173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 1187828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1287828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1387828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1487828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1587828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 16a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1787828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 1887828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 19d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 20c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 21a30f8f8cSSatish Balay 22a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2387828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 24a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 25a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 26a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 27a30f8f8cSSatish Balay into the single precision data structures. 28a30f8f8cSSatish Balay */ 29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay #else 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 41a30f8f8cSSatish Balay #endif 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay EXTERN_C_BEGIN 444a2ae208SSatish Balay #undef __FUNCT__ 454a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 47a30f8f8cSSatish Balay { 48f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 49a30f8f8cSSatish Balay int ierr; 50a30f8f8cSSatish Balay 51a30f8f8cSSatish Balay PetscFunctionBegin; 52a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 54a30f8f8cSSatish Balay PetscFunctionReturn(0); 55a30f8f8cSSatish Balay } 56a30f8f8cSSatish Balay EXTERN_C_END 57a30f8f8cSSatish Balay 58a30f8f8cSSatish Balay EXTERN_C_BEGIN 594a2ae208SSatish Balay #undef __FUNCT__ 604a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 62a30f8f8cSSatish Balay { 63f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 64a30f8f8cSSatish Balay int ierr; 65a30f8f8cSSatish Balay 66a30f8f8cSSatish Balay PetscFunctionBegin; 67a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 69a30f8f8cSSatish Balay PetscFunctionReturn(0); 70a30f8f8cSSatish Balay } 71a30f8f8cSSatish Balay EXTERN_C_END 72a30f8f8cSSatish Balay 73a30f8f8cSSatish Balay /* 74a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 75a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 76a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 77a30f8f8cSSatish Balay length of colmap equals the global matrix length. 78a30f8f8cSSatish Balay */ 794a2ae208SSatish Balay #undef __FUNCT__ 804a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 82a30f8f8cSSatish Balay { 83a30f8f8cSSatish Balay PetscFunctionBegin; 8429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 86a30f8f8cSSatish Balay } 87a30f8f8cSSatish Balay 88a30f8f8cSSatish Balay #define CHUNKSIZE 10 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 91a30f8f8cSSatish Balay { \ 92a30f8f8cSSatish Balay \ 93a30f8f8cSSatish Balay brow = row/bs; \ 94a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 96a30f8f8cSSatish Balay bcol = col/bs; \ 97a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 98a30f8f8cSSatish Balay low = 0; high = nrow; \ 99a30f8f8cSSatish Balay while (high-low > 3) { \ 100a30f8f8cSSatish Balay t = (low+high)/2; \ 101a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 102a30f8f8cSSatish Balay else low = t; \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 105a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 106a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 107a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 108a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 109a30f8f8cSSatish Balay else *bap = value; \ 110a30f8f8cSSatish Balay goto a_noinsert; \ 111a30f8f8cSSatish Balay } \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11429bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 115a30f8f8cSSatish Balay if (nrow >= rmax) { \ 116a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 117a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 118a30f8f8cSSatish Balay MatScalar *new_a; \ 119a30f8f8cSSatish Balay \ 12029bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 121a30f8f8cSSatish Balay \ 122a30f8f8cSSatish Balay /* malloc new storage space */ \ 123a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12482502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 126a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 127a30f8f8cSSatish Balay \ 128a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 129a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 130a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 131a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 132a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13587828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 137a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay /* free up old matrix storage */ \ 139a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 143a30f8f8cSSatish Balay } \ 144a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 145a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 146a30f8f8cSSatish Balay \ 147a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 148a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 149b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 150a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 151a30f8f8cSSatish Balay a->reallocs++; \ 152a30f8f8cSSatish Balay a->s_nz++; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay N = nrow++ - 1; \ 155a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 156a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 157a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 158a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 159a30f8f8cSSatish Balay } \ 160a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 161a30f8f8cSSatish Balay rp[_i] = bcol; \ 162a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 163a30f8f8cSSatish Balay a_noinsert:; \ 164a30f8f8cSSatish Balay ailen[brow] = nrow; \ 165a30f8f8cSSatish Balay } 166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 167a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 168a30f8f8cSSatish Balay { \ 169a30f8f8cSSatish Balay brow = row/bs; \ 170a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 171a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 172a30f8f8cSSatish Balay bcol = col/bs; \ 173a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 174a30f8f8cSSatish Balay low = 0; high = nrow; \ 175a30f8f8cSSatish Balay while (high-low > 3) { \ 176a30f8f8cSSatish Balay t = (low+high)/2; \ 177a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 178a30f8f8cSSatish Balay else low = t; \ 179a30f8f8cSSatish Balay } \ 180a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 181a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 182a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 183a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 184a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 185a30f8f8cSSatish Balay else *bap = value; \ 186a30f8f8cSSatish Balay goto b_noinsert; \ 187a30f8f8cSSatish Balay } \ 188a30f8f8cSSatish Balay } \ 189a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19029bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 191a30f8f8cSSatish Balay if (nrow >= rmax) { \ 192a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 193a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 194a30f8f8cSSatish Balay MatScalar *new_a; \ 195a30f8f8cSSatish Balay \ 19629bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 197a30f8f8cSSatish Balay \ 198a30f8f8cSSatish Balay /* malloc new storage space */ \ 199a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20082502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 202a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 203a30f8f8cSSatish Balay \ 204a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 205a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 206a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 207a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 208a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 213a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay /* free up old matrix storage */ \ 215a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay } \ 220a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 221a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 222a30f8f8cSSatish Balay \ 223a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 224a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 225b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 226a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 227a30f8f8cSSatish Balay b->reallocs++; \ 228a30f8f8cSSatish Balay b->nz++; \ 229a30f8f8cSSatish Balay } \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 232a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 233a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 234a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 235a30f8f8cSSatish Balay } \ 236a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 237a30f8f8cSSatish Balay rp[_i] = bcol; \ 238a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 239a30f8f8cSSatish Balay b_noinsert:; \ 240a30f8f8cSSatish Balay bilen[brow] = nrow; \ 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay #endif 243a30f8f8cSSatish Balay 244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2454a2ae208SSatish Balay #undef __FUNCT__ 2464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 24787828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 248a30f8f8cSSatish Balay { 249a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 250a30f8f8cSSatish Balay int ierr,i,N = m*n; 251a30f8f8cSSatish Balay MatScalar *vsingle; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (N > b->setvalueslen) { 255a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25682502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 257a30f8f8cSSatish Balay b->setvalueslen = N; 258a30f8f8cSSatish Balay } 259a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 260a30f8f8cSSatish Balay 261a30f8f8cSSatish Balay for (i=0; i<N; i++) { 262a30f8f8cSSatish Balay vsingle[i] = v[i]; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 265a30f8f8cSSatish Balay PetscFunctionReturn(0); 266a30f8f8cSSatish Balay } 267a30f8f8cSSatish Balay 2684a2ae208SSatish Balay #undef __FUNCT__ 2694a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 27087828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 271a30f8f8cSSatish Balay { 272a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 273a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 274a30f8f8cSSatish Balay MatScalar *vsingle; 275a30f8f8cSSatish Balay 276a30f8f8cSSatish Balay PetscFunctionBegin; 277a30f8f8cSSatish Balay if (N > b->setvalueslen) { 278a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 27982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 280a30f8f8cSSatish Balay b->setvalueslen = N; 281a30f8f8cSSatish Balay } 282a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 283a30f8f8cSSatish Balay for (i=0; i<N; i++) { 284a30f8f8cSSatish Balay vsingle[i] = v[i]; 285a30f8f8cSSatish Balay } 286a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 287a30f8f8cSSatish Balay PetscFunctionReturn(0); 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 2904a2ae208SSatish Balay #undef __FUNCT__ 2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 29287828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay 3034a2ae208SSatish Balay #undef __FUNCT__ 3044a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 30587828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 306a30f8f8cSSatish Balay { 307a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 308a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 309a30f8f8cSSatish Balay MatScalar *vsingle; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay PetscFunctionBegin; 31229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3134d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay #endif 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 318a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 319a30f8f8cSSatish Balay */ 3204a2ae208SSatish Balay #undef __FUNCT__ 321e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 322a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 323a30f8f8cSSatish Balay { 324a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 325a30f8f8cSSatish Balay MatScalar value; 326b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 327a30f8f8cSSatish Balay int ierr,i,j,row,col; 328b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 329a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 330a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 331a30f8f8cSSatish Balay 332a30f8f8cSSatish Balay /* Some Variables required in the macro */ 333a30f8f8cSSatish Balay Mat A = baij->A; 334a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 335a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 336a30f8f8cSSatish Balay MatScalar *aa=a->a; 337a30f8f8cSSatish Balay 338a30f8f8cSSatish Balay Mat B = baij->B; 339a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 340a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 341a30f8f8cSSatish Balay MatScalar *ba=b->a; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 344a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 345a30f8f8cSSatish Balay MatScalar *ap,*bap; 346a30f8f8cSSatish Balay 347a30f8f8cSSatish Balay /* for stash */ 348f65c83cfSHong Zhang int n_loc, *in_loc=0; 349f65c83cfSHong Zhang MatScalar *v_loc=0; 350a30f8f8cSSatish Balay 351a30f8f8cSSatish Balay PetscFunctionBegin; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay if(!baij->donotstash){ 35482502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35582502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 356a30f8f8cSSatish Balay } 357a30f8f8cSSatish Balay 358a30f8f8cSSatish Balay for (i=0; i<m; i++) { 359a30f8f8cSSatish Balay if (im[i] < 