xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision a23d5ecec69aaee6ed47a85ba9d72960301bf762)
173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h"
5a30f8f8cSSatish Balay #include "mpisbaij.h"
6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
7a30f8f8cSSatish Balay 
8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat);
940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat);
1187828ca2SBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *);
1287828ca2SBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode);
1387828ca2SBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1487828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
1587828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
16a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat);
1787828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
1887828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
19d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec);
20c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
21a30f8f8cSSatish Balay 
22a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2387828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
24a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
25a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
26a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
27a30f8f8cSSatish Balay    into the single precision data structures.
28a30f8f8cSSatish Balay */
29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
35a30f8f8cSSatish Balay #else
36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
41a30f8f8cSSatish Balay #endif
42a30f8f8cSSatish Balay 
43a30f8f8cSSatish Balay EXTERN_C_BEGIN
444a2ae208SSatish Balay #undef __FUNCT__
454a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat)
47a30f8f8cSSatish Balay {
48f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
49a30f8f8cSSatish Balay   int          ierr;
50a30f8f8cSSatish Balay 
51a30f8f8cSSatish Balay   PetscFunctionBegin;
52a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   PetscFunctionReturn(0);
55a30f8f8cSSatish Balay }
56a30f8f8cSSatish Balay EXTERN_C_END
57a30f8f8cSSatish Balay 
58a30f8f8cSSatish Balay EXTERN_C_BEGIN
594a2ae208SSatish Balay #undef __FUNCT__
604a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat)
62a30f8f8cSSatish Balay {
63f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
64a30f8f8cSSatish Balay   int          ierr;
65a30f8f8cSSatish Balay 
66a30f8f8cSSatish Balay   PetscFunctionBegin;
67a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   PetscFunctionReturn(0);
70a30f8f8cSSatish Balay }
71a30f8f8cSSatish Balay EXTERN_C_END
72a30f8f8cSSatish Balay 
73a30f8f8cSSatish Balay /*
74a30f8f8cSSatish Balay      Local utility routine that creates a mapping from the global column
75a30f8f8cSSatish Balay    number to the local number in the off-diagonal part of the local
76a30f8f8cSSatish Balay    storage of the matrix.  This is done in a non scable way since the
77a30f8f8cSSatish Balay    length of colmap equals the global matrix length.
78a30f8f8cSSatish Balay */
794a2ae208SSatish Balay #undef __FUNCT__
804a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private"
81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat)
82a30f8f8cSSatish Balay {
83a30f8f8cSSatish Balay   PetscFunctionBegin;
8429bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
8596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
86a30f8f8cSSatish Balay }
87a30f8f8cSSatish Balay 
88a30f8f8cSSatish Balay #define CHUNKSIZE  10
89a30f8f8cSSatish Balay 
90a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
91a30f8f8cSSatish Balay { \
92a30f8f8cSSatish Balay  \
93a30f8f8cSSatish Balay     brow = row/bs;  \
94a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
95a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
96a30f8f8cSSatish Balay       bcol = col/bs; \
97a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
98a30f8f8cSSatish Balay       low = 0; high = nrow; \
99a30f8f8cSSatish Balay       while (high-low > 3) { \
100a30f8f8cSSatish Balay         t = (low+high)/2; \
101a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
102a30f8f8cSSatish Balay         else              low  = t; \
103a30f8f8cSSatish Balay       } \
104a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
105a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
106a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
107a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
108a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
109a30f8f8cSSatish Balay           else                    *bap  = value;  \
110a30f8f8cSSatish Balay           goto a_noinsert; \
111a30f8f8cSSatish Balay         } \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
11429bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
115a30f8f8cSSatish Balay       if (nrow >= rmax) { \
116a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
117a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
118a30f8f8cSSatish Balay         MatScalar *new_a; \
119a30f8f8cSSatish Balay  \
12029bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
121a30f8f8cSSatish Balay  \
122a30f8f8cSSatish Balay         /* malloc new storage space */ \
123a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
12482502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
125a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
126a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
127a30f8f8cSSatish Balay  \
128a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
129a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
130a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
131a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
132a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
133a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
134a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13587828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
136a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
137a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
138a30f8f8cSSatish Balay         /* free up old matrix storage */ \
139a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
140a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
141a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
142a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
143a30f8f8cSSatish Balay         } \
144a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
145a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
146a30f8f8cSSatish Balay  \
147a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
148a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
149b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
150a30f8f8cSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE; \
151a30f8f8cSSatish Balay         a->reallocs++; \
152a30f8f8cSSatish Balay         a->s_nz++; \
153a30f8f8cSSatish Balay       } \
154a30f8f8cSSatish Balay       N = nrow++ - 1;  \
155a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
156a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
157a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
158a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
159a30f8f8cSSatish Balay       } \
160a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
161a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
162a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
163a30f8f8cSSatish Balay       a_noinsert:; \
164a30f8f8cSSatish Balay     ailen[brow] = nrow; \
165a30f8f8cSSatish Balay }
166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
167a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
168a30f8f8cSSatish Balay { \
169a30f8f8cSSatish Balay     brow = row/bs;  \
170a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
171a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
172a30f8f8cSSatish Balay       bcol = col/bs; \
173a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
174a30f8f8cSSatish Balay       low = 0; high = nrow; \
175a30f8f8cSSatish Balay       while (high-low > 3) { \
176a30f8f8cSSatish Balay         t = (low+high)/2; \
177a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
178a30f8f8cSSatish Balay         else              low  = t; \
179a30f8f8cSSatish Balay       } \
180a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
181a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
182a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
183a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
184a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
185a30f8f8cSSatish Balay           else                    *bap  = value;  \
186a30f8f8cSSatish Balay           goto b_noinsert; \
187a30f8f8cSSatish Balay         } \
188a30f8f8cSSatish Balay       } \
189a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
19029bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
191a30f8f8cSSatish Balay       if (nrow >= rmax) { \
192a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
193a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
194a30f8f8cSSatish Balay         MatScalar *new_a; \
195a30f8f8cSSatish Balay  \
19629bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
197a30f8f8cSSatish Balay  \
198a30f8f8cSSatish Balay         /* malloc new storage space */ \
199a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
20082502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
201a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
202a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
203a30f8f8cSSatish Balay  \
204a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
205a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
206a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
207a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
208a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
209a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
210a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
211a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
212a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
213a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
214a30f8f8cSSatish Balay         /* free up old matrix storage */ \
215a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
216a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
217a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
218a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
219a30f8f8cSSatish Balay         } \
220a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
221a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
222a30f8f8cSSatish Balay  \
223a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
224a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
225b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
226a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
227a30f8f8cSSatish Balay         b->reallocs++; \
228a30f8f8cSSatish Balay         b->nz++; \
229a30f8f8cSSatish Balay       } \
230a30f8f8cSSatish Balay       N = nrow++ - 1;  \
231a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
232a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
233a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
234a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
235a30f8f8cSSatish Balay       } \
236a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
237a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
238a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
239a30f8f8cSSatish Balay       b_noinsert:; \
240a30f8f8cSSatish Balay     bilen[brow] = nrow; \
241a30f8f8cSSatish Balay }
242a30f8f8cSSatish Balay #endif
243a30f8f8cSSatish Balay 
244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2454a2ae208SSatish Balay #undef __FUNCT__
2464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
24787828ca2SBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
248a30f8f8cSSatish Balay {
249a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
250a30f8f8cSSatish Balay   int          ierr,i,N = m*n;
251a30f8f8cSSatish Balay   MatScalar    *vsingle;
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   PetscFunctionBegin;
254a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
255a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
25682502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
257a30f8f8cSSatish Balay     b->setvalueslen  = N;
258a30f8f8cSSatish Balay   }
259a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
260a30f8f8cSSatish Balay 
261a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
262a30f8f8cSSatish Balay     vsingle[i] = v[i];
263a30f8f8cSSatish Balay   }
264a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
265a30f8f8cSSatish Balay   PetscFunctionReturn(0);
266a30f8f8cSSatish Balay }
267a30f8f8cSSatish Balay 
2684a2ae208SSatish Balay #undef __FUNCT__
2694a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
27087828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
271a30f8f8cSSatish Balay {
272a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
273a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
274a30f8f8cSSatish Balay   MatScalar   *vsingle;
275a30f8f8cSSatish Balay 
276a30f8f8cSSatish Balay   PetscFunctionBegin;
277a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
278a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
27982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
280a30f8f8cSSatish Balay     b->setvalueslen  = N;
281a30f8f8cSSatish Balay   }
282a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
283a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
284a30f8f8cSSatish Balay     vsingle[i] = v[i];
285a30f8f8cSSatish Balay   }
286a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
287a30f8f8cSSatish Balay   PetscFunctionReturn(0);
288a30f8f8cSSatish Balay }
289a30f8f8cSSatish Balay 
2904a2ae208SSatish Balay #undef __FUNCT__
2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
29287828ca2SBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
293a30f8f8cSSatish Balay {
294a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
295a30f8f8cSSatish Balay   int         ierr,i,N = m*n;
296a30f8f8cSSatish Balay   MatScalar   *vsingle;
297a30f8f8cSSatish Balay 
298a30f8f8cSSatish Balay   PetscFunctionBegin;
29929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3004d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
301a30f8f8cSSatish Balay }
302a30f8f8cSSatish Balay 
3034a2ae208SSatish Balay #undef __FUNCT__
3044a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
30587828ca2SBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
306a30f8f8cSSatish Balay {
307a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
308a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
309a30f8f8cSSatish Balay   MatScalar   *vsingle;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   PetscFunctionBegin;
31229bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3134d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
314a30f8f8cSSatish Balay }
315a30f8f8cSSatish Balay #endif
316a30f8f8cSSatish Balay 
317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
318a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
319a30f8f8cSSatish Balay */
3204a2ae208SSatish Balay #undef __FUNCT__
321e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
322a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
323a30f8f8cSSatish Balay {
324a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
