xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision a2b725a8db0d6bf6cc2a1c6df7dd8029aadfff6e)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10b147fbf3SStefano Zampini 
11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
13b147fbf3SStefano Zampini {
14b147fbf3SStefano Zampini   Mat            preallocator;
15b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
16b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
17b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
18b147fbf3SStefano Zampini   PetscErrorCode ierr;
19b147fbf3SStefano Zampini 
20b147fbf3SStefano Zampini   PetscFunctionBegin;
21b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
23b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
24b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
25b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
26b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
27b147fbf3SStefano Zampini   }
28b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
29b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
30b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
31b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
32b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
39b147fbf3SStefano Zampini     PetscInt          ncols;
40b147fbf3SStefano Zampini     const PetscInt    *row;
41b147fbf3SStefano Zampini     const PetscScalar *vals;
42b147fbf3SStefano Zampini 
43b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
44b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
45b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
46b147fbf3SStefano Zampini       if (symm && symm[i]) {
47b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       }
49b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
50b147fbf3SStefano Zampini     }
51b147fbf3SStefano Zampini   }
52b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
53b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
54b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
55b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   PetscFunctionReturn(0);
57b147fbf3SStefano Zampini }
58b147fbf3SStefano Zampini 
59b147fbf3SStefano Zampini static PetscErrorCode MatConvert_MPISBAIJ_XAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
60b147fbf3SStefano Zampini {
61b147fbf3SStefano Zampini   Mat            B;
62b147fbf3SStefano Zampini   PetscErrorCode ierr;
63b147fbf3SStefano Zampini   PetscInt       r;
64b147fbf3SStefano Zampini 
65b147fbf3SStefano Zampini   PetscFunctionBegin;
66b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
67b147fbf3SStefano Zampini     PetscBool symm = PETSC_TRUE;
68b147fbf3SStefano Zampini     PetscInt  bs;
69b147fbf3SStefano Zampini 
70b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
71b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
72b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
73b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
77b147fbf3SStefano Zampini     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
78b147fbf3SStefano Zampini     ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
79b147fbf3SStefano Zampini     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
80b147fbf3SStefano Zampini   } else B = *newmat;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
83b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
84b147fbf3SStefano Zampini     PetscInt          ncols;
85b147fbf3SStefano Zampini     const PetscInt    *row;
86b147fbf3SStefano Zampini     const PetscScalar *vals;
87b147fbf3SStefano Zampini 
88b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
89b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
90b147fbf3SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
91b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
92b147fbf3SStefano Zampini   }
93b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
94b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
95b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
96b147fbf3SStefano Zampini 
97b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
98b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
99b147fbf3SStefano Zampini   } else {
100b147fbf3SStefano Zampini     *newmat = B;
101b147fbf3SStefano Zampini   }
102b147fbf3SStefano Zampini   PetscFunctionReturn(0);
103b147fbf3SStefano Zampini }
104b147fbf3SStefano Zampini 
1057087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
106a30f8f8cSSatish Balay {
107f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
108dfbe8321SBarry Smith   PetscErrorCode ierr;
109a30f8f8cSSatish Balay 
110a30f8f8cSSatish Balay   PetscFunctionBegin;
111a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
112a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
113a30f8f8cSSatish Balay   PetscFunctionReturn(0);
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay 
1167087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
117a30f8f8cSSatish Balay {
118f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
119dfbe8321SBarry Smith   PetscErrorCode ierr;
120a30f8f8cSSatish Balay 
121a30f8f8cSSatish Balay   PetscFunctionBegin;
122a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
123a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
124a30f8f8cSSatish Balay   PetscFunctionReturn(0);
125a30f8f8cSSatish Balay }
126a30f8f8cSSatish Balay 
127d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
128a30f8f8cSSatish Balay   { \
129a30f8f8cSSatish Balay  \
130a30f8f8cSSatish Balay     brow = row/bs;  \
131a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
132a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
133a30f8f8cSSatish Balay     bcol = col/bs; \
134a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
135a30f8f8cSSatish Balay     low  = 0; high = nrow; \
136a30f8f8cSSatish Balay     while (high-low > 3) { \
137a30f8f8cSSatish Balay       t = (low+high)/2; \
138a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
139a30f8f8cSSatish Balay       else              low  = t; \
140a30f8f8cSSatish Balay     } \
141a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
142a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
143a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
144a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
145a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
146a30f8f8cSSatish Balay         else                    *bap  = value;  \
147a30f8f8cSSatish Balay         goto a_noinsert; \
148a30f8f8cSSatish Balay       } \
149a30f8f8cSSatish Balay     } \
150a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
151d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
152fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
153a30f8f8cSSatish Balay     N = nrow++ - 1;  \
154a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
155a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
156a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
157a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
158a30f8f8cSSatish Balay     } \
159a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
160a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
161a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
162e56f5c9eSBarry Smith     A->nonzerostate++;\
163a30f8f8cSSatish Balay a_noinsert:; \
164a30f8f8cSSatish Balay     ailen[brow] = nrow; \
165a30f8f8cSSatish Balay   }
166e5e170daSBarry Smith 
167d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
168a30f8f8cSSatish Balay   { \
169a30f8f8cSSatish Balay     brow = row/bs;  \
170a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
171a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
172a30f8f8cSSatish Balay     bcol = col/bs; \
173a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
174a30f8f8cSSatish Balay     low  = 0; high = nrow; \
175a30f8f8cSSatish Balay     while (high-low > 3) { \
176a30f8f8cSSatish Balay       t = (low+high)/2; \
177a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
178a30f8f8cSSatish Balay       else              low  = t; \
179a30f8f8cSSatish Balay     } \
180a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
181a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
182a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
183a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
184a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
185a30f8f8cSSatish Balay         else                    *bap  = value;  \
186a30f8f8cSSatish Balay         goto b_noinsert; \
187a30f8f8cSSatish Balay       } \
188a30f8f8cSSatish Balay     } \
189a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
190d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
191fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
192a30f8f8cSSatish Balay     N = nrow++ - 1;  \
193a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
194a30f8f8cSSatish Balay     for (ii=N; ii>=_i; ii--) { \
195a30f8f8cSSatish Balay       rp[ii+1] = rp[ii]; \
196a30f8f8cSSatish Balay       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
197a30f8f8cSSatish Balay     } \
198a30f8f8cSSatish Balay     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
199a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
200a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
201e56f5c9eSBarry Smith     B->nonzerostate++;\
202a30f8f8cSSatish Balay b_noinsert:; \
203a30f8f8cSSatish Balay     bilen[brow] = nrow; \
204a30f8f8cSSatish Balay   }
205a30f8f8cSSatish Balay 
206a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
207a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
208a30f8f8cSSatish Balay */
209dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
210a30f8f8cSSatish Balay {
211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
212a30f8f8cSSatish Balay   MatScalar      value;
213ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
2151302d50aSBarry Smith   PetscInt       i,j,row,col;
216d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
217d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
218d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay   /* Some Variables required in the macro */
221a30f8f8cSSatish Balay   Mat          A     = baij->A;
222a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2231302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
224a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
225a30f8f8cSSatish Balay 
226a30f8f8cSSatish Balay   Mat         B     = baij->B;
227a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2281302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
229a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
230a30f8f8cSSatish Balay 
2311302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2321302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
233a30f8f8cSSatish Balay   MatScalar *ap,*bap;
234a30f8f8cSSatish Balay 
235a30f8f8cSSatish Balay   /* for stash */
2360298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2370298fd71SBarry Smith   MatScalar *v_loc = NULL;
238a30f8f8cSSatish Balay 
239a30f8f8cSSatish Balay   PetscFunctionBegin;
240a30f8f8cSSatish Balay   if (!baij->donotstash) {
24159ffdab8SBarry Smith     if (n > baij->n_loc) {
24259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
244785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
245785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
24626fbe8dcSKarl Rupp 
24759ffdab8SBarry Smith       baij->n_loc = n;
24859ffdab8SBarry Smith     }
24959ffdab8SBarry Smith     in_loc = baij->in_loc;
25059ffdab8SBarry Smith     v_loc  = baij->v_loc;
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
254a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
256e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
257a30f8f8cSSatish Balay #endif
258a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
259a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
260a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
26201b2bd88SHong Zhang           if (a->ignore_ltriangular) {
26301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26426fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
26501b2bd88SHong Zhang         }
266a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
267a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
268a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
269a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
270db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
271db4deed7SKarl Rupp           else             value = v[i+j*m];
272d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
273a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
274a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
276cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
277a30f8f8cSSatish Balay #endif
278a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
279a30f8f8cSSatish Balay           if (mat->was_assembled) {
280a30f8f8cSSatish Balay             if (!baij->colmap) {
281ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
282a30f8f8cSSatish Balay             }
283a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
284a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28571730473SSatish Balay             col  = col - 1;
286a30f8f8cSSatish Balay #else
28771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
288a30f8f8cSSatish Balay #endif
289a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
290ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
291a30f8f8cSSatish Balay               col  =  in[j];
292a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
293a30f8f8cSSatish Balay               B    = baij->B;
294a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
295a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
296a30f8f8cSSatish Balay               ba   = b->a;
29771730473SSatish Balay             } else col += in[j]%bs;
298a30f8f8cSSatish Balay           } else col = in[j];
299db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
300db4deed7SKarl Rupp           else             value = v[i+j*m];
301d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
302a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
303a30f8f8cSSatish Balay         }
304a30f8f8cSSatish Balay       }
305a30f8f8cSSatish Balay     } else {  /* off processor entry */
3064cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
307a30f8f8cSSatish Balay       if (!baij->donotstash) {
3085080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
309a30f8f8cSSatish Balay         n_loc          = 0;
310a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
311f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
312a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
313a30f8f8cSSatish Balay           if (roworiented) {
314a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
315a30f8f8cSSatish Balay           } else {
316a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
317a30f8f8cSSatish Balay           }
318a30f8f8cSSatish Balay           n_loc++;
319a30f8f8cSSatish Balay         }
320b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
321a30f8f8cSSatish Balay       }
322a30f8f8cSSatish Balay     }
323a30f8f8cSSatish Balay   }
324a30f8f8cSSatish Balay   PetscFunctionReturn(0);
325a30f8f8cSSatish Balay }
326a30f8f8cSSatish Balay 
32736bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
32836bd2089SBarry Smith {
32936bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
33036bd2089SBarry Smith   PetscErrorCode    ierr;
33136bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
33236bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
33336bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
33436bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
33536bd2089SBarry Smith   const PetscScalar *value     = v;
33636bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
33736bd2089SBarry Smith 
33836bd2089SBarry Smith   PetscFunctionBegin;
33936bd2089SBarry Smith   if (col < row) {
34036bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
34136bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
34236bd2089SBarry Smith   }
34336bd2089SBarry Smith   rp   = aj + ai[row];
34436bd2089SBarry Smith   ap   = aa + bs2*ai[row];
34536bd2089SBarry Smith   rmax = imax[row];
34636bd2089SBarry Smith   nrow = ailen[row];
34736bd2089SBarry Smith   value = v;
34836bd2089SBarry Smith   low   = 0;
34936bd2089SBarry Smith   high  = nrow;
35036bd2089SBarry Smith 
35136bd2089SBarry Smith   while (high-low > 7) {
35236bd2089SBarry Smith     t = (low+high)/2;
35336bd2089SBarry Smith     if (rp[t] > col) high = t;
35436bd2089SBarry Smith     else             low  = t;
35536bd2089SBarry Smith   }
35636bd2089SBarry Smith   for (i=low; i<high; i++) {
35736bd2089SBarry Smith     if (rp[i] > col) break;
35836bd2089SBarry Smith     if (rp[i] == col) {
35936bd2089SBarry Smith       bap = ap +  bs2*i;
36036bd2089SBarry Smith       if (roworiented) {
36136bd2089SBarry Smith         if (is == ADD_VALUES) {
36236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
36336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
36436bd2089SBarry Smith               bap[jj] += *value++;
36536bd2089SBarry Smith             }
36636bd2089SBarry Smith           }
36736bd2089SBarry Smith         } else {
36836bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
36936bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37036bd2089SBarry Smith               bap[jj] = *value++;
37136bd2089SBarry Smith             }
37236bd2089SBarry Smith           }
37336bd2089SBarry Smith         }
37436bd2089SBarry Smith       } else {
37536bd2089SBarry Smith         if (is == ADD_VALUES) {
37636bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
37836bd2089SBarry Smith               *bap++ += *value++;
37936bd2089SBarry Smith             }
38036bd2089SBarry Smith           }
38136bd2089SBarry Smith         } else {
38236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38336bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
38436bd2089SBarry Smith               *bap++  = *value++;
38536bd2089SBarry Smith             }
38636bd2089SBarry Smith           }
38736bd2089SBarry Smith         }
38836bd2089SBarry Smith       }
38936bd2089SBarry Smith       goto noinsert2;
39036bd2089SBarry Smith     }
39136bd2089SBarry Smith   }
39236bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
39336bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
39436bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
39536bd2089SBarry Smith   N = nrow++ - 1; high++;
39636bd2089SBarry Smith   /* shift up all the later entries in this row */
39736bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
39836bd2089SBarry Smith     rp[ii+1] = rp[ii];
39936bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
40036bd2089SBarry Smith   }
40136bd2089SBarry Smith   if (N >= i) {
40236bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
40336bd2089SBarry Smith   }
40436bd2089SBarry Smith   rp[i] = col;
40536bd2089SBarry Smith   bap   = ap +  bs2*i;
40636bd2089SBarry Smith   if (roworiented) {
40736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
40836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
40936bd2089SBarry Smith         bap[jj] = *value++;
41036bd2089SBarry Smith       }
41136bd2089SBarry Smith     }
41236bd2089SBarry Smith   } else {
41336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
41536bd2089SBarry Smith         *bap++ = *value++;
41636bd2089SBarry Smith       }
41736bd2089SBarry Smith     }
41836bd2089SBarry Smith   }
41936bd2089SBarry Smith   noinsert2:;
42036bd2089SBarry Smith   ailen[row] = nrow;
42136bd2089SBarry Smith   PetscFunctionReturn(0);
42236bd2089SBarry Smith }
42336bd2089SBarry Smith 
42436bd2089SBarry Smith /*
42536bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
42636bd2089SBarry Smith */
42736bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
42836bd2089SBarry Smith {
42936bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43036bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
43136bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
43236bd2089SBarry Smith   PetscErrorCode    ierr;
43336bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
43436bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
43536bd2089SBarry Smith   const PetscScalar *value     = v;
43636bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
43736bd2089SBarry Smith 
43836bd2089SBarry Smith   PetscFunctionBegin;
43936bd2089SBarry Smith   rp   = aj + ai[row];
44036bd2089SBarry Smith   ap   = aa + bs2*ai[row];
44136bd2089SBarry Smith   rmax = imax[row];
44236bd2089SBarry Smith   nrow = ailen[row];
44336bd2089SBarry Smith   low  = 0;
44436bd2089SBarry Smith   high = nrow;
44536bd2089SBarry Smith   value = v;
44636bd2089SBarry Smith   while (high-low > 7) {
44736bd2089SBarry Smith     t = (low+high)/2;
44836bd2089SBarry Smith     if (rp[t] > col) high = t;
44936bd2089SBarry Smith     else             low  = t;
45036bd2089SBarry Smith   }
45136bd2089SBarry Smith   for (i=low; i<high; i++) {