0) continue; 360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 361b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 362a30f8f8cSSatish Balay #endif 363a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 364a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 365a30f8f8cSSatish Balay for (j=0; j<n; j++) { 366f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 367a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 368a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 369a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 370a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 371a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 372a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 373a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 374a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 376b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 377a30f8f8cSSatish Balay #endif 378a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 379a30f8f8cSSatish Balay if (mat->was_assembled) { 380a30f8f8cSSatish Balay if (!baij->colmap) { 381a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 384a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38571730473SSatish Balay col = col - 1; 386a30f8f8cSSatish Balay #else 38771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 388a30f8f8cSSatish Balay #endif 389a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 390a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 391a30f8f8cSSatish Balay col = in[j]; 392a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 393a30f8f8cSSatish Balay B = baij->B; 394a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 395a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 396a30f8f8cSSatish Balay ba=b->a; 39771730473SSatish Balay } else col += in[j]%bs; 398a30f8f8cSSatish Balay } else col = in[j]; 399a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 400a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 401a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay } else { /* off processor entry */ 405a30f8f8cSSatish Balay if (!baij->donotstash) { 406a30f8f8cSSatish Balay n_loc = 0; 407a30f8f8cSSatish Balay for (j=0; j<n; j++){ 408f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 409a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 410a30f8f8cSSatish Balay if (roworiented) { 411a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 412a30f8f8cSSatish Balay } else { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay n_loc++; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay 422a30f8f8cSSatish Balay if(!baij->donotstash){ 423a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 424a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay PetscFunctionReturn(0); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay 4294a2ae208SSatish Balay #undef __FUNCT__ 430e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 431e03e44c9SSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 432a30f8f8cSSatish Balay { 4330880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 4340880e062SHong Zhang MatScalar *value,*barray=baij->barray; 4350880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4360880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4370880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4380880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4390880e062SHong Zhang 440a30f8f8cSSatish Balay PetscFunctionBegin; 4410880e062SHong Zhang if(!barray) { 4420880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4430880e062SHong Zhang baij->barray = barray; 4440880e062SHong Zhang } 4450880e062SHong Zhang 4460880e062SHong Zhang if (roworiented) { 4470880e062SHong Zhang stepval = (n-1)*bs; 4480880e062SHong Zhang } else { 4490880e062SHong Zhang stepval = (m-1)*bs; 4500880e062SHong Zhang } 4510880e062SHong Zhang for (i=0; i<m; i++) { 4520880e062SHong Zhang if (im[i] < 0) continue; 4530880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4540880e062SHong Zhang if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs); 4550880e062SHong Zhang #endif 4560880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4570880e062SHong Zhang row = im[i] - rstart; 4580880e062SHong Zhang for (j=0; j<n; j++) { 4590880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4600880e062SHong Zhang if ((roworiented) && (n == 1)) { 4610880e062SHong Zhang barray = v + i*bs2; 4620880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 4630880e062SHong Zhang barray = v + j*bs2; 4640880e062SHong Zhang } else { /* Here a copy is required */ 4650880e062SHong Zhang if (roworiented) { 4660880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4670880e062SHong Zhang } else { 4680880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4690880e062SHong Zhang } 4700880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4710880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4720880e062SHong Zhang *barray++ = *value++; 4730880e062SHong Zhang } 4740880e062SHong Zhang } 4750880e062SHong Zhang barray -=bs2; 4760880e062SHong Zhang } 4770880e062SHong Zhang 4780880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4790880e062SHong Zhang col = in[j] - cstart; 4800880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4810880e062SHong Zhang } 4820880e062SHong Zhang else if (in[j] < 0) continue; 4830880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4840880e062SHong Zhang else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);} 4850880e062SHong Zhang #endif 4860880e062SHong Zhang else { 4870880e062SHong Zhang if (mat->was_assembled) { 4880880e062SHong Zhang if (!baij->colmap) { 4890880e062SHong Zhang ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 4900880e062SHong Zhang } 4910880e062SHong Zhang 4920880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4930880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4940880e062SHong Zhang { int data; 4950880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4960880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4970880e062SHong Zhang } 4980880e062SHong Zhang #else 4990880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 5000880e062SHong Zhang #endif 5010880e062SHong Zhang #endif 5020880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 5030880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5040880e062SHong Zhang col = (col - 1)/bs; 5050880e062SHong Zhang #else 5060880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5070880e062SHong Zhang #endif 5080880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5090880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5100880e062SHong Zhang col = in[j]; 5110880e062SHong Zhang } 5120880e062SHong Zhang } 5130880e062SHong Zhang else col = in[j]; 5140880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5150880e062SHong Zhang } 5160880e062SHong Zhang } 5170880e062SHong Zhang } else { 5180880e062SHong Zhang if (!baij->donotstash) { 5190880e062SHong Zhang if (roworiented) { 5200880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5210880e062SHong Zhang } else { 5220880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5230880e062SHong Zhang } 5240880e062SHong Zhang } 5250880e062SHong Zhang } 5260880e062SHong Zhang } 5270880e062SHong Zhang PetscFunctionReturn(0); 528a30f8f8cSSatish Balay } 529a30f8f8cSSatish Balay 530a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 531a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 532a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 533a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5344a2ae208SSatish Balay #undef __FUNCT__ 5354a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 536a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 537a30f8f8cSSatish Balay { 538a30f8f8cSSatish Balay PetscFunctionBegin; 53929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 54096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 541a30f8f8cSSatish Balay } 542a30f8f8cSSatish Balay 5434a2ae208SSatish Balay #undef __FUNCT__ 5444a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 545a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 546a30f8f8cSSatish Balay { 547a30f8f8cSSatish Balay PetscFunctionBegin; 54829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 54996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 550a30f8f8cSSatish Balay } 551a30f8f8cSSatish Balay 5524a2ae208SSatish Balay #undef __FUNCT__ 5534a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 55487828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 555a30f8f8cSSatish Balay { 556f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 557a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 558a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay PetscFunctionBegin; 561a30f8f8cSSatish Balay for (i=0; i<m; i++) { 56229bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 563b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 564a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 565a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 566a30f8f8cSSatish Balay for (j=0; j<n; j++) { 56729bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 568b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 569a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 570a30f8f8cSSatish Balay col = idxn[j] - bscstart; 571c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 572a30f8f8cSSatish Balay } else { 573a30f8f8cSSatish Balay if (!baij->colmap) { 574a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 577a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 578a30f8f8cSSatish Balay data --; 579a30f8f8cSSatish Balay #else 580a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 581a30f8f8cSSatish Balay #endif 582a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 583a30f8f8cSSatish Balay else { 584a30f8f8cSSatish Balay col = data + idxn[j]%bs; 585c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 586a30f8f8cSSatish Balay } 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay } else { 59029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 591a30f8f8cSSatish Balay } 592a30f8f8cSSatish Balay } 593a30f8f8cSSatish Balay PetscFunctionReturn(0); 594a30f8f8cSSatish Balay } 595a30f8f8cSSatish Balay 5964a2ae208SSatish Balay #undef __FUNCT__ 5974a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 598a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 599a30f8f8cSSatish Balay { 600a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 601bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 602bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 603a30f8f8cSSatish Balay int ierr; 604a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 605a30f8f8cSSatish Balay 606a30f8f8cSSatish Balay PetscFunctionBegin; 607a30f8f8cSSatish Balay if (baij->size == 1) { 608a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 609a30f8f8cSSatish Balay } else { 610a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 611f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 612a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 613a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 614a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 615a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 616a30f8f8cSSatish Balay /* 61756faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 61856faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 619a30f8f8cSSatish Balay */ 620d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 621a30f8f8cSSatish Balay /* 62256faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 62356faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 624a30f8f8cSSatish Balay 625a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 626a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 627a30f8f8cSSatish Balay } else { 62829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay } 631a30f8f8cSSatish Balay PetscFunctionReturn(0); 632a30f8f8cSSatish Balay } 633a30f8f8cSSatish Balay 634a30f8f8cSSatish Balay /* 635a30f8f8cSSatish Balay Creates the hash table, and sets the table 636a30f8f8cSSatish Balay This table is created only once. 637a30f8f8cSSatish Balay If new entried need to be added to the matrix 638a30f8f8cSSatish Balay then the hash table has to be destroyed and 639a30f8f8cSSatish Balay recreated. 