunctionBegin; 810a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 81177431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 812a30f8f8cSSatish Balay #endif 813a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 815a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 816a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 817a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 818a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 819a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 820a30f8f8cSSatish Balay #else 821a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 822a30f8f8cSSatish Balay #endif 823a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 824a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 825a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 82640781036SHong Zhang if (baij->slvec0) { 82740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 82840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 82940781036SHong Zhang } 83040781036SHong Zhang if (baij->slvec1) { 83140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 83240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 83340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 83440781036SHong Zhang } 83540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 836a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 837a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 838a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 839a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 840a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 841a30f8f8cSSatish Balay #endif 842a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 843901853e0SKris Buschelman 844901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 845901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 846901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 847901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 848a30f8f8cSSatish Balay PetscFunctionReturn(0); 849a30f8f8cSSatish Balay } 850a30f8f8cSSatish Balay 8514a2ae208SSatish Balay #undef __FUNCT__ 852a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 853dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 854a9d4b620SHong Zhang { 855a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 856dfbe8321SBarry Smith PetscErrorCode ierr; 857521d7252SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->bs; 858a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 859a9d4b620SHong Zhang 860a9d4b620SHong Zhang PetscFunctionBegin; 861a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 862a9d4b620SHong Zhang if (nt != A->n) { 863a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 864a9d4b620SHong Zhang } 865a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 866a9d4b620SHong Zhang if (nt != A->m) { 867a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 868a9d4b620SHong Zhang } 869a9d4b620SHong Zhang 870a9d4b620SHong Zhang /* diagonal part */ 871a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 8722dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 873a9d4b620SHong Zhang 874a9d4b620SHong Zhang /* subdiagonal part */ 875a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 876a9d4b620SHong Zhang 877a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8781ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8791ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 880a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 8811ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 882a9d4b620SHong Zhang 883a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 8841ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 885a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 886a9d4b620SHong Zhang 887a9d4b620SHong Zhang /* supperdiagonal part */ 888a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 889a9d4b620SHong Zhang 890a9d4b620SHong Zhang PetscFunctionReturn(0); 891a9d4b620SHong Zhang } 892a9d4b620SHong Zhang 893a9d4b620SHong Zhang #undef __FUNCT__ 89440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 895dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 896a30f8f8cSSatish Balay { 897a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 898dfbe8321SBarry Smith PetscErrorCode ierr; 8991302d50aSBarry Smith PetscInt nt; 900a30f8f8cSSatish Balay 901a30f8f8cSSatish Balay PetscFunctionBegin; 902a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 903b5df2d14SHong Zhang if (nt != A->n) { 90429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 905a30f8f8cSSatish Balay } 906a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 907b5df2d14SHong Zhang if (nt != A->m) { 90829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 909a30f8f8cSSatish Balay } 91065d70643SHong Zhang 911b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 912b941877fSHong Zhang /* do diagonal part */ 913b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 914b941877fSHong Zhang /* do supperdiagonal part */ 915b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 916b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 917b941877fSHong Zhang /* do subdiagonal part */ 918b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 919b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 920b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 92165d70643SHong Zhang 922a30f8f8cSSatish Balay PetscFunctionReturn(0); 923a30f8f8cSSatish Balay } 924a30f8f8cSSatish Balay 9254a2ae208SSatish Balay #undef __FUNCT__ 9264a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 927dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 928a30f8f8cSSatish Balay { 929de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 930dfbe8321SBarry Smith PetscErrorCode ierr; 931521d7252SBarry Smith PetscInt mbs=a->mbs,bs=A->bs; 932a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 933a9d4b620SHong Zhang 934a9d4b620SHong Zhang PetscFunctionBegin; 935a9d4b620SHong Zhang /* 93656faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 93756faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 938a9d4b620SHong Zhang */ 939a9d4b620SHong Zhang /* diagonal part */ 940a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9412dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 942a9d4b620SHong Zhang 943a9d4b620SHong Zhang /* subdiagonal part */ 944a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 945a9d4b620SHong Zhang 946a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9471ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9481ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 949a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9501ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 951a9d4b620SHong Zhang 952a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 9531ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 954a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 955a9d4b620SHong Zhang 956a9d4b620SHong Zhang /* supperdiagonal part */ 957a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 958a9d4b620SHong Zhang 959a9d4b620SHong Zhang PetscFunctionReturn(0); 960a9d4b620SHong Zhang } 961a9d4b620SHong Zhang 962a9d4b620SHong Zhang #undef __FUNCT__ 963a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 964dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 965a9d4b620SHong Zhang { 966a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 967dfbe8321SBarry Smith PetscErrorCode ierr; 968a30f8f8cSSatish Balay 969a30f8f8cSSatish Balay PetscFunctionBegin; 970b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 971b941877fSHong Zhang /* do diagonal part */ 972b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 973b941877fSHong Zhang /* do supperdiagonal part */ 974b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 975de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 976de8b6608SHong Zhang 977b941877fSHong Zhang /* do subdiagonal part */ 978a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 979a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 980a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 981aa482183SHong Zhang 982a30f8f8cSSatish Balay PetscFunctionReturn(0); 983a30f8f8cSSatish Balay } 984a30f8f8cSSatish Balay 985a30f8f8cSSatish Balay /* 986a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 987a30f8f8cSSatish Balay diagonal block 988a30f8f8cSSatish Balay */ 9894a2ae208SSatish Balay #undef __FUNCT__ 9904a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 991dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 992a30f8f8cSSatish Balay { 993a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 994dfbe8321SBarry Smith PetscErrorCode ierr; 995a30f8f8cSSatish Balay 996a30f8f8cSSatish Balay PetscFunctionBegin; 99729bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 998a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 999a30f8f8cSSatish Balay PetscFunctionReturn(0); 1000a30f8f8cSSatish Balay } 1001a30f8f8cSSatish Balay 10024a2ae208SSatish Balay #undef __FUNCT__ 10034a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1004f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1005a30f8f8cSSatish Balay { 1006a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1007dfbe8321SBarry Smith PetscErrorCode ierr; 1008a30f8f8cSSatish Balay 1009a30f8f8cSSatish Balay PetscFunctionBegin; 1010f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1011f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1012a30f8f8cSSatish Balay PetscFunctionReturn(0); 1013a30f8f8cSSatish Balay } 1014a30f8f8cSSatish Balay 10154a2ae208SSatish Balay #undef __FUNCT__ 10164a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 10171302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1018a30f8f8cSSatish Balay { 1019a30f8f8cSSatish Balay PetscFunctionBegin; 1020d23016edSBarry Smith if (matin) SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format"); 1021a30f8f8cSSatish Balay PetscFunctionReturn(0); 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay 10244a2ae208SSatish Balay #undef __FUNCT__ 10254a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10261302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1027a30f8f8cSSatish Balay { 1028a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1029a30f8f8cSSatish Balay 1030a30f8f8cSSatish Balay PetscFunctionBegin; 1031abc0a331SBarry Smith if (!baij->getrowactive) { 1032abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1033a30f8f8cSSatish Balay } 1034a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1035a30f8f8cSSatish Balay PetscFunctionReturn(0); 1036a30f8f8cSSatish Balay } 1037a30f8f8cSSatish Balay 10384a2ae208SSatish Balay #undef __FUNCT__ 1039*99cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 1040*99cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1041*99cafbc1SBarry Smith { 1042*99cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1043*99cafbc1SBarry Smith PetscErrorCode ierr; 1044*99cafbc1SBarry Smith 1045*99cafbc1SBarry Smith PetscFunctionBegin; 1046*99cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 1047*99cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 1048*99cafbc1SBarry Smith PetscFunctionReturn(0); 1049*99cafbc1SBarry Smith } 1050*99cafbc1SBarry Smith 1051*99cafbc1SBarry Smith #undef __FUNCT__ 1052*99cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 1053*99cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1054*99cafbc1SBarry Smith { 1055*99cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1056*99cafbc1SBarry Smith PetscErrorCode ierr; 1057*99cafbc1SBarry Smith 1058*99cafbc1SBarry Smith PetscFunctionBegin; 1059*99cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1060*99cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 1061*99cafbc1SBarry Smith PetscFunctionReturn(0); 1062*99cafbc1SBarry Smith } 1063*99cafbc1SBarry Smith 1064*99cafbc1SBarry Smith #undef __FUNCT__ 10654a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1066dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1067a30f8f8cSSatish Balay { 1068a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1069dfbe8321SBarry Smith PetscErrorCode ierr; 1070a30f8f8cSSatish Balay 1071a30f8f8cSSatish Balay PetscFunctionBegin; 1072a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1073a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1074a30f8f8cSSatish Balay PetscFunctionReturn(0); 1075a30f8f8cSSatish Balay } 1076a30f8f8cSSatish Balay 10774a2ae208SSatish Balay #undef __FUNCT__ 10784a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1079dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1080a30f8f8cSSatish Balay { 1081a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1082a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1083dfbe8321SBarry Smith PetscErrorCode ierr; 1084a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1085a30f8f8cSSatish Balay 1086a30f8f8cSSatish Balay PetscFunctionBegin; 1087521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 1088a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1089a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1090a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1091a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1092a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1093a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1094a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1095a30f8f8cSSatish Balay info->nz_used = isend[0]; 1096a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1097a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1098a30f8f8cSSatish Balay info->memory = isend[3]; 1099a30f8f8cSSatish Balay info->mallocs = isend[4]; 1100a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1101d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1102a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1103a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1104a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1105a30f8f8cSSatish Balay info->memory = irecv[3]; 1106a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1107a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1108d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1109a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1110a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1111a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1112a30f8f8cSSatish Balay info->memory = irecv[3]; 1113a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1114a30f8f8cSSatish Balay } else { 111577431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1116a30f8f8cSSatish Balay } 1117f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1118f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1119f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1120f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1121a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1122a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1123a30f8f8cSSatish Balay info->factor_mallocs = 0; 1124a30f8f8cSSatish Balay PetscFunctionReturn(0); 1125a30f8f8cSSatish Balay } 1126a30f8f8cSSatish Balay 11274a2ae208SSatish Balay #undef __FUNCT__ 11284a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1129dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op) 1130a30f8f8cSSatish Balay { 1131a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1132dfbe8321SBarry Smith PetscErrorCode ierr; 1133a30f8f8cSSatish Balay 1134a30f8f8cSSatish Balay PetscFunctionBegin; 1135e98b92d7SKris Buschelman switch (op) { 1136e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1137e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1138e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1139e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1140e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1141e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1142e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1143a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1144a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1145e98b92d7SKris Buschelman break; 1146e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1147a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1148a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1149a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1150e98b92d7SKris Buschelman break; 1151e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1152e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1153e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 115463ba0a88SBarry Smith ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr); 1155e98b92d7SKris Buschelman break; 1156e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1157a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1158a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1159a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1160e98b92d7SKris Buschelman break; 1161e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1162a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1163e98b92d7SKris Buschelman break; 1164e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 116529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1166e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1167a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1168e98b92d7SKris Buschelman break; 11699a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 11709a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 11719a4540c5SBarry Smith case MAT_HERMITIAN: 11729a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 117377e54ba9SKris Buschelman case MAT_SYMMETRIC: 117477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 11759a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 11769a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 11779a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 117877e54ba9SKris Buschelman break; 1179e98b92d7SKris Buschelman default: 118029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay PetscFunctionReturn(0); 1183a30f8f8cSSatish Balay } 1184a30f8f8cSSatish Balay 11854a2ae208SSatish Balay #undef __FUNCT__ 11868115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1187dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B) 1188a30f8f8cSSatish Balay { 1189dfbe8321SBarry Smith PetscErrorCode ierr; 1190a30f8f8cSSatish Balay PetscFunctionBegin; 1191999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 11928115998fSBarry Smith PetscFunctionReturn(0); 1193a30f8f8cSSatish Balay } 1194a30f8f8cSSatish Balay 11954a2ae208SSatish Balay #undef __FUNCT__ 11964a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1197dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1198a30f8f8cSSatish Balay { 1199a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1200a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1201dfbe8321SBarry Smith PetscErrorCode ierr; 12025e90f9d9SHong Zhang PetscInt nv,m,n; 1203b3bf805bSHong Zhang PetscTruth flg; 1204a30f8f8cSSatish Balay 1205a30f8f8cSSatish Balay PetscFunctionBegin; 1206a30f8f8cSSatish Balay if (ll != rr){ 1207b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1208b3bf805bSHong Zhang if (!flg) 