45236bd2089SBarry Smith     if (rp[i] > col) break;
45336bd2089SBarry Smith     if (rp[i] == col) {
45436bd2089SBarry Smith       bap = ap +  bs2*i;
45536bd2089SBarry Smith       if (roworiented) {
45636bd2089SBarry Smith         if (is == ADD_VALUES) {
45736bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
45836bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
45936bd2089SBarry Smith               bap[jj] += *value++;
46036bd2089SBarry Smith             }
46136bd2089SBarry Smith           }
46236bd2089SBarry Smith         } else {
46336bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46436bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46536bd2089SBarry Smith               bap[jj] = *value++;
46636bd2089SBarry Smith             }
46736bd2089SBarry Smith           }
46836bd2089SBarry Smith         }
46936bd2089SBarry Smith       } else {
47036bd2089SBarry Smith         if (is == ADD_VALUES) {
47136bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
47236bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
47336bd2089SBarry Smith               bap[jj] += value[jj];
47436bd2089SBarry Smith             }
47536bd2089SBarry Smith             bap += bs;
47636bd2089SBarry Smith           }
47736bd2089SBarry Smith         } else {
47836bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
47936bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48036bd2089SBarry Smith               bap[jj]  = value[jj];
48136bd2089SBarry Smith             }
48236bd2089SBarry Smith             bap += bs;
48336bd2089SBarry Smith           }
48436bd2089SBarry Smith         }
48536bd2089SBarry Smith       }
48636bd2089SBarry Smith       goto noinsert2;
48736bd2089SBarry Smith     }
48836bd2089SBarry Smith   }
48936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
49036bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
49136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
49236bd2089SBarry Smith   N = nrow++ - 1; high++;
49336bd2089SBarry Smith   /* shift up all the later entries in this row */
49436bd2089SBarry Smith   for (ii=N; ii>=i; ii--) {
49536bd2089SBarry Smith     rp[ii+1] = rp[ii];
49636bd2089SBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
49736bd2089SBarry Smith   }
49836bd2089SBarry Smith   if (N >= i) {
49936bd2089SBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
50036bd2089SBarry Smith   }
50136bd2089SBarry Smith   rp[i] = col;
50236bd2089SBarry Smith   bap   = ap +  bs2*i;
50336bd2089SBarry Smith   if (roworiented) {
50436bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50536bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
50636bd2089SBarry Smith         bap[jj] = *value++;
50736bd2089SBarry Smith       }
50836bd2089SBarry Smith     }
50936bd2089SBarry Smith   } else {
51036bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
51136bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
51236bd2089SBarry Smith         *bap++ = *value++;
51336bd2089SBarry Smith       }
51436bd2089SBarry Smith     }
51536bd2089SBarry Smith   }
51636bd2089SBarry Smith   noinsert2:;
51736bd2089SBarry Smith   ailen[row] = nrow;
51836bd2089SBarry Smith   PetscFunctionReturn(0);
51936bd2089SBarry Smith }
52036bd2089SBarry Smith 
52136bd2089SBarry Smith /*
52236bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
52336bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52436bd2089SBarry Smith */
525dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
526a30f8f8cSSatish Balay {
5270880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
528f15d580aSBarry Smith   const MatScalar *value;
529f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
530ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
531dfbe8321SBarry Smith   PetscErrorCode  ierr;
532899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
533899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
534d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5350880e062SHong Zhang 
536a30f8f8cSSatish Balay   PetscFunctionBegin;
5370880e062SHong Zhang   if (!barray) {
538785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5390880e062SHong Zhang     baij->barray = barray;
5400880e062SHong Zhang   }
5410880e062SHong Zhang 
5420880e062SHong Zhang   if (roworiented) {
5430880e062SHong Zhang     stepval = (n-1)*bs;
5440880e062SHong Zhang   } else {
5450880e062SHong Zhang     stepval = (m-1)*bs;
5460880e062SHong Zhang   }
5470880e062SHong Zhang   for (i=0; i<m; i++) {
5480880e062SHong Zhang     if (im[i] < 0) continue;
5492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
550bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5510880e062SHong Zhang #endif
5520880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5530880e062SHong Zhang       row = im[i] - rstart;
5540880e062SHong Zhang       for (j=0; j<n; j++) {
555f3f98c53SJed Brown         if (im[i] > in[j]) {
556f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
557e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
558f3f98c53SJed Brown         }
5590880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5600880e062SHong Zhang         if ((roworiented) && (n == 1)) {
561f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5620880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
563f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5640880e062SHong Zhang         } else { /* Here a copy is required */
5650880e062SHong Zhang           if (roworiented) {
5660880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5670880e062SHong Zhang           } else {
5680880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5690880e062SHong Zhang           }
5700880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5710880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5720880e062SHong Zhang               *barray++ = *value++;
5730880e062SHong Zhang             }
5740880e062SHong Zhang           }
5750880e062SHong Zhang           barray -=bs2;
5760880e062SHong Zhang         }
5770880e062SHong Zhang 
5780880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5790880e062SHong Zhang           col  = in[j] - cstart;
58036bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
58126fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
583bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5840880e062SHong Zhang #endif
5850880e062SHong Zhang         else {
5860880e062SHong Zhang           if (mat->was_assembled) {
5870880e062SHong Zhang             if (!baij->colmap) {
588ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5890880e062SHong Zhang             }
5900880e062SHong Zhang 
5912515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5920880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5931302d50aSBarry Smith             { PetscInt data;
5940880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
595e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5960880e062SHong Zhang             }
5970880e062SHong Zhang #else
598e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5990880e062SHong Zhang #endif
6000880e062SHong Zhang #endif
6010880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
6020880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
6030880e062SHong Zhang             col  = (col - 1)/bs;
6040880e062SHong Zhang #else
6050880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
6060880e062SHong Zhang #endif
6070880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
608ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
6090880e062SHong Zhang               col  = in[j];
6100880e062SHong Zhang             }
61126fbe8dcSKarl Rupp           } else col = in[j];
61236bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
6130880e062SHong Zhang         }
6140880e062SHong Zhang       }
6150880e062SHong Zhang     } else {
616bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6170880e062SHong Zhang       if (!baij->donotstash) {
6180880e062SHong Zhang         if (roworiented) {
6190880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6200880e062SHong Zhang         } else {
6210880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6220880e062SHong Zhang         }
6230880e062SHong Zhang       }
6240880e062SHong Zhang     }
6250880e062SHong Zhang   }
6260880e062SHong Zhang   PetscFunctionReturn(0);
627a30f8f8cSSatish Balay }
628a30f8f8cSSatish Balay 
6291302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
630a30f8f8cSSatish Balay {
631f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6326849ba73SBarry Smith   PetscErrorCode ierr;
633d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
634d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
635a30f8f8cSSatish Balay 
636a30f8f8cSSatish Balay   PetscFunctionBegin;
637a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
638e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
639e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
640a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
641a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
642a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
643e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
644e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
645a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
646a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
647c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
648a30f8f8cSSatish Balay         } else {
649a30f8f8cSSatish Balay           if (!baij->colmap) {
650ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
651a30f8f8cSSatish Balay           }
652a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
653a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
654a30f8f8cSSatish Balay           data--;
655a30f8f8cSSatish Balay #else
656a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
657a30f8f8cSSatish Balay #endif
658a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
659a30f8f8cSSatish Balay           else {
660a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
661e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
662a30f8f8cSSatish Balay           }
663a30f8f8cSSatish Balay         }
664a30f8f8cSSatish Balay       }
665f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
666a30f8f8cSSatish Balay   }
667a30f8f8cSSatish Balay   PetscFunctionReturn(0);
668a30f8f8cSSatish Balay }
669a30f8f8cSSatish Balay 
670dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
671a30f8f8cSSatish Balay {
672a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
673dfbe8321SBarry Smith   PetscErrorCode ierr;
674a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay   PetscFunctionBegin;
677a30f8f8cSSatish Balay   if (baij->size == 1) {
678a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
679a30f8f8cSSatish Balay   } else {
680a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
681785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
682a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
683a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
684a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
685a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
686b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6878f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
688a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6890b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6900b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6910b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6920b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
693899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
694d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6950b8dc8d2SHong Zhang       MatScalar    *v;
6960b8dc8d2SHong Zhang 
697dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
698d0f46423SBarry Smith       ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6990b8dc8d2SHong Zhang       /* Amat */
7000b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
7010b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7020b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7030b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
7040b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7050b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
7060b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7070b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7080b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7090b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7100b8dc8d2SHong Zhang               /* non-diagonal block */
7110b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7120b8dc8d2SHong Zhang             }
7130b8dc8d2SHong Zhang           }
7140b8dc8d2SHong Zhang         }
71551f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7160b8dc8d2SHong Zhang       }
7170b8dc8d2SHong Zhang       /* Bmat */
7180b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7190b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7200b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7210b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7220b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7230b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7240b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7250b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7260b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7270b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7280b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7290b8dc8d2SHong Zhang             }
7300b8dc8d2SHong Zhang           }
7310b8dc8d2SHong Zhang         }
73251f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7330b8dc8d2SHong Zhang       }
734b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7350b8dc8d2SHong Zhang       *norm = 0.0;
736d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7370b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7380b8dc8d2SHong Zhang       }
73974ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
740f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
741a30f8f8cSSatish Balay   }
742a30f8f8cSSatish Balay   PetscFunctionReturn(0);
743a30f8f8cSSatish Balay }
744a30f8f8cSSatish Balay 
745dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
746a30f8f8cSSatish Balay {
747a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
748dfbe8321SBarry Smith   PetscErrorCode ierr;
7491302d50aSBarry Smith   PetscInt       nstash,reallocs;
750a30f8f8cSSatish Balay 
751a30f8f8cSSatish Balay   PetscFunctionBegin;
75226fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
753a30f8f8cSSatish Balay 
754d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7551e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
756a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7571e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
758a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7591e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   PetscFunctionReturn(0);
761a30f8f8cSSatish Balay }
762a30f8f8cSSatish Balay 
763dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
764a30f8f8cSSatish Balay {
765a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
766a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7676849ba73SBarry Smith   PetscErrorCode ierr;
76813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
769e44c0bd4SBarry Smith   PetscInt       *row,*col;
770ace3abfcSBarry Smith   PetscBool      other_disassembled;
77113f74950SBarry Smith   PetscMPIInt    n;
772ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
773a30f8f8cSSatish Balay   MatScalar      *val;
774a30f8f8cSSatish Balay 
77591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
776a30f8f8cSSatish Balay   PetscFunctionBegin;
7774cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
778a30f8f8cSSatish Balay     while (1) {
779a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
780a30f8f8cSSatish Balay       if (!flg) break;
781a30f8f8cSSatish Balay 
782a30f8f8cSSatish Balay       for (i=0; i<n;) {
783a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
78426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
78526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
78626fbe8dcSKarl Rupp         }
787a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
788a30f8f8cSSatish Balay         else       ncols = n-i;
789a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7904b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
791a30f8f8cSSatish Balay         i    = j;
792a30f8f8cSSatish Balay       }
793a30f8f8cSSatish Balay     }
794a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
795a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
796a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
797a30f8f8cSSatish Balay        restore the original flags */
798a30f8f8cSSatish Balay     r1 = baij->roworiented;
799a30f8f8cSSatish Balay     r2 = a->roworiented;
80091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
80126fbe8dcSKarl Rupp 
802a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
803a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
80426fbe8dcSKarl Rupp 
80591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
806a30f8f8cSSatish Balay     while (1) {
807a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
808a30f8f8cSSatish Balay       if (!flg) break;
809a30f8f8cSSatish Balay 
810a30f8f8cSSatish Balay       for (i=0; i<n;) {
811a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
81226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
81326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81426fbe8dcSKarl Rupp         }
815a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
816a30f8f8cSSatish Balay         else       ncols = n-i;
8174b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
818a30f8f8cSSatish Balay         i    = j;
819a30f8f8cSSatish Balay       }
820a30f8f8cSSatish Balay     }
821a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
82226fbe8dcSKarl Rupp 
823a30f8f8cSSatish Balay     baij->roworiented = r1;
824a30f8f8cSSatish Balay     a->roworiented    = r2;
82526fbe8dcSKarl Rupp 
82691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
827a30f8f8cSSatish Balay   }
828a30f8f8cSSatish Balay 
829a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
830a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
831a30f8f8cSSatish Balay 
832a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
833a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
834a30f8f8cSSatish Balay   /*
835a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
836a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
837a30f8f8cSSatish Balay   */
838a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
839b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
840a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
841ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
842a30f8f8cSSatish Balay     }
843a30f8f8cSSatish Balay   }
844a30f8f8cSSatish Balay 
845a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
84640781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
847a30f8f8cSSatish Balay   }
848a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
849a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
850a30f8f8cSSatish Balay 
85174ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
85226fbe8dcSKarl Rupp 
853a30f8f8cSSatish Balay   baij->rowvalues = 0;
8544f9cfa9eSBarry Smith 
8554f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8564f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
857e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
858b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
859e56f5c9eSBarry Smith   }
860a30f8f8cSSatish Balay   PetscFunctionReturn(0);
861a30f8f8cSSatish Balay }
862a30f8f8cSSatish Balay 
863dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8649804daf3SBarry Smith #include <petscdraw.h>
8656849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
866a30f8f8cSSatish Balay {
867a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
868dfbe8321SBarry Smith   PetscErrorCode    ierr;
869d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8707da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
871ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
872b0a32e0cSBarry Smith   PetscViewer       sviewer;
873f3ef73ceSBarry Smith   PetscViewerFormat format;
874a30f8f8cSSatish Balay 
875a30f8f8cSSatish Balay   PetscFunctionBegin;
876251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
877251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
87832077d6dSBarry Smith   if (iascii) {
879b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
880456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
881a30f8f8cSSatish Balay       MatInfo info;
882ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
883a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8841575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
885b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
886a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