640a30f8f8cSSatish Balay */ 6414a2ae208SSatish Balay #undef __FUNCT__ 6424a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 643a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 644a30f8f8cSSatish Balay { 645a30f8f8cSSatish Balay PetscFunctionBegin; 64629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 64796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 6504a2ae208SSatish Balay #undef __FUNCT__ 6514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 652a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 653a30f8f8cSSatish Balay { 654a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 655a30f8f8cSSatish Balay int ierr,nstash,reallocs; 656a30f8f8cSSatish Balay InsertMode addv; 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay PetscFunctionBegin; 659a30f8f8cSSatish Balay if (baij->donotstash) { 660a30f8f8cSSatish Balay PetscFunctionReturn(0); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay 663a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 664a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 665a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 66629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 671a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 672a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 673b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 674a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 675b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 676a30f8f8cSSatish Balay PetscFunctionReturn(0); 677a30f8f8cSSatish Balay } 678a30f8f8cSSatish Balay 6794a2ae208SSatish Balay #undef __FUNCT__ 6804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 681a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 682a30f8f8cSSatish Balay { 683a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 684a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 685a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 686a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 687a30f8f8cSSatish Balay int *row,*col,other_disassembled; 688a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 689a30f8f8cSSatish Balay MatScalar *val; 690a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 69127f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS) 6925222a1afSHong Zhang PetscTruth flag; 6935222a1afSHong Zhang #endif 694a30f8f8cSSatish Balay 695a30f8f8cSSatish Balay PetscFunctionBegin; 696a30f8f8cSSatish Balay 697a30f8f8cSSatish Balay if (!baij->donotstash) { 698a30f8f8cSSatish Balay while (1) { 699a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 700a30f8f8cSSatish Balay /* 70156faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 70256faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 703a30f8f8cSSatish Balay */ 704a30f8f8cSSatish Balay if (!flg) break; 705a30f8f8cSSatish Balay 706a30f8f8cSSatish Balay for (i=0; i<n;) { 707a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 708a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 709a30f8f8cSSatish Balay if (j < n) ncols = j-i; 710a30f8f8cSSatish Balay else ncols = n-i; 711a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 712a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 713a30f8f8cSSatish Balay i = j; 714a30f8f8cSSatish Balay } 715a30f8f8cSSatish Balay } 716a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 717a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 718a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 719a30f8f8cSSatish Balay restore the original flags */ 720a30f8f8cSSatish Balay r1 = baij->roworiented; 721a30f8f8cSSatish Balay r2 = a->roworiented; 722a30f8f8cSSatish Balay r3 = b->roworiented; 723a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 724a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 725a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 726a30f8f8cSSatish Balay while (1) { 727a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 728a30f8f8cSSatish Balay if (!flg) break; 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay for (i=0; i<n;) { 731a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 732a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 733a30f8f8cSSatish Balay if (j < n) ncols = j-i; 734a30f8f8cSSatish Balay else ncols = n-i; 735a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 736a30f8f8cSSatish Balay i = j; 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay } 739a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 740a30f8f8cSSatish Balay baij->roworiented = r1; 741a30f8f8cSSatish Balay a->roworiented = r2; 742a30f8f8cSSatish Balay b->roworiented = r3; 743a30f8f8cSSatish Balay } 744a30f8f8cSSatish Balay 745a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 746a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 747a30f8f8cSSatish Balay 748a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 749a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 750a30f8f8cSSatish Balay /* 751a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 752a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 753a30f8f8cSSatish Balay */ 754a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 755a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 756a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 757c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 758a30f8f8cSSatish Balay } 759a30f8f8cSSatish Balay } 760a30f8f8cSSatish Balay 761a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 76240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 763a30f8f8cSSatish Balay } 764a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 765a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 766a30f8f8cSSatish Balay 767a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 768a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 769f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 770a30f8f8cSSatish Balay baij->ht_total_ct = 0; 771a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay #endif 774a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 775c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 776a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 777a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay 780a30f8f8cSSatish Balay if (baij->rowvalues) { 781a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 782a30f8f8cSSatish Balay baij->rowvalues = 0; 783a30f8f8cSSatish Balay } 7845222a1afSHong Zhang 7855222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 7862c535e4dSHong Zhang ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr); 7875222a1afSHong Zhang if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); } 7885222a1afSHong Zhang #endif 78927f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS) 79027f1aa60SHong Zhang ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr); 79127f1aa60SHong Zhang if (flag) { ierr = MatUseMUMPS_MPIAIJ(mat);CHKERRQ(ierr); } 79227f1aa60SHong Zhang #endif 793a30f8f8cSSatish Balay PetscFunctionReturn(0); 794a30f8f8cSSatish Balay } 795a30f8f8cSSatish Balay 7964a2ae208SSatish Balay #undef __FUNCT__ 7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 798b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 799a30f8f8cSSatish Balay { 800a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 801fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 802a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 803b0a32e0cSBarry Smith PetscViewer sviewer; 804f3ef73ceSBarry Smith PetscViewerFormat format; 805a30f8f8cSSatish Balay 806a30f8f8cSSatish Balay PetscFunctionBegin; 807b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 808fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 809a30f8f8cSSatish Balay if (isascii) { 810b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 811456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 812a30f8f8cSSatish Balay MatInfo info; 813a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 814a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 815b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 816b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 817a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 818a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 819b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 820a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 821b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 822b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 823a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 824a30f8f8cSSatish Balay PetscFunctionReturn(0); 825fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 826b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 827a30f8f8cSSatish Balay PetscFunctionReturn(0); 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay if (isdraw) { 832b0a32e0cSBarry Smith PetscDraw draw; 833a30f8f8cSSatish Balay PetscTruth isnull; 834b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 835b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 836a30f8f8cSSatish Balay } 837a30f8f8cSSatish Balay 838a30f8f8cSSatish Balay if (size == 1) { 839e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 840a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 841a30f8f8cSSatish Balay } else { 842a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 843a30f8f8cSSatish Balay Mat A; 84465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 84565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 846b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 847a30f8f8cSSatish Balay MatScalar *a; 848a30f8f8cSSatish Balay 849a30f8f8cSSatish Balay if (!rank) { 850bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 851a30f8f8cSSatish Balay } else { 852f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 853a30f8f8cSSatish Balay } 854b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 855a30f8f8cSSatish Balay 856a30f8f8cSSatish Balay /* copy over the A part */ 85765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 858a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 85982502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 860a30f8f8cSSatish Balay 861a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 862a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 863a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 864a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 865a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 866a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 867a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 868a30f8f8cSSatish Balay col++; a += bs; 869a30f8f8cSSatish Balay } 870a30f8f8cSSatish Balay } 871a30f8f8cSSatish Balay } 872a30f8f8cSSatish Balay /* copy over the B part */ 87365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 87465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 875a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 876a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 877a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 878a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 879a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 880a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 881a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 882a30f8f8cSSatish Balay col++; a += bs; 883a30f8f8cSSatish Balay } 884a30f8f8cSSatish Balay } 885a30f8f8cSSatish Balay } 886a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 888a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 889a30f8f8cSSatish Balay /* 890a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 891b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 892a30f8f8cSSatish Balay */ 893b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 89465d70643SHong Zhang if (!rank) { 895e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 896a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 897a30f8f8cSSatish Balay } 898b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 899a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay PetscFunctionReturn(0); 902a30f8f8cSSatish Balay } 903a30f8f8cSSatish Balay 9044a2ae208SSatish Balay #undef __FUNCT__ 9054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 906b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 907a30f8f8cSSatish Balay { 908a30f8f8cSSatish Balay int ierr; 909a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 910a30f8f8cSSatish Balay 911a30f8f8cSSatish Balay PetscFunctionBegin; 912b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 913fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 914b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 915fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 916a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 917a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 918a30f8f8cSSatish Balay } else { 91929bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 920a30f8f8cSSatish Balay } 921a30f8f8cSSatish Balay PetscFunctionReturn(0); 922a30f8f8cSSatish Balay } 923a30f8f8cSSatish Balay 9244a2ae208SSatish Balay #undef __FUNCT__ 9254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 926a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 927a30f8f8cSSatish Balay { 928a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 929a30f8f8cSSatish Balay int ierr; 930a30f8f8cSSatish Balay 931a30f8f8cSSatish Balay PetscFunctionBegin; 932a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 933b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 934a30f8f8cSSatish Balay #endif 935a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 936a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 937a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 938a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 939a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 940a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 941a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 942a30f8f8cSSatish Balay #else 943a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 944a30f8f8cSSatish Balay #endif 945a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 946a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 947a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 94840781036SHong Zhang if (baij->slvec0) { 94940781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 95040781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 95140781036SHong Zhang } 95240781036SHong Zhang if (baij->slvec1) { 95340781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 95440781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 95540781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 95640781036SHong Zhang } 95740781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 958a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 959a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 960a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 961a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 962a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 963a30f8f8cSSatish Balay #endif 964a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 965a30f8f8cSSatish Balay PetscFunctionReturn(0); 966a30f8f8cSSatish Balay } 967a30f8f8cSSatish Balay 9684a2ae208SSatish Balay #undef __FUNCT__ 969a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 970a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 971a9d4b620SHong Zhang { 972a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9734024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 974a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 975a9d4b620SHong Zhang 976a9d4b620SHong Zhang PetscFunctionBegin; 977a9d4b620SHong Zhang /* 97856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," _1comm is called ...