325a30f8f8cSSatish Balay   MatScalar    value;
326b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
327a30f8f8cSSatish Balay   int          ierr,i,j,row,col;
328b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
329a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
330a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
331a30f8f8cSSatish Balay 
332a30f8f8cSSatish Balay   /* Some Variables required in the macro */
333a30f8f8cSSatish Balay   Mat          A = baij->A;
334a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
335a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
336a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
337a30f8f8cSSatish Balay 
338a30f8f8cSSatish Balay   Mat          B = baij->B;
339a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
340a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
341a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
344a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
345a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
346a30f8f8cSSatish Balay 
347a30f8f8cSSatish Balay   /* for stash */
348f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
349f65c83cfSHong Zhang   MatScalar    *v_loc=0;
350a30f8f8cSSatish Balay 
351a30f8f8cSSatish Balay   PetscFunctionBegin;
352a30f8f8cSSatish Balay 
353a30f8f8cSSatish Balay   if(!baij->donotstash){
35482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
35582502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
356a30f8f8cSSatish Balay   }
357a30f8f8cSSatish Balay 
358a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
359a30f8f8cSSatish Balay     if (im[i] < 0) continue;
360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
361b5df2d14SHong Zhang     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
362a30f8f8cSSatish Balay #endif
363a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
364a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
365a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
366f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
367a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
368a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
369a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
370a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
371a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
372a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
373a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
374a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
376b5df2d14SHong Zhang         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");}
377a30f8f8cSSatish Balay #endif
378a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
379a30f8f8cSSatish Balay           if (mat->was_assembled) {
380a30f8f8cSSatish Balay             if (!baij->colmap) {
381a30f8f8cSSatish Balay               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
382a30f8f8cSSatish Balay             }
383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
384a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
38571730473SSatish Balay             col  = col - 1;
386a30f8f8cSSatish Balay #else
38771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
388a30f8f8cSSatish Balay #endif
389a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
390a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
391a30f8f8cSSatish Balay               col =  in[j];
392a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
393a30f8f8cSSatish Balay               B = baij->B;
394a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
395a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
396a30f8f8cSSatish Balay               ba=b->a;
39771730473SSatish Balay             } else col += in[j]%bs;
398a30f8f8cSSatish Balay           } else col = in[j];
399a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
400a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
401a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
402a30f8f8cSSatish Balay         }
403a30f8f8cSSatish Balay       }
404a30f8f8cSSatish Balay     } else {  /* off processor entry */
405a30f8f8cSSatish Balay       if (!baij->donotstash) {
406a30f8f8cSSatish Balay         n_loc = 0;
407a30f8f8cSSatish Balay         for (j=0; j<n; j++){
408f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
409a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
410a30f8f8cSSatish Balay           if (roworiented) {
411a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
412a30f8f8cSSatish Balay           } else {
413a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
414a30f8f8cSSatish Balay           }
415a30f8f8cSSatish Balay           n_loc++;
416a30f8f8cSSatish Balay         }
417a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       }
419a30f8f8cSSatish Balay     }
420a30f8f8cSSatish Balay   }
421a30f8f8cSSatish Balay 
422a30f8f8cSSatish Balay   if(!baij->donotstash){
423a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
424a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
425a30f8f8cSSatish Balay   }
426a30f8f8cSSatish Balay   PetscFunctionReturn(0);
427a30f8f8cSSatish Balay }
428a30f8f8cSSatish Balay 
4294a2ae208SSatish Balay #undef __FUNCT__
430e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
431e03e44c9SSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
432a30f8f8cSSatish Balay {
4330880e062SHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
4340880e062SHong Zhang   MatScalar    *value,*barray=baij->barray;
4350880e062SHong Zhang   PetscTruth   roworiented = baij->roworiented;
4360880e062SHong Zhang   int          ierr,i,j,ii,jj,row,col,rstart=baij->rstart;
4370880e062SHong Zhang   int          rend=baij->rend,cstart=baij->cstart,stepval;
4380880e062SHong Zhang   int          cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
4390880e062SHong Zhang 
440a30f8f8cSSatish Balay   PetscFunctionBegin;
4410880e062SHong Zhang   if(!barray) {
4420880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4430880e062SHong Zhang     baij->barray = barray;
4440880e062SHong Zhang   }
4450880e062SHong Zhang 
4460880e062SHong Zhang   if (roworiented) {
4470880e062SHong Zhang     stepval = (n-1)*bs;
4480880e062SHong Zhang   } else {
4490880e062SHong Zhang     stepval = (m-1)*bs;
4500880e062SHong Zhang   }
4510880e062SHong Zhang   for (i=0; i<m; i++) {
4520880e062SHong Zhang     if (im[i] < 0) continue;
4530880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4540880e062SHong Zhang     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs);
4550880e062SHong Zhang #endif
4560880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4570880e062SHong Zhang       row = im[i] - rstart;
4580880e062SHong Zhang       for (j=0; j<n; j++) {
4590880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4600880e062SHong Zhang         if ((roworiented) && (n == 1)) {
4610880e062SHong Zhang           barray = v + i*bs2;
4620880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
4630880e062SHong Zhang           barray = v + j*bs2;
4640880e062SHong Zhang         } else { /* Here a copy is required */
4650880e062SHong Zhang           if (roworiented) {
4660880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4670880e062SHong Zhang           } else {
4680880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4690880e062SHong Zhang           }
4700880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4710880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4720880e062SHong Zhang               *barray++  = *value++;
4730880e062SHong Zhang             }
4740880e062SHong Zhang           }
4750880e062SHong Zhang           barray -=bs2;
4760880e062SHong Zhang         }
4770880e062SHong Zhang 
4780880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4790880e062SHong Zhang           col  = in[j] - cstart;
4800880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4810880e062SHong Zhang         }
4820880e062SHong Zhang         else if (in[j] < 0) continue;
4830880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4840880e062SHong Zhang         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);}
4850880e062SHong Zhang #endif
4860880e062SHong Zhang         else {
4870880e062SHong Zhang           if (mat->was_assembled) {
4880880e062SHong Zhang             if (!baij->colmap) {
4890880e062SHong Zhang               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
4900880e062SHong Zhang             }
4910880e062SHong Zhang 
4920880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4930880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4940880e062SHong Zhang             { int data;
4950880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4960880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4970880e062SHong Zhang             }
4980880e062SHong Zhang #else
4990880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
5000880e062SHong Zhang #endif
5010880e062SHong Zhang #endif
5020880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
5030880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5040880e062SHong Zhang             col  = (col - 1)/bs;
5050880e062SHong Zhang #else
5060880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5070880e062SHong Zhang #endif
5080880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5090880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5100880e062SHong Zhang               col =  in[j];
5110880e062SHong Zhang             }
5120880e062SHong Zhang           }
5130880e062SHong Zhang           else col = in[j];
5140880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5150880e062SHong Zhang         }
5160880e062SHong Zhang       }
5170880e062SHong Zhang     } else {
5180880e062SHong Zhang       if (!baij->donotstash) {
5190880e062SHong Zhang         if (roworiented) {
5200880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5210880e062SHong Zhang         } else {
5220880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5230880e062SHong Zhang         }
5240880e062SHong Zhang       }
5250880e062SHong Zhang     }
5260880e062SHong Zhang   }
5270880e062SHong Zhang   PetscFunctionReturn(0);
528a30f8f8cSSatish Balay }
529a30f8f8cSSatish Balay 
530a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
531a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
532a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
533a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5344a2ae208SSatish Balay #undef __FUNCT__
5354a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
536a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
537a30f8f8cSSatish Balay {
538a30f8f8cSSatish Balay   PetscFunctionBegin;
53929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
541a30f8f8cSSatish Balay }
542a30f8f8cSSatish Balay 
5434a2ae208SSatish Balay #undef __FUNCT__
5444a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
545a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
546a30f8f8cSSatish Balay {
547a30f8f8cSSatish Balay   PetscFunctionBegin;
54829bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
550a30f8f8cSSatish Balay }
551a30f8f8cSSatish Balay 
5524a2ae208SSatish Balay #undef __FUNCT__
5534a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
55487828ca2SBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
555a30f8f8cSSatish Balay {
556f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
557a30f8f8cSSatish Balay   int          bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
558a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
56229bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
563b5df2d14SHong Zhang     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
564a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
565a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
566a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
56729bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
568b5df2d14SHong Zhang         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
569a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
570a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
571c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
572a30f8f8cSSatish Balay         } else {
573a30f8f8cSSatish Balay           if (!baij->colmap) {
574a30f8f8cSSatish Balay             ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
575a30f8f8cSSatish Balay           }
576a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
577a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
578a30f8f8cSSatish Balay           data --;
579a30f8f8cSSatish Balay #else
580a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
581a30f8f8cSSatish Balay #endif
582a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
583a30f8f8cSSatish Balay           else {
584a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
585c8407628SSatish Balay             ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
586a30f8f8cSSatish Balay           }
587a30f8f8cSSatish Balay         }
588a30f8f8cSSatish Balay       }
589a30f8f8cSSatish Balay     } else {
59029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
591a30f8f8cSSatish Balay     }
592a30f8f8cSSatish Balay   }
593a30f8f8cSSatish Balay  PetscFunctionReturn(0);
594a30f8f8cSSatish Balay }
595a30f8f8cSSatish Balay 
5964a2ae208SSatish Balay #undef __FUNCT__
5974a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
598a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
599a30f8f8cSSatish Balay {
600a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
601bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
602bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
603a30f8f8cSSatish Balay   int        ierr;
604a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
605a30f8f8cSSatish Balay 
606a30f8f8cSSatish Balay   PetscFunctionBegin;
607a30f8f8cSSatish Balay   if (baij->size == 1) {
608a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
609a30f8f8cSSatish Balay   } else {
610a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
611f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
612a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
613a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
614a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
615a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
616a30f8f8cSSatish Balay       /*
61756faa61eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
61856faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
619a30f8f8cSSatish Balay       */
620d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
621a30f8f8cSSatish Balay       /*
62256faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
62356faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm); */
624a30f8f8cSSatish Balay 
625a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
626a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
627a30f8f8cSSatish Balay     } else {
62829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
629a30f8f8cSSatish Balay     }
630a30f8f8cSSatish Balay   }
631a30f8f8cSSatish Balay   PetscFunctionReturn(0);
632a30f8f8cSSatish Balay }
633a30f8f8cSSatish Balay 
634a30f8f8cSSatish Balay /*
635a30f8f8cSSatish Balay   Creates the hash table, and sets the table
636a30f8f8cSSatish Balay   This table is created only once.
637a30f8f8cSSatish Balay   If new entried need to be added to the matrix
638a30f8f8cSSatish Balay   then the hash table has to be destroyed and
639a30f8f8cSSatish Balay   recreated.