887e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
888a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
889e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
890b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8911575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
89207d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
893a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
894a30f8f8cSSatish Balay       PetscFunctionReturn(0);
895fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
89677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
897a30f8f8cSSatish Balay       PetscFunctionReturn(0);
898c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
899c1490034SHong Zhang       PetscFunctionReturn(0);
900a30f8f8cSSatish Balay     }
901a30f8f8cSSatish Balay   }
902a30f8f8cSSatish Balay 
903a30f8f8cSSatish Balay   if (isdraw) {
904b0a32e0cSBarry Smith     PetscDraw draw;
905ace3abfcSBarry Smith     PetscBool isnull;
906b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
90745f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
90845f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
909a30f8f8cSSatish Balay   }
910a30f8f8cSSatish Balay 
9117da1fb6eSBarry Smith   {
912a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
913a30f8f8cSSatish Balay     Mat          A;
91465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
91565d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
916d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
917a30f8f8cSSatish Balay     MatScalar    *a;
9183e219373SBarry Smith     const char   *matname;
919a30f8f8cSSatish Balay 
920f204ca49SKris Buschelman     /* Should this be the same type as mat? */
921ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
922a30f8f8cSSatish Balay     if (!rank) {
923f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
924a30f8f8cSSatish Balay     } else {
925f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
926a30f8f8cSSatish Balay     }
927f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9280298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9292b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9303bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
931a30f8f8cSSatish Balay 
932a30f8f8cSSatish Balay     /* copy over the A part */
93365d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
934a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
935785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
936a30f8f8cSSatish Balay 
937a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
938e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
93926fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
940a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
941e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
942a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
943dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94426fbe8dcSKarl Rupp           col++;
94526fbe8dcSKarl Rupp           a += bs;
946a30f8f8cSSatish Balay         }
947a30f8f8cSSatish Balay       }
948a30f8f8cSSatish Balay     }
949a30f8f8cSSatish Balay     /* copy over the B part */
95065d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
95165d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
952a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
953e9f7bc9eSHong Zhang 
954e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
95526fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
956a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
957a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
958a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
959799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
96026fbe8dcSKarl Rupp           col++;
96126fbe8dcSKarl Rupp           a += bs;
962a30f8f8cSSatish Balay         }
963a30f8f8cSSatish Balay       }
964a30f8f8cSSatish Balay     }
965a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
966a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
967a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
968a30f8f8cSSatish Balay     /*
969a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
970b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
971a30f8f8cSSatish Balay     */
9723f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
973ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9743e219373SBarry Smith     if (!rank) {
975ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
976383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
977a30f8f8cSSatish Balay     }
9783f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9791575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9806bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
981a30f8f8cSSatish Balay   }
982a30f8f8cSSatish Balay   PetscFunctionReturn(0);
983a30f8f8cSSatish Balay }
984a30f8f8cSSatish Balay 
985d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer)
986d1654148SHong Zhang {
987d1654148SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
988d1654148SHong Zhang   Mat_SeqSBAIJ   *A = (Mat_SeqSBAIJ*)a->A->data;
989d1654148SHong Zhang   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
990d1654148SHong Zhang   PetscErrorCode ierr;
991d1654148SHong Zhang   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
992d1654148SHong Zhang   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
993d1654148SHong Zhang   int            fd;
994d1654148SHong Zhang   PetscScalar    *column_values;
995d1654148SHong Zhang   FILE           *file;
996d1654148SHong Zhang   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
997d1654148SHong Zhang   PetscInt       message_count,flowcontrolcount;
998d1654148SHong Zhang 
999d1654148SHong Zhang   PetscFunctionBegin;
1000d1654148SHong Zhang   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1001d1654148SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
1002d1654148SHong Zhang   nz   = bs2*(A->nz + B->nz);
1003d1654148SHong Zhang   rlen = mat->rmap->n;
1004d1654148SHong Zhang   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1005d1654148SHong Zhang   if (!rank) {
1006d1654148SHong Zhang     header[0] = MAT_FILE_CLASSID;
1007d1654148SHong Zhang     header[1] = mat->rmap->N;
1008d1654148SHong Zhang     header[2] = mat->cmap->N;
1009d1654148SHong Zhang 
1010d1654148SHong Zhang     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1011d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1012d1654148SHong Zhang     /* get largest number of rows any processor has */
1013d1654148SHong Zhang     range = mat->rmap->range;
1014d1654148SHong Zhang     for (i=1; i<size; i++) {
1015d1654148SHong Zhang       rlen = PetscMax(rlen,range[i+1] - range[i]);
1016d1654148SHong Zhang     }
1017d1654148SHong Zhang   } else {
1018d1654148SHong Zhang     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1019d1654148SHong Zhang   }
1020d1654148SHong Zhang 
1021d1654148SHong Zhang   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
1022d1654148SHong Zhang   /* compute lengths of each row  */
1023d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1024d1654148SHong Zhang     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1025d1654148SHong Zhang   }
1026d1654148SHong Zhang   /* store the row lengths to the file */
1027d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1028d1654148SHong Zhang   if (!rank) {
1029d1654148SHong Zhang     MPI_Status status;
1030d1654148SHong Zhang     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1031d1654148SHong Zhang     rlen = (range[1] - range[0])/bs;
1032d1654148SHong Zhang     for (i=0; i<rlen; i++) {
1033d1654148SHong Zhang       for (j=0; j<bs; j++) {
1034d1654148SHong Zhang         row_lens[i*bs+j] = bs*crow_lens[i];
1035d1654148SHong Zhang       }
1036d1654148SHong Zhang     }
1037d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1038d1654148SHong Zhang     for (i=1; i<size; i++) {
1039d1654148SHong Zhang       rlen = (range[i+1] - range[i])/bs;
1040d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1041d1654148SHong Zhang       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1042d1654148SHong Zhang       for (k=0; k<rlen; k++) {
1043d1654148SHong Zhang         for (j=0; j<bs; j++) {
1044d1654148SHong Zhang           row_lens[k*bs+j] = bs*crow_lens[k];
1045d1654148SHong Zhang         }
1046d1654148SHong Zhang       }
1047d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1048d1654148SHong Zhang     }
1049d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1050d1654148SHong Zhang     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1051d1654148SHong Zhang   } else {
1052d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1053d1654148SHong Zhang     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1054d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1055d1654148SHong Zhang   }
1056d1654148SHong Zhang   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1057d1654148SHong Zhang 
1058d1654148SHong Zhang   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1059d1654148SHong Zhang      information needed to make it for each row from a block row. This does require more communication but still not more than
1060d1654148SHong Zhang      the communication needed for the nonzero values  */
1061d1654148SHong Zhang   nzmax = nz; /*  space a largest processor needs */
1062d1654148SHong Zhang   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1063d1654148SHong Zhang   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1064d1654148SHong Zhang   cnt   = 0;
1065d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1066d1654148SHong Zhang     pcnt = cnt;
1067d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1068d1654148SHong Zhang       if ((col = garray[B->j[j]]) > cstart) break;
1069d1654148SHong Zhang       for (l=0; l<bs; l++) {
1070d1654148SHong Zhang         column_indices[cnt++] = bs*col+l;
1071d1654148SHong Zhang       }
1072d1654148SHong Zhang     }
1073d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1074d1654148SHong Zhang       for (l=0; l<bs; l++) {
1075d1654148SHong Zhang         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1076d1654148SHong Zhang       }
1077d1654148SHong Zhang     }
1078d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1079d1654148SHong Zhang       for (l=0; l<bs; l++) {
1080d1654148SHong Zhang         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1081d1654148SHong Zhang       }
1082d1654148SHong Zhang     }
1083d1654148SHong Zhang     len = cnt - pcnt;
1084d1654148SHong Zhang     for (k=1; k<bs; k++) {
1085d1654148SHong Zhang       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1086d1654148SHong Zhang       cnt += len;
1087d1654148SHong Zhang     }
1088d1654148SHong Zhang   }
1089d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1090d1654148SHong Zhang 
1091d1654148SHong Zhang   /* store the columns to the file */
1092d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1093d1654148SHong Zhang   if (!rank) {
1094d1654148SHong Zhang     MPI_Status status;
1095d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1096d1654148SHong Zhang     for (i=1; i<size; i++) {
1097d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1098d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1099d1654148SHong Zhang       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1100d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1101d1654148SHong Zhang     }
1102d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1103d1654148SHong Zhang   } else {
1104d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1105d1654148SHong Zhang     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1106d1654148SHong Zhang     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1107d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1108d1654148SHong Zhang   }
1109d1654148SHong Zhang   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1110d1654148SHong Zhang 
1111d1654148SHong Zhang   /* load up the numerical values */
1112d1654148SHong Zhang   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1113d1654148SHong Zhang   cnt  = 0;
1114d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1115d1654148SHong Zhang     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1116d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1117d1654148SHong Zhang       if (garray[B->j[j]] > cstart) break;
1118d1654148SHong Zhang       for (l=0; l<bs; l++) {
1119d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1120d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1121d1654148SHong Zhang         }
1122d1654148SHong Zhang       }
1123d1654148SHong Zhang       cnt += bs;
1124d1654148SHong Zhang     }
1125d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1126d1654148SHong Zhang       for (l=0; l<bs; l++) {
1127d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1128d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1129d1654148SHong Zhang         }
1130d1654148SHong Zhang       }
1131d1654148SHong Zhang       cnt += bs;
1132d1654148SHong Zhang     }
1133d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1134d1654148SHong Zhang       for (l=0; l<bs; l++) {
1135d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1136d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1137d1654148SHong Zhang         }
1138d1654148SHong Zhang       }
1139d1654148SHong Zhang       cnt += bs;
1140d1654148SHong Zhang     }
1141d1654148SHong Zhang     cnt += (bs-1)*rlen;
1142d1654148SHong Zhang   }
1143d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1144d1654148SHong Zhang 
1145d1654148SHong Zhang   /* store the column values to the file */
1146d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1147d1654148SHong Zhang   if (!rank) {
1148d1654148SHong Zhang     MPI_Status status;
1149d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1150d1654148SHong Zhang     for (i=1; i<size; i++) {
1151d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1152d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1153d1654148SHong Zhang       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1154d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1155d1654148SHong Zhang     }
1156d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1157d1654148SHong Zhang   } else {
1158d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1159d1654148SHong Zhang     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1160d1654148SHong Zhang     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1161d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1162d1654148SHong Zhang   }
1163d1654148SHong Zhang   ierr = PetscFree(column_values);CHKERRQ(ierr);
1164d1654148SHong Zhang 
1165d1654148SHong Zhang   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1166d1654148SHong Zhang   if (file) {
1167d1654148SHong Zhang     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1168d1654148SHong Zhang   }
1169d1654148SHong Zhang   PetscFunctionReturn(0);
1170d1654148SHong Zhang }
1171d1654148SHong Zhang 
1172dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
1173a30f8f8cSSatish Balay {
1174dfbe8321SBarry Smith   PetscErrorCode ierr;
1175ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
1176a30f8f8cSSatish Balay 
1177a30f8f8cSSatish Balay   PetscFunctionBegin;
1178251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1179251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1180251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1181251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1182d1654148SHong Zhang   if (iascii || isdraw || issocket) {
1183a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1184d1654148SHong Zhang   } else if (isbinary) {
1185d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1186a30f8f8cSSatish Balay   }
1187a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1188a30f8f8cSSatish Balay }
1189a30f8f8cSSatish Balay 
1190dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1191a30f8f8cSSatish Balay {
1192a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1193dfbe8321SBarry Smith   PetscErrorCode ierr;
1194a30f8f8cSSatish Balay 
1195a30f8f8cSSatish Balay   PetscFunctionBegin;
1196a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1197d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1198a30f8f8cSSatish Balay #endif
1199a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1200a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12016bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12026bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1203a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
12046bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1205a30f8f8cSSatish Balay #else
120605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1207a30f8f8cSSatish Balay #endif
120805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12096bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12106bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
12116bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
12126bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
12136bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
12146bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
12156bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
12166bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
12175755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
121805b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
121905b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12206bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
12216bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
12226bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1223ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
122405b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1225a30f8f8cSSatish Balay #endif
122659ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
122759ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1228899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1229bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1230901853e0SKris Buschelman 
1231dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1232bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1233bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1234bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
12356214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
12366214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
12376214f412SHong Zhang #endif
1238b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1239b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1240a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1241a30f8f8cSSatish Balay }
1242a30f8f8cSSatish Balay 
1243547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1244547795f9SHong Zhang {
1245547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1246547795f9SHong Zhang   PetscErrorCode    ierr;
1247547795f9SHong Zhang   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
12486de40e93SBarry Smith   PetscScalar       *from;
12496de40e93SBarry Smith   const PetscScalar *x;
1250547795f9SHong Zhang 
1251547795f9SHong Zhang   PetscFunctionBegin;
1252547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1253e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1254547795f9SHong Zhang 
1255547795f9SHong Zhang   /* diagonal part */
1256547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1257547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1258547795f9SHong Zhang 
1259547795f9SHong Zhang   /* subdiagonal part */
1260547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1261547795f9SHong Zhang 
1262547795f9SHong Zhang   /* copy x into the vec slvec0 */
1263547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
12646de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1265547795f9SHong Zhang 
1266547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1267547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
12686de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1269547795f9SHong Zhang 
1270547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1271547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1272547795f9SHong Zhang   /* supperdiagonal part */
1273547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1274547795f9SHong Zhang   PetscFunctionReturn(0);
1275547795f9SHong Zhang }
1276547795f9SHong Zhang 
1277dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1278a9d4b620SHong Zhang {
1279a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1280dfbe8321SBarry Smith   PetscErrorCode    ierr;
1281d0f46423SBarry Smith   PetscInt          nt,mbs=a->mbs,bs=A->rmap->bs;
1282d9ca1df4SBarry Smith   PetscScalar       *from;
1283d9ca1df4SBarry Smith   const PetscScalar *x;
1284a9d4b620SHong Zhang 
1285a9d4b620SHong Zhang   PetscFunctionBegin;
1286a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1287e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1288a9d4b620SHong Zhang 
1289a9d4b620SHong Zhang   /* diagonal part */