\n"); 97956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 980a9d4b620SHong Zhang */ 981a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 982a9d4b620SHong Zhang if (nt != A->n) { 983a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 984a9d4b620SHong Zhang } 985a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 986a9d4b620SHong Zhang if (nt != A->m) { 987a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 988a9d4b620SHong Zhang } 989a9d4b620SHong Zhang 990a9d4b620SHong Zhang /* diagonal part */ 991a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 992a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 993a9d4b620SHong Zhang 994a9d4b620SHong Zhang /* subdiagonal part */ 995a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 996a9d4b620SHong Zhang 997a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 998a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 999a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1000a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1001a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1002a9d4b620SHong Zhang 1003a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1004a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1005a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1006a9d4b620SHong Zhang 1007a9d4b620SHong Zhang /* supperdiagonal part */ 1008a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1009a9d4b620SHong Zhang 1010a9d4b620SHong Zhang PetscFunctionReturn(0); 1011a9d4b620SHong Zhang } 1012a9d4b620SHong Zhang 1013a9d4b620SHong Zhang #undef __FUNCT__ 101440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 101540781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1016a30f8f8cSSatish Balay { 1017a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1018a30f8f8cSSatish Balay int ierr,nt; 1019a30f8f8cSSatish Balay 1020a30f8f8cSSatish Balay PetscFunctionBegin; 1021a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1022b5df2d14SHong Zhang if (nt != A->n) { 102329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1024a30f8f8cSSatish Balay } 1025a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1026b5df2d14SHong Zhang if (nt != A->m) { 102729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1028a30f8f8cSSatish Balay } 102965d70643SHong Zhang 1030b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1031b941877fSHong Zhang /* do diagonal part */ 1032b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1033b941877fSHong Zhang /* do supperdiagonal part */ 1034b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1035b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1036b941877fSHong Zhang /* do subdiagonal part */ 1037b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1038b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1039b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 104065d70643SHong Zhang 1041a30f8f8cSSatish Balay PetscFunctionReturn(0); 1042a30f8f8cSSatish Balay } 1043a30f8f8cSSatish Balay 10444a2ae208SSatish Balay #undef __FUNCT__ 10454a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1046a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1047a30f8f8cSSatish Balay { 1048de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1049a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1050a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1051a9d4b620SHong Zhang 1052a9d4b620SHong Zhang PetscFunctionBegin; 1053a9d4b620SHong Zhang /* 105456faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 105556faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1056a9d4b620SHong Zhang */ 1057a9d4b620SHong Zhang /* diagonal part */ 1058a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1059a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1060a9d4b620SHong Zhang 1061a9d4b620SHong Zhang /* subdiagonal part */ 1062a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1063a9d4b620SHong Zhang 1064a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 1065a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1066a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1067a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1068a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1069a9d4b620SHong Zhang 1070a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1071a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1072a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1073a9d4b620SHong Zhang 1074a9d4b620SHong Zhang /* supperdiagonal part */ 1075a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1076a9d4b620SHong Zhang 1077a9d4b620SHong Zhang PetscFunctionReturn(0); 1078a9d4b620SHong Zhang } 1079a9d4b620SHong Zhang 1080a9d4b620SHong Zhang #undef __FUNCT__ 1081a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1082a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1083a9d4b620SHong Zhang { 1084a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1085aa482183SHong Zhang int ierr; 1086a30f8f8cSSatish Balay 1087a30f8f8cSSatish Balay PetscFunctionBegin; 1088b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1089b941877fSHong Zhang /* do diagonal part */ 1090b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1091b941877fSHong Zhang /* do supperdiagonal part */ 1092b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1093de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1094de8b6608SHong Zhang 1095b941877fSHong Zhang /* do subdiagonal part */ 1096a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1097a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1098a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1099aa482183SHong Zhang 1100a30f8f8cSSatish Balay PetscFunctionReturn(0); 1101a30f8f8cSSatish Balay } 1102a30f8f8cSSatish Balay 11034a2ae208SSatish Balay #undef __FUNCT__ 11044a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1105a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1106a30f8f8cSSatish Balay { 1107a30f8f8cSSatish Balay PetscFunctionBegin; 110829bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 110996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1110a30f8f8cSSatish Balay } 1111a30f8f8cSSatish Balay 11124a2ae208SSatish Balay #undef __FUNCT__ 11134a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1114a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1115a30f8f8cSSatish Balay { 1116a30f8f8cSSatish Balay PetscFunctionBegin; 111729bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 111896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1119a30f8f8cSSatish Balay } 1120a30f8f8cSSatish Balay 1121a30f8f8cSSatish Balay /* 1122a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1123a30f8f8cSSatish Balay diagonal block 1124a30f8f8cSSatish Balay */ 11254a2ae208SSatish Balay #undef __FUNCT__ 11264a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1127a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1128a30f8f8cSSatish Balay { 1129a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1130a30f8f8cSSatish Balay int ierr; 1131a30f8f8cSSatish Balay 1132a30f8f8cSSatish Balay PetscFunctionBegin; 113329bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1134a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1135a30f8f8cSSatish Balay PetscFunctionReturn(0); 1136a30f8f8cSSatish Balay } 1137a30f8f8cSSatish Balay 11384a2ae208SSatish Balay #undef __FUNCT__ 11394a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 114087828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A) 1141a30f8f8cSSatish Balay { 1142a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1143a30f8f8cSSatish Balay int ierr; 1144a30f8f8cSSatish Balay 1145a30f8f8cSSatish Balay PetscFunctionBegin; 1146a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1147a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1148a30f8f8cSSatish Balay PetscFunctionReturn(0); 1149a30f8f8cSSatish Balay } 1150a30f8f8cSSatish Balay 11514a2ae208SSatish Balay #undef __FUNCT__ 11524a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 115387828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1154a30f8f8cSSatish Balay { 1155a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 115687828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1157a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1158a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1159a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1160a30f8f8cSSatish Balay 1161a30f8f8cSSatish Balay PetscFunctionBegin; 116229bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1163a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1164a30f8f8cSSatish Balay 1165a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1166a30f8f8cSSatish Balay /* 1167a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1168a30f8f8cSSatish Balay */ 1169a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1170a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1171a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1172a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1173a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1174a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1175a30f8f8cSSatish Balay } 117687828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1178a30f8f8cSSatish Balay } 1179a30f8f8cSSatish Balay 118029bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1181a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1182a30f8f8cSSatish Balay 1183a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1184a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1185a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1186a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1187a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1188a30f8f8cSSatish Balay nztot = nzA + nzB; 1189a30f8f8cSSatish Balay 1190a30f8f8cSSatish Balay cmap = mat->garray; 1191a30f8f8cSSatish Balay if (v || idx) { 1192a30f8f8cSSatish Balay if (nztot) { 1193a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1194a30f8f8cSSatish Balay int imark = -1; 1195a30f8f8cSSatish Balay if (v) { 1196a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1197a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1198a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1199a30f8f8cSSatish Balay else break; 1200a30f8f8cSSatish Balay } 1201a30f8f8cSSatish Balay imark = i; 1202a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1203a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1204a30f8f8cSSatish Balay } 1205a30f8f8cSSatish Balay if (idx) { 1206a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1207a30f8f8cSSatish Balay if (imark > -1) { 1208a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1209a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1210a30f8f8cSSatish Balay } 1211a30f8f8cSSatish Balay } else { 1212a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1213a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1214a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1215a30f8f8cSSatish Balay else break; 1216a30f8f8cSSatish Balay } 1217a30f8f8cSSatish Balay imark = i; 1218a30f8f8cSSatish Balay } 1219a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1220a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1221a30f8f8cSSatish Balay } 1222a30f8f8cSSatish Balay } else { 1223a30f8f8cSSatish Balay if (idx) *idx = 0; 1224a30f8f8cSSatish Balay if (v) *v = 0; 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay *nz = nztot; 1228a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1229a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1230a30f8f8cSSatish Balay PetscFunctionReturn(0); 1231a30f8f8cSSatish Balay } 1232a30f8f8cSSatish Balay 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 123587828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1236a30f8f8cSSatish Balay { 1237a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1238a30f8f8cSSatish Balay 1239a30f8f8cSSatish Balay PetscFunctionBegin; 1240a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 124129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1242a30f8f8cSSatish Balay } 1243a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1244a30f8f8cSSatish Balay PetscFunctionReturn(0); 1245a30f8f8cSSatish Balay } 1246a30f8f8cSSatish Balay 12474a2ae208SSatish Balay #undef __FUNCT__ 12484a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1249a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1250a30f8f8cSSatish Balay { 1251a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1252a30f8f8cSSatish Balay 1253a30f8f8cSSatish Balay PetscFunctionBegin; 1254a30f8f8cSSatish Balay *bs = baij->bs; 1255a30f8f8cSSatish Balay PetscFunctionReturn(0); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay 12584a2ae208SSatish Balay #undef __FUNCT__ 12594a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1260a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1261a30f8f8cSSatish Balay { 1262a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1263a30f8f8cSSatish Balay int ierr; 1264a30f8f8cSSatish Balay 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1267a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1268a30f8f8cSSatish Balay PetscFunctionReturn(0); 1269a30f8f8cSSatish Balay } 1270a30f8f8cSSatish Balay 12714a2ae208SSatish Balay #undef __FUNCT__ 12724a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1273a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1274a30f8f8cSSatish Balay { 1275a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1276a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1277a30f8f8cSSatish Balay int ierr; 1278a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1279a30f8f8cSSatish Balay 1280a30f8f8cSSatish Balay PetscFunctionBegin; 1281f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1282a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1283a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1284a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1285a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1286a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1287a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1288a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1289a30f8f8cSSatish Balay info->nz_used = isend[0]; 1290a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1291a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1292a30f8f8cSSatish Balay info->memory = isend[3]; 1293a30f8f8cSSatish Balay info->mallocs = isend[4]; 