640a30f8f8cSSatish Balay */
6414a2ae208SSatish Balay #undef __FUNCT__
6424a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
643a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
644a30f8f8cSSatish Balay {
645a30f8f8cSSatish Balay   PetscFunctionBegin;
64629bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
64796e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay 
6504a2ae208SSatish Balay #undef __FUNCT__
6514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
652a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
653a30f8f8cSSatish Balay {
654a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
655a30f8f8cSSatish Balay   int         ierr,nstash,reallocs;
656a30f8f8cSSatish Balay   InsertMode  addv;
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   PetscFunctionBegin;
659a30f8f8cSSatish Balay   if (baij->donotstash) {
660a30f8f8cSSatish Balay     PetscFunctionReturn(0);
661a30f8f8cSSatish Balay   }
662a30f8f8cSSatish Balay 
663a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
664a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
665a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
66629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
667a30f8f8cSSatish Balay   }
668a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
671a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
672a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
673b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
674a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
675b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
676a30f8f8cSSatish Balay   PetscFunctionReturn(0);
677a30f8f8cSSatish Balay }
678a30f8f8cSSatish Balay 
6794a2ae208SSatish Balay #undef __FUNCT__
6804a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
681a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
682a30f8f8cSSatish Balay {
683a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
684a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
685a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
686a30f8f8cSSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
687a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
688a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
689a30f8f8cSSatish Balay   MatScalar   *val;
690a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
69127f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
6925222a1afSHong Zhang   PetscTruth  flag;
6935222a1afSHong Zhang #endif
694a30f8f8cSSatish Balay 
695a30f8f8cSSatish Balay   PetscFunctionBegin;
696a30f8f8cSSatish Balay 
697a30f8f8cSSatish Balay   if (!baij->donotstash) {
698a30f8f8cSSatish Balay     while (1) {
699a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
700a30f8f8cSSatish Balay       /*
70156faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
70256faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm);
703a30f8f8cSSatish Balay       */
704a30f8f8cSSatish Balay       if (!flg) break;
705a30f8f8cSSatish Balay 
706a30f8f8cSSatish Balay       for (i=0; i<n;) {
707a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
708a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
709a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
710a30f8f8cSSatish Balay         else       ncols = n-i;
711a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
712a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
713a30f8f8cSSatish Balay         i = j;
714a30f8f8cSSatish Balay       }
715a30f8f8cSSatish Balay     }
716a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
717a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
718a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
719a30f8f8cSSatish Balay        restore the original flags */
720a30f8f8cSSatish Balay     r1 = baij->roworiented;
721a30f8f8cSSatish Balay     r2 = a->roworiented;
722a30f8f8cSSatish Balay     r3 = b->roworiented;
723a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
724a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
725a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
726a30f8f8cSSatish Balay     while (1) {
727a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
728a30f8f8cSSatish Balay       if (!flg) break;
729a30f8f8cSSatish Balay 
730a30f8f8cSSatish Balay       for (i=0; i<n;) {
731a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
732a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
733a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
734a30f8f8cSSatish Balay         else       ncols = n-i;
735a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
736a30f8f8cSSatish Balay         i = j;
737a30f8f8cSSatish Balay       }
738a30f8f8cSSatish Balay     }
739a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
740a30f8f8cSSatish Balay     baij->roworiented = r1;
741a30f8f8cSSatish Balay     a->roworiented    = r2;
742a30f8f8cSSatish Balay     b->roworiented    = r3;
743a30f8f8cSSatish Balay   }
744a30f8f8cSSatish Balay 
745a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
746a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
747a30f8f8cSSatish Balay 
748a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
749a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
750a30f8f8cSSatish Balay   /*
751a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
752a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
753a30f8f8cSSatish Balay   */
754a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
755a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
756a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
757c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
758a30f8f8cSSatish Balay     }
759a30f8f8cSSatish Balay   }
760a30f8f8cSSatish Balay 
761a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
76240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
763a30f8f8cSSatish Balay   }
764a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
765a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
766a30f8f8cSSatish Balay 
767a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
768a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
769f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
770a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
771a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
772a30f8f8cSSatish Balay   }
773a30f8f8cSSatish Balay #endif
774a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
775c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
776a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
777a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
778a30f8f8cSSatish Balay   }
779a30f8f8cSSatish Balay 
780a30f8f8cSSatish Balay   if (baij->rowvalues) {
781a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
782a30f8f8cSSatish Balay     baij->rowvalues = 0;
783a30f8f8cSSatish Balay   }
7845222a1afSHong Zhang 
7855222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
7862c535e4dSHong Zhang   ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
7875222a1afSHong Zhang   if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); }
7885222a1afSHong Zhang #endif
78927f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
79027f1aa60SHong Zhang   ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
79127f1aa60SHong Zhang   if (flag) { ierr = MatUseMUMPS_MPIAIJ(mat);CHKERRQ(ierr); }
79227f1aa60SHong Zhang #endif
793a30f8f8cSSatish Balay   PetscFunctionReturn(0);
794a30f8f8cSSatish Balay }
795a30f8f8cSSatish Balay 
7964a2ae208SSatish Balay #undef __FUNCT__
7974a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
798b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
799a30f8f8cSSatish Balay {
800a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
801fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
802a30f8f8cSSatish Balay   PetscTruth        isascii,isdraw;
803b0a32e0cSBarry Smith   PetscViewer       sviewer;
804f3ef73ceSBarry Smith   PetscViewerFormat format;
805a30f8f8cSSatish Balay 
806a30f8f8cSSatish Balay   PetscFunctionBegin;
807b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
808fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
809a30f8f8cSSatish Balay   if (isascii) {
810b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
811456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
812a30f8f8cSSatish Balay       MatInfo info;
813a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
815b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
816b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
817a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
818a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
819b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
820a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
821b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
822b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
823a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
824a30f8f8cSSatish Balay       PetscFunctionReturn(0);
825fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
826b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
827a30f8f8cSSatish Balay       PetscFunctionReturn(0);
828a30f8f8cSSatish Balay     }
829a30f8f8cSSatish Balay   }
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   if (isdraw) {
832b0a32e0cSBarry Smith     PetscDraw       draw;
833a30f8f8cSSatish Balay     PetscTruth isnull;
834b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
835b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
836a30f8f8cSSatish Balay   }
837a30f8f8cSSatish Balay 
838a30f8f8cSSatish Balay   if (size == 1) {
839e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
840a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
841a30f8f8cSSatish Balay   } else {
842a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
843a30f8f8cSSatish Balay     Mat         A;
84465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84565d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
846b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
847a30f8f8cSSatish Balay     MatScalar   *a;
848a30f8f8cSSatish Balay 
849a30f8f8cSSatish Balay     if (!rank) {
850bc0ba53dSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
851a30f8f8cSSatish Balay     } else {
852f65c83cfSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
853a30f8f8cSSatish Balay     }
854b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
855a30f8f8cSSatish Balay 
856a30f8f8cSSatish Balay     /* copy over the A part */
85765d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
858a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
85982502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
860a30f8f8cSSatish Balay 
861a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
862a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
863a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
864a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
865a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
866a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
867a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
868a30f8f8cSSatish Balay           col++; a += bs;
869a30f8f8cSSatish Balay         }
870a30f8f8cSSatish Balay       }
871a30f8f8cSSatish Balay     }
872a30f8f8cSSatish Balay     /* copy over the B part */
87365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87465d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
875a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
876a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
877a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
878a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
879a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
880a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
881a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
882a30f8f8cSSatish Balay           col++; a += bs;
883a30f8f8cSSatish Balay         }
884a30f8f8cSSatish Balay       }
885a30f8f8cSSatish Balay     }
886a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
887a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
888a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
889a30f8f8cSSatish Balay     /*
890a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
891b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
892a30f8f8cSSatish Balay     */
893b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
89465d70643SHong Zhang     if (!rank) {
895e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
896a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
897a30f8f8cSSatish Balay     }
898b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
899a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
900a30f8f8cSSatish Balay   }
901a30f8f8cSSatish Balay   PetscFunctionReturn(0);
902a30f8f8cSSatish Balay }
903a30f8f8cSSatish Balay 
9044a2ae208SSatish Balay #undef __FUNCT__
9054a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
906b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
907a30f8f8cSSatish Balay {
908a30f8f8cSSatish Balay   int        ierr;
909a30f8f8cSSatish Balay   PetscTruth isascii,isdraw,issocket,isbinary;
910a30f8f8cSSatish Balay 
911a30f8f8cSSatish Balay   PetscFunctionBegin;
912b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
913fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
914b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
915fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
916a30f8f8cSSatish Balay   if (isascii || isdraw || issocket || isbinary) {
917a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
918a30f8f8cSSatish Balay   } else {
91929bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
920a30f8f8cSSatish Balay   }
921a30f8f8cSSatish Balay   PetscFunctionReturn(0);
922a30f8f8cSSatish Balay }
923a30f8f8cSSatish Balay 
9244a2ae208SSatish Balay #undef __FUNCT__
9254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
926a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat)
927a30f8f8cSSatish Balay {
928a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
929a30f8f8cSSatish Balay   int         ierr;
930a30f8f8cSSatish Balay 
931a30f8f8cSSatish Balay   PetscFunctionBegin;
932a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
933b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
934a30f8f8cSSatish Balay #endif
935a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
936a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
937a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
938a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
939a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
940a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
941a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
942a30f8f8cSSatish Balay #else
943a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
944a30f8f8cSSatish Balay #endif
945a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
946a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
947a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
94840781036SHong Zhang   if (baij->slvec0) {
94940781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