1290a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1291fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1292a9d4b620SHong Zhang 
1293a9d4b620SHong Zhang   /* subdiagonal part */
1294a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1295fc165ae2SBarry Smith 
1296a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12971ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1298d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1299a9d4b620SHong Zhang 
1300fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1301fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1302d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1303fc165ae2SBarry Smith 
1304fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1305ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1306a9d4b620SHong Zhang   /* supperdiagonal part */
1307a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1308a9d4b620SHong Zhang   PetscFunctionReturn(0);
1309a9d4b620SHong Zhang }
1310a9d4b620SHong Zhang 
1311dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1312a30f8f8cSSatish Balay {
1313a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1314dfbe8321SBarry Smith   PetscErrorCode ierr;
13151302d50aSBarry Smith   PetscInt       nt;
1316a30f8f8cSSatish Balay 
1317a30f8f8cSSatish Balay   PetscFunctionBegin;
1318a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1319e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1320e7e72b3dSBarry Smith 
1321a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1322e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
132365d70643SHong Zhang 
1324ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1325b941877fSHong Zhang   /* do diagonal part */
1326b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1327b941877fSHong Zhang   /* do supperdiagonal part */
1328ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1329b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1330b941877fSHong Zhang   /* do subdiagonal part */
1331b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1332ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1333ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1334a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1335a30f8f8cSSatish Balay }
1336a30f8f8cSSatish Balay 
1337dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1338a30f8f8cSSatish Balay {
1339de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1340dfbe8321SBarry Smith   PetscErrorCode    ierr;
1341d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1342d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1343d9ca1df4SBarry Smith   const PetscScalar *x;
1344a9d4b620SHong Zhang 
1345a9d4b620SHong Zhang   PetscFunctionBegin;
1346a9d4b620SHong Zhang   /*
1347ce94432eSBarry Smith   PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n");
13480ec8b6e3SBarry Smith   PetscSynchronizedFlush(PetscObjectComm((PetscObject)A),PETSC_STDOUT);
1349a9d4b620SHong Zhang   */
1350a9d4b620SHong Zhang   /* diagonal part */
1351a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
13522dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1353a9d4b620SHong Zhang 
1354a9d4b620SHong Zhang   /* subdiagonal part */
1355a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1356a9d4b620SHong Zhang 
1357a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
13581ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1359d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1360a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
13611ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1362a9d4b620SHong Zhang 
1363ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1364d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1365ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1366a9d4b620SHong Zhang 
1367a9d4b620SHong Zhang   /* supperdiagonal part */
1368a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1369a9d4b620SHong Zhang   PetscFunctionReturn(0);
1370a9d4b620SHong Zhang }
1371a9d4b620SHong Zhang 
1372dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1373a9d4b620SHong Zhang {
1374a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1375dfbe8321SBarry Smith   PetscErrorCode ierr;
1376a30f8f8cSSatish Balay 
1377a30f8f8cSSatish Balay   PetscFunctionBegin;
1378ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1379b941877fSHong Zhang   /* do diagonal part */
1380b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1381b941877fSHong Zhang   /* do supperdiagonal part */
1382ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1383de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1384de8b6608SHong Zhang 
1385b941877fSHong Zhang   /* do subdiagonal part */
1386a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1387ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1388ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1389a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1390a30f8f8cSSatish Balay }
1391a30f8f8cSSatish Balay 
1392a30f8f8cSSatish Balay /*
1393a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1394a30f8f8cSSatish Balay    diagonal block
1395a30f8f8cSSatish Balay */
1396dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1397a30f8f8cSSatish Balay {
1398a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1399dfbe8321SBarry Smith   PetscErrorCode ierr;
1400a30f8f8cSSatish Balay 
1401a30f8f8cSSatish Balay   PetscFunctionBegin;
1402e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1403a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1404a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1405a30f8f8cSSatish Balay }
1406a30f8f8cSSatish Balay 
1407f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1408a30f8f8cSSatish Balay {
1409a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1410dfbe8321SBarry Smith   PetscErrorCode ierr;
1411a30f8f8cSSatish Balay 
1412a30f8f8cSSatish Balay   PetscFunctionBegin;
1413f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1414f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1415a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1416a30f8f8cSSatish Balay }
1417a30f8f8cSSatish Balay 
14181302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1419a30f8f8cSSatish Balay {
1420d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1421d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1422d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1423d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1424d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1425899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1426d0d4cfc2SHong Zhang 
1427a30f8f8cSSatish Balay   PetscFunctionBegin;
1428e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1429d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1430d0d4cfc2SHong Zhang 
1431d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1432d0d4cfc2SHong Zhang     /*
1433d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1434d0d4cfc2SHong Zhang     */
1435d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1436d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1437d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1438d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1439d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
144026fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1441d0d4cfc2SHong Zhang     }
1442dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1443d0d4cfc2SHong Zhang   }
1444d0d4cfc2SHong Zhang 
1445e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1446d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1447d0d4cfc2SHong Zhang 
1448d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1449d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1450d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1451d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1452d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1453d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1454d0d4cfc2SHong Zhang 
1455d0d4cfc2SHong Zhang   cmap = mat->garray;
1456d0d4cfc2SHong Zhang   if (v  || idx) {
1457d0d4cfc2SHong Zhang     if (nztot) {
1458d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1459d0d4cfc2SHong Zhang       PetscInt imark = -1;
1460d0d4cfc2SHong Zhang       if (v) {
1461d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1462d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1463d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1464d0d4cfc2SHong Zhang           else break;
1465d0d4cfc2SHong Zhang         }
1466d0d4cfc2SHong Zhang         imark = i;
1467d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1468d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1469d0d4cfc2SHong Zhang       }
1470d0d4cfc2SHong Zhang       if (idx) {
1471d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1472d0d4cfc2SHong Zhang         if (imark > -1) {
1473d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1474d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1475d0d4cfc2SHong Zhang           }
1476d0d4cfc2SHong Zhang         } else {
1477d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
147826fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1479d0d4cfc2SHong Zhang             else break;
1480d0d4cfc2SHong Zhang           }
1481d0d4cfc2SHong Zhang           imark = i;
1482d0d4cfc2SHong Zhang         }
1483d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1484d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1485d0d4cfc2SHong Zhang       }
1486d0d4cfc2SHong Zhang     } else {
1487d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1488d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1489d0d4cfc2SHong Zhang     }
1490d0d4cfc2SHong Zhang   }
1491d0d4cfc2SHong Zhang   *nz  = nztot;
1492d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1493d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1494a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1495a30f8f8cSSatish Balay }
1496a30f8f8cSSatish Balay 
14971302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1498a30f8f8cSSatish Balay {
1499a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1500a30f8f8cSSatish Balay 
1501a30f8f8cSSatish Balay   PetscFunctionBegin;
1502e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1503a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1504a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1505a30f8f8cSSatish Balay }
1506a30f8f8cSSatish Balay 
1507d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1508d0d4cfc2SHong Zhang {
1509d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1510d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1511d0d4cfc2SHong Zhang 
1512d0d4cfc2SHong Zhang   PetscFunctionBegin;
1513d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1514d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1515d0d4cfc2SHong Zhang }
1516d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1517d0d4cfc2SHong Zhang {
1518d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1519d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1520d0d4cfc2SHong Zhang 
1521d0d4cfc2SHong Zhang   PetscFunctionBegin;
1522d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1523d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1524d0d4cfc2SHong Zhang }
1525d0d4cfc2SHong Zhang 
152699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
152799cafbc1SBarry Smith {
152899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
152999cafbc1SBarry Smith   PetscErrorCode ierr;
153099cafbc1SBarry Smith 
153199cafbc1SBarry Smith   PetscFunctionBegin;
153299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
153399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
153499cafbc1SBarry Smith   PetscFunctionReturn(0);
153599cafbc1SBarry Smith }
153699cafbc1SBarry Smith 
153799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
153899cafbc1SBarry Smith {
153999cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
154099cafbc1SBarry Smith   PetscErrorCode ierr;
154199cafbc1SBarry Smith 
154299cafbc1SBarry Smith   PetscFunctionBegin;
154399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
154499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
154599cafbc1SBarry Smith   PetscFunctionReturn(0);
154699cafbc1SBarry Smith }
154799cafbc1SBarry Smith 
15487dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
154936032a97SHong Zhang    Input: isrow       - distributed(parallel),
155036032a97SHong Zhang           iscol_local - locally owned (seq)
155136032a97SHong Zhang */
155236032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
15538f46ffcaSHong Zhang {
15548f46ffcaSHong Zhang   PetscErrorCode ierr;
15558f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
15568f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
155736032a97SHong Zhang 
155836032a97SHong Zhang   PetscFunctionBegin;
15598f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
15608f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
15611098a8e8SHong Zhang   if (sz1 > sz2) {
15621098a8e8SHong Zhang     *flg = PETSC_FALSE;
15631098a8e8SHong Zhang     PetscFunctionReturn(0);
15641098a8e8SHong Zhang   }
15658f46ffcaSHong Zhang 
15668f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
15678f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15688f46ffcaSHong Zhang 
15698f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
15708f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
15718f46ffcaSHong Zhang   ierr = PetscMemcpy(a1,ptr1,sz1*sizeof(PetscInt));CHKERRQ(ierr);
15728f46ffcaSHong Zhang   ierr = PetscMemcpy(a2,ptr2,sz2*sizeof(PetscInt));CHKERRQ(ierr);
15738f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
15748f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
15758f46ffcaSHong Zhang 
15768f46ffcaSHong Zhang   nmatch=0;
15778f46ffcaSHong Zhang   k     = 0;
15788f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
15798f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
15808f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
15818f46ffcaSHong Zhang         k = j; nmatch++;
15828f46ffcaSHong Zhang         break;
15838f46ffcaSHong Zhang       }
15848f46ffcaSHong Zhang     }
15858f46ffcaSHong Zhang   }
15868f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
15878f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15888f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
15898f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
15901098a8e8SHong Zhang   if (nmatch < sz1) {
15911098a8e8SHong Zhang     *flg = PETSC_FALSE;
15921098a8e8SHong Zhang   } else {
15931098a8e8SHong Zhang     *flg = PETSC_TRUE;
15941098a8e8SHong Zhang   }
159536032a97SHong Zhang   PetscFunctionReturn(0);
15968f46ffcaSHong Zhang }
159736032a97SHong Zhang 
15987dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
159936032a97SHong Zhang {
160036032a97SHong Zhang   PetscErrorCode ierr;
160136032a97SHong Zhang   IS             iscol_local;
160236032a97SHong Zhang   PetscInt       csize;
160336032a97SHong Zhang   PetscBool      isequal;
160436032a97SHong Zhang 
160536032a97SHong Zhang   PetscFunctionBegin;
160636032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
160736032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
160836032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
160936032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
161036032a97SHong Zhang   } else {
161136032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
161236032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
161336032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
16148f46ffcaSHong Zhang   }
16158f46ffcaSHong Zhang 
16167dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
16177dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
16188f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
16198f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
16208f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
16218f46ffcaSHong Zhang   }
16228f46ffcaSHong Zhang   PetscFunctionReturn(0);
16238f46ffcaSHong Zhang }
16248f46ffcaSHong Zhang 
1625dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1626a30f8f8cSSatish Balay {
1627a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1628dfbe8321SBarry Smith   PetscErrorCode ierr;
1629a30f8f8cSSatish Balay 
1630a30f8f8cSSatish Balay   PetscFunctionBegin;
1631a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1632a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1633a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1634a30f8f8cSSatish Balay }
1635a30f8f8cSSatish Balay 
1636dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1637a30f8f8cSSatish Balay {
1638a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1639a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1640dfbe8321SBarry Smith   PetscErrorCode ierr;
1641a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1642a30f8f8cSSatish Balay 
1643a30f8f8cSSatish Balay   PetscFunctionBegin;
1644d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
164526fbe8dcSKarl Rupp 
1646a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
164726fbe8dcSKarl Rupp 
1648a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1649a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
165026fbe8dcSKarl Rupp 
1651a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
165226fbe8dcSKarl Rupp 
1653a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1654a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1655a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1656a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1657a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1658a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1659a30f8f8cSSatish Balay     info->memory       = isend[3];
1660a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1661a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1662b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
166326fbe8dcSKarl Rupp 
1664a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1665a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1666a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1667a30f8f8cSSatish Balay     info->memory       = irecv[3];
1668a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1669a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1670b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
167126fbe8dcSKarl Rupp 
1672a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1673a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1674a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1675a30f8f8cSSatish Balay     info->memory       = irecv[3];
1676a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1677f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1678a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1679a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1680a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1681a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1682a30f8f8cSSatish Balay }
1683a30f8f8cSSatish Balay 
1684ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1685a30f8f8cSSatish Balay {
1686a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1687d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1688dfbe8321SBarry Smith   PetscErrorCode ierr;
1689a30f8f8cSSatish Balay 
1690a30f8f8cSSatish Balay   PetscFunctionBegin;
1691e98b92d7SKris Buschelman   switch (op) {
1692512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1693e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
169428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1695a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1696c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1697e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
169843674050SBarry Smith     MatCheckPreallocated(A,1);
16994e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17004e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1701e98b92d7SKris Buschelman     break;
1702e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
170343674050SBarry Smith     MatCheckPreallocated(A,1);
17044e0d8c25SBarry Smith     a->roworiented = flg;
170526fbe8dcSKarl Rupp 
17064e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17074e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1708e98b92d7SKris Buschelman     break;
17094e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1710290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1711e98b92d7SKris Buschelman     break;
1712e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
17134e0d8c25SBarry Smith     a->donotstash = flg;
1714e98b92d7SKris Buschelman     break;
1715e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
17164e0d8c25SBarry Smith     a->ht_flag = flg;
1717e98b92d7SKris Buschelman     break;
17189a4540c5SBarry Smith   case MAT_HERMITIAN:
171943674050SBarry Smith     MatCheckPreallocated(A,1);
1720e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1721eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17220f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1723547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