1294a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1295d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1296a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1297a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1298a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1299a30f8f8cSSatish Balay info->memory = irecv[3]; 1300a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1301a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1302d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1304a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1305a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1306a30f8f8cSSatish Balay info->memory = irecv[3]; 1307a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1308a30f8f8cSSatish Balay } else { 130929bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1310a30f8f8cSSatish Balay } 1311f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1312f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1313f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1314f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1315a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1316a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1317a30f8f8cSSatish Balay info->factor_mallocs = 0; 1318a30f8f8cSSatish Balay PetscFunctionReturn(0); 1319a30f8f8cSSatish Balay } 1320a30f8f8cSSatish Balay 13214a2ae208SSatish Balay #undef __FUNCT__ 13224a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1323a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1324a30f8f8cSSatish Balay { 1325a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1326a30f8f8cSSatish Balay int ierr; 1327a30f8f8cSSatish Balay 1328a30f8f8cSSatish Balay PetscFunctionBegin; 1329e98b92d7SKris Buschelman switch (op) { 1330e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1331e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1332e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1333e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1334e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1335e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1336e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1337a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1339e98b92d7SKris Buschelman break; 1340e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1341a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1342a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1343a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1344e98b92d7SKris Buschelman break; 1345e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1346e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1347e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1348b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1349e98b92d7SKris Buschelman break; 1350e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1351a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1352a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1353a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1354e98b92d7SKris Buschelman break; 1355e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1356a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1357e98b92d7SKris Buschelman break; 1358e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 135929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1360e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1361a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1362e98b92d7SKris Buschelman break; 1363e98b92d7SKris Buschelman default: 136429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1365a30f8f8cSSatish Balay } 1366a30f8f8cSSatish Balay PetscFunctionReturn(0); 1367a30f8f8cSSatish Balay } 1368a30f8f8cSSatish Balay 13694a2ae208SSatish Balay #undef __FUNCT__ 13708115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13718115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1372a30f8f8cSSatish Balay { 13738115998fSBarry Smith int ierr; 1374a30f8f8cSSatish Balay PetscFunctionBegin; 1375999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13768115998fSBarry Smith PetscFunctionReturn(0); 1377a30f8f8cSSatish Balay } 1378a30f8f8cSSatish Balay 13794a2ae208SSatish Balay #undef __FUNCT__ 13804a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1381a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1382a30f8f8cSSatish Balay { 1383a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1384a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1385a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1386a30f8f8cSSatish Balay 1387a30f8f8cSSatish Balay PetscFunctionBegin; 1388a30f8f8cSSatish Balay if (ll != rr) { 138929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1390a30f8f8cSSatish Balay } 1391a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1392a30f8f8cSSatish Balay if (rr) { 1393a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 139429bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1395a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1396a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1397a30f8f8cSSatish Balay /*} if (ll) { */ 1398a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 139929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1400a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1401a30f8f8cSSatish Balay /* } */ 1402a30f8f8cSSatish Balay /* scale the diagonal block */ 1403a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1404a30f8f8cSSatish Balay 1405a30f8f8cSSatish Balay /* if (rr) { */ 1406a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1407a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1408a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1409a30f8f8cSSatish Balay } 1410a30f8f8cSSatish Balay 1411a30f8f8cSSatish Balay PetscFunctionReturn(0); 1412a30f8f8cSSatish Balay } 1413a30f8f8cSSatish Balay 14144a2ae208SSatish Balay #undef __FUNCT__ 14154a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 141687828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag) 1417a30f8f8cSSatish Balay { 1418a30f8f8cSSatish Balay PetscFunctionBegin; 1419c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1420a30f8f8cSSatish Balay } 1421a30f8f8cSSatish Balay 14224a2ae208SSatish Balay #undef __FUNCT__ 14234a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1424a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1425a30f8f8cSSatish Balay { 1426a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1427a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1428a30f8f8cSSatish Balay static int called = 0; 1429a30f8f8cSSatish Balay int ierr; 1430a30f8f8cSSatish Balay 1431a30f8f8cSSatish Balay PetscFunctionBegin; 1432a30f8f8cSSatish Balay if (!a->rank) { 1433a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1434a30f8f8cSSatish Balay } 1435a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1436a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1437a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1438a30f8f8cSSatish Balay PetscFunctionReturn(0); 1439a30f8f8cSSatish Balay } 1440a30f8f8cSSatish Balay 14414a2ae208SSatish Balay #undef __FUNCT__ 14424a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1443a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1444a30f8f8cSSatish Balay { 1445f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1446a30f8f8cSSatish Balay int ierr; 1447a30f8f8cSSatish Balay 1448a30f8f8cSSatish Balay PetscFunctionBegin; 1449a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1450a30f8f8cSSatish Balay PetscFunctionReturn(0); 1451a30f8f8cSSatish Balay } 1452a30f8f8cSSatish Balay 1453a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1454a30f8f8cSSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1457a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1458a30f8f8cSSatish Balay { 1459a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1460a30f8f8cSSatish Balay Mat a,b,c,d; 1461a30f8f8cSSatish Balay PetscTruth flg; 1462a30f8f8cSSatish Balay int ierr; 1463a30f8f8cSSatish Balay 1464a30f8f8cSSatish Balay PetscFunctionBegin; 1465b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1466b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1467a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1468a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1469a30f8f8cSSatish Balay 1470a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1471a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1472a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1473a30f8f8cSSatish Balay } 1474a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1475a30f8f8cSSatish Balay PetscFunctionReturn(0); 1476a30f8f8cSSatish Balay } 1477a30f8f8cSSatish Balay 14784a2ae208SSatish Balay #undef __FUNCT__ 14794a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1480273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1481273d9f13SBarry Smith { 1482273d9f13SBarry Smith int ierr; 1483273d9f13SBarry Smith 1484273d9f13SBarry Smith PetscFunctionBegin; 1485273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1486273d9f13SBarry Smith PetscFunctionReturn(0); 1487273d9f13SBarry Smith } 1488a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1489a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1490a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1491a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1492a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1493a9d4b620SHong Zhang MatMult_MPISBAIJ, 1494a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1495a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1496a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay 0, 15032798e883SHong Zhang MatRelax_MPISBAIJ, 1504a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1505a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1506a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1507a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1508a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1509a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1510a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1511a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1514a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1515a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 1518a30f8f8cSSatish Balay 0, 1519a30f8f8cSSatish Balay 0, 1520273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1521b5df2d14SHong Zhang 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 15310b15b8e2SSatish Balay 0, 15320b15b8e2SSatish Balay 0, 1533a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1536a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1537a30f8f8cSSatish Balay 0, 1538a30f8f8cSSatish Balay 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1548a30f8f8cSSatish Balay 0, 1549a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 15538a124369SBarry Smith MatGetPetscMaps_Petsc, 155424d5174aSHong Zhang 0, 155524d5174aSHong Zhang 0, 155624d5174aSHong Zhang 0, 155724d5174aSHong Zhang 0, 155824d5174aSHong Zhang 0, 155924d5174aSHong Zhang 0, 156024d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1561a30f8f8cSSatish Balay 1562a30f8f8cSSatish Balay 1563a30f8f8cSSatish Balay EXTERN_C_BEGIN 15644a2ae208SSatish Balay #undef __FUNCT__ 15654a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1566a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1567a30f8f8cSSatish Balay { 1568a30f8f8cSSatish Balay PetscFunctionBegin; 1569a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1570a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1571a30f8f8cSSatish Balay PetscFunctionReturn(0); 1572a30f8f8cSSatish Balay } 1573a30f8f8cSSatish Balay EXTERN_C_END 1574a30f8f8cSSatish Balay 1575273d9f13SBarry Smith EXTERN_C_BEGIN 15764a2ae208SSatish Balay #undef __FUNCT__ 1577*a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1578*a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1579*a23d5eceSKris Buschelman { 1580*a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1581*a23d5eceSKris Buschelman int ierr,i,mbs,Mbs; 1582*a23d5eceSKris Buschelman PetscTruth flg2; 1583*a23d5eceSKris Buschelman 1584*a23d5eceSKris Buschelman PetscFunctionBegin; 1585*a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1586*a23d5eceSKris Buschelman 1587*a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1588*a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1589*a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1590*a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1591*a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1592*a23d5eceSKris Buschelman if (d_nnz) { 1593*a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1594*a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1595*a23d5eceSKris Buschelman } 1596*a23d5eceSKris Buschelman } 1597*a23d5eceSKris Buschelman if (o_nnz) { 1598*a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1599*a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1600*a23d5eceSKris Buschelman } 1601*a23d5eceSKris Buschelman } 1602*a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1603*a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1604*a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1605*a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1606*a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1607*a23d5eceSKris Buschelman 1608*a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1609*a23d5eceSKris Buschelman mbs = B->m/bs; 1610*a23d5eceSKris Buschelman Mbs = B->M/bs; 1611*a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1612*a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1613*a23d5eceSKris Buschelman } 1614*a23d5eceSKris Buschelman 1615*a23d5eceSKris Buschelman b->bs = bs; 1616*a23d5eceSKris Buschelman b->bs2 = bs*bs; 1617*a23d5eceSKris Buschelman b->mbs = mbs; 1618*a23d5eceSKris Buschelman b->nbs = mbs; 1619*a23d5eceSKris Buschelman b->Mbs = Mbs; 1620*a23d5eceSKris Buschelman b->Nbs = Mbs; 1621*a23d5eceSKris Buschelman 1622*a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1623*a23d5eceSKris Buschelman b->rowners[0] = 0; 1624*a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1625*a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1626*a23d5eceSKris Buschelman } 