120929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1210a30f8f8cSSatish Balay } 1211b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1212b3bf805bSHong Zhang 12135e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12145e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1215b3bf805bSHong Zhang 12165e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12175e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12185e90f9d9SHong Zhang 1219a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 12205e90f9d9SHong Zhang 12215e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1222a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 12235e90f9d9SHong Zhang 12245e90f9d9SHong Zhang /* scale the diagonal part */ 1225a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1226a30f8f8cSSatish Balay 12275e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1228a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1229a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1230a30f8f8cSSatish Balay PetscFunctionReturn(0); 1231a30f8f8cSSatish Balay } 1232a30f8f8cSSatish Balay 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1235dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A) 1236a30f8f8cSSatish Balay { 1237a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1238a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 12391302d50aSBarry Smith static PetscTruth called = PETSC_FALSE; 1240dfbe8321SBarry Smith PetscErrorCode ierr; 1241a30f8f8cSSatish Balay 1242a30f8f8cSSatish Balay PetscFunctionBegin; 1243a30f8f8cSSatish Balay if (!a->rank) { 1244a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1245a30f8f8cSSatish Balay } 12461302d50aSBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1247a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1248a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1249a30f8f8cSSatish Balay PetscFunctionReturn(0); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay 12524a2ae208SSatish Balay #undef __FUNCT__ 12534a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1254dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1255a30f8f8cSSatish Balay { 1256f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1257dfbe8321SBarry Smith PetscErrorCode ierr; 1258a30f8f8cSSatish Balay 1259a30f8f8cSSatish Balay PetscFunctionBegin; 1260a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1261a30f8f8cSSatish Balay PetscFunctionReturn(0); 1262a30f8f8cSSatish Balay } 1263a30f8f8cSSatish Balay 12646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1265a30f8f8cSSatish Balay 12664a2ae208SSatish Balay #undef __FUNCT__ 12674a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1268dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1269a30f8f8cSSatish Balay { 1270a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1271a30f8f8cSSatish Balay Mat a,b,c,d; 1272a30f8f8cSSatish Balay PetscTruth flg; 1273dfbe8321SBarry Smith PetscErrorCode ierr; 1274a30f8f8cSSatish Balay 1275a30f8f8cSSatish Balay PetscFunctionBegin; 1276a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1277a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1278a30f8f8cSSatish Balay 1279a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1280abc0a331SBarry Smith if (flg) { 1281a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1282a30f8f8cSSatish Balay } 1283a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1284a30f8f8cSSatish Balay PetscFunctionReturn(0); 1285a30f8f8cSSatish Balay } 1286a30f8f8cSSatish Balay 12874a2ae208SSatish Balay #undef __FUNCT__ 12884a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1289dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1290273d9f13SBarry Smith { 1291dfbe8321SBarry Smith PetscErrorCode ierr; 1292273d9f13SBarry Smith 1293273d9f13SBarry Smith PetscFunctionBegin; 1294273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1295273d9f13SBarry Smith PetscFunctionReturn(0); 1296273d9f13SBarry Smith } 1297a5e6ed63SBarry Smith 1298a5e6ed63SBarry Smith #undef __FUNCT__ 1299a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 13001302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1301a5e6ed63SBarry Smith { 13026849ba73SBarry Smith PetscErrorCode ierr; 13031302d50aSBarry Smith PetscInt i; 1304a5e6ed63SBarry Smith PetscTruth flg; 1305a5e6ed63SBarry Smith 13066849ba73SBarry Smith PetscFunctionBegin; 1307a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1308a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1309a5e6ed63SBarry Smith if (!flg) { 13101302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1311a5e6ed63SBarry Smith } 1312a5e6ed63SBarry Smith } 1313a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1314a5e6ed63SBarry Smith PetscFunctionReturn(0); 1315a5e6ed63SBarry Smith } 1316a5e6ed63SBarry Smith 1317a5e6ed63SBarry Smith 1318a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1319a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1320a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1321a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1322a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1323a9d4b620SHong Zhang MatMult_MPISBAIJ, 132497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1325431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1326431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1327a30f8f8cSSatish Balay 0, 1328a30f8f8cSSatish Balay 0, 1329a30f8f8cSSatish Balay 0, 133097304618SKris Buschelman /*10*/ 0, 1331a30f8f8cSSatish Balay 0, 1332a30f8f8cSSatish Balay 0, 13332798e883SHong Zhang MatRelax_MPISBAIJ, 1334a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 133597304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1336a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1337a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1338a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1339a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 134097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1341a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1342a30f8f8cSSatish Balay 0, 1343a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1344a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1345dcf5cc72SBarry Smith /*25*/ 0, 1346a30f8f8cSSatish Balay 0, 1347a30f8f8cSSatish Balay 0, 1348a30f8f8cSSatish Balay 0, 1349a30f8f8cSSatish Balay 0, 135097304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1351b5df2d14SHong Zhang 0, 1352a30f8f8cSSatish Balay 0, 1353a30f8f8cSSatish Balay 0, 1354a30f8f8cSSatish Balay 0, 135597304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1356a30f8f8cSSatish Balay 0, 1357a30f8f8cSSatish Balay 0, 1358a30f8f8cSSatish Balay 0, 1359a30f8f8cSSatish Balay 0, 136097304618SKris Buschelman /*40*/ 0, 1361a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1362d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1363a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1364a30f8f8cSSatish Balay 0, 136597304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1366a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1367a30f8f8cSSatish Balay 0, 1368a30f8f8cSSatish Balay 0, 1369a30f8f8cSSatish Balay 0, 1370521d7252SBarry Smith /*50*/ 0, 1371a30f8f8cSSatish Balay 0, 1372a30f8f8cSSatish Balay 0, 1373a30f8f8cSSatish Balay 0, 1374a30f8f8cSSatish Balay 0, 137597304618SKris Buschelman /*55*/ 0, 1376a30f8f8cSSatish Balay 0, 1377a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1378a30f8f8cSSatish Balay 0, 1379a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 138097304618SKris Buschelman /*60*/ 0, 1381a30f8f8cSSatish Balay 0, 1382a30f8f8cSSatish Balay 0, 13838a124369SBarry Smith MatGetPetscMaps_Petsc, 138424d5174aSHong Zhang 0, 138597304618SKris Buschelman /*65*/ 0, 138624d5174aSHong Zhang 0, 138724d5174aSHong Zhang 0, 138824d5174aSHong Zhang 0, 138924d5174aSHong Zhang 0, 139097304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 139124d5174aSHong Zhang 0, 139297304618SKris Buschelman 0, 139397304618SKris Buschelman 0, 139497304618SKris Buschelman 0, 139597304618SKris Buschelman /*75*/ 0, 139697304618SKris Buschelman 0, 139797304618SKris Buschelman 0, 139897304618SKris Buschelman 0, 139997304618SKris Buschelman 0, 140097304618SKris Buschelman /*80*/ 0, 140197304618SKris Buschelman 0, 140297304618SKris Buschelman 0, 140397304618SKris Buschelman 0, 1404865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1405865e5f61SKris Buschelman /*85*/ 0, 1406865e5f61SKris Buschelman 0, 1407865e5f61SKris Buschelman 0, 1408865e5f61SKris Buschelman 0, 1409865e5f61SKris Buschelman 0, 1410865e5f61SKris Buschelman /*90*/ 0, 1411865e5f61SKris Buschelman 0, 1412865e5f61SKris Buschelman 0, 1413865e5f61SKris Buschelman 0, 1414865e5f61SKris Buschelman 0, 1415865e5f61SKris Buschelman /*95*/ 0, 1416865e5f61SKris Buschelman 0, 1417865e5f61SKris Buschelman 0, 1418*99cafbc1SBarry Smith 0, 1419*99cafbc1SBarry Smith 0, 1420*99cafbc1SBarry Smith /*100*/0, 1421*99cafbc1SBarry Smith 0, 1422*99cafbc1SBarry Smith 0, 1423*99cafbc1SBarry Smith 0, 1424*99cafbc1SBarry Smith 0, 1425*99cafbc1SBarry Smith /*105*/0, 1426*99cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1427*99cafbc1SBarry Smith MatImaginaryPart_MPISBAIJ 1428*99cafbc1SBarry Smith }; 1429a30f8f8cSSatish Balay 1430a30f8f8cSSatish Balay 1431a30f8f8cSSatish Balay EXTERN_C_BEGIN 14324a2ae208SSatish Balay #undef __FUNCT__ 14334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1434be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1435a30f8f8cSSatish Balay { 1436a30f8f8cSSatish Balay PetscFunctionBegin; 