95040781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
95140781036SHong Zhang   }
95240781036SHong Zhang   if (baij->slvec1) {
95340781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
95440781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
95540781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
95640781036SHong Zhang   }
95740781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
958a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
959a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
960a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
961a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
962a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
963a30f8f8cSSatish Balay #endif
964a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
965a30f8f8cSSatish Balay   PetscFunctionReturn(0);
966a30f8f8cSSatish Balay }
967a30f8f8cSSatish Balay 
9684a2ae208SSatish Balay #undef __FUNCT__
969a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
970a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
971a9d4b620SHong Zhang {
972a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
9734024bf32SHong Zhang   int         ierr,nt,mbs=a->mbs,bs=a->bs;
974a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
975a9d4b620SHong Zhang 
976a9d4b620SHong Zhang   PetscFunctionBegin;
977a9d4b620SHong Zhang   /*
97856faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," _1comm is called ...\n");
97956faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
980a9d4b620SHong Zhang   */
981a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
982a9d4b620SHong Zhang   if (nt != A->n) {
983a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
984a9d4b620SHong Zhang   }
985a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
986a9d4b620SHong Zhang   if (nt != A->m) {
987a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
988a9d4b620SHong Zhang   }
989a9d4b620SHong Zhang 
990a9d4b620SHong Zhang   /* diagonal part */
991a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
992a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
993a9d4b620SHong Zhang 
994a9d4b620SHong Zhang   /* subdiagonal part */
995a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
996a9d4b620SHong Zhang 
997a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
998a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
999a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1000a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1001a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1002a9d4b620SHong Zhang 
1003a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1004a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1005a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1006a9d4b620SHong Zhang 
1007a9d4b620SHong Zhang   /* supperdiagonal part */
1008a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1009a9d4b620SHong Zhang 
1010a9d4b620SHong Zhang   PetscFunctionReturn(0);
1011a9d4b620SHong Zhang }
1012a9d4b620SHong Zhang 
1013a9d4b620SHong Zhang #undef __FUNCT__
101440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
101540781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1016a30f8f8cSSatish Balay {
1017a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1018a30f8f8cSSatish Balay   int         ierr,nt;
1019a30f8f8cSSatish Balay 
1020a30f8f8cSSatish Balay   PetscFunctionBegin;
1021a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1022b5df2d14SHong Zhang   if (nt != A->n) {
102329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1024a30f8f8cSSatish Balay   }
1025a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1026b5df2d14SHong Zhang   if (nt != A->m) {
102729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1028a30f8f8cSSatish Balay   }
102965d70643SHong Zhang 
1030b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1031b941877fSHong Zhang   /* do diagonal part */
1032b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1033b941877fSHong Zhang   /* do supperdiagonal part */
1034b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1035b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1036b941877fSHong Zhang   /* do subdiagonal part */
1037b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1038b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1039b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
104065d70643SHong Zhang 
1041a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1042a30f8f8cSSatish Balay }
1043a30f8f8cSSatish Balay 
10444a2ae208SSatish Balay #undef __FUNCT__
10454a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1046a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1047a30f8f8cSSatish Balay {
1048de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1049a9d4b620SHong Zhang   int          ierr,mbs=a->mbs,bs=a->bs;
1050a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
1051a9d4b620SHong Zhang 
1052a9d4b620SHong Zhang   PetscFunctionBegin;
1053a9d4b620SHong Zhang   /*
105456faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
105556faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1056a9d4b620SHong Zhang   */
1057a9d4b620SHong Zhang   /* diagonal part */
1058a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1059a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1060a9d4b620SHong Zhang 
1061a9d4b620SHong Zhang   /* subdiagonal part */
1062a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1063a9d4b620SHong Zhang 
1064a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
1065a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1066a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1067a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1068a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1069a9d4b620SHong Zhang 
1070a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1071a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1072a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1073a9d4b620SHong Zhang 
1074a9d4b620SHong Zhang   /* supperdiagonal part */
1075a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1076a9d4b620SHong Zhang 
1077a9d4b620SHong Zhang   PetscFunctionReturn(0);
1078a9d4b620SHong Zhang }
1079a9d4b620SHong Zhang 
1080a9d4b620SHong Zhang #undef __FUNCT__
1081a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1082a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1083a9d4b620SHong Zhang {
1084a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1085aa482183SHong Zhang   int        ierr;
1086a30f8f8cSSatish Balay 
1087a30f8f8cSSatish Balay   PetscFunctionBegin;
1088b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1089b941877fSHong Zhang   /* do diagonal part */
1090b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1091b941877fSHong Zhang   /* do supperdiagonal part */
1092b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1093de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1094de8b6608SHong Zhang 
1095b941877fSHong Zhang   /* do subdiagonal part */
1096a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1097a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1098a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1099aa482183SHong Zhang 
1100a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1101a30f8f8cSSatish Balay }
1102a30f8f8cSSatish Balay 
11034a2ae208SSatish Balay #undef __FUNCT__
11044a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1105a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1106a30f8f8cSSatish Balay {
1107a30f8f8cSSatish Balay   PetscFunctionBegin;
110829bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMult().");
110996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1110a30f8f8cSSatish Balay }
1111a30f8f8cSSatish Balay 
11124a2ae208SSatish Balay #undef __FUNCT__
11134a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1114a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1115a30f8f8cSSatish Balay {
1116a30f8f8cSSatish Balay   PetscFunctionBegin;
111729bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMultAdd().");
111896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1119a30f8f8cSSatish Balay }
1120a30f8f8cSSatish Balay 
1121a30f8f8cSSatish Balay /*
1122a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1123a30f8f8cSSatish Balay    diagonal block
1124a30f8f8cSSatish Balay */
11254a2ae208SSatish Balay #undef __FUNCT__
11264a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1127a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1128a30f8f8cSSatish Balay {
1129a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1130a30f8f8cSSatish Balay   int         ierr;
1131a30f8f8cSSatish Balay 
1132a30f8f8cSSatish Balay   PetscFunctionBegin;
113329bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1134a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1135a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1136a30f8f8cSSatish Balay }
1137a30f8f8cSSatish Balay 
11384a2ae208SSatish Balay #undef __FUNCT__
11394a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
114087828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A)
1141a30f8f8cSSatish Balay {
1142a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1143a30f8f8cSSatish Balay   int         ierr;
1144a30f8f8cSSatish Balay 
1145a30f8f8cSSatish Balay   PetscFunctionBegin;
1146a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1147a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1148a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1149a30f8f8cSSatish Balay }
1150a30f8f8cSSatish Balay 
11514a2ae208SSatish Balay #undef __FUNCT__
11524a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
115387828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1154a30f8f8cSSatish Balay {
1155a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
115687828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1157a30f8f8cSSatish Balay   int            bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1158a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1159a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1160a30f8f8cSSatish Balay 
1161a30f8f8cSSatish Balay   PetscFunctionBegin;
116229bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1163a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1164a30f8f8cSSatish Balay 
1165a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1166a30f8f8cSSatish Balay     /*
1167a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1168a30f8f8cSSatish Balay     */
1169a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1170a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1171a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1172a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1173a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1174a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1175a30f8f8cSSatish Balay     }
117687828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1178a30f8f8cSSatish Balay   }
1179a30f8f8cSSatish Balay 
118029bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1181a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1182a30f8f8cSSatish Balay 
1183a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1184a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1185a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1186a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1187a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1188a30f8f8cSSatish Balay   nztot = nzA + nzB;
1189a30f8f8cSSatish Balay 
1190a30f8f8cSSatish Balay   cmap  = mat->garray;
1191a30f8f8cSSatish Balay   if (v  || idx) {
1192a30f8f8cSSatish Balay     if (nztot) {
1193a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1194a30f8f8cSSatish Balay       int imark = -1;
1195a30f8f8cSSatish Balay       if (v) {
1196a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1197a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1198a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1199a30f8f8cSSatish Balay           else break;
1200a30f8f8cSSatish Balay         }
1201a30f8f8cSSatish Balay         imark = i;
1202a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1203a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1204a30f8f8cSSatish Balay       }
1205a30f8f8cSSatish Balay       if (idx) {
1206a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1207a30f8f8cSSatish Balay         if (imark > -1) {
1208a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1209a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1210a30f8f8cSSatish Balay           }
1211a30f8f8cSSatish Balay         } else {
1212a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1213a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1214a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1215a30f8f8cSSatish Balay             else break;
1216a30f8f8cSSatish Balay           }
1217a30f8f8cSSatish Balay           imark = i;
1218a30f8f8cSSatish Balay         }
1219a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1220a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1221a30f8f8cSSatish Balay       }
1222a30f8f8cSSatish Balay     } else {
1223a30f8f8cSSatish Balay       if (idx) *idx = 0;
1224a30f8f8cSSatish Balay       if (v)   *v   = 0;
1225a30f8f8cSSatish Balay     }
1226a30f8f8cSSatish Balay   }
1227a30f8f8cSSatish Balay   *nz = nztot;
1228a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1229a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1230a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1231a30f8f8cSSatish Balay }
1232a30f8f8cSSatish Balay 
12334a2ae208SSatish Balay #undef __FUNCT__
12344a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
123587828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1236a30f8f8cSSatish Balay {
1237a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1238a30f8f8cSSatish Balay 
1239a30f8f8cSSatish Balay   PetscFunctionBegin;
1240a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
124129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1242a30f8f8cSSatish Balay   }
1243a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1244a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1245a30f8f8cSSatish Balay }
1246a30f8f8cSSatish Balay 
12474a2ae208SSatish Balay #undef __FUNCT__
12484a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1249a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1250a30f8f8cSSatish Balay {
1251a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1252a30f8f8cSSatish Balay 
1253a30f8f8cSSatish Balay   PetscFunctionBegin;
1254a30f8f8cSSatish Balay   *bs = baij->bs;
1255a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1256a30f8f8cSSatish Balay }
1257a30f8f8cSSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12594a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1260a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A)
1261a30f8f8cSSatish Balay {
1262a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1263a30f8f8cSSatish Balay   int         ierr;
1264a30f8f8cSSatish Balay 
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1267a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1268a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1269a30f8f8cSSatish Balay }