1627*a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1628*a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1629*a23d5eceSKris Buschelman b->cstart = b->rstart; 1630*a23d5eceSKris Buschelman b->cend = b->rend; 1631*a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1632*a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1633*a23d5eceSKris Buschelman } 1634*a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1635*a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1636*a23d5eceSKris Buschelman 1637*a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1638*a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1639*a23d5eceSKris Buschelman 1640*a23d5eceSKris Buschelman 1641*a23d5eceSKris Buschelman ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1642*a23d5eceSKris Buschelman PetscLogObjectParent(B,b->A); 1643*a23d5eceSKris Buschelman ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1644*a23d5eceSKris Buschelman PetscLogObjectParent(B,b->B); 1645*a23d5eceSKris Buschelman 1646*a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1647*a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1648*a23d5eceSKris Buschelman 1649*a23d5eceSKris Buschelman PetscFunctionReturn(0); 1650*a23d5eceSKris Buschelman } 1651*a23d5eceSKris Buschelman EXTERN_C_END 1652*a23d5eceSKris Buschelman 1653*a23d5eceSKris Buschelman EXTERN_C_BEGIN 1654*a23d5eceSKris Buschelman #undef __FUNCT__ 16554a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1656b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1657b5df2d14SHong Zhang { 1658b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1659ca54ac64SHong Zhang int ierr; 1660b5df2d14SHong Zhang PetscTruth flg; 1661b5df2d14SHong Zhang 1662b5df2d14SHong Zhang PetscFunctionBegin; 1663b5df2d14SHong Zhang 1664b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1665b0a32e0cSBarry Smith B->data = (void*)b; 1666b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1667b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1668b5df2d14SHong Zhang 1669b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1670b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1671b5df2d14SHong Zhang B->mapping = 0; 1672b5df2d14SHong Zhang B->factor = 0; 1673b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1674b5df2d14SHong Zhang 1675b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1676b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1677b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1678b5df2d14SHong Zhang 1679b5df2d14SHong Zhang /* build local table of row and column ownerships */ 168082502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1681273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1682273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1683b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1684b5df2d14SHong Zhang 1685b5df2d14SHong Zhang /* build cache for off array entries formed */ 1686b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1687b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1688b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1689b5df2d14SHong Zhang b->garray = PETSC_NULL; 1690b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1691b5df2d14SHong Zhang 1692f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1693b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 169464a35ccbSBarry Smith b->setvalueslen = 0; 1695b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1696b5df2d14SHong Zhang #endif 1697b5df2d14SHong Zhang 1698b5df2d14SHong Zhang /* stuff used in block assembly */ 1699b5df2d14SHong Zhang b->barray = 0; 1700b5df2d14SHong Zhang 1701b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1702b5df2d14SHong Zhang b->lvec = 0; 1703b5df2d14SHong Zhang b->Mvctx = 0; 170440781036SHong Zhang b->slvec0 = 0; 170540781036SHong Zhang b->slvec0b = 0; 170640781036SHong Zhang b->slvec1 = 0; 170740781036SHong Zhang b->slvec1a = 0; 170840781036SHong Zhang b->slvec1b = 0; 170940781036SHong Zhang b->sMvctx = 0; 1710b5df2d14SHong Zhang 1711b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1712b5df2d14SHong Zhang b->rowindices = 0; 1713b5df2d14SHong Zhang b->rowvalues = 0; 1714b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1715b5df2d14SHong Zhang 1716b5df2d14SHong Zhang /* hash table stuff */ 1717b5df2d14SHong Zhang b->ht = 0; 1718b5df2d14SHong Zhang b->hd = 0; 1719b5df2d14SHong Zhang b->ht_size = 0; 1720b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1721b5df2d14SHong Zhang b->ht_fact = 0; 1722b5df2d14SHong Zhang b->ht_total_ct = 0; 1723b5df2d14SHong Zhang b->ht_insert_ct = 0; 1724b5df2d14SHong Zhang 1725e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1726b5df2d14SHong Zhang if (flg) { 1727f6275e2eSBarry Smith PetscReal fact = 1.39; 1728b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1729e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1730b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1731b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1732b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1733b5df2d14SHong Zhang } 1734b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1735b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1736b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1737b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1738b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1739b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1740b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1741b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1742b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1743*a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1744*a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1745*a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1746b5df2d14SHong Zhang PetscFunctionReturn(0); 1747b5df2d14SHong Zhang } 1748273d9f13SBarry Smith EXTERN_C_END 1749b5df2d14SHong Zhang 17504a2ae208SSatish Balay #undef __FUNCT__ 17514a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1752b5df2d14SHong Zhang /*@C 1753b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1754b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1755b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1756b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1757b5df2d14SHong Zhang 1758b5df2d14SHong Zhang Collective on Mat 1759b5df2d14SHong Zhang 1760b5df2d14SHong Zhang Input Parameters: 1761b5df2d14SHong Zhang + A - the matrix 1762b5df2d14SHong Zhang . bs - size of blockk 1763b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1764b5df2d14SHong Zhang submatrix (same for all local rows) 1765b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 17666d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 17676d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 17686d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1769b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1770b5df2d14SHong Zhang submatrix (same for all local rows). 1771b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1772b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1773b5df2d14SHong Zhang each block row) or PETSC_NULL. 1774b5df2d14SHong Zhang 1775b5df2d14SHong Zhang 1776b5df2d14SHong Zhang Options Database Keys: 1777b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1778b5df2d14SHong Zhang block calculations (much slower) 1779b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1780b5df2d14SHong Zhang 1781b5df2d14SHong Zhang Notes: 1782b5df2d14SHong Zhang 1783b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1784b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1785b5df2d14SHong Zhang 1786b5df2d14SHong Zhang Storage Information: 1787b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1788b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1789b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1790b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1791b5df2d14SHong Zhang 1792b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1793b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1794b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1795b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1796b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1797b5df2d14SHong Zhang 1798b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1799b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1800b5df2d14SHong Zhang 1801b5df2d14SHong Zhang .vb 1802b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1803b5df2d14SHong Zhang ------------------- 1804b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1805b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1806b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1807b5df2d14SHong Zhang ------------------- 1808b5df2d14SHong Zhang .ve 1809b5df2d14SHong Zhang 1810b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1811b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18126d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18136d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1814b5df2d14SHong Zhang 18156d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18166d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1817b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1818b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1819b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1820b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1821b5df2d14SHong Zhang matrices. 1822b5df2d14SHong Zhang 1823b5df2d14SHong Zhang Level: intermediate 1824b5df2d14SHong Zhang 1825b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1826b5df2d14SHong Zhang 1827b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1828b5df2d14SHong Zhang @*/ 1829b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1830b5df2d14SHong Zhang { 1831*a23d5eceSKris Buschelman int ierr,(*f)(Mat,int,int,int*,int,int*); 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang PetscFunctionBegin; 1834*a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1835*a23d5eceSKris Buschelman if (f) { 1836*a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1837b5df2d14SHong Zhang } 1838b5df2d14SHong Zhang PetscFunctionReturn(0); 1839b5df2d14SHong Zhang } 1840b5df2d14SHong Zhang 18414a2ae208SSatish Balay #undef __FUNCT__ 18424a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1843a30f8f8cSSatish Balay /*@C 1844a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1845a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1846a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1847a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1848a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1849a30f8f8cSSatish Balay 1850a30f8f8cSSatish Balay Collective on MPI_Comm 1851a30f8f8cSSatish Balay 1852a30f8f8cSSatish Balay Input Parameters: 1853a30f8f8cSSatish Balay + comm - MPI communicator 1854a30f8f8cSSatish Balay . bs - size of blockk 1855a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1856a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1857a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1858a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1859a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1860a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1861a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1862a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1863a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1864a30f8f8cSSatish Balay submatrix (same for all local rows) 1865a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 18666d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 18676d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 18686d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1869a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1870a30f8f8cSSatish Balay submatrix (same for all local rows). 1871a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1872a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1873a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1874a30f8f8cSSatish Balay 1875a30f8f8cSSatish Balay Output Parameter: 1876a30f8f8cSSatish Balay . A - the matrix 1877a30f8f8cSSatish Balay 1878a30f8f8cSSatish Balay Options Database Keys: 1879a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1880a30f8f8cSSatish Balay block calculations (much slower) 1881a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1882a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1883a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1884a30f8f8cSSatish Balay 1885a30f8f8cSSatish Balay Notes: 1886a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1887a30f8f8cSSatish Balay (possibly both). 1888a30f8f8cSSatish Balay 1889a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1890a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1891a30f8f8cSSatish Balay 1892a30f8f8cSSatish Balay Storage Information: 1893a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1894a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1895a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1896a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1897a30f8f8cSSatish Balay 1898a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1899a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1900a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1901a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1902a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1903a30f8f8cSSatish Balay 1904a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1905a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1906a30f8f8cSSatish Balay 1907a30f8f8cSSatish Balay .vb 1908a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1909a30f8f8cSSatish Balay ------------------- 1910a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1911a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1912a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1913a30f8f8cSSatish Balay ------------------- 1914a30f8f8cSSatish Balay .ve 1915a30f8f8cSSatish Balay 1916a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1917a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19186d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19196d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1920a30f8f8cSSatish Balay 19216d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19226d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1923a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1924a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1925a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1926a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1927a30f8f8cSSatish Balay matrices. 