17240f2140c7SStefano Zampini #endif
1725eeffb40dSHong Zhang     break;
1726ffa07934SHong Zhang   case MAT_SPD:
1727ffa07934SHong Zhang     A->spd_set = PETSC_TRUE;
1728ffa07934SHong Zhang     A->spd     = flg;
1729ffa07934SHong Zhang     if (flg) {
1730ffa07934SHong Zhang       A->symmetric                  = PETSC_TRUE;
1731ffa07934SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
1732ffa07934SHong Zhang       A->symmetric_set              = PETSC_TRUE;
1733ffa07934SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
1734ffa07934SHong Zhang     }
1735ffa07934SHong Zhang     break;
173677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
173743674050SBarry Smith     MatCheckPreallocated(A,1);
1738eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1739eeffb40dSHong Zhang     break;
174077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
174143674050SBarry Smith     MatCheckPreallocated(A,1);
1742eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1743eeffb40dSHong Zhang     break;
17449a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1745e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1746290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
174777e54ba9SKris Buschelman     break;
1748d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
17494e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1750d0d4cfc2SHong Zhang     break;
1751d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
17524e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1753d0d4cfc2SHong Zhang     break;
1754d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
17554e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1756d0d4cfc2SHong Zhang     break;
1757e98b92d7SKris Buschelman   default:
1758e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1759a30f8f8cSSatish Balay   }
1760a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1761a30f8f8cSSatish Balay }
1762a30f8f8cSSatish Balay 
1763fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1764a30f8f8cSSatish Balay {
1765dfbe8321SBarry Smith   PetscErrorCode ierr;
17666e111a19SKarl Rupp 
1767a30f8f8cSSatish Balay   PetscFunctionBegin;
1768cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1769999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1770cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1771cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1772fc4dec0aSBarry Smith   }
17738115998fSBarry Smith   PetscFunctionReturn(0);
1774a30f8f8cSSatish Balay }
1775a30f8f8cSSatish Balay 
1776dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1777a30f8f8cSSatish Balay {
1778a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1779a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1780dfbe8321SBarry Smith   PetscErrorCode ierr;
17815e90f9d9SHong Zhang   PetscInt       nv,m,n;
1782ace3abfcSBarry Smith   PetscBool      flg;
1783a30f8f8cSSatish Balay 
1784a30f8f8cSSatish Balay   PetscFunctionBegin;
1785a30f8f8cSSatish Balay   if (ll != rr) {
1786b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1787e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1788a30f8f8cSSatish Balay   }
1789b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1790b3bf805bSHong Zhang 
17915e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1792e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1793b3bf805bSHong Zhang 
17945e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1795e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
17965e90f9d9SHong Zhang 
1797ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17985e90f9d9SHong Zhang 
17995e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
18000298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
18015e90f9d9SHong Zhang 
18025e90f9d9SHong Zhang   /* scale the diagonal part */
1803a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1804a30f8f8cSSatish Balay 
18055e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1806ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18070298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1808a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1809a30f8f8cSSatish Balay }
1810a30f8f8cSSatish Balay 
1811dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1812a30f8f8cSSatish Balay {
1813f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1814dfbe8321SBarry Smith   PetscErrorCode ierr;
1815a30f8f8cSSatish Balay 
1816a30f8f8cSSatish Balay   PetscFunctionBegin;
1817a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1818a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1819a30f8f8cSSatish Balay }
1820a30f8f8cSSatish Balay 
18216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1822a30f8f8cSSatish Balay 
1823ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1824a30f8f8cSSatish Balay {
1825a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1826a30f8f8cSSatish Balay   Mat            a,b,c,d;
1827ace3abfcSBarry Smith   PetscBool      flg;
1828dfbe8321SBarry Smith   PetscErrorCode ierr;
1829a30f8f8cSSatish Balay 
1830a30f8f8cSSatish Balay   PetscFunctionBegin;
1831a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1832a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1833a30f8f8cSSatish Balay 
1834a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1835abc0a331SBarry Smith   if (flg) {
1836a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1837a30f8f8cSSatish Balay   }
1838b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1839a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1840a30f8f8cSSatish Balay }
1841a30f8f8cSSatish Balay 
18423c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
18433c896bc6SHong Zhang {
18443c896bc6SHong Zhang   PetscErrorCode ierr;
18454c7a3774SStefano Zampini   PetscBool      isbaij;
18463c896bc6SHong Zhang 
18473c896bc6SHong Zhang   PetscFunctionBegin;
18484c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
18494c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
18503c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18513c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1852d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
18533c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1854d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
18553c896bc6SHong Zhang   } else {
18564c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
18574c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
18584c7a3774SStefano Zampini 
18593c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18603c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18613c896bc6SHong Zhang   }
1862cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18633c896bc6SHong Zhang   PetscFunctionReturn(0);
18643c896bc6SHong Zhang }
18653c896bc6SHong Zhang 
18664994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1867273d9f13SBarry Smith {
1868dfbe8321SBarry Smith   PetscErrorCode ierr;
1869273d9f13SBarry Smith 
1870273d9f13SBarry Smith   PetscFunctionBegin;
1871535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1872273d9f13SBarry Smith   PetscFunctionReturn(0);
1873273d9f13SBarry Smith }
1874a5e6ed63SBarry Smith 
18754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18764fe895cdSHong Zhang {
18774fe895cdSHong Zhang   PetscErrorCode ierr;
18784fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
18794fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18804fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
18814fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
18824fe895cdSHong Zhang 
18834fe895cdSHong Zhang   PetscFunctionBegin;
18844fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18854fe895cdSHong Zhang     PetscScalar alpha = a;
18864fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
18874fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1888c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
18898b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
18904fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
18914fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1892c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
18938b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1894a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1895ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1896ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1897ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1898ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
18994fe895cdSHong Zhang   } else {
19004de5dceeSHong Zhang     Mat      B;
19014de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
19024de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1903d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
19044de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
19054de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
19064de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
19074de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
19084de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
19094de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
19104de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
19114de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
19124de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
19134de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
19144de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
19154de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
191628be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
19174de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
19184de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1919d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
19204de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
19214fe895cdSHong Zhang   }
19224fe895cdSHong Zhang   PetscFunctionReturn(0);
19234fe895cdSHong Zhang }
19244fe895cdSHong Zhang 
19257dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1926a5e6ed63SBarry Smith {
19276849ba73SBarry Smith   PetscErrorCode ierr;
19281302d50aSBarry Smith   PetscInt       i;
1929afebec48SHong Zhang   PetscBool      flg;
1930a5e6ed63SBarry Smith 
19316849ba73SBarry Smith   PetscFunctionBegin;
19327dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1933a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1934a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1935afebec48SHong Zhang     if (!flg) {
1936b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1937a5e6ed63SBarry Smith     }
19384dcd73b1SHong Zhang   }
1939a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1940a5e6ed63SBarry Smith }
1941a5e6ed63SBarry Smith 
19427d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
19437d68702bSBarry Smith {
19447d68702bSBarry Smith   PetscErrorCode ierr;
19457d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
19466f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
19477d68702bSBarry Smith 
19487d68702bSBarry Smith   PetscFunctionBegin;
19496f33a894SBarry Smith   if (!Y->preallocated) {
19507d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
19516f33a894SBarry Smith   } else if (!aij->nz) {
1952b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
19536f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1954b83222d8SBarry Smith     aij->nonew = nonew;
19557d68702bSBarry Smith   }
19567d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
19577d68702bSBarry Smith   PetscFunctionReturn(0);
19587d68702bSBarry Smith }
19597d68702bSBarry Smith 
19603b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
19613b49f96aSBarry Smith {
19623b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
19633b49f96aSBarry Smith   PetscErrorCode ierr;
19643b49f96aSBarry Smith 
19653b49f96aSBarry Smith   PetscFunctionBegin;
19663b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
19673b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
19683b49f96aSBarry Smith   if (d) {
19693b49f96aSBarry Smith     PetscInt rstart;
19703b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
19713b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
19723b49f96aSBarry Smith 
19733b49f96aSBarry Smith   }
19743b49f96aSBarry Smith   PetscFunctionReturn(0);
19753b49f96aSBarry Smith }
19763b49f96aSBarry Smith 
1977a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1978a5b7ff6bSBarry Smith {
1979a5b7ff6bSBarry Smith   PetscFunctionBegin;
1980a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1981a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1982a5b7ff6bSBarry Smith }
19833b49f96aSBarry Smith 
1984a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
19853964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1986a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1987a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1988a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
198997304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1990431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1991431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1992a30f8f8cSSatish Balay                                        0,
1993a30f8f8cSSatish Balay                                        0,
1994a30f8f8cSSatish Balay                                        0,
199597304618SKris Buschelman                                /* 10*/ 0,
1996a30f8f8cSSatish Balay                                        0,
1997a30f8f8cSSatish Balay                                        0,
199841f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1999a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
200097304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
2001a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
2002a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
2003a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
2004a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
200597304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
2006a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
2007a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
2008a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
2009d519adbfSMatthew Knepley                                /* 24*/ 0,
2010a30f8f8cSSatish Balay                                        0,
2011a30f8f8cSSatish Balay                                        0,
2012a30f8f8cSSatish Balay                                        0,
2013a30f8f8cSSatish Balay                                        0,
20144994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
2015b5df2d14SHong Zhang                                        0,
2016a30f8f8cSSatish Balay                                        0,
2017a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
2018a30f8f8cSSatish Balay                                        0,
2019d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
2020a30f8f8cSSatish Balay                                        0,
2021a30f8f8cSSatish Balay                                        0,
2022a30f8f8cSSatish Balay                                        0,
2023a30f8f8cSSatish Balay                                        0,
2024d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
20257dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
2026d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
2027a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
20283c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
2029d519adbfSMatthew Knepley                                /* 44*/ 0,
2030a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
20317d68702bSBarry Smith                                        MatShift_MPISBAIJ,
2032a30f8f8cSSatish Balay                                        0,
2033a30f8f8cSSatish Balay                                        0,
2034f73d5cc4SBarry Smith                                /* 49*/ 0,
2035a30f8f8cSSatish Balay                                        0,
2036a30f8f8cSSatish Balay                                        0,
2037a30f8f8cSSatish Balay                                        0,
2038a30f8f8cSSatish Balay                                        0,
2039d519adbfSMatthew Knepley                                /* 54*/ 0,
2040a30f8f8cSSatish Balay                                        0,
2041a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
2042a30f8f8cSSatish Balay                                        0,
2043a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
20447dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
2045a30f8f8cSSatish Balay                                        0,
2046a30f8f8cSSatish Balay                                        0,
2047357abbc8SBarry Smith                                        0,
204824d5174aSHong Zhang                                        0,
2049d519adbfSMatthew Knepley                                /* 64*/ 0,
205024d5174aSHong Zhang                                        0,
205124d5174aSHong Zhang                                        0,
205224d5174aSHong Zhang                                        0,
205324d5174aSHong Zhang                                        0,
2054d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
205524d5174aSHong Zhang                                        0,
205697304618SKris Buschelman                                        0,
205797304618SKris Buschelman                                        0,
205897304618SKris Buschelman                                        0,
2059d519adbfSMatthew Knepley                                /* 74*/ 0,
206097304618SKris Buschelman                                        0,
206197304618SKris Buschelman                                        0,
206297304618SKris Buschelman                                        0,
206397304618SKris Buschelman                                        0,
2064d519adbfSMatthew Knepley                                /* 79*/ 0,
206597304618SKris Buschelman                                        0,
206697304618SKris Buschelman                                        0,
206797304618SKris Buschelman                                        0,
20685bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
2069d519adbfSMatthew Knepley                                /* 84*/ 0,
2070865e5f61SKris Buschelman                                        0,
2071865e5f61SKris Buschelman                                        0,
2072865e5f61SKris Buschelman                                        0,
2073865e5f61SKris Buschelman                                        0,
2074d519adbfSMatthew Knepley                                /* 89*/ 0,
2075865e5f61SKris Buschelman                                        0,
2076865e5f61SKris Buschelman                                        0,
2077865e5f61SKris Buschelman                                        0,
2078865e5f61SKris Buschelman                                        0,
2079d519adbfSMatthew Knepley                                /* 94*/ 0,
2080865e5f61SKris Buschelman                                        0,
2081865e5f61SKris Buschelman                                        0,
208299cafbc1SBarry Smith                                        0,
208399cafbc1SBarry Smith                                        0,
2084d519adbfSMatthew Knepley                                /* 99*/ 0,
208599cafbc1SBarry Smith                                        0,
208699cafbc1SBarry Smith                                        0,
208799cafbc1SBarry Smith                                        0,
208899cafbc1SBarry Smith                                        0,
2089d519adbfSMatthew Knepley                                /*104*/ 0,
209099cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
2091d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
2092d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
209395936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
209495936485SShri Abhyankar                                /*109*/ 0,
209595936485SShri Abhyankar                                        0,
209695936485SShri Abhyankar                                        0,
209795936485SShri Abhyankar                                        0,
20983b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
209995936485SShri Abhyankar                                /*114*/ 0,
210095936485SShri Abhyankar                                        0,
210195936485SShri Abhyankar                                        0,
210295936485SShri Abhyankar                                        0,
210395936485SShri Abhyankar                                        0,
210495936485SShri Abhyankar                                /*119*/ 0,
210595936485SShri Abhyankar                                        0,
210695936485SShri Abhyankar                                        0,
21073964eb88SJed Brown                                        0,
21083964eb88SJed Brown                                        0,
21093964eb88SJed Brown                                /*124*/ 0,
21103964eb88SJed Brown                                        0,
21113964eb88SJed Brown                                        0,
21123964eb88SJed Brown                                        0,