1270a30f8f8cSSatish Balay 
12714a2ae208SSatish Balay #undef __FUNCT__
12724a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1273a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1274a30f8f8cSSatish Balay {
1275a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1276a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1277a30f8f8cSSatish Balay   int         ierr;
1278a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1279a30f8f8cSSatish Balay 
1280a30f8f8cSSatish Balay   PetscFunctionBegin;
1281f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1282a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1283a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1284a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1285a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1286a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1287a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1288a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1289a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1290a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1291a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1292a30f8f8cSSatish Balay     info->memory       = isend[3];
1293a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1294a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1295d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1296a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1297a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1298a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1299a30f8f8cSSatish Balay     info->memory       = irecv[3];
1300a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1301a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1302d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1304a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1305a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1306a30f8f8cSSatish Balay     info->memory       = irecv[3];
1307a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1308a30f8f8cSSatish Balay   } else {
130929bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1310a30f8f8cSSatish Balay   }
1311f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1312f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1313f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1314f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1315a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1316a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1317a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1318a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1319a30f8f8cSSatish Balay }
1320a30f8f8cSSatish Balay 
13214a2ae208SSatish Balay #undef __FUNCT__
13224a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1323a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op)
1324a30f8f8cSSatish Balay {
1325a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1326a30f8f8cSSatish Balay   int         ierr;
1327a30f8f8cSSatish Balay 
1328a30f8f8cSSatish Balay   PetscFunctionBegin;
1329e98b92d7SKris Buschelman   switch (op) {
1330e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1331e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1332e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1333e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1334e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1335e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1336e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1337a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1338a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1339e98b92d7SKris Buschelman     break;
1340e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1341a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1342a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1343a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1344e98b92d7SKris Buschelman     break;
1345e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1346e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1347e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1348b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1349e98b92d7SKris Buschelman     break;
1350e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1351a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1352a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1353a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1354e98b92d7SKris Buschelman     break;
1355e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1356a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1357e98b92d7SKris Buschelman     break;
1358e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
135929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1360e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1361a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1362e98b92d7SKris Buschelman     break;
1363e98b92d7SKris Buschelman   default:
136429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1365a30f8f8cSSatish Balay   }
1366a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1367a30f8f8cSSatish Balay }
1368a30f8f8cSSatish Balay 
13694a2ae208SSatish Balay #undef __FUNCT__
13708115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
13718115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B)
1372a30f8f8cSSatish Balay {
13738115998fSBarry Smith   int ierr;
1374a30f8f8cSSatish Balay   PetscFunctionBegin;
1375999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13768115998fSBarry Smith   PetscFunctionReturn(0);
1377a30f8f8cSSatish Balay }
1378a30f8f8cSSatish Balay 
13794a2ae208SSatish Balay #undef __FUNCT__
13804a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1381a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1382a30f8f8cSSatish Balay {
1383a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1384a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1385a30f8f8cSSatish Balay   int         ierr,s1,s2,s3;
1386a30f8f8cSSatish Balay 
1387a30f8f8cSSatish Balay   PetscFunctionBegin;
1388a30f8f8cSSatish Balay   if (ll != rr) {
138929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1390a30f8f8cSSatish Balay   }
1391a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1392a30f8f8cSSatish Balay   if (rr) {
1393a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
139429bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1395a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1396a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1397a30f8f8cSSatish Balay     /*} if (ll) { */
1398a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
139929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1400a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1401a30f8f8cSSatish Balay     /* } */
1402a30f8f8cSSatish Balay   /* scale  the diagonal block */
1403a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1404a30f8f8cSSatish Balay 
1405a30f8f8cSSatish Balay   /* if (rr) { */
1406a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1407a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1408a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1409a30f8f8cSSatish Balay   }
1410a30f8f8cSSatish Balay 
1411a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1412a30f8f8cSSatish Balay }
1413a30f8f8cSSatish Balay 
14144a2ae208SSatish Balay #undef __FUNCT__
14154a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
141687828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag)
1417a30f8f8cSSatish Balay {
1418a30f8f8cSSatish Balay   PetscFunctionBegin;
1419c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1420a30f8f8cSSatish Balay }
1421a30f8f8cSSatish Balay 
14224a2ae208SSatish Balay #undef __FUNCT__
14234a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1424a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A)
1425a30f8f8cSSatish Balay {
1426a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1427a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1428a30f8f8cSSatish Balay   static int  called = 0;
1429a30f8f8cSSatish Balay   int         ierr;
1430a30f8f8cSSatish Balay 
1431a30f8f8cSSatish Balay   PetscFunctionBegin;
1432a30f8f8cSSatish Balay   if (!a->rank) {
1433a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1434a30f8f8cSSatish Balay   }
1435a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1436a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1437a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1438a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1439a30f8f8cSSatish Balay }
1440a30f8f8cSSatish Balay 
14414a2ae208SSatish Balay #undef __FUNCT__
14424a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1443a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A)
1444a30f8f8cSSatish Balay {
1445f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1446a30f8f8cSSatish Balay   int         ierr;
1447a30f8f8cSSatish Balay 
1448a30f8f8cSSatish Balay   PetscFunctionBegin;
1449a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1450a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1451a30f8f8cSSatish Balay }
1452a30f8f8cSSatish Balay 
1453a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1454a30f8f8cSSatish Balay 
14554a2ae208SSatish Balay #undef __FUNCT__
14564a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1457a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1458a30f8f8cSSatish Balay {
1459a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1460a30f8f8cSSatish Balay   Mat         a,b,c,d;
1461a30f8f8cSSatish Balay   PetscTruth  flg;
1462a30f8f8cSSatish Balay   int         ierr;
1463a30f8f8cSSatish Balay 
1464a30f8f8cSSatish Balay   PetscFunctionBegin;
1465b5df2d14SHong Zhang   ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr);
1466b5df2d14SHong Zhang   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
1467a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1468a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1469a30f8f8cSSatish Balay 
1470a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1471a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1472a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1473a30f8f8cSSatish Balay   }
1474a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1475a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1476a30f8f8cSSatish Balay }
1477a30f8f8cSSatish Balay 
14784a2ae208SSatish Balay #undef __FUNCT__
14794a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1480273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A)
1481273d9f13SBarry Smith {
1482273d9f13SBarry Smith   int        ierr;
1483273d9f13SBarry Smith 
1484273d9f13SBarry Smith   PetscFunctionBegin;
1485273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1486273d9f13SBarry Smith   PetscFunctionReturn(0);
1487273d9f13SBarry Smith }
1488a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1489a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1490a30f8f8cSSatish Balay   MatSetValues_MPISBAIJ,
1491a30f8f8cSSatish Balay   MatGetRow_MPISBAIJ,
1492a30f8f8cSSatish Balay   MatRestoreRow_MPISBAIJ,
1493a9d4b620SHong Zhang   MatMult_MPISBAIJ,
1494a30f8f8cSSatish Balay   MatMultAdd_MPISBAIJ,
1495a30f8f8cSSatish Balay   MatMultTranspose_MPISBAIJ,
1496a30f8f8cSSatish Balay   MatMultTransposeAdd_MPISBAIJ,
1497a30f8f8cSSatish Balay   0,
1498a30f8f8cSSatish Balay   0,
1499a30f8f8cSSatish Balay   0,
1500a30f8f8cSSatish Balay   0,
1501a30f8f8cSSatish Balay   0,
1502a30f8f8cSSatish Balay   0,
15032798e883SHong Zhang   MatRelax_MPISBAIJ,
1504a30f8f8cSSatish Balay   MatTranspose_MPISBAIJ,
1505a30f8f8cSSatish Balay   MatGetInfo_MPISBAIJ,
1506a30f8f8cSSatish Balay   MatEqual_MPISBAIJ,
1507a30f8f8cSSatish Balay   MatGetDiagonal_MPISBAIJ,
1508a30f8f8cSSatish Balay   MatDiagonalScale_MPISBAIJ,
1509a30f8f8cSSatish Balay   MatNorm_MPISBAIJ,
1510a30f8f8cSSatish Balay   MatAssemblyBegin_MPISBAIJ,
1511a30f8f8cSSatish Balay   MatAssemblyEnd_MPISBAIJ,
1512a30f8f8cSSatish Balay   0,
1513a30f8f8cSSatish Balay   MatSetOption_MPISBAIJ,
1514a30f8f8cSSatish Balay   MatZeroEntries_MPISBAIJ,
1515a30f8f8cSSatish Balay   MatZeroRows_MPISBAIJ,
1516a30f8f8cSSatish Balay   0,
1517a30f8f8cSSatish Balay   0,
1518a30f8f8cSSatish Balay   0,
1519a30f8f8cSSatish Balay   0,
1520273d9f13SBarry Smith   MatSetUpPreallocation_MPISBAIJ,
1521b5df2d14SHong Zhang   0,
1522a30f8f8cSSatish Balay   0,
1523a30f8f8cSSatish Balay   0,
1524a30f8f8cSSatish Balay   0,
1525a30f8f8cSSatish Balay   MatDuplicate_MPISBAIJ,
1526a30f8f8cSSatish Balay   0,
1527a30f8f8cSSatish Balay   0,
1528a30f8f8cSSatish Balay   0,
1529a30f8f8cSSatish Balay   0,
1530a30f8f8cSSatish Balay   0,
15310b15b8e2SSatish Balay   0,
15320b15b8e2SSatish Balay   0,
1533a30f8f8cSSatish Balay   MatGetValues_MPISBAIJ,
1534a30f8f8cSSatish Balay   0,
1535a30f8f8cSSatish Balay   MatPrintHelp_MPISBAIJ,
1536a30f8f8cSSatish Balay   MatScale_MPISBAIJ,
1537a30f8f8cSSatish Balay   0,
1538a30f8f8cSSatish Balay   0,
1539a30f8f8cSSatish Balay   0,
1540a30f8f8cSSatish Balay   MatGetBlockSize_MPISBAIJ,
1541a30f8f8cSSatish Balay   0,
1542a30f8f8cSSatish Balay   0,
1543a30f8f8cSSatish Balay   0,
1544a30f8f8cSSatish Balay   0,
1545a30f8f8cSSatish Balay   0,
1546a30f8f8cSSatish Balay   0,
1547a30f8f8cSSatish Balay   MatSetUnfactored_MPISBAIJ,
1548a30f8f8cSSatish Balay   0,
1549a30f8f8cSSatish Balay   MatSetValuesBlocked_MPISBAIJ,
1550a30f8f8cSSatish Balay   0,
1551a30f8f8cSSatish Balay   0,
1552a30f8f8cSSatish Balay   0,
15538a124369SBarry Smith   MatGetPetscMaps_Petsc,
155424d5174aSHong Zhang   0,
155524d5174aSHong Zhang   0,
155624d5174aSHong Zhang   0,
155724d5174aSHong Zhang   0,
155824d5174aSHong Zhang   0,
155924d5174aSHong Zhang   0,
156024d5174aSHong Zhang   MatGetRowMax_MPISBAIJ};
1561a30f8f8cSSatish Balay 
1562a30f8f8cSSatish Balay 
1563a30f8f8cSSatish Balay EXTERN_C_BEGIN
15644a2ae208SSatish Balay #undef __FUNCT__
15654a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1566a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1567a30f8f8cSSatish Balay {
1568a30f8f8cSSatish Balay   PetscFunctionBegin;
1569a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1570a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1571a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1572a30f8f8cSSatish Balay }
1573a30f8f8cSSatish Balay EXTERN_C_END
1574a30f8f8cSSatish Balay 
1575273d9f13SBarry Smith EXTERN_C_BEGIN
15764a2ae208SSatish Balay #undef __FUNCT__
1577*a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1578*a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1579*a23d5eceSKris Buschelman {
1580*a23d5eceSKris Buschelman   Mat_MPISBAIJ *b;
1581*a23d5eceSKris Buschelman   int          ierr,i,mbs,Mbs;
1582*a23d5eceSKris Buschelman   PetscTruth   flg2;
1583*a23d5eceSKris Buschelman 
1584*a23d5eceSKris Buschelman   PetscFunctionBegin;
1585*a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1586*a23d5eceSKris Buschelman 