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay Level: intermediate 1930a30f8f8cSSatish Balay 1931a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1932a30f8f8cSSatish Balay 1933a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1934a30f8f8cSSatish Balay @*/ 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1937a30f8f8cSSatish Balay { 1938273d9f13SBarry Smith int ierr,size; 1939a30f8f8cSSatish Balay 1940a30f8f8cSSatish Balay PetscFunctionBegin; 1941b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1942273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1943273d9f13SBarry Smith if (size > 1) { 1944b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1945b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1946273d9f13SBarry Smith } else { 1947273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1948273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1949273d9f13SBarry Smith } 1950a30f8f8cSSatish Balay PetscFunctionReturn(0); 1951a30f8f8cSSatish Balay } 1952a30f8f8cSSatish Balay 1953a30f8f8cSSatish Balay 19544a2ae208SSatish Balay #undef __FUNCT__ 19554a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 1956a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1957a30f8f8cSSatish Balay { 1958a30f8f8cSSatish Balay Mat mat; 1959a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1960a30f8f8cSSatish Balay int ierr,len=0; 1961a30f8f8cSSatish Balay 1962a30f8f8cSSatish Balay PetscFunctionBegin; 1963a30f8f8cSSatish Balay *newmat = 0; 1964b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1965b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1966273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1967b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1968a30f8f8cSSatish Balay a->bs = oldmat->bs; 1969a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1970a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1971a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1972a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1973a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1974a30f8f8cSSatish Balay 1975a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1976a30f8f8cSSatish Balay a->rend = oldmat->rend; 1977a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1978a30f8f8cSSatish Balay a->cend = oldmat->cend; 1979a30f8f8cSSatish Balay a->size = oldmat->size; 1980a30f8f8cSSatish Balay a->rank = oldmat->rank; 1981a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1982a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1983a30f8f8cSSatish Balay a->rowindices = 0; 1984a30f8f8cSSatish Balay a->rowvalues = 0; 1985a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1986a30f8f8cSSatish Balay a->barray = 0; 1987a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1988a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1989a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1990a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1991a30f8f8cSSatish Balay 1992a30f8f8cSSatish Balay /* hash table stuff */ 1993a30f8f8cSSatish Balay a->ht = 0; 1994a30f8f8cSSatish Balay a->hd = 0; 1995a30f8f8cSSatish Balay a->ht_size = 0; 1996a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1997a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1998a30f8f8cSSatish Balay a->ht_total_ct = 0; 1999a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2000a30f8f8cSSatish Balay 200182502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 2002b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 2003a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 2004a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 2005a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2006a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2007a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2008a30f8f8cSSatish Balay if (oldmat->colmap) { 2009a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2010a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2011a30f8f8cSSatish Balay #else 201282502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2013b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2014a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2015a30f8f8cSSatish Balay #endif 2016a30f8f8cSSatish Balay } else a->colmap = 0; 2017a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 201882502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2019b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2020a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2021a30f8f8cSSatish Balay } else a->garray = 0; 2022a30f8f8cSSatish Balay 2023a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2024b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2025a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2026a30f8f8cSSatish Balay 2027b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2028a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2029b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2030a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2031b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2032b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2033a30f8f8cSSatish Balay *newmat = mat; 2034a30f8f8cSSatish Balay PetscFunctionReturn(0); 2035a30f8f8cSSatish Balay } 2036a30f8f8cSSatish Balay 2037a30f8f8cSSatish Balay #include "petscsys.h" 2038a30f8f8cSSatish Balay 2039273d9f13SBarry Smith EXTERN_C_BEGIN 20404a2ae208SSatish Balay #undef __FUNCT__ 20414a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2042b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 2043a30f8f8cSSatish Balay { 2044a30f8f8cSSatish Balay Mat A; 2045a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 204687828ca2SBarry Smith PetscScalar *vals,*buf; 2047a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2048a30f8f8cSSatish Balay MPI_Status status; 2049a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2050a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2051a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2052a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2053a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 205427f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS) 205527fa2452SHong Zhang PetscTruth flag; 205627fa2452SHong Zhang #endif 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay PetscFunctionBegin; 2059b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2060a30f8f8cSSatish Balay 2061a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2062a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2063a30f8f8cSSatish Balay if (!rank) { 2064b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2065a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2066552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2067a30f8f8cSSatish Balay if (header[3] < 0) { 206829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2069a30f8f8cSSatish Balay } 2070a30f8f8cSSatish Balay } 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2074a30f8f8cSSatish Balay 207529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2076a30f8f8cSSatish Balay 2077a30f8f8cSSatish Balay /* 2078a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2079a30f8f8cSSatish Balay divisible by the blocksize 2080a30f8f8cSSatish Balay */ 2081a30f8f8cSSatish Balay Mbs = M/bs; 2082a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2083a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2084a30f8f8cSSatish Balay else Mbs++; 2085a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2086b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2087a30f8f8cSSatish Balay } 2088a30f8f8cSSatish Balay 2089a30f8f8cSSatish Balay /* determine ownership of all rows */ 2090a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2091a30f8f8cSSatish Balay m = mbs*bs; 2092b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2093a30f8f8cSSatish Balay browners = rowners + size + 1; 2094a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2095a30f8f8cSSatish Balay rowners[0] = 0; 2096a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2097a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2098a30f8f8cSSatish Balay rstart = rowners[rank]; 2099a30f8f8cSSatish Balay rend = rowners[rank+1]; 2100a30f8f8cSSatish Balay 2101a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 210282502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay if (!rank) { 2104b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2105a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 210782502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2108a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2109a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2110a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay } else { 2112a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2113a30f8f8cSSatish Balay } 2114a30f8f8cSSatish Balay 21150222edb1SHong Zhang if (!rank) { /* procs[0] */ 2116a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 211782502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2118a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2119a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2120a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2121a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2122a30f8f8cSSatish Balay } 2123a30f8f8cSSatish Balay } 2124a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2125a30f8f8cSSatish Balay 2126a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2127a30f8f8cSSatish Balay maxnz = 0; 2128a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2129a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2130a30f8f8cSSatish Balay } 213182502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2132a30f8f8cSSatish Balay 2133a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2134a30f8f8cSSatish Balay nz = procsnz[0]; 213582502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2136a30f8f8cSSatish Balay mycols = ibuf; 2137a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2138a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2139a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2140a30f8f8cSSatish Balay 2141a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2142a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2143a30f8f8cSSatish Balay nz = procsnz[i]; 2144a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2145a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay } 2147a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2148a30f8f8cSSatish Balay if (size != 1) { 2149a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2150a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2152a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay } 2154a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21550222edb1SHong Zhang } else { /* procs[i], i>0 */ 2156a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2157a30f8f8cSSatish Balay nz = 0; 2158a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2159a30f8f8cSSatish Balay nz += locrowlens[i]; 2160a30f8f8cSSatish Balay } 216182502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay mycols = ibuf; 2163a30f8f8cSSatish Balay /* receive message of column indices*/ 2164a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2165a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 216629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2167a30f8f8cSSatish Balay } 2168a30f8f8cSSatish Balay 2169a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 217082502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2171a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 217282502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2173a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2174a30f8f8cSSatish Balay masked1 = mask + Mbs; 2175a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2176a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2177a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2178a30f8f8cSSatish Balay dcount = 0; 2179a30f8f8cSSatish Balay odcount = 0; 2180a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2181a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2182a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21830222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2184a30f8f8cSSatish Balay if (!mask[tmp]) { 2185a30f8f8cSSatish Balay mask[tmp] = 1; 21860222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21870222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2188a30f8f8cSSatish Balay } 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay rowcount++; 2191a30f8f8cSSatish Balay } 2192a30f8f8cSSatish Balay 21930222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21940222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2195a30f8f8cSSatish Balay 2196a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2197a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2198a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2199a30f8f8cSSatish Balay } 2200a30f8f8cSSatish Balay 2201a30f8f8cSSatish Balay /* create our matrix */ 22027e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2203bfe19f1aSHong Zhang CHKERRQ(ierr); 2204a30f8f8cSSatish Balay A = *newmat; 2205273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2206a30f8f8cSSatish Balay 2207a30f8f8cSSatish Balay if (!rank) { 220887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2209a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2210a30f8f8cSSatish Balay nz = procsnz[0]; 2211a30f8f8cSSatish Balay vals = buf; 2212a30f8f8cSSatish Balay mycols = ibuf; 2213a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2214a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay /* insert into matrix */ 2218a30f8f8cSSatish Balay jj = rstart*bs; 