21133964eb88SJed Brown                                        0,
21143964eb88SJed Brown                                /*129*/ 0,
21153964eb88SJed Brown                                        0,
21163964eb88SJed Brown                                        0,
21173964eb88SJed Brown                                        0,
21183964eb88SJed Brown                                        0,
21193964eb88SJed Brown                                /*134*/ 0,
21203964eb88SJed Brown                                        0,
21213964eb88SJed Brown                                        0,
21223964eb88SJed Brown                                        0,
21233964eb88SJed Brown                                        0,
212446533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2125f9426fe0SMark Adams                                        0,
212659f5e6ceSHong Zhang                                        0,
212759f5e6ceSHong Zhang                                        0,
212859f5e6ceSHong Zhang                                        0,
212959f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
213099cafbc1SBarry Smith };
2131a30f8f8cSSatish Balay 
2132b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2133a23d5eceSKris Buschelman {
2134a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
2135dfbe8321SBarry Smith   PetscErrorCode ierr;
2136535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
21375d2a9ed1SStefano Zampini   PetscMPIInt    size;
2138a23d5eceSKris Buschelman 
2139a23d5eceSKris Buschelman   PetscFunctionBegin;
214033d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
214126283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
214226283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2143e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2144899cda47SBarry Smith 
2145a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
2146d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2147d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
2148c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
2149a23d5eceSKris Buschelman 
2150d0f46423SBarry Smith   B->rmap->bs = bs;
2151a23d5eceSKris Buschelman   b->bs2      = bs*bs;
2152a23d5eceSKris Buschelman   b->mbs      = mbs;
2153a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2154de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2155de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2156a23d5eceSKris Buschelman 
2157a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2158d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2159a23d5eceSKris Buschelman   }
2160d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2161d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2162a23d5eceSKris Buschelman 
2163d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2164d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2165a23d5eceSKris Buschelman 
2166cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2167cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2168cb7b82ddSBarry Smith #else
2169cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2170cb7b82ddSBarry Smith #endif
2171cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2172cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2173cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2174cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2175cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2176cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2177cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2178cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2179cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2180cb7b82ddSBarry Smith 
2181cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
21825d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2183cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2184cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
21855d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2186cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2187cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2188cb7b82ddSBarry Smith 
2189526dfc15SBarry Smith   if (!B->preallocated) {
2190f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2191d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
21929c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
21933bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2194ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2195526dfc15SBarry Smith   }
2196a23d5eceSKris Buschelman 
2197526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2198526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
219926fbe8dcSKarl Rupp 
2200526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2201cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2202cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2203a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2204a23d5eceSKris Buschelman }
2205a23d5eceSKris Buschelman 
2206dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2207dfb205c3SBarry Smith {
2208dfb205c3SBarry Smith   PetscInt       m,rstart,cstart,cend;
2209dfb205c3SBarry Smith   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2210dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2211dfb205c3SBarry Smith   PetscScalar    *values=0;
2212dfb205c3SBarry Smith   PetscErrorCode ierr;
2213dfb205c3SBarry Smith 
2214dfb205c3SBarry Smith   PetscFunctionBegin;
2215ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2216dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2217dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2218dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2219dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2220e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2221dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2222dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2223dfb205c3SBarry Smith   cstart = B->cmap->rstart/bs;
2224dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2225dfb205c3SBarry Smith 
2226dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2227dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2228dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2229dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2230dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2231dfb205c3SBarry Smith     nz_max = PetscMax(nz_max,nz);
2232dfb205c3SBarry Smith     JJ     = jj + ii[i];
2233dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
2234dfb205c3SBarry Smith       if (*JJ >= cstart) break;
2235dfb205c3SBarry Smith       JJ++;
2236dfb205c3SBarry Smith     }
2237dfb205c3SBarry Smith     d = 0;
2238dfb205c3SBarry Smith     for (; j<nz; j++) {
2239dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2240dfb205c3SBarry Smith       d++;
2241dfb205c3SBarry Smith     }
2242dfb205c3SBarry Smith     d_nnz[i] = d;
2243dfb205c3SBarry Smith     o_nnz[i] = nz - d;
2244dfb205c3SBarry Smith   }
2245dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2246dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2247dfb205c3SBarry Smith 
2248dfb205c3SBarry Smith   values = (PetscScalar*)V;
2249dfb205c3SBarry Smith   if (!values) {
2250785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2251dfb205c3SBarry Smith     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2252dfb205c3SBarry Smith   }
2253dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2254dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2255dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2256dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2257dfb205c3SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2258dfb205c3SBarry Smith     ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2259dfb205c3SBarry Smith   }
2260dfb205c3SBarry Smith 
2261dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2262dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2263dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
22647827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2265dfb205c3SBarry Smith   PetscFunctionReturn(0);
2266dfb205c3SBarry Smith }
2267dfb205c3SBarry Smith 
22680bad9183SKris Buschelman /*MC
2269fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2270828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2271828413b8SBarry Smith    the matrix is stored.
2272828413b8SBarry Smith 
2273828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2274828413b8SBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN);
22750bad9183SKris Buschelman 
22760bad9183SKris Buschelman    Options Database Keys:
22770bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
22780bad9183SKris Buschelman 
22790bad9183SKris Buschelman   Level: beginner
22800bad9183SKris Buschelman 
22810bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
22820bad9183SKris Buschelman M*/
22830bad9183SKris Buschelman 
22848cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2285b5df2d14SHong Zhang {
2286b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2287dfbe8321SBarry Smith   PetscErrorCode ierr;
228894ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2289b5df2d14SHong Zhang 
2290b5df2d14SHong Zhang   PetscFunctionBegin;
2291b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2292b0a32e0cSBarry Smith   B->data = (void*)b;
2293b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2294b5df2d14SHong Zhang 
2295b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2296b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2297b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2298b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
229926fbe8dcSKarl Rupp 
2300ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2301ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2302b5df2d14SHong Zhang 
2303b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2304854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2305b5df2d14SHong Zhang 
2306b5df2d14SHong Zhang   /* build cache for off array entries formed */
2307ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
230826fbe8dcSKarl Rupp 
2309b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
23100298fd71SBarry Smith   b->colmap      = NULL;
23110298fd71SBarry Smith   b->garray      = NULL;
2312b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2313b5df2d14SHong Zhang 
2314b5df2d14SHong Zhang   /* stuff used in block assembly */
2315b5df2d14SHong Zhang   b->barray = 0;
2316b5df2d14SHong Zhang 
2317b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2318b5df2d14SHong Zhang   b->lvec    = 0;
2319b5df2d14SHong Zhang   b->Mvctx   = 0;
232040781036SHong Zhang   b->slvec0  = 0;
232140781036SHong Zhang   b->slvec0b = 0;
232240781036SHong Zhang   b->slvec1  = 0;
232340781036SHong Zhang   b->slvec1a = 0;
232440781036SHong Zhang   b->slvec1b = 0;
232540781036SHong Zhang   b->sMvctx  = 0;
2326b5df2d14SHong Zhang 
2327b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2328b5df2d14SHong Zhang   b->rowindices   = 0;
2329b5df2d14SHong Zhang   b->rowvalues    = 0;
2330b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2331b5df2d14SHong Zhang 
2332b5df2d14SHong Zhang   /* hash table stuff */
2333b5df2d14SHong Zhang   b->ht           = 0;
2334b5df2d14SHong Zhang   b->hd           = 0;
2335b5df2d14SHong Zhang   b->ht_size      = 0;
2336b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2337b5df2d14SHong Zhang   b->ht_fact      = 0;
2338b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2339b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2340b5df2d14SHong Zhang 
23417dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
23427a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
23437a868f3eSHong Zhang 
234459ffdab8SBarry Smith   b->in_loc = 0;
234559ffdab8SBarry Smith   b->v_loc  = 0;
234659ffdab8SBarry Smith   b->n_loc  = 0;
234794ae4db5SBarry Smith 
2348bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2349bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2350bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2351bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
23526214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
23536214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
23546214f412SHong Zhang #endif
2355b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr);
2356b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_XAIJ);CHKERRQ(ierr);
2357aa5a9175SDahai Guo 
235823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
235923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
236023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
236123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
23629899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
236326fbe8dcSKarl Rupp 
236413647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
236513647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
236613647f61SHong Zhang 
236717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
236894ae4db5SBarry Smith   ierr      = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
236994ae4db5SBarry Smith   ierr      = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
237094ae4db5SBarry Smith   if (flg) {
237194ae4db5SBarry Smith     PetscReal fact = 1.39;
237294ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
237394ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
237494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
237594ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
237694ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
237794ae4db5SBarry Smith   }
237894ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2379b5df2d14SHong Zhang   PetscFunctionReturn(0);
2380b5df2d14SHong Zhang }
2381b5df2d14SHong Zhang 
2382209238afSKris Buschelman /*MC
2383002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2384209238afSKris Buschelman 
2385209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2386209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2387209238afSKris Buschelman 
2388209238afSKris Buschelman    Options Database Keys:
2389209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2390209238afSKris Buschelman 
2391209238afSKris Buschelman   Level: beginner
2392209238afSKris Buschelman 
2393209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2394209238afSKris Buschelman M*/
2395209238afSKris Buschelman 
2396b5df2d14SHong Zhang /*@C
2397b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2398b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2399b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2400b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2401b5df2d14SHong Zhang 
2402b5df2d14SHong Zhang    Collective on Mat
2403b5df2d14SHong Zhang 
2404b5df2d14SHong Zhang    Input Parameters:
24051c4f3114SJed Brown +  B - the matrix
2406bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2407bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2408b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2409b5df2d14SHong Zhang            submatrix  (same for all local rows)
2410b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
24116d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
24120298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
241395742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2414b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2415b5df2d14SHong Zhang            submatrix (same for all local rows).
2416b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2417c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
24180298fd71SBarry Smith            (possibly different for each block row) or NULL.
2419b5df2d14SHong Zhang 
2420b5df2d14SHong Zhang 
2421b5df2d14SHong Zhang    Options Database Keys:
2422*a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2423b5df2d14SHong Zhang                      block calculations (much slower)
2424*a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2425b5df2d14SHong Zhang 
2426b5df2d14SHong Zhang    Notes:
2427b5df2d14SHong Zhang 
2428b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2429b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2430b5df2d14SHong Zhang 
243149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
243249a6f317SBarry Smith 
2433b5df2d14SHong Zhang    Storage Information:
2434b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2435b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2436b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2437b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2438b5df2d14SHong Zhang 
2439b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2440b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
24410298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2442b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2443b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2444b5df2d14SHong Zhang 
2445aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2446aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2447aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2448aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2449aa95bbe8SBarry Smith 
2450b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2451b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2452b5df2d14SHong Zhang 
2453b5df2d14SHong Zhang .vb
2454b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2455a4b1a0f6SJed Brown           --------------------------
2456c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2457c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2458c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2459a4b1a0f6SJed Brown           --------------------------
2460b5df2d14SHong Zhang .ve
2461b5df2d14SHong Zhang 
2462b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2463b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
24646d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24656d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2466b5df2d14SHong Zhang 
24676d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24686d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2469c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2470c2fc9fa9SBarry Smith 
2471b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2472b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2473b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2474b5df2d14SHong Zhang    matrices.
2475b5df2d14SHong Zhang 
2476b5df2d14SHong Zhang    Level: intermediate
2477b5df2d14SHong Zhang 
2478b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
2479b5df2d14SHong Zhang 
2480ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2481b5df2d14SHong Zhang @*/
24827087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2483b5df2d14SHong Zhang {
24844ac538c5SBarry Smith   PetscErrorCode ierr;
2485b5df2d14SHong Zhang 
2486b5df2d14SHong Zhang   PetscFunctionBegin;
24876ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
24886ba663aaSJed Brown   PetscValidType(B,1);
24896ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
24904ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2491b5df2d14SHong Zhang   PetscFunctionReturn(0);
2492b5df2d14SHong Zhang }
2493b5df2d14SHong Zhang 
2494a30f8f8cSSatish Balay /*@C
249569b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2496a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2497a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2498a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2499a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2500a30f8f8cSSatish Balay 
2501a30f8f8cSSatish Balay    Collective on MPI_Comm
2502a30f8f8cSSatish Balay 
2503a30f8f8cSSatish Balay    Input Parameters:
2504a30f8f8cSSatish Balay +  comm - MPI communicator
2505bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2506bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2507a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2508a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2509a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2510a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2511a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2512a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2513a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2514a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2515a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2516a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2517a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
25186d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
25190298fd71SBarry Smith            (possibly different for each block block row) or NULL.
252095742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
252195742e49SBarry Smith            set its value even if it is zero.
2522a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2523a30f8f8cSSatish Balay            submatrix (same for all local rows).
2524a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2525a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
25260298fd71SBarry Smith            each block row) or NULL.