1437a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1438a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1439a30f8f8cSSatish Balay PetscFunctionReturn(0); 1440a30f8f8cSSatish Balay } 1441a30f8f8cSSatish Balay EXTERN_C_END 1442a30f8f8cSSatish Balay 1443273d9f13SBarry Smith EXTERN_C_BEGIN 14444a2ae208SSatish Balay #undef __FUNCT__ 1445a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1446be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1447a23d5eceSKris Buschelman { 1448a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1449dfbe8321SBarry Smith PetscErrorCode ierr; 14501302d50aSBarry Smith PetscInt i,mbs,Mbs; 1451a23d5eceSKris Buschelman 1452a23d5eceSKris Buschelman PetscFunctionBegin; 1453a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1454a23d5eceSKris Buschelman 1455a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1456a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1457a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 145877431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 145977431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1460a23d5eceSKris Buschelman if (d_nnz) { 1461a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 146277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1463a23d5eceSKris Buschelman } 1464a23d5eceSKris Buschelman } 1465a23d5eceSKris Buschelman if (o_nnz) { 1466a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 146777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1468a23d5eceSKris Buschelman } 1469a23d5eceSKris Buschelman } 1470a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1471a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1472a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1473a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1474a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1475a23d5eceSKris Buschelman 1476a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1477a23d5eceSKris Buschelman mbs = B->m/bs; 1478a23d5eceSKris Buschelman Mbs = B->M/bs; 1479a23d5eceSKris Buschelman if (mbs*bs != B->m) { 148077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs); 1481a23d5eceSKris Buschelman } 1482a23d5eceSKris Buschelman 1483521d7252SBarry Smith B->bs = bs; 1484a23d5eceSKris Buschelman b->bs2 = bs*bs; 1485a23d5eceSKris Buschelman b->mbs = mbs; 1486a23d5eceSKris Buschelman b->nbs = mbs; 1487a23d5eceSKris Buschelman b->Mbs = Mbs; 1488a23d5eceSKris Buschelman b->Nbs = Mbs; 1489a23d5eceSKris Buschelman 1490a7cc72afSBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 1491a23d5eceSKris Buschelman b->rowners[0] = 0; 1492a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1493a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1494a23d5eceSKris Buschelman } 1495a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1496a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1497a23d5eceSKris Buschelman b->cstart = b->rstart; 1498a23d5eceSKris Buschelman b->cend = b->rend; 1499a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1500a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1501a23d5eceSKris Buschelman } 1502a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1503a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1504a23d5eceSKris Buschelman 1505a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1506a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1507a23d5eceSKris Buschelman 1508f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1509f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->A,B->m,B->m,B->m,B->m);CHKERRQ(ierr); 15109c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1511c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 151252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 15139c097c71SKris Buschelman 1514f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1515f69a0ea3SMatthew Knepley ierr = MatSetSizes(b->B,B->m,B->M,B->m,B->M);CHKERRQ(ierr); 15164aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1517589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 151852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1519a23d5eceSKris Buschelman 1520a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1521a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1522a23d5eceSKris Buschelman 1523a23d5eceSKris Buschelman PetscFunctionReturn(0); 1524a23d5eceSKris Buschelman } 1525a23d5eceSKris Buschelman EXTERN_C_END 1526a23d5eceSKris Buschelman 15270bad9183SKris Buschelman /*MC 1528fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 15290bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 15300bad9183SKris Buschelman 15310bad9183SKris Buschelman Options Database Keys: 15320bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 15330bad9183SKris Buschelman 15340bad9183SKris Buschelman Level: beginner 15350bad9183SKris Buschelman 15360bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 15370bad9183SKris Buschelman M*/ 15380bad9183SKris Buschelman 1539a23d5eceSKris Buschelman EXTERN_C_BEGIN 1540a23d5eceSKris Buschelman #undef __FUNCT__ 15414a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1542be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1543b5df2d14SHong Zhang { 1544b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1545dfbe8321SBarry Smith PetscErrorCode ierr; 1546b5df2d14SHong Zhang PetscTruth flg; 1547b5df2d14SHong Zhang 1548b5df2d14SHong Zhang PetscFunctionBegin; 1549b5df2d14SHong Zhang 1550b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1551b0a32e0cSBarry Smith B->data = (void*)b; 1552b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1553b5df2d14SHong Zhang 1554b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1555b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1556b5df2d14SHong Zhang B->mapping = 0; 1557b5df2d14SHong Zhang B->factor = 0; 1558b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1559b5df2d14SHong Zhang 1560b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1561b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1562b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1563b5df2d14SHong Zhang 1564b5df2d14SHong Zhang /* build local table of row and column ownerships */ 15651302d50aSBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 1566273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1567273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 156852e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1569b5df2d14SHong Zhang 1570b5df2d14SHong Zhang /* build cache for off array entries formed */ 1571b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1572b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1573b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1574b5df2d14SHong Zhang b->garray = PETSC_NULL; 1575b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1576b5df2d14SHong Zhang 1577f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1578b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 157964a35ccbSBarry Smith b->setvalueslen = 0; 1580b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1581b5df2d14SHong Zhang #endif 1582b5df2d14SHong Zhang 1583b5df2d14SHong Zhang /* stuff used in block assembly */ 1584b5df2d14SHong Zhang b->barray = 0; 1585b5df2d14SHong Zhang 1586b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1587b5df2d14SHong Zhang b->lvec = 0; 1588b5df2d14SHong Zhang b->Mvctx = 0; 158940781036SHong Zhang b->slvec0 = 0; 159040781036SHong Zhang b->slvec0b = 0; 159140781036SHong Zhang b->slvec1 = 0; 159240781036SHong Zhang b->slvec1a = 0; 159340781036SHong Zhang b->slvec1b = 0; 159440781036SHong Zhang b->sMvctx = 0; 1595b5df2d14SHong Zhang 1596b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1597b5df2d14SHong Zhang b->rowindices = 0; 1598b5df2d14SHong Zhang b->rowvalues = 0; 1599b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1600b5df2d14SHong Zhang 1601b5df2d14SHong Zhang /* hash table stuff */ 1602b5df2d14SHong Zhang b->ht = 0; 1603b5df2d14SHong Zhang b->hd = 0; 1604b5df2d14SHong Zhang b->ht_size = 0; 1605b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1606b5df2d14SHong Zhang b->ht_fact = 0; 1607b5df2d14SHong Zhang b->ht_total_ct = 0; 1608b5df2d14SHong Zhang b->ht_insert_ct = 0; 1609b5df2d14SHong Zhang 1610e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1611b5df2d14SHong Zhang if (flg) { 1612f6275e2eSBarry Smith PetscReal fact = 1.39; 1613b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1614e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1615b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1616b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 161763ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr); 1618b5df2d14SHong Zhang } 1619b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1620b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1621b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1622b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1623b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1624b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1625b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1626b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1627b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1628a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1629a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1630a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 163123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 163223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 163323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 163423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1635b5df2d14SHong Zhang PetscFunctionReturn(0); 1636b5df2d14SHong Zhang } 1637273d9f13SBarry Smith EXTERN_C_END 1638b5df2d14SHong Zhang 1639209238afSKris Buschelman /*MC 1640002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1641209238afSKris Buschelman 1642209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1643209238afSKris Buschelman and MATMPISBAIJ otherwise. 