1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*); 