2219a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22207e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2221a30f8f8cSSatish Balay mycols += locrowlens[i]; 2222a30f8f8cSSatish Balay vals += locrowlens[i]; 2223a30f8f8cSSatish Balay jj++; 2224a30f8f8cSSatish Balay } 22257e06b45fSHong Zhang 2226a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2227a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2228a30f8f8cSSatish Balay nz = procsnz[i]; 2229a30f8f8cSSatish Balay vals = buf; 2230a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2231a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay } 2233a30f8f8cSSatish Balay /* the last proc */ 2234a30f8f8cSSatish Balay if (size != 1){ 2235a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2236a30f8f8cSSatish Balay vals = buf; 2237a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2238a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2239a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2240a30f8f8cSSatish Balay } 2241a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22427e06b45fSHong Zhang 2243a30f8f8cSSatish Balay } else { 2244a30f8f8cSSatish Balay /* receive numeric values */ 224587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2246a30f8f8cSSatish Balay 2247a30f8f8cSSatish Balay /* receive message of values*/ 2248a30f8f8cSSatish Balay vals = buf; 2249a30f8f8cSSatish Balay mycols = ibuf; 2250a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 225229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2253a30f8f8cSSatish Balay 2254a30f8f8cSSatish Balay /* insert into matrix */ 2255a30f8f8cSSatish Balay jj = rstart*bs; 2256a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2257a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay mycols += locrowlens[i]; 2259a30f8f8cSSatish Balay vals += locrowlens[i]; 2260a30f8f8cSSatish Balay jj++; 2261a30f8f8cSSatish Balay } 2262a30f8f8cSSatish Balay } 22637e06b45fSHong Zhang 2264a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2266a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2267a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2268a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2269a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2271a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 227227fa2452SHong Zhang #if defined(PETSC_HAVE_SPOOLES) 227327fa2452SHong Zhang ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr); 22740f39d4ecSHong Zhang if (flag) { 22750f39d4ecSHong Zhang if (size == 1) { 22760f39d4ecSHong Zhang ierr = MatUseSpooles_SeqAIJ(A);CHKERRQ(ierr); 22770f39d4ecSHong Zhang } else { 22780f39d4ecSHong Zhang ierr = MatUseSpooles_MPISBAIJ(A);CHKERRQ(ierr); 22790f39d4ecSHong Zhang } 22800f39d4ecSHong Zhang } 228127fa2452SHong Zhang #endif 228227f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS) 228327f1aa60SHong Zhang ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr); 228427f1aa60SHong Zhang if (flag) { 228527f1aa60SHong Zhang ierr = MatUseMUMPS_MPIAIJ(A);CHKERRQ(ierr); 228627f1aa60SHong Zhang } 228727f1aa60SHong Zhang #endif 2288a30f8f8cSSatish Balay PetscFunctionReturn(0); 2289a30f8f8cSSatish Balay } 2290273d9f13SBarry Smith EXTERN_C_END 2291a30f8f8cSSatish Balay 22924a2ae208SSatish Balay #undef __FUNCT__ 22934a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2294a30f8f8cSSatish Balay /*@ 2295a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2296a30f8f8cSSatish Balay 2297a30f8f8cSSatish Balay Input Parameters: 2298a30f8f8cSSatish Balay . mat - the matrix 2299a30f8f8cSSatish Balay . fact - factor 2300a30f8f8cSSatish Balay 2301a30f8f8cSSatish Balay Collective on Mat 2302a30f8f8cSSatish Balay 2303a30f8f8cSSatish Balay Level: advanced 2304a30f8f8cSSatish Balay 2305a30f8f8cSSatish Balay Notes: 2306a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2307a30f8f8cSSatish Balay 2308a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2309a30f8f8cSSatish Balay 2310a30f8f8cSSatish Balay .seealso: MatSetOption() 2311a30f8f8cSSatish Balay @*/ 2312a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2313a30f8f8cSSatish Balay { 2314a30f8f8cSSatish Balay PetscFunctionBegin; 231529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 231696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2317a30f8f8cSSatish Balay } 231824d5174aSHong Zhang 23194a2ae208SSatish Balay #undef __FUNCT__ 23204a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 232124d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 232224d5174aSHong Zhang { 232324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2324f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2325ca54ac64SHong Zhang PetscReal atmp; 232687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2327ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2328154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 232987828ca2SBarry Smith PetscScalar *va; 23308a1c53f2SBarry Smith MatScalar *ba; 2331f4c0e9e4SHong Zhang MPI_Status stat; 233224d5174aSHong Zhang 233324d5174aSHong Zhang PetscFunctionBegin; 2334d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2335f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2336f4c0e9e4SHong Zhang 233756faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 233856faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2339f4c0e9e4SHong Zhang 2340f4c0e9e4SHong Zhang bs = a->bs; 2341f4c0e9e4SHong Zhang mbs = a->mbs; 2342f4c0e9e4SHong Zhang Mbs = a->Mbs; 2343f4c0e9e4SHong Zhang ba = b->a; 2344f4c0e9e4SHong Zhang bi = b->i; 2345f4c0e9e4SHong Zhang bj = b->j; 2346ca54ac64SHong Zhang /* 234756faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 234856faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2349ca54ac64SHong Zhang */ 2350f4c0e9e4SHong Zhang 2351f4c0e9e4SHong Zhang /* find ownerships */ 2352f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2353f4c0e9e4SHong Zhang /* 235404d41228SHong Zhang if (!rank){ 235504d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2356f4c0e9e4SHong Zhang } 2357f4c0e9e4SHong Zhang */ 2358f4c0e9e4SHong Zhang 2359f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 236082502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2361ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2362f4c0e9e4SHong Zhang 2363f4c0e9e4SHong Zhang /* row_max for B */ 2364b8475685SHong Zhang if (rank != size-1){ 2365f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2366f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2367f4c0e9e4SHong Zhang brow = bs*i; 2368f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2369f4c0e9e4SHong Zhang bcol = bs*(*bj); 2370f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2371ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 237204d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2373ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2374f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2375f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2376ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2377f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2378ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2379f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2380f4c0e9e4SHong Zhang } 2381f4c0e9e4SHong Zhang } 2382f4c0e9e4SHong Zhang bj++; 2383f4c0e9e4SHong Zhang } 2384f4c0e9e4SHong Zhang } 238504d41228SHong Zhang /* 238604d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 238704d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 238804d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 238904d41228SHong Zhang */ 2390f4c0e9e4SHong Zhang 2391f4c0e9e4SHong Zhang /* send values to its owners */ 2392f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2393f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2394ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 239556faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2396ca54ac64SHong Zhang /* 239756faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 239856faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2399ca54ac64SHong Zhang */ 2400ca54ac64SHong Zhang } 2401f4c0e9e4SHong Zhang } 2402f4c0e9e4SHong Zhang 2403f4c0e9e4SHong Zhang /* receive values */ 2404ca54ac64SHong Zhang if (rank){ 2405f4c0e9e4SHong Zhang rvalues = work; 2406ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2407f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 240856faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2409f4c0e9e4SHong Zhang /* process values */ 2410f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2411ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2412f4c0e9e4SHong Zhang } 2413ca54ac64SHong Zhang /* 241456faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 241556faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2416ca54ac64SHong Zhang */ 2417f4c0e9e4SHong Zhang } 2418ca54ac64SHong Zhang } 2419f4c0e9e4SHong Zhang 2420f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2421ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 242224d5174aSHong Zhang PetscFunctionReturn(0); 242324d5174aSHong Zhang } 24242798e883SHong Zhang 24252798e883SHong Zhang #undef __FUNCT__ 24262798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2427c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 24282798e883SHong Zhang { 24292798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2430ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2431ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2432ffe4fb16SHong Zhang Vec bb1; 2433ffe4fb16SHong Zhang 2434ffe4fb16SHong Zhang PetscFunctionBegin; 2435ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2436ffe4fb16SHong Zhang if (bs > 1) 2437ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2438ffe4fb16SHong Zhang 2439ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2440ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2441ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2442ffe4fb16SHong Zhang its--; 2443ffe4fb16SHong Zhang } 2444ffe4fb16SHong Zhang 2445ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2446ffe4fb16SHong Zhang while (its--){ 2447ffe4fb16SHong Zhang 2448ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2449ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2450ffe4fb16SHong Zhang 2451ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2452ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2453ffe4fb16SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2454ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2455ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2456ffe4fb16SHong Zhang 2457ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2458ffe4fb16SHong Zhang 2459ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2460ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2461ffe4fb16SHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2462ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2463ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2464ffe4fb16SHong Zhang 2465ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2466ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2467ffe4fb16SHong Zhang 2468ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2469ffe4fb16SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2470ffe4fb16SHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2471ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2472ffe4fb16SHong Zhang 2473ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2474ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2475ffe4fb16SHong Zhang 2476ffe4fb16SHong Zhang /* local diagonal sweep */ 2477ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2478ffe4fb16SHong Zhang } 2479ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2480ffe4fb16SHong Zhang } else { 2481ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2482ffe4fb16SHong Zhang } 2483ffe4fb16SHong Zhang PetscFunctionReturn(0); 2484ffe4fb16SHong Zhang } 2485ffe4fb16SHong Zhang 2486ffe4fb16SHong Zhang #undef __FUNCT__ 2487ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2488ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2489ffe4fb16SHong Zhang { 2490ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 24912798e883SHong Zhang int ierr; 2492d05c616dSSatish Balay PetscScalar mone=-1.0; 24932798e883SHong Zhang Vec lvec1,bb1; 24942798e883SHong Zhang 24952798e883SHong Zhang PetscFunctionBegin; 249691723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 24972798e883SHong Zhang if (mat->bs > 1) 24982798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 24992798e883SHong Zhang 2500c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25012798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2502bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25032798e883SHong Zhang its--; 25042798e883SHong Zhang } 25052798e883SHong Zhang 25062798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25072798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25082798e883SHong Zhang while (its--){ 25092798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25102798e883SHong Zhang 25112798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25122798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25132798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25142798e883SHong Zhang 25152798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25162798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25172798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25182798e883SHong Zhang 25192798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25202798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25212798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25222798e883SHong Zhang 25232798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25242798e883SHong Zhang 2525c14dc6b6SHong Zhang /* diagonal sweep */ 2526bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25272798e883SHong Zhang } 25282798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25292798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2530c14dc6b6SHong Zhang } else { 2531c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2532c14dc6b6SHong Zhang } 25332798e883SHong Zhang PetscFunctionReturn(0); 25342798e883SHong Zhang } 25352798e883SHong Zhang 2536