1644209238afSKris Buschelman 1645209238afSKris Buschelman Options Database Keys: 1646209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1647209238afSKris Buschelman 1648209238afSKris Buschelman Level: beginner 1649209238afSKris Buschelman 1650209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1651209238afSKris Buschelman M*/ 1652209238afSKris Buschelman 1653209238afSKris Buschelman EXTERN_C_BEGIN 1654209238afSKris Buschelman #undef __FUNCT__ 1655209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1656be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1657dfbe8321SBarry Smith { 16586849ba73SBarry Smith PetscErrorCode ierr; 16591302d50aSBarry Smith PetscMPIInt size; 1660209238afSKris Buschelman 1661209238afSKris Buschelman PetscFunctionBegin; 1662209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1663209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1664209238afSKris Buschelman if (size == 1) { 1665209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1666209238afSKris Buschelman } else { 1667209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1668209238afSKris Buschelman } 1669209238afSKris Buschelman PetscFunctionReturn(0); 1670209238afSKris Buschelman } 1671209238afSKris Buschelman EXTERN_C_END 1672209238afSKris Buschelman 16734a2ae208SSatish Balay #undef __FUNCT__ 16744a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1675b5df2d14SHong Zhang /*@C 1676b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1677b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1678b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1679b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1680b5df2d14SHong Zhang 1681b5df2d14SHong Zhang Collective on Mat 1682b5df2d14SHong Zhang 1683b5df2d14SHong Zhang Input Parameters: 1684b5df2d14SHong Zhang + A - the matrix 1685b5df2d14SHong Zhang . bs - size of blockk 1686b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1687b5df2d14SHong Zhang submatrix (same for all local rows) 1688b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 16896d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 16906d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 16916d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1692b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1693b5df2d14SHong Zhang submatrix (same for all local rows). 1694b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1695b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1696b5df2d14SHong Zhang each block row) or PETSC_NULL. 1697b5df2d14SHong Zhang 1698b5df2d14SHong Zhang 1699b5df2d14SHong Zhang Options Database Keys: 1700b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1701b5df2d14SHong Zhang block calculations (much slower) 1702b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1703b5df2d14SHong Zhang 1704b5df2d14SHong Zhang Notes: 1705b5df2d14SHong Zhang 1706b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1707b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1708b5df2d14SHong Zhang 170949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 171049a6f317SBarry Smith 1711b5df2d14SHong Zhang Storage Information: 1712b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1713b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1714b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1715b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1716b5df2d14SHong Zhang 1717b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1718b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1719b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1720b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1721b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1722b5df2d14SHong Zhang 1723b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1724b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1725b5df2d14SHong Zhang 1726b5df2d14SHong Zhang .vb 1727b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1728b5df2d14SHong Zhang ------------------- 1729b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1730b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1731b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1732b5df2d14SHong Zhang ------------------- 1733b5df2d14SHong Zhang .ve 1734b5df2d14SHong Zhang 1735b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1736b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 17376d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 17386d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1739b5df2d14SHong Zhang 17406d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 17416d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1742b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1743b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1744b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1745b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1746b5df2d14SHong Zhang matrices. 1747b5df2d14SHong Zhang 1748b5df2d14SHong Zhang Level: intermediate 1749b5df2d14SHong Zhang 1750b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1751b5df2d14SHong Zhang 1752b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1753b5df2d14SHong Zhang @*/ 1754be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1755b5df2d14SHong Zhang { 17561302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1757b5df2d14SHong Zhang 1758b5df2d14SHong Zhang PetscFunctionBegin; 1759a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1760a23d5eceSKris Buschelman if (f) { 1761a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1762b5df2d14SHong Zhang } 1763b5df2d14SHong Zhang PetscFunctionReturn(0); 1764b5df2d14SHong Zhang } 1765b5df2d14SHong Zhang 17664a2ae208SSatish Balay #undef __FUNCT__ 17674a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1768a30f8f8cSSatish Balay /*@C 1769a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1770a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1771a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1772a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1773a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1774a30f8f8cSSatish Balay 1775a30f8f8cSSatish Balay Collective on MPI_Comm 1776a30f8f8cSSatish Balay 1777a30f8f8cSSatish Balay Input Parameters: 1778a30f8f8cSSatish Balay + comm - MPI communicator 1779a30f8f8cSSatish Balay . bs - size of blockk 1780a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1781a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1782a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1783a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1784a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1785a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1786a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1787a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1788a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1789a30f8f8cSSatish Balay submatrix (same for all local rows) 1790a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 17916d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 17926d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 17936d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1794a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1795a30f8f8cSSatish Balay submatrix (same for all local rows). 1796a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1797a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1798a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1799a30f8f8cSSatish Balay 1800a30f8f8cSSatish Balay Output Parameter: 1801a30f8f8cSSatish Balay . A - the matrix 1802a30f8f8cSSatish Balay 1803a30f8f8cSSatish Balay Options Database Keys: 1804a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1805a30f8f8cSSatish Balay block calculations (much slower) 1806a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1807a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1808a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1809a30f8f8cSSatish Balay 1810a30f8f8cSSatish Balay Notes: 1811d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 1812d1be2dadSMatthew Knepley 1813a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1814a30f8f8cSSatish Balay (possibly both). 