2527a30f8f8cSSatish Balay 
2528a30f8f8cSSatish Balay    Output Parameter:
2529a30f8f8cSSatish Balay .  A - the matrix
2530a30f8f8cSSatish Balay 
2531a30f8f8cSSatish Balay    Options Database Keys:
2532*a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2533a30f8f8cSSatish Balay                      block calculations (much slower)
2534a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2535*a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2536a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2537a30f8f8cSSatish Balay 
2538175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2539f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2540175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2541175b88e8SBarry Smith 
2542a30f8f8cSSatish Balay    Notes:
2543d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
25446d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2545d1be2dadSMatthew Knepley 
2546a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2547a30f8f8cSSatish Balay    (possibly both).
2548a30f8f8cSSatish Balay 
2549a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2550a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2551a30f8f8cSSatish Balay 
255249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
255349a6f317SBarry Smith 
2554a30f8f8cSSatish Balay    Storage Information:
2555a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2556a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2557a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2558a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2559a30f8f8cSSatish Balay 
2560a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2561a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
25620298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2563a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2564a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2565a30f8f8cSSatish Balay 
2566a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2567a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2568a30f8f8cSSatish Balay 
2569a30f8f8cSSatish Balay .vb
2570a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2571a4b1a0f6SJed Brown           --------------------------
2572c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2573c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2574c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2575a4b1a0f6SJed Brown           --------------------------
2576a30f8f8cSSatish Balay .ve
2577a30f8f8cSSatish Balay 
2578a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2579a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
25806d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
25816d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2582a30f8f8cSSatish Balay 
25836d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
25846d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2585a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2586a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2587a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2588a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2589a30f8f8cSSatish Balay    matrices.
2590a30f8f8cSSatish Balay 
2591a30f8f8cSSatish Balay    Level: intermediate
2592a30f8f8cSSatish Balay 
2593a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2594a30f8f8cSSatish Balay 
259569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2596a30f8f8cSSatish Balay @*/
2597a30f8f8cSSatish Balay 
259869b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2599a30f8f8cSSatish Balay {
26006849ba73SBarry Smith   PetscErrorCode ierr;
26011302d50aSBarry Smith   PetscMPIInt    size;
2602a30f8f8cSSatish Balay 
2603a30f8f8cSSatish Balay   PetscFunctionBegin;
2604f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2605f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2606273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2607273d9f13SBarry Smith   if (size > 1) {
2608b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2609b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2610273d9f13SBarry Smith   } else {
2611273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2612273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2613273d9f13SBarry Smith   }
2614a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2615a30f8f8cSSatish Balay }
2616a30f8f8cSSatish Balay 
2617a30f8f8cSSatish Balay 
26186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2619a30f8f8cSSatish Balay {
2620a30f8f8cSSatish Balay   Mat            mat;
2621a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2622dfbe8321SBarry Smith   PetscErrorCode ierr;
2623d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2624387bc808SHong Zhang   PetscScalar    *array;
2625a30f8f8cSSatish Balay 
2626a30f8f8cSSatish Balay   PetscFunctionBegin;
2627a30f8f8cSSatish Balay   *newmat = 0;
262826fbe8dcSKarl Rupp 
2629ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2630d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
26317adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
26321e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
26331e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2634e1b6402fSHong Zhang 
2635d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2636273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
263782327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
26387fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26397fff6886SHong Zhang 
2640b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2641a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2642a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2643a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2644a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2645a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2646a30f8f8cSSatish Balay 
2647a30f8f8cSSatish Balay   a->size         = oldmat->size;
2648a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2649a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2650a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2651a30f8f8cSSatish Balay   a->rowindices   = 0;
2652a30f8f8cSSatish Balay   a->rowvalues    = 0;
2653a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2654a30f8f8cSSatish Balay   a->barray       = 0;
2655899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2656899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2657899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2658899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2659a30f8f8cSSatish Balay 
2660a30f8f8cSSatish Balay   /* hash table stuff */
2661a30f8f8cSSatish Balay   a->ht           = 0;
2662a30f8f8cSSatish Balay   a->hd           = 0;
2663a30f8f8cSSatish Balay   a->ht_size      = 0;
2664a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2665a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2666a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2667a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2668a30f8f8cSSatish Balay 
2669899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2670a30f8f8cSSatish Balay   if (oldmat->colmap) {
2671a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2672a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2673a30f8f8cSSatish Balay #else
2674854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
26753bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
26761302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2677a30f8f8cSSatish Balay #endif
2678a30f8f8cSSatish Balay   } else a->colmap = 0;
2679387bc808SHong Zhang 
2680a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2681785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
26823bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
26831302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2684a30f8f8cSSatish Balay   } else a->garray = 0;
2685a30f8f8cSSatish Balay 
2686ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2687a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
26883bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2689a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
26903bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
269182327fa8SHong Zhang 
269282327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
26933bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
269482327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
26953bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2696387bc808SHong Zhang 
2697387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
26981ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2699778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2700778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
27011ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
27021ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2703778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
27041ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
27053bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
27063bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
27073bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
27083bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
27093bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2710387bc808SHong Zhang 
2711387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2712387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2713387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
27143bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
271582327fa8SHong Zhang 
2716a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
27173bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2718a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
27193bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2720140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2721a30f8f8cSSatish Balay   *newmat = mat;
2722a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2723a30f8f8cSSatish Balay }
2724a30f8f8cSSatish Balay 
2725112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
272695936485SShri Abhyankar {
272795936485SShri Abhyankar   PetscErrorCode ierr;
272895936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
272995936485SShri Abhyankar   PetscScalar    *vals,*buf;
2730ce94432eSBarry Smith   MPI_Comm       comm;
273195936485SShri Abhyankar   MPI_Status     status;
2732adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2733adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
273495936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
27353059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
273695936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2737461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
273895936485SShri Abhyankar   int            fd;
27397f489da9SVaclav Hapla   PetscBool      isbinary;
274095936485SShri Abhyankar 
274195936485SShri Abhyankar   PetscFunctionBegin;
27427f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
27437f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
27447f489da9SVaclav Hapla 
2745c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2746c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2747ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
27480298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
27490298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
275095936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
27513059b6faSBarry Smith   if (bs < 0) bs = 1;
275295936485SShri Abhyankar 
275395936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
275495936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
275595936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
27565872f025SBarry Smith   if (!rank) {
275795936485SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
275895936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
275902f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
276095936485SShri Abhyankar   }
276195936485SShri Abhyankar 
276295936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
276326fbe8dcSKarl Rupp   M    = header[1];
276426fbe8dcSKarl Rupp   N    = header[2];
276595936485SShri Abhyankar 
276695936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2767461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2768461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
276995936485SShri Abhyankar 
277095936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
277195936485SShri Abhyankar 
277295936485SShri Abhyankar   /*
277395936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
277495936485SShri Abhyankar      divisible by the blocksize
277595936485SShri Abhyankar   */
277695936485SShri Abhyankar   Mbs        = M/bs;
277795936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
277895936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
277995936485SShri Abhyankar   else                  Mbs++;
278095936485SShri Abhyankar   if (extra_rows &&!rank) {
278195936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
278295936485SShri Abhyankar   }
278395936485SShri Abhyankar 
278495936485SShri Abhyankar   /* determine ownership of all rows */
278595936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
278695936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
278795936485SShri Abhyankar     m   = mbs*bs;
278895936485SShri Abhyankar   } else { /* User Set */
278995936485SShri Abhyankar     m   = newmat->rmap->n;
279095936485SShri Abhyankar     mbs = m/bs;
279195936485SShri Abhyankar   }
2792dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
27934dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
279495936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
279595936485SShri Abhyankar   rowners[0] = 0;
279695936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
279795936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
279895936485SShri Abhyankar   rstart = rowners[rank];
279995936485SShri Abhyankar   rend   = rowners[rank+1];
280095936485SShri Abhyankar 
280195936485SShri Abhyankar   /* distribute row lengths to all processors */
2802785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
280395936485SShri Abhyankar   if (!rank) {
2804854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
280595936485SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
280695936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2807785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
280895936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
280995936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
281095936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
281195936485SShri Abhyankar   } else {
281295936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
281395936485SShri Abhyankar   }
281495936485SShri Abhyankar 
281595936485SShri Abhyankar   if (!rank) {   /* procs[0] */
281695936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2817785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
281895936485SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
281995936485SShri Abhyankar     for (i=0; i<size; i++) {
282095936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
282195936485SShri Abhyankar         procsnz[i] += rowlengths[j];
282295936485SShri Abhyankar       }
282395936485SShri Abhyankar     }
282495936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
282595936485SShri Abhyankar 
282695936485SShri Abhyankar     /* determine max buffer needed and allocate it */
282795936485SShri Abhyankar     maxnz = 0;
282895936485SShri Abhyankar     for (i=0; i<size; i++) {
282995936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
283095936485SShri Abhyankar     }
2831785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
283295936485SShri Abhyankar 
283395936485SShri Abhyankar     /* read in my part of the matrix column indices  */
283495936485SShri Abhyankar     nz     = procsnz[0];
2835785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
283695936485SShri Abhyankar     mycols = ibuf;
283795936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
283895936485SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
283926fbe8dcSKarl Rupp     if (size == 1) {
284026fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
284126fbe8dcSKarl Rupp     }
284295936485SShri Abhyankar 
284395936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
284495936485SShri Abhyankar     for (i=1; i<size-1; i++) {
284595936485SShri Abhyankar       nz   = procsnz[i];
284695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
284795936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
284895936485SShri Abhyankar     }
284995936485SShri Abhyankar     /* read in the stuff for the last proc */
285095936485SShri Abhyankar     if (size != 1) {
285195936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
285295936485SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
285395936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
285495936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
285595936485SShri Abhyankar     }
285695936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
285795936485SShri Abhyankar   } else {  /* procs[i], i>0 */
285895936485SShri Abhyankar     /* determine buffer space needed for message */
285995936485SShri Abhyankar     nz = 0;
286026fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2861785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
286295936485SShri Abhyankar     mycols = ibuf;
286395936485SShri Abhyankar     /* receive message of column indices*/
286495936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
286595936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
286695936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
286795936485SShri Abhyankar   }
286895936485SShri Abhyankar 
286995936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2870dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2871dcca6d9dSJed Brown   ierr     = PetscMalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
287295936485SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
287395936485SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
287495936485SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
287595936485SShri Abhyankar   rowcount = 0;
287695936485SShri Abhyankar   nzcount  = 0;
287795936485SShri Abhyankar   for (i=0; i<mbs; i++) {
287895936485SShri Abhyankar     dcount  = 0;
287995936485SShri Abhyankar     odcount = 0;
288095936485SShri Abhyankar     for (j=0; j<bs; j++) {
288195936485SShri Abhyankar       kmax = locrowlens[rowcount];
288295936485SShri Abhyankar       for (k=0; k<kmax; k++) {
288395936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
288495936485SShri Abhyankar         if (!mask[tmp]) {
288595936485SShri Abhyankar           mask[tmp] = 1;
288695936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
288795936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
288895936485SShri Abhyankar         }
288995936485SShri Abhyankar       }
289095936485SShri Abhyankar       rowcount++;
289195936485SShri Abhyankar     }
289295936485SShri Abhyankar 
289395936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
289495936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
289595936485SShri Abhyankar 
289695936485SShri Abhyankar     /* zero out the mask elements we set */
289795936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
289895936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
289995936485SShri Abhyankar   }
290095936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
290195936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
29026816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
290395936485SShri Abhyankar 
290495936485SShri Abhyankar   if (!rank) {
2905785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
290695936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
290795936485SShri Abhyankar     nz     = procsnz[0];
290895936485SShri Abhyankar     vals   = buf;
290995936485SShri Abhyankar     mycols = ibuf;
291095936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
291195936485SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
291226fbe8dcSKarl Rupp     if (size == 1) {
291326fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
291426fbe8dcSKarl Rupp     }
291595936485SShri Abhyankar 
291695936485SShri Abhyankar     /* insert into matrix */
291795936485SShri Abhyankar     jj = rstart*bs;
291895936485SShri Abhyankar     for (i=0; i<m; i++) {
291995936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
292095936485SShri Abhyankar       mycols += locrowlens[i];
292195936485SShri Abhyankar       vals   += locrowlens[i];
292295936485SShri Abhyankar       jj++;
292395936485SShri Abhyankar     }
292495936485SShri Abhyankar 
292595936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
292695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
292795936485SShri Abhyankar       nz   = procsnz[i];
292895936485SShri Abhyankar       vals = buf;
292995936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
293095936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
293195936485SShri Abhyankar     }
293295936485SShri Abhyankar     /* the last proc */
293395936485SShri Abhyankar     if (size != 1) {
293495936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
293595936485SShri Abhyankar       vals = buf;
293695936485SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
293795936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
293895936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
293995936485SShri Abhyankar     }
294095936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
294195936485SShri Abhyankar 
294295936485SShri Abhyankar   } else {
294395936485SShri Abhyankar     /* receive numeric values */
2944785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
294595936485SShri Abhyankar 