1587*a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1588*a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1589*a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1590*a23d5eceSKris Buschelman   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1591*a23d5eceSKris Buschelman   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1592*a23d5eceSKris Buschelman   if (d_nnz) {
1593*a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1594*a23d5eceSKris Buschelman       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1595*a23d5eceSKris Buschelman     }
1596*a23d5eceSKris Buschelman   }
1597*a23d5eceSKris Buschelman   if (o_nnz) {
1598*a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1599*a23d5eceSKris Buschelman       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1600*a23d5eceSKris Buschelman     }
1601*a23d5eceSKris Buschelman   }
1602*a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1603*a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1604*a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1605*a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1606*a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1607*a23d5eceSKris Buschelman 
1608*a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1609*a23d5eceSKris Buschelman   mbs = B->m/bs;
1610*a23d5eceSKris Buschelman   Mbs = B->M/bs;
1611*a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
1612*a23d5eceSKris Buschelman     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1613*a23d5eceSKris Buschelman   }
1614*a23d5eceSKris Buschelman 
1615*a23d5eceSKris Buschelman   b->bs  = bs;
1616*a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1617*a23d5eceSKris Buschelman   b->mbs = mbs;
1618*a23d5eceSKris Buschelman   b->nbs = mbs;
1619*a23d5eceSKris Buschelman   b->Mbs = Mbs;
1620*a23d5eceSKris Buschelman   b->Nbs = Mbs;
1621*a23d5eceSKris Buschelman 
1622*a23d5eceSKris Buschelman   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1623*a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1624*a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1625*a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1626*a23d5eceSKris Buschelman   }
1627*a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1628*a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1629*a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1630*a23d5eceSKris Buschelman   b->cend      = b->rend;
1631*a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1632*a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1633*a23d5eceSKris Buschelman   }
1634*a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1635*a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1636*a23d5eceSKris Buschelman 
1637*a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1638*a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1639*a23d5eceSKris Buschelman 
1640*a23d5eceSKris Buschelman 
1641*a23d5eceSKris Buschelman   ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
1642*a23d5eceSKris Buschelman   PetscLogObjectParent(B,b->A);
1643*a23d5eceSKris Buschelman   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
1644*a23d5eceSKris Buschelman   PetscLogObjectParent(B,b->B);
1645*a23d5eceSKris Buschelman 
1646*a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1647*a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1648*a23d5eceSKris Buschelman 
1649*a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1650*a23d5eceSKris Buschelman }
1651*a23d5eceSKris Buschelman EXTERN_C_END
1652*a23d5eceSKris Buschelman 
1653*a23d5eceSKris Buschelman EXTERN_C_BEGIN
1654*a23d5eceSKris Buschelman #undef __FUNCT__
16554a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1656b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B)
1657b5df2d14SHong Zhang {
1658b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1659ca54ac64SHong Zhang   int          ierr;
1660b5df2d14SHong Zhang   PetscTruth   flg;
1661b5df2d14SHong Zhang 
1662b5df2d14SHong Zhang   PetscFunctionBegin;
1663b5df2d14SHong Zhang 
1664b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1665b0a32e0cSBarry Smith   B->data = (void*)b;
1666b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1667b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1668b5df2d14SHong Zhang 
1669b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1670b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1671b5df2d14SHong Zhang   B->mapping    = 0;
1672b5df2d14SHong Zhang   B->factor     = 0;
1673b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1674b5df2d14SHong Zhang 
1675b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1676b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1677b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1678b5df2d14SHong Zhang 
1679b5df2d14SHong Zhang   /* build local table of row and column ownerships */
168082502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1681273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1682273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1683b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1684b5df2d14SHong Zhang 
1685b5df2d14SHong Zhang   /* build cache for off array entries formed */
1686b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1687b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1688b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1689b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1690b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1691b5df2d14SHong Zhang 
1692f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1693b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
169464a35ccbSBarry Smith   b->setvalueslen     = 0;
1695b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1696b5df2d14SHong Zhang #endif
1697b5df2d14SHong Zhang 
1698b5df2d14SHong Zhang   /* stuff used in block assembly */
1699b5df2d14SHong Zhang   b->barray       = 0;
1700b5df2d14SHong Zhang 
1701b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1702b5df2d14SHong Zhang   b->lvec         = 0;
1703b5df2d14SHong Zhang   b->Mvctx        = 0;
170440781036SHong Zhang   b->slvec0       = 0;
170540781036SHong Zhang   b->slvec0b      = 0;
170640781036SHong Zhang   b->slvec1       = 0;
170740781036SHong Zhang   b->slvec1a      = 0;
170840781036SHong Zhang   b->slvec1b      = 0;
170940781036SHong Zhang   b->sMvctx       = 0;
1710b5df2d14SHong Zhang 
1711b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1712b5df2d14SHong Zhang   b->rowindices   = 0;
1713b5df2d14SHong Zhang   b->rowvalues    = 0;
1714b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1715b5df2d14SHong Zhang 
1716b5df2d14SHong Zhang   /* hash table stuff */
1717b5df2d14SHong Zhang   b->ht           = 0;
1718b5df2d14SHong Zhang   b->hd           = 0;
1719b5df2d14SHong Zhang   b->ht_size      = 0;
1720b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1721b5df2d14SHong Zhang   b->ht_fact      = 0;
1722b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1723b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1724b5df2d14SHong Zhang 
1725e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1726b5df2d14SHong Zhang   if (flg) {
1727f6275e2eSBarry Smith     PetscReal fact = 1.39;
1728b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1729e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1730b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1731b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1732b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1733b5df2d14SHong Zhang   }
1734b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1735b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1736b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1737b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1738b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1739b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1740b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1741b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1742b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1743*a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1744*a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1745*a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1746b5df2d14SHong Zhang   PetscFunctionReturn(0);
1747b5df2d14SHong Zhang }
1748273d9f13SBarry Smith EXTERN_C_END
1749b5df2d14SHong Zhang 
17504a2ae208SSatish Balay #undef __FUNCT__
17514a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1752b5df2d14SHong Zhang /*@C
1753b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1754b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1755b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1756b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang    Collective on Mat
1759b5df2d14SHong Zhang 
1760b5df2d14SHong Zhang    Input Parameters:
1761b5df2d14SHong Zhang +  A - the matrix
1762b5df2d14SHong Zhang .  bs   - size of blockk
1763b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1764b5df2d14SHong Zhang            submatrix  (same for all local rows)
1765b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17666d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17676d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17686d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1769b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1770b5df2d14SHong Zhang            submatrix (same for all local rows).
1771b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1772b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1773b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1774b5df2d14SHong Zhang 
1775b5df2d14SHong Zhang 
1776b5df2d14SHong Zhang    Options Database Keys:
1777b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1778b5df2d14SHong Zhang                      block calculations (much slower)
1779b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1780b5df2d14SHong Zhang 
1781b5df2d14SHong Zhang    Notes:
1782b5df2d14SHong Zhang 
1783b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1784b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1785b5df2d14SHong Zhang 
1786b5df2d14SHong Zhang    Storage Information:
1787b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1788b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1789b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1790b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1791b5df2d14SHong Zhang 
1792b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1793b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1794b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1795b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1796b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1797b5df2d14SHong Zhang 
1798b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1799b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1800b5df2d14SHong Zhang 
1801b5df2d14SHong Zhang .vb
1802b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1803b5df2d14SHong Zhang           -------------------
1804b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1805b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1806b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1807b5df2d14SHong Zhang           -------------------
1808b5df2d14SHong Zhang .ve
1809b5df2d14SHong Zhang 
1810b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1811b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18126d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18136d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1814b5df2d14SHong Zhang 
18156d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18166d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1817b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1818b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1819b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1820b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1821b5df2d14SHong Zhang    matrices.
1822b5df2d14SHong Zhang 
1823b5df2d14SHong Zhang    Level: intermediate
1824b5df2d14SHong Zhang 
1825b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1826b5df2d14SHong Zhang 
1827b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1828b5df2d14SHong Zhang @*/
1829b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1830b5df2d14SHong Zhang {
1831*a23d5eceSKris Buschelman   int ierr,(*f)(Mat,int,int,int*,int,int*);
1832b5df2d14SHong Zhang 
1833b5df2d14SHong Zhang   PetscFunctionBegin;
1834*a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1835*a23d5eceSKris Buschelman   if (f) {
1836*a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1837b5df2d14SHong Zhang   }
1838b5df2d14SHong Zhang   PetscFunctionReturn(0);
1839b5df2d14SHong Zhang }
1840b5df2d14SHong Zhang 
18414a2ae208SSatish Balay #undef __FUNCT__
18424a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1843a30f8f8cSSatish Balay /*@C
1844a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1845a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1846a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1847a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1848a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1849a30f8f8cSSatish Balay 
1850a30f8f8cSSatish Balay    Collective on MPI_Comm
1851a30f8f8cSSatish Balay 
1852a30f8f8cSSatish Balay    Input Parameters:
1853a30f8f8cSSatish Balay +  comm - MPI communicator
1854a30f8f8cSSatish Balay .  bs   - size of blockk
1855a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1856a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1857a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1858a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1859a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1860a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1861a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1862a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1863a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1864a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1865a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18666d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18676d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18686d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1869a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1870a30f8f8cSSatish Balay            submatrix (same for all local rows).
1871a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1872a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1873a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1874a30f8f8cSSatish Balay 
1875a30f8f8cSSatish Balay    Output Parameter:
1876a30f8f8cSSatish Balay .  A - the matrix
1877a30f8f8cSSatish Balay 
1878a30f8f8cSSatish Balay    Options Database Keys:
1879a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1880a30f8f8cSSatish Balay                      block calculations (much slower)
1881a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1882a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1883a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1884a30f8f8cSSatish Balay 
1885a30f8f8cSSatish Balay    Notes:
1886a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1887a30f8f8cSSatish Balay    (possibly both).