1815a30f8f8cSSatish Balay 1816a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1817a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1818a30f8f8cSSatish Balay 181949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 182049a6f317SBarry Smith 1821a30f8f8cSSatish Balay Storage Information: 1822a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1823a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1824a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1825a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1826a30f8f8cSSatish Balay 1827a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1828a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1829a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1830a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1831a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1832a30f8f8cSSatish Balay 1833a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1834a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1835a30f8f8cSSatish Balay 1836a30f8f8cSSatish Balay .vb 1837a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1838a30f8f8cSSatish Balay ------------------- 1839a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1840a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1841a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1842a30f8f8cSSatish Balay ------------------- 1843a30f8f8cSSatish Balay .ve 1844a30f8f8cSSatish Balay 1845a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1846a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 18476d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18486d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1849a30f8f8cSSatish Balay 18506d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18516d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1852a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1853a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1854a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1855a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1856a30f8f8cSSatish Balay matrices. 1857a30f8f8cSSatish Balay 1858a30f8f8cSSatish Balay Level: intermediate 1859a30f8f8cSSatish Balay 1860a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1861a30f8f8cSSatish Balay 1862a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1863a30f8f8cSSatish Balay @*/ 1864a30f8f8cSSatish Balay 1865be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1866a30f8f8cSSatish Balay { 18676849ba73SBarry Smith PetscErrorCode ierr; 18681302d50aSBarry Smith PetscMPIInt size; 1869a30f8f8cSSatish Balay 1870a30f8f8cSSatish Balay PetscFunctionBegin; 1871f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1872f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1873273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1874273d9f13SBarry Smith if (size > 1) { 1875b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1876b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1877273d9f13SBarry Smith } else { 1878273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1879273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1880273d9f13SBarry Smith } 1881a30f8f8cSSatish Balay PetscFunctionReturn(0); 1882a30f8f8cSSatish Balay } 1883a30f8f8cSSatish Balay 1884a30f8f8cSSatish Balay 18854a2ae208SSatish Balay #undef __FUNCT__ 18864a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 18876849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1888a30f8f8cSSatish Balay { 1889a30f8f8cSSatish Balay Mat mat; 1890a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1891dfbe8321SBarry Smith PetscErrorCode ierr; 1892521d7252SBarry Smith PetscInt len=0,nt,bs=matin->bs,mbs=oldmat->mbs; 1893387bc808SHong Zhang PetscScalar *array; 1894a30f8f8cSSatish Balay 1895a30f8f8cSSatish Balay PetscFunctionBegin; 1896a30f8f8cSSatish Balay *newmat = 0; 1897f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 1898f69a0ea3SMatthew Knepley ierr = MatSetSizes(mat,matin->m,matin->n,matin->M,matin->N);CHKERRQ(ierr); 1899be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 19001d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1901e1b6402fSHong Zhang 190282327fa8SHong Zhang mat->factor = matin->factor; 1903273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 190482327fa8SHong Zhang mat->assembled = PETSC_TRUE; 19057fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 19067fff6886SHong Zhang 1907b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1908521d7252SBarry Smith mat->bs = matin->bs; 1909a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1910a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1911a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1912a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1913a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1914a30f8f8cSSatish Balay 1915a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1916a30f8f8cSSatish Balay a->rend = oldmat->rend; 1917a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1918a30f8f8cSSatish Balay a->cend = oldmat->cend; 1919a30f8f8cSSatish Balay a->size = oldmat->size; 1920a30f8f8cSSatish Balay a->rank = oldmat->rank; 1921a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1922a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1923a30f8f8cSSatish Balay a->rowindices = 0; 1924a30f8f8cSSatish Balay a->rowvalues = 0; 1925a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1926a30f8f8cSSatish Balay a->barray = 0; 1927a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1928a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1929a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1930a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1931a30f8f8cSSatish Balay 1932a30f8f8cSSatish Balay /* hash table stuff */ 1933a30f8f8cSSatish Balay a->ht = 0; 1934a30f8f8cSSatish Balay a->hd = 0; 1935a30f8f8cSSatish Balay a->ht_size = 0; 1936a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1937a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1938a30f8f8cSSatish Balay a->ht_total_ct = 0; 1939a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1940a30f8f8cSSatish Balay 19411302d50aSBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 1942a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1943521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 1944a30f8f8cSSatish Balay if (oldmat->colmap) { 1945a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1946a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1947a30f8f8cSSatish Balay #else 19481302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 194952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 19501302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 1951a30f8f8cSSatish Balay #endif 1952a30f8f8cSSatish Balay } else a->colmap = 0; 1953387bc808SHong Zhang 1954a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 19551302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 195652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 19571302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 1958a30f8f8cSSatish Balay } else a->garray = 0; 1959a30f8f8cSSatish Balay 1960a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 196152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 1962a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 196352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 196482327fa8SHong Zhang 196582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 196652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 196782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 196852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 1969387bc808SHong Zhang 1970387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 19711ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 1972387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 1973387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 19741ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 19751ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 1976387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 19771ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 197852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 197952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 198052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 198152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 198252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 1983387bc808SHong Zhang 1984387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 1985387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 1986387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 198752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 198882327fa8SHong Zhang 1989a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 199052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1991a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 199252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 1993b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1994a30f8f8cSSatish Balay *newmat = mat; 1995a30f8f8cSSatish Balay PetscFunctionReturn(0); 1996a30f8f8cSSatish Balay } 1997a30f8f8cSSatish Balay 1998a30f8f8cSSatish Balay #include "petscsys.h" 1999a30f8f8cSSatish Balay 20004a2ae208SSatish Balay #undef __FUNCT__ 20014a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2002f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 2003a30f8f8cSSatish Balay { 2004a30f8f8cSSatish Balay Mat A; 20056849ba73SBarry Smith PetscErrorCode ierr; 200613f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 200787828ca2SBarry Smith PetscScalar *vals,*buf; 2008a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2009a30f8f8cSSatish Balay MPI_Status status; 20102fd7e33dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens; 201113f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 20122fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 20131302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 20141302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 20151302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 201613f74950SBarry Smith int fd; 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay PetscFunctionBegin; 2019b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2022a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2023a30f8f8cSSatish Balay if (!rank) { 2024b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2025a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2026552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2027a30f8f8cSSatish