294695936485SShri Abhyankar     /* receive message of values*/
294795936485SShri Abhyankar     vals   = buf;
294895936485SShri Abhyankar     mycols = ibuf;
294995936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
295095936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
295195936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
295295936485SShri Abhyankar 
295395936485SShri Abhyankar     /* insert into matrix */
295495936485SShri Abhyankar     jj = rstart*bs;
295595936485SShri Abhyankar     for (i=0; i<m; i++) {
295695936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
295795936485SShri Abhyankar       mycols += locrowlens[i];
295895936485SShri Abhyankar       vals   += locrowlens[i];
295995936485SShri Abhyankar       jj++;
296095936485SShri Abhyankar     }
296195936485SShri Abhyankar   }
296295936485SShri Abhyankar 
296395936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
296495936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
296595936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
296695936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
296795936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
296895936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
296995936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
297095936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
297195936485SShri Abhyankar   PetscFunctionReturn(0);
297295936485SShri Abhyankar }
297395936485SShri Abhyankar 
2974dcf5cc72SBarry Smith /*XXXXX@
2975a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2976a30f8f8cSSatish Balay 
2977a30f8f8cSSatish Balay    Input Parameters:
2978a30f8f8cSSatish Balay .  mat  - the matrix
2979a30f8f8cSSatish Balay .  fact - factor
2980a30f8f8cSSatish Balay 
2981c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2982a30f8f8cSSatish Balay 
2983a30f8f8cSSatish Balay    Level: advanced
2984a30f8f8cSSatish Balay 
2985a30f8f8cSSatish Balay   Notes:
2986a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2987a30f8f8cSSatish Balay 
2988a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2989a30f8f8cSSatish Balay 
2990a30f8f8cSSatish Balay .seealso: MatSetOption()
2991dcf5cc72SBarry Smith @XXXXX*/
2992dcf5cc72SBarry Smith 
299324d5174aSHong Zhang 
2994985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
299524d5174aSHong Zhang {
299624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2997f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2998ca54ac64SHong Zhang   PetscReal      atmp;
299987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
3000dfbe8321SBarry Smith   PetscErrorCode ierr;
30011302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
30021302d50aSBarry Smith   PetscMPIInt    rank,size;
30031302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
300487828ca2SBarry Smith   PetscScalar    *va;
30058a1c53f2SBarry Smith   MatScalar      *ba;
3006f4c0e9e4SHong Zhang   MPI_Status     stat;
300724d5174aSHong Zhang 
300824d5174aSHong Zhang   PetscFunctionBegin;
3009e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
30100298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
30111ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
3012f4c0e9e4SHong Zhang 
3013ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
3014ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
3015f4c0e9e4SHong Zhang 
3016d0f46423SBarry Smith   bs  = A->rmap->bs;
3017f4c0e9e4SHong Zhang   mbs = a->mbs;
3018f4c0e9e4SHong Zhang   Mbs = a->Mbs;
3019f4c0e9e4SHong Zhang   ba  = b->a;
3020f4c0e9e4SHong Zhang   bi  = b->i;
3021f4c0e9e4SHong Zhang   bj  = b->j;
3022f4c0e9e4SHong Zhang 
3023f4c0e9e4SHong Zhang   /* find ownerships */
3024d0f46423SBarry Smith   rowners_bs = A->rmap->range;
3025f4c0e9e4SHong Zhang 
3026f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
3027785e854fSJed Brown   ierr = PetscMalloc1(bs*Mbs,&work);CHKERRQ(ierr);
3028ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
3029f4c0e9e4SHong Zhang 
3030f4c0e9e4SHong Zhang   /* row_max for B */
3031b8475685SHong Zhang   if (rank != size-1) {
3032f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
3033f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
3034f4c0e9e4SHong Zhang       brow  = bs*i;
3035f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
3036f4c0e9e4SHong Zhang         bcol = bs*(*bj);
3037f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
3038ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
303904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
3040f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
3041f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
3042ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
3043ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
3044f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
3045f4c0e9e4SHong Zhang           }
3046f4c0e9e4SHong Zhang         }
3047f4c0e9e4SHong Zhang         bj++;
3048f4c0e9e4SHong Zhang       }
3049f4c0e9e4SHong Zhang     }
3050f4c0e9e4SHong Zhang 
3051f4c0e9e4SHong Zhang     /* send values to its owners */
3052f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
3053f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
3054ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
3055ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
3056ca54ac64SHong Zhang     }
3057f4c0e9e4SHong Zhang   }
3058f4c0e9e4SHong Zhang 
3059f4c0e9e4SHong Zhang   /* receive values */
3060ca54ac64SHong Zhang   if (rank) {
3061f4c0e9e4SHong Zhang     rvalues = work;
3062ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
3063f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
3064ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
3065f4c0e9e4SHong Zhang       /* process values */
3066f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
3067ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
3068f4c0e9e4SHong Zhang       }
3069f4c0e9e4SHong Zhang     }
3070ca54ac64SHong Zhang   }
3071f4c0e9e4SHong Zhang 
30721ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
3073ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
307424d5174aSHong Zhang   PetscFunctionReturn(0);
307524d5174aSHong Zhang }
30762798e883SHong Zhang 
307741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
30782798e883SHong Zhang {
30792798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
3080dfbe8321SBarry Smith   PetscErrorCode    ierr;
3081d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
30823649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
3083ffe4fb16SHong Zhang   Vec               bb1;
30843649974fSBarry Smith   const PetscScalar *b;
3085ffe4fb16SHong Zhang 
3086ffe4fb16SHong Zhang   PetscFunctionBegin;
3087e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3088e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
3089ffe4fb16SHong Zhang 
3090a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
309141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3092a2b30743SBarry Smith     PetscFunctionReturn(0);
3093a2b30743SBarry Smith   }
3094a2b30743SBarry Smith 
3095ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
3096ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
309741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
3098ffe4fb16SHong Zhang       its--;
3099ffe4fb16SHong Zhang     }
3100ffe4fb16SHong Zhang 
3101ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
3102ffe4fb16SHong Zhang     while (its--) {
3103ffe4fb16SHong Zhang 
3104ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
3105ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3106ffe4fb16SHong Zhang 
3107ffe4fb16SHong Zhang       /* copy xx into slvec0a */
31081ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
31091ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3110ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
31111ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
3112ffe4fb16SHong Zhang 
3113efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
3114ffe4fb16SHong Zhang 
3115ffe4fb16SHong Zhang       /* copy bb into slvec1a */
31161ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
31173649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
3118ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
31191ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
3120ffe4fb16SHong Zhang 
3121ffe4fb16SHong Zhang       /* set slvec1b = 0 */
3122fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3123ffe4fb16SHong Zhang 
3124ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
31251ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3126a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3127ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3128ffe4fb16SHong Zhang 
3129ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
3130ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
3131ffe4fb16SHong Zhang 
3132ffe4fb16SHong Zhang       /* local diagonal sweep */
313341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
3134ffe4fb16SHong Zhang     }
31356bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
3136fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
313741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3138fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
313941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3140fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
3141fa22f6d0SBarry Smith     Vec               xx1;
3142ace3abfcSBarry Smith     PetscBool         hasop;
314320f1ed55SBarry Smith     const PetscScalar *diag;
3144887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
314520f1ed55SBarry Smith     PetscInt          i,n;
3146fa22f6d0SBarry Smith 
3147fa22f6d0SBarry Smith     if (!mat->xx1) {
3148fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
3149fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
3150fa22f6d0SBarry Smith     }
3151fa22f6d0SBarry Smith     xx1 = mat->xx1;
3152fa22f6d0SBarry Smith     bb1 = mat->bb1;
3153fa22f6d0SBarry Smith 
315441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
3155fa22f6d0SBarry Smith 
3156fa22f6d0SBarry Smith     if (!mat->diag) {
3157effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
31582a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
3159fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
3160fa22f6d0SBarry Smith     }
3161fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
3162fa22f6d0SBarry Smith 
3163fa22f6d0SBarry Smith     if (hasop) {
3164fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
3165887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
316620f1ed55SBarry Smith     } else {
316720f1ed55SBarry Smith       /*
316820f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
316920f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
3170887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
317120f1ed55SBarry Smith       */
317220f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31733649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31743649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
317520f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
317620f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
3177887ee2caSBarry Smith       if (omega == 1.0) {
317826fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
317920f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
3180887ee2caSBarry Smith       } else {
318126fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
3182887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
3183887ee2caSBarry Smith       }
318420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
31853649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
31863649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
318720f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
318820f1ed55SBarry Smith     }
3189fa22f6d0SBarry Smith 
3190fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
3191fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3192fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3193fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
3194fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3195fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
3196fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
3197fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3198fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3199fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3200effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
3201fa22f6d0SBarry Smith 
3202fa22f6d0SBarry Smith     /* local sweep */
320341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3204fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3205f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3206ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3207ffe4fb16SHong Zhang }
3208ffe4fb16SHong Zhang 
320941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3210ffe4fb16SHong Zhang {
3211ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3212dfbe8321SBarry Smith   PetscErrorCode ierr;
32132798e883SHong Zhang   Vec            lvec1,bb1;
32142798e883SHong Zhang 
32152798e883SHong Zhang   PetscFunctionBegin;
3216e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3217e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
32182798e883SHong Zhang 
3219c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
32202798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
322141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
32222798e883SHong Zhang       its--;
32232798e883SHong Zhang     }
32242798e883SHong Zhang 
32252798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
32262798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
32272798e883SHong Zhang     while (its--) {
3228ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32292798e883SHong Zhang 
32302798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
32312798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3232efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
32332798e883SHong Zhang 
3234ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32352798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3236ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32372798e883SHong Zhang 
32382798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3239efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
32402798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
32412798e883SHong Zhang 
3242ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32432798e883SHong Zhang 
3244c14dc6b6SHong Zhang       /* diagonal sweep */
324541f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
32462798e883SHong Zhang     }
32476bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
32486bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
32496bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
32502798e883SHong Zhang   PetscFunctionReturn(0);
32512798e883SHong Zhang }
32522798e883SHong Zhang 
3253dfb205c3SBarry Smith /*@
3254dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3255dfb205c3SBarry Smith          CSR format the local rows.
3256dfb205c3SBarry Smith 
3257dfb205c3SBarry Smith    Collective on MPI_Comm
3258dfb205c3SBarry Smith 
3259dfb205c3SBarry Smith    Input Parameters:
3260dfb205c3SBarry Smith +  comm - MPI communicator
3261dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3262dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3263dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3264dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3265dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3266dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3267dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3268483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
3269dfb205c3SBarry Smith .   j - column indices
3270dfb205c3SBarry Smith -   a - matrix values
3271dfb205c3SBarry Smith 
3272dfb205c3SBarry Smith    Output Parameter:
3273dfb205c3SBarry Smith .   mat - the matrix
3274dfb205c3SBarry Smith 
3275dfb205c3SBarry Smith    Level: intermediate
3276dfb205c3SBarry Smith 
3277dfb205c3SBarry Smith    Notes:
3278dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3279dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3280dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3281dfb205c3SBarry Smith 
3282dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3283dfb205c3SBarry Smith 
3284dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3285dfb205c3SBarry Smith 
3286dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
328769b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3288dfb205c3SBarry Smith @*/
32897087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3290dfb205c3SBarry Smith {
3291dfb205c3SBarry Smith   PetscErrorCode ierr;
3292dfb205c3SBarry Smith 
3293dfb205c3SBarry Smith 
3294dfb205c3SBarry Smith   PetscFunctionBegin;
3295f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3296dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3297dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3298dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3299dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3300dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3301dfb205c3SBarry Smith   PetscFunctionReturn(0);
3302dfb205c3SBarry Smith }
3303dfb205c3SBarry Smith 
3304dfb205c3SBarry Smith 
3305dfb205c3SBarry Smith /*@C
3306dfb205c3SBarry Smith    MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
3307dfb205c3SBarry Smith    (the default parallel PETSc format).
3308dfb205c3SBarry Smith 
3309dfb205c3SBarry Smith    Collective on MPI_Comm
3310dfb205c3SBarry Smith 
3311dfb205c3SBarry Smith    Input Parameters:
33121c4f3114SJed Brown +  B - the matrix
3313dfb205c3SBarry Smith .  bs - the block size
3314dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3315dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3316dfb205c3SBarry Smith -  v - optional values in the matrix
3317dfb205c3SBarry Smith 
3318dfb205c3SBarry Smith    Level: developer
3319dfb205c3SBarry Smith 
3320dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3321dfb205c3SBarry Smith 
332269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3323dfb205c3SBarry Smith @*/
33247087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3325dfb205c3SBarry Smith {
33264ac538c5SBarry Smith   PetscErrorCode ierr;
3327dfb205c3SBarry Smith 
3328dfb205c3SBarry Smith   PetscFunctionBegin;
33294ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3330dfb205c3SBarry Smith   PetscFunctionReturn(0);
3331dfb205c3SBarry Smith }
3332dfb205c3SBarry Smith 
333310c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
33344dcd73b1SHong Zhang {
33354dcd73b1SHong Zhang   PetscErrorCode ierr;
333610c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
333710c56fdeSHong Zhang   PetscInt       *indx;
333810c56fdeSHong Zhang   PetscScalar    *values;
3339dfb205c3SBarry Smith 
33404dcd73b1SHong Zhang   PetscFunctionBegin;
33414dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
334210c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
334310c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
334410c56fdeSHong Zhang     PetscInt       *dnz,*onz,sum,bs,cbs,mbs,Nbs;
334510c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
33464dcd73b1SHong Zhang 
334710c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
334810c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
334910c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
335010c56fdeSHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
335110c56fdeSHong Zhang     }
335210c56fdeSHong Zhang     /* Check sum(n) = Nbs */
3353b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
335410c56fdeSHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
335510c56fdeSHong Zhang 
335610c56fdeSHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
335710c56fdeSHong Zhang     rstart -= mbs;
33584dcd73b1SHong Zhang 
33594dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
336010c56fdeSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3361e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
336210c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
33634dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
33644dcd73b1SHong Zhang       nnz  = nnz/bs;
33654dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
33664dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
33674dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
33684dcd73b1SHong Zhang     }
3369e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
33704dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
33714dcd73b1SHong Zhang 
33724dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
337310c56fdeSHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
33744dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
33754dcd73b1SHong Zhang     ierr = MatSetType(*outmat,MATMPISBAIJ);CHKERRQ(ierr);
33764dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
33774dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
33784dcd73b1SHong Zhang   }
33794dcd73b1SHong Zhang 
338010c56fdeSHong Zhang   /* numeric phase */
33814dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
338210c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
33834dcd73b1SHong Zhang 
3384e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
33854dcd73b1SHong Zhang   for (i=0; i<m; i++) {
33864dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33874dcd73b1SHong Zhang     Ii   = i + rstart;
338810c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
33894dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
33904dcd73b1SHong Zhang   }
3391e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
339210c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
339310c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
33944dcd73b1SHong Zhang   PetscFunctionReturn(0);
33954dcd73b1SHong Zhang }
3396