1888a30f8f8cSSatish Balay 
1889a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1890a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1891a30f8f8cSSatish Balay 
1892a30f8f8cSSatish Balay    Storage Information:
1893a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1894a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1895a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1896a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1897a30f8f8cSSatish Balay 
1898a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1899a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1900a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1901a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1902a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1903a30f8f8cSSatish Balay 
1904a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1905a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1906a30f8f8cSSatish Balay 
1907a30f8f8cSSatish Balay .vb
1908a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1909a30f8f8cSSatish Balay           -------------------
1910a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1911a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1912a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1913a30f8f8cSSatish Balay           -------------------
1914a30f8f8cSSatish Balay .ve
1915a30f8f8cSSatish Balay 
1916a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1917a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19186d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19196d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1920a30f8f8cSSatish Balay 
19216d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19226d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1923a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1924a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1925a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1926a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1927a30f8f8cSSatish Balay    matrices.
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay    Level: intermediate
1930a30f8f8cSSatish Balay 
1931a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1932a30f8f8cSSatish Balay 
1933a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1934a30f8f8cSSatish Balay @*/
1935a30f8f8cSSatish Balay 
1936a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
1937a30f8f8cSSatish Balay {
1938273d9f13SBarry Smith   int ierr,size;
1939a30f8f8cSSatish Balay 
1940a30f8f8cSSatish Balay   PetscFunctionBegin;
1941b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1942273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1943273d9f13SBarry Smith   if (size > 1) {
1944b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1945b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1946273d9f13SBarry Smith   } else {
1947273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1948273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1949273d9f13SBarry Smith   }
1950a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1951a30f8f8cSSatish Balay }
1952a30f8f8cSSatish Balay 
1953a30f8f8cSSatish Balay 
19544a2ae208SSatish Balay #undef __FUNCT__
19554a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
1956a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1957a30f8f8cSSatish Balay {
1958a30f8f8cSSatish Balay   Mat          mat;
1959a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1960a30f8f8cSSatish Balay   int          ierr,len=0;
1961a30f8f8cSSatish Balay 
1962a30f8f8cSSatish Balay   PetscFunctionBegin;
1963a30f8f8cSSatish Balay   *newmat       = 0;
1964b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1965b5df2d14SHong Zhang   ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr);
1966273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
1967b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1968a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
1969a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
1970a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
1971a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
1972a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
1973a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
1974a30f8f8cSSatish Balay 
1975a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1976a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1977a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1978a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1979a30f8f8cSSatish Balay   a->size         = oldmat->size;
1980a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1981a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1982a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1983a30f8f8cSSatish Balay   a->rowindices   = 0;
1984a30f8f8cSSatish Balay   a->rowvalues    = 0;
1985a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1986a30f8f8cSSatish Balay   a->barray       = 0;
1987a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1988a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1989a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1990a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1991a30f8f8cSSatish Balay 
1992a30f8f8cSSatish Balay   /* hash table stuff */
1993a30f8f8cSSatish Balay   a->ht           = 0;
1994a30f8f8cSSatish Balay   a->hd           = 0;
1995a30f8f8cSSatish Balay   a->ht_size      = 0;
1996a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1997a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1998a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1999a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2000a30f8f8cSSatish Balay 
200182502324SSatish Balay   ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr);
2002b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
2003a30f8f8cSSatish Balay   a->cowners    = a->rowners + a->size + 2;
2004a30f8f8cSSatish Balay   a->rowners_bs = a->cowners + a->size + 2;
2005a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
2006a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2007a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2008a30f8f8cSSatish Balay   if (oldmat->colmap) {
2009a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2010a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2011a30f8f8cSSatish Balay #else
201282502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2013b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2014a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2015a30f8f8cSSatish Balay #endif
2016a30f8f8cSSatish Balay   } else a->colmap = 0;
2017a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
201882502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2019b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2020a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2021a30f8f8cSSatish Balay   } else a->garray = 0;
2022a30f8f8cSSatish Balay 
2023a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2024b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2025a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2026a30f8f8cSSatish Balay 
2027b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
2028a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2029b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2030a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2031b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2032b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2033a30f8f8cSSatish Balay   *newmat = mat;
2034a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2035a30f8f8cSSatish Balay }
2036a30f8f8cSSatish Balay 
2037a30f8f8cSSatish Balay #include "petscsys.h"
2038a30f8f8cSSatish Balay 
2039273d9f13SBarry Smith EXTERN_C_BEGIN
20404a2ae208SSatish Balay #undef __FUNCT__
20414a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2042b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
2043a30f8f8cSSatish Balay {
2044a30f8f8cSSatish Balay   Mat          A;
2045a30f8f8cSSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
204687828ca2SBarry Smith   PetscScalar  *vals,*buf;
2047a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2048a30f8f8cSSatish Balay   MPI_Status   status;
2049a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2050a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2051a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2052a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2053a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
205427f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
205527fa2452SHong Zhang   PetscTruth   flag;
205627fa2452SHong Zhang #endif
2057a30f8f8cSSatish Balay 
2058a30f8f8cSSatish Balay   PetscFunctionBegin;
2059b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2060a30f8f8cSSatish Balay 
2061a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2062a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2063a30f8f8cSSatish Balay   if (!rank) {
2064b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2065a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2066552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2067a30f8f8cSSatish Balay     if (header[3] < 0) {
206829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2069a30f8f8cSSatish Balay     }
2070a30f8f8cSSatish Balay   }
2071a30f8f8cSSatish Balay 
2072a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2073a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2074a30f8f8cSSatish Balay 
207529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2076a30f8f8cSSatish Balay 
2077a30f8f8cSSatish Balay   /*
2078a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2079a30f8f8cSSatish Balay      divisible by the blocksize
2080a30f8f8cSSatish Balay   */
2081a30f8f8cSSatish Balay   Mbs        = M/bs;
2082a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2083a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2084a30f8f8cSSatish Balay   else                  Mbs++;
2085a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2086b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2087a30f8f8cSSatish Balay   }
2088a30f8f8cSSatish Balay 
2089a30f8f8cSSatish Balay   /* determine ownership of all rows */
2090a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2091a30f8f8cSSatish Balay   m          = mbs*bs;
2092b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2093a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2094a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2095a30f8f8cSSatish Balay   rowners[0] = 0;
2096a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2097a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2098a30f8f8cSSatish Balay   rstart = rowners[rank];
2099a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2100a30f8f8cSSatish Balay 
2101a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
210282502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay   if (!rank) {
2104b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2105a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2106a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
210782502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2108a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2109a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2110a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2111a30f8f8cSSatish Balay   } else {
2112a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2113a30f8f8cSSatish Balay   }
2114a30f8f8cSSatish Balay 
21150222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2116a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
211782502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2118a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2119a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2120a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2121a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2122a30f8f8cSSatish Balay       }
2123a30f8f8cSSatish Balay     }
2124a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2125a30f8f8cSSatish Balay 
2126a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2127a30f8f8cSSatish Balay     maxnz = 0;
2128a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2129a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2130a30f8f8cSSatish Balay     }
213182502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2132a30f8f8cSSatish Balay 
2133a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2134a30f8f8cSSatish Balay     nz     = procsnz[0];
213582502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2136a30f8f8cSSatish Balay     mycols = ibuf;
2137a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2138a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2139a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2140a30f8f8cSSatish Balay 
2141a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2142a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2143a30f8f8cSSatish Balay       nz   = procsnz[i];
2144a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2145a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2146a30f8f8cSSatish Balay     }
2147a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2148a30f8f8cSSatish Balay     if (size != 1) {
2149a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2150a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2152a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2153a30f8f8cSSatish Balay     }
2154a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21550222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2156a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2157a30f8f8cSSatish Balay     nz = 0;
2158a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2159a30f8f8cSSatish Balay       nz += locrowlens[i];
2160a30f8f8cSSatish Balay     }
216182502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2162a30f8f8cSSatish Balay     mycols = ibuf;
2163a30f8f8cSSatish Balay     /* receive message of column indices*/
2164a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2165a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
216629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2167a30f8f8cSSatish Balay   }
2168a30f8f8cSSatish Balay 
2169a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
217082502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
217282502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2173a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2174a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2175a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2176a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2177a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2178a30f8f8cSSatish Balay     dcount  = 0;
2179a30f8f8cSSatish Balay     odcount = 0;
2180a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2181a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2182a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21830222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2184a30f8f8cSSatish Balay         if (!mask[tmp]) {
2185a30f8f8cSSatish Balay           mask[tmp] = 1;
21860222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21870222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2188a30f8f8cSSatish Balay         }
2189a30f8f8cSSatish Balay       }
2190a30f8f8cSSatish Balay       rowcount++;
2191a30f8f8cSSatish Balay     }
2192a30f8f8cSSatish Balay 
21930222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
21940222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2195a30f8f8cSSatish Balay 
2196a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2197a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2198a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2199a30f8f8cSSatish Balay   }