Balay if (header[3] < 0) { 202829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2029a30f8f8cSSatish Balay } 2030a30f8f8cSSatish Balay } 2031a30f8f8cSSatish Balay 2032a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2033a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2034a30f8f8cSSatish Balay 203529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2036a30f8f8cSSatish Balay 2037a30f8f8cSSatish Balay /* 2038a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2039a30f8f8cSSatish Balay divisible by the blocksize 2040a30f8f8cSSatish Balay */ 2041a30f8f8cSSatish Balay Mbs = M/bs; 2042a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2043a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2044a30f8f8cSSatish Balay else Mbs++; 2045a30f8f8cSSatish Balay if (extra_rows &&!rank) { 204663ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 2047a30f8f8cSSatish Balay } 2048a30f8f8cSSatish Balay 2049a30f8f8cSSatish Balay /* determine ownership of all rows */ 2050a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2051a30f8f8cSSatish Balay m = mbs*bs; 2052a7cc72afSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 2053a30f8f8cSSatish Balay browners = rowners + size + 1; 2054a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2055a30f8f8cSSatish Balay rowners[0] = 0; 2056a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2057a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2058a30f8f8cSSatish Balay rstart = rowners[rank]; 2059a30f8f8cSSatish Balay rend = rowners[rank+1]; 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 20622fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2063a30f8f8cSSatish Balay if (!rank) { 20641302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2065a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2066a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2067a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2068a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2069a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2070a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2071a30f8f8cSSatish Balay } else { 2072a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay } 2074a30f8f8cSSatish Balay 20750222edb1SHong Zhang if (!rank) { /* procs[0] */ 2076a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 20771302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 20781302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2079a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2080a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2081a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2082a30f8f8cSSatish Balay } 2083a30f8f8cSSatish Balay } 2084a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2085a30f8f8cSSatish Balay 2086a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2087a30f8f8cSSatish Balay maxnz = 0; 2088a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2089a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2090a30f8f8cSSatish Balay } 20911302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2092a30f8f8cSSatish Balay 2093a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2094a30f8f8cSSatish Balay nz = procsnz[0]; 20951302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2096a30f8f8cSSatish Balay mycols = ibuf; 2097a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2098a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2100a30f8f8cSSatish Balay 2101a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2102a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2103a30f8f8cSSatish Balay nz = procsnz[i]; 2104a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2105a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay } 2107a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2108a30f8f8cSSatish Balay if (size != 1) { 2109a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2110a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2112a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2113a30f8f8cSSatish Balay } 2114a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21150222edb1SHong Zhang } else { /* procs[i], i>0 */ 2116a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2117a30f8f8cSSatish Balay nz = 0; 2118a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2119a30f8f8cSSatish Balay nz += locrowlens[i]; 2120a30f8f8cSSatish Balay } 21211302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2122a30f8f8cSSatish Balay mycols = ibuf; 2123a30f8f8cSSatish Balay /* receive message of column indices*/ 2124a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2125a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 212629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2127a30f8f8cSSatish Balay } 2128a30f8f8cSSatish Balay 2129a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 21301302d50aSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 21321302d50aSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 21331302d50aSBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2134a30f8f8cSSatish Balay masked1 = mask + Mbs; 2135a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2136a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2137a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2138a30f8f8cSSatish Balay dcount = 0; 2139a30f8f8cSSatish Balay odcount = 0; 2140a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2141a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2142a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21430222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2144a30f8f8cSSatish Balay if (!mask[tmp]) { 2145a30f8f8cSSatish Balay mask[tmp] = 1; 21460222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21470222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2148a30f8f8cSSatish Balay } 2149a30f8f8cSSatish Balay } 2150a30f8f8cSSatish Balay rowcount++; 2151a30f8f8cSSatish Balay } 2152a30f8f8cSSatish Balay 21530222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21540222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2155a30f8f8cSSatish Balay 2156a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2157a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2158a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2159a30f8f8cSSatish Balay } 2160a30f8f8cSSatish Balay 2161a30f8f8cSSatish Balay /* create our matrix */ 2162f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2163f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 216422191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 216522191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2166273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay 2168a30f8f8cSSatish Balay if (!rank) { 216987828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2170a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2171a30f8f8cSSatish Balay nz = procsnz[0]; 2172a30f8f8cSSatish Balay vals = buf; 2173a30f8f8cSSatish Balay mycols = ibuf; 2174a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2175a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2176a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2177a30f8f8cSSatish Balay 2178a30f8f8cSSatish Balay /* insert into matrix */ 2179a30f8f8cSSatish Balay jj = rstart*bs; 2180a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21817e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay mycols += locrowlens[i]; 2183a30f8f8cSSatish Balay vals += locrowlens[i]; 2184a30f8f8cSSatish Balay jj++; 2185a30f8f8cSSatish Balay } 21867e06b45fSHong Zhang 2187a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2188a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2189a30f8f8cSSatish Balay nz = procsnz[i]; 2190a30f8f8cSSatish Balay vals = buf; 2191a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2193a30f8f8cSSatish Balay } 2194a30f8f8cSSatish Balay /* the last proc */ 2195a30f8f8cSSatish Balay if (size != 1){ 2196a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2197a30f8f8cSSatish Balay vals = buf; 2198a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2200a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay } 2202a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22037e06b45fSHong Zhang 2204a30f8f8cSSatish Balay } else { 2205a30f8f8cSSatish Balay /* receive numeric values */ 220687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay 2208a30f8f8cSSatish Balay /* receive message of values*/ 2209a30f8f8cSSatish Balay vals = buf; 2210a30f8f8cSSatish Balay mycols = ibuf; 2211a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 221329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2214a30f8f8cSSatish Balay 2215a30f8f8cSSatish Balay /* insert into matrix */ 2216a30f8f8cSSatish Balay jj = rstart*bs; 2217a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2218a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay mycols += locrowlens[i]; 2220a30f8f8cSSatish Balay vals += locrowlens[i]; 2221a30f8f8cSSatish Balay jj++; 2222a30f8f8cSSatish Balay } 2223a30f8f8cSSatish Balay } 22247e06b45fSHong Zhang 2225a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2228a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 223322191285SKris Buschelman *newmat = A; 2234a30f8f8cSSatish Balay PetscFunctionReturn(0); 2235a30f8f8cSSatish Balay } 2236a30f8f8cSSatish Balay 22374a2ae208SSatish Balay #undef __FUNCT__ 22384a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2239dcf5cc72SBarry Smith /*XXXXX@ 2240a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2241a30f8f8cSSatish Balay 2242a30f8f8cSSatish Balay