2200a30f8f8cSSatish Balay 
2201a30f8f8cSSatish Balay   /* create our matrix */
22027e06b45fSHong Zhang   ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat);
2203bfe19f1aSHong Zhang   CHKERRQ(ierr);
2204a30f8f8cSSatish Balay   A = *newmat;
2205273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2206a30f8f8cSSatish Balay 
2207a30f8f8cSSatish Balay   if (!rank) {
220887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2210a30f8f8cSSatish Balay     nz = procsnz[0];
2211a30f8f8cSSatish Balay     vals = buf;
2212a30f8f8cSSatish Balay     mycols = ibuf;
2213a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2214a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2215a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2216a30f8f8cSSatish Balay 
2217a30f8f8cSSatish Balay     /* insert into matrix */
2218a30f8f8cSSatish Balay     jj      = rstart*bs;
2219a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22207e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay       mycols += locrowlens[i];
2222a30f8f8cSSatish Balay       vals   += locrowlens[i];
2223a30f8f8cSSatish Balay       jj++;
2224a30f8f8cSSatish Balay     }
22257e06b45fSHong Zhang 
2226a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2227a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2228a30f8f8cSSatish Balay       nz   = procsnz[i];
2229a30f8f8cSSatish Balay       vals = buf;
2230a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2231a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay     }
2233a30f8f8cSSatish Balay     /* the last proc */
2234a30f8f8cSSatish Balay     if (size != 1){
2235a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2236a30f8f8cSSatish Balay       vals = buf;
2237a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2238a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2239a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2240a30f8f8cSSatish Balay     }
2241a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22427e06b45fSHong Zhang 
2243a30f8f8cSSatish Balay   } else {
2244a30f8f8cSSatish Balay     /* receive numeric values */
224587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2246a30f8f8cSSatish Balay 
2247a30f8f8cSSatish Balay     /* receive message of values*/
2248a30f8f8cSSatish Balay     vals   = buf;
2249a30f8f8cSSatish Balay     mycols = ibuf;
2250a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
225229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2253a30f8f8cSSatish Balay 
2254a30f8f8cSSatish Balay     /* insert into matrix */
2255a30f8f8cSSatish Balay     jj      = rstart*bs;
2256a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2257a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay       mycols += locrowlens[i];
2259a30f8f8cSSatish Balay       vals   += locrowlens[i];
2260a30f8f8cSSatish Balay       jj++;
2261a30f8f8cSSatish Balay     }
2262a30f8f8cSSatish Balay   }
22637e06b45fSHong Zhang 
2264a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2267a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2269a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2271a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
227227fa2452SHong Zhang #if defined(PETSC_HAVE_SPOOLES)
227327fa2452SHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
22740f39d4ecSHong Zhang   if (flag) {
22750f39d4ecSHong Zhang     if (size == 1) {
22760f39d4ecSHong Zhang       ierr = MatUseSpooles_SeqAIJ(A);CHKERRQ(ierr);
22770f39d4ecSHong Zhang     } else {
22780f39d4ecSHong Zhang       ierr = MatUseSpooles_MPISBAIJ(A);CHKERRQ(ierr);
22790f39d4ecSHong Zhang     }
22800f39d4ecSHong Zhang   }
228127fa2452SHong Zhang #endif
228227f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
228327f1aa60SHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
228427f1aa60SHong Zhang   if (flag) {
228527f1aa60SHong Zhang       ierr = MatUseMUMPS_MPIAIJ(A);CHKERRQ(ierr);
228627f1aa60SHong Zhang   }
228727f1aa60SHong Zhang #endif
2288a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2289a30f8f8cSSatish Balay }
2290273d9f13SBarry Smith EXTERN_C_END
2291a30f8f8cSSatish Balay 
22924a2ae208SSatish Balay #undef __FUNCT__
22934a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2294a30f8f8cSSatish Balay /*@
2295a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2296a30f8f8cSSatish Balay 
2297a30f8f8cSSatish Balay    Input Parameters:
2298a30f8f8cSSatish Balay .  mat  - the matrix
2299a30f8f8cSSatish Balay .  fact - factor
2300a30f8f8cSSatish Balay 
2301a30f8f8cSSatish Balay    Collective on Mat
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay    Level: advanced
2304a30f8f8cSSatish Balay 
2305a30f8f8cSSatish Balay   Notes:
2306a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2307a30f8f8cSSatish Balay 
2308a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2309a30f8f8cSSatish Balay 
2310a30f8f8cSSatish Balay .seealso: MatSetOption()
2311a30f8f8cSSatish Balay @*/
2312a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2313a30f8f8cSSatish Balay {
2314a30f8f8cSSatish Balay   PetscFunctionBegin;
231529bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
231696e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2317a30f8f8cSSatish Balay }
231824d5174aSHong Zhang 
23194a2ae208SSatish Balay #undef __FUNCT__
23204a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
232124d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v)
232224d5174aSHong Zhang {
232324d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2324f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2325ca54ac64SHong Zhang   PetscReal    atmp;
232687828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2327ca54ac64SHong Zhang   int          ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2328154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
232987828ca2SBarry Smith   PetscScalar  *va;
23308a1c53f2SBarry Smith   MatScalar    *ba;
2331f4c0e9e4SHong Zhang   MPI_Status   stat;
233224d5174aSHong Zhang 
233324d5174aSHong Zhang   PetscFunctionBegin;
2334d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
2335f4c0e9e4SHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2336f4c0e9e4SHong Zhang 
233756faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
233856faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2339f4c0e9e4SHong Zhang 
2340f4c0e9e4SHong Zhang   bs   = a->bs;
2341f4c0e9e4SHong Zhang   mbs  = a->mbs;
2342f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2343f4c0e9e4SHong Zhang   ba   = b->a;
2344f4c0e9e4SHong Zhang   bi   = b->i;
2345f4c0e9e4SHong Zhang   bj   = b->j;
2346ca54ac64SHong Zhang   /*
234756faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
234856faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
2349ca54ac64SHong Zhang   */
2350f4c0e9e4SHong Zhang 
2351f4c0e9e4SHong Zhang   /* find ownerships */
2352f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2353f4c0e9e4SHong Zhang   /*
235404d41228SHong Zhang   if (!rank){
235504d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2356f4c0e9e4SHong Zhang   }
2357f4c0e9e4SHong Zhang   */
2358f4c0e9e4SHong Zhang 
2359f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
236082502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2361ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2362f4c0e9e4SHong Zhang 
2363f4c0e9e4SHong Zhang   /* row_max for B */
2364b8475685SHong Zhang   if (rank != size-1){
2365f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2366f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2367f4c0e9e4SHong Zhang       brow  = bs*i;
2368f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2369f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2370f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2371ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
237204d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2373ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2374f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2375f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2376ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2377f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2378ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2379f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2380f4c0e9e4SHong Zhang           }
2381f4c0e9e4SHong Zhang         }
2382f4c0e9e4SHong Zhang         bj++;
2383f4c0e9e4SHong Zhang       }
2384f4c0e9e4SHong Zhang     }
238504d41228SHong Zhang     /*
238604d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
238704d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
238804d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
238904d41228SHong Zhang       */
2390f4c0e9e4SHong Zhang 
2391f4c0e9e4SHong Zhang     /* send values to its owners */
2392f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2393f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2394ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
239556faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2396ca54ac64SHong Zhang       /*
239756faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
239856faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2399ca54ac64SHong Zhang       */
2400ca54ac64SHong Zhang     }
2401f4c0e9e4SHong Zhang   }
2402f4c0e9e4SHong Zhang 
2403f4c0e9e4SHong Zhang   /* receive values */
2404ca54ac64SHong Zhang   if (rank){
2405f4c0e9e4SHong Zhang     rvalues = work;
2406ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2407f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
240856faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2409f4c0e9e4SHong Zhang       /* process values */
2410f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2411ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2412f4c0e9e4SHong Zhang       }
2413ca54ac64SHong Zhang       /*
241456faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
241556faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2416ca54ac64SHong Zhang       */
2417f4c0e9e4SHong Zhang     }
2418ca54ac64SHong Zhang   }
2419f4c0e9e4SHong Zhang 
2420f4c0e9e4SHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2421ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
242224d5174aSHong Zhang   PetscFunctionReturn(0);
242324d5174aSHong Zhang }
24242798e883SHong Zhang 
24252798e883SHong Zhang #undef __FUNCT__
24262798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2427c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
24282798e883SHong Zhang {
24292798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2430ffe4fb16SHong Zhang   int            ierr,mbs=mat->mbs,bs=mat->bs;
2431ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2432ffe4fb16SHong Zhang   Vec            bb1;
2433ffe4fb16SHong Zhang 
2434ffe4fb16SHong Zhang   PetscFunctionBegin;
2435ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2436ffe4fb16SHong Zhang   if (bs > 1)
2437ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2438ffe4fb16SHong Zhang 
2439ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2440ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2441ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2442ffe4fb16SHong Zhang       its--;
2443ffe4fb16SHong Zhang     }
2444ffe4fb16SHong Zhang 
2445ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2446ffe4fb16SHong Zhang     while (its--){
2447ffe4fb16SHong Zhang 
2448ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2449ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2450ffe4fb16SHong Zhang 
2451ffe4fb16SHong Zhang       /* copy xx into slvec0a */
2452ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2453ffe4fb16SHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2454ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2455ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2456ffe4fb16SHong Zhang 
2457ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2458ffe4fb16SHong Zhang 
2459ffe4fb16SHong Zhang       /* copy bb into slvec1a */
2460ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2461ffe4fb16SHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2462ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2463ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2464ffe4fb16SHong Zhang 
2465ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2466ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2467ffe4fb16SHong Zhang 
2468ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2469ffe4fb16SHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2470ffe4fb16SHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2471ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2472ffe4fb16SHong Zhang 
2473ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2474ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2475ffe4fb16SHong Zhang 
2476ffe4fb16SHong Zhang       /* local diagonal sweep */
2477ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2478ffe4fb16SHong Zhang     }
2479ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2480ffe4fb16SHong Zhang   } else {
2481ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2482ffe4fb16SHong Zhang   }
2483ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2484ffe4fb16SHong Zhang }
2485ffe4fb16SHong Zhang 
2486ffe4fb16SHong Zhang #undef __FUNCT__
2487ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2488ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2489ffe4fb16SHong Zhang {
2490ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
24912798e883SHong Zhang   int            ierr;
2492d05c616dSSatish Balay   PetscScalar    mone=-1.0;
24932798e883SHong Zhang   Vec            lvec1,bb1;
24942798e883SHong Zhang 
24952798e883SHong Zhang   PetscFunctionBegin;
249691723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
24972798e883SHong Zhang   if (mat->bs > 1)
24982798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24992798e883SHong Zhang 
2500c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25012798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2502bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25032798e883SHong Zhang       its--;
25042798e883SHong Zhang     }
25052798e883SHong Zhang 
25062798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25072798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25082798e883SHong Zhang     while (its--){
25092798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25102798e883SHong Zhang 
25112798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25122798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
25132798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
25142798e883SHong Zhang 
25152798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25162798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25172798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25182798e883SHong Zhang 
25192798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
25202798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
25212798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25222798e883SHong Zhang 
25232798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25242798e883SHong Zhang 
2525c14dc6b6SHong Zhang       /* diagonal sweep */
2526bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25272798e883SHong Zhang     }
25282798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25292798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2530c14dc6b6SHong Zhang   } else {
2531c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2532c14dc6b6SHong Zhang   }
25332798e883SHong Zhang   PetscFunctionReturn(0);
25342798e883SHong Zhang }
25352798e883SHong Zhang 
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