Input Parameters: 2243a30f8f8cSSatish Balay . mat - the matrix 2244a30f8f8cSSatish Balay . fact - factor 2245a30f8f8cSSatish Balay 2246a30f8f8cSSatish Balay Collective on Mat 2247a30f8f8cSSatish Balay 2248a30f8f8cSSatish Balay Level: advanced 2249a30f8f8cSSatish Balay 2250a30f8f8cSSatish Balay Notes: 2251a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2252a30f8f8cSSatish Balay 2253a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2254a30f8f8cSSatish Balay 2255a30f8f8cSSatish Balay .seealso: MatSetOption() 2256dcf5cc72SBarry Smith @XXXXX*/ 2257dcf5cc72SBarry Smith 225824d5174aSHong Zhang 22594a2ae208SSatish Balay #undef __FUNCT__ 22604a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 2261dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v) 226224d5174aSHong Zhang { 226324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2264f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2265ca54ac64SHong Zhang PetscReal atmp; 226687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2267dfbe8321SBarry Smith PetscErrorCode ierr; 22681302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 22691302d50aSBarry Smith PetscMPIInt rank,size; 22701302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 227187828ca2SBarry Smith PetscScalar *va; 22728a1c53f2SBarry Smith MatScalar *ba; 2273f4c0e9e4SHong Zhang MPI_Status stat; 227424d5174aSHong Zhang 227524d5174aSHong Zhang PetscFunctionBegin; 2276d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 22771ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2278f4c0e9e4SHong Zhang 227956faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 228056faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2281f4c0e9e4SHong Zhang 2282521d7252SBarry Smith bs = A->bs; 2283f4c0e9e4SHong Zhang mbs = a->mbs; 2284f4c0e9e4SHong Zhang Mbs = a->Mbs; 2285f4c0e9e4SHong Zhang ba = b->a; 2286f4c0e9e4SHong Zhang bi = b->i; 2287f4c0e9e4SHong Zhang bj = b->j; 2288f4c0e9e4SHong Zhang 2289f4c0e9e4SHong Zhang /* find ownerships */ 2290f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2291f4c0e9e4SHong Zhang 2292f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 229382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2294ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2295f4c0e9e4SHong Zhang 2296f4c0e9e4SHong Zhang /* row_max for B */ 2297b8475685SHong Zhang if (rank != size-1){ 2298f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2299f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2300f4c0e9e4SHong Zhang brow = bs*i; 2301f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2302f4c0e9e4SHong Zhang bcol = bs*(*bj); 2303f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2304ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 230504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2306f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2307f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2308ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2309ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2310f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2311f4c0e9e4SHong Zhang } 2312f4c0e9e4SHong Zhang } 2313f4c0e9e4SHong Zhang bj++; 2314f4c0e9e4SHong Zhang } 2315f4c0e9e4SHong Zhang } 2316f4c0e9e4SHong Zhang 2317f4c0e9e4SHong Zhang /* send values to its owners */ 2318f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2319f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2320ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 232156faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2322ca54ac64SHong Zhang } 2323f4c0e9e4SHong Zhang } 2324f4c0e9e4SHong Zhang 2325f4c0e9e4SHong Zhang /* receive values */ 2326ca54ac64SHong Zhang if (rank){ 2327f4c0e9e4SHong Zhang rvalues = work; 2328ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2329f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 233056faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2331f4c0e9e4SHong Zhang /* process values */ 2332f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2333ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2334f4c0e9e4SHong Zhang } 2335f4c0e9e4SHong Zhang } 2336ca54ac64SHong Zhang } 2337f4c0e9e4SHong Zhang 23381ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2339ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 234024d5174aSHong Zhang PetscFunctionReturn(0); 234124d5174aSHong Zhang } 23422798e883SHong Zhang 23432798e883SHong Zhang #undef __FUNCT__ 23442798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 23451302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 23462798e883SHong Zhang { 23472798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2348dfbe8321SBarry Smith PetscErrorCode ierr; 2349521d7252SBarry Smith PetscInt mbs=mat->mbs,bs=matin->bs; 2350efb30889SBarry Smith PetscScalar *x,*b,*ptr,zero=0.0; 2351ffe4fb16SHong Zhang Vec bb1; 2352ffe4fb16SHong Zhang 2353ffe4fb16SHong Zhang PetscFunctionBegin; 235477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2355ffe4fb16SHong Zhang if (bs > 1) 2356ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2357ffe4fb16SHong Zhang 2358ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2359ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2360ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2361ffe4fb16SHong Zhang its--; 2362ffe4fb16SHong Zhang } 2363ffe4fb16SHong Zhang 2364ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2365ffe4fb16SHong Zhang while (its--){ 2366ffe4fb16SHong Zhang 2367ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2368ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2369ffe4fb16SHong Zhang 2370ffe4fb16SHong Zhang /* copy xx into slvec0a */ 23711ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 23721ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2373ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23741ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2375ffe4fb16SHong Zhang 2376efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2377ffe4fb16SHong Zhang 2378ffe4fb16SHong Zhang /* copy bb into slvec1a */ 23791ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 23801ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2381ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 23821ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2383ffe4fb16SHong Zhang 2384ffe4fb16SHong Zhang /* set slvec1b = 0 */ 23852dcb1b2aSMatthew Knepley ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr); 2386ffe4fb16SHong Zhang 2387ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 23881ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 23891ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2390ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2391ffe4fb16SHong Zhang 2392ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2393ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2394ffe4fb16SHong Zhang 2395ffe4fb16SHong Zhang /* local diagonal sweep */ 2396ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2397ffe4fb16SHong Zhang } 2398ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2399ffe4fb16SHong Zhang } else { 2400ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2401ffe4fb16SHong Zhang } 2402ffe4fb16SHong Zhang PetscFunctionReturn(0); 2403ffe4fb16SHong Zhang } 2404ffe4fb16SHong Zhang 2405ffe4fb16SHong Zhang #undef __FUNCT__ 2406ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 24071302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2408ffe4fb16SHong Zhang { 2409ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2410dfbe8321SBarry Smith PetscErrorCode ierr; 24112798e883SHong Zhang Vec lvec1,bb1; 24122798e883SHong Zhang 24132798e883SHong Zhang PetscFunctionBegin; 241477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2415521d7252SBarry Smith if (matin->bs > 1) 24162798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24172798e883SHong Zhang 2418c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 24192798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2420bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 24212798e883SHong Zhang its--; 24222798e883SHong Zhang } 24232798e883SHong Zhang 24242798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 24252798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24262798e883SHong Zhang while (its--){ 24272798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24282798e883SHong Zhang 24292798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 24302798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2431efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 24322798e883SHong Zhang 24332798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 24342798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 24352798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24362798e883SHong Zhang 24372798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2438efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 24392798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 24402798e883SHong Zhang 24412798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 24422798e883SHong Zhang 2443c14dc6b6SHong Zhang /* diagonal sweep */ 2444bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 24452798e883SHong Zhang } 24462798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 24472798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2448c14dc6b6SHong Zhang } else { 2449c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2450c14dc6b6SHong Zhang } 24512798e883SHong Zhang PetscFunctionReturn(0); 24522798e883SHong Zhang } 24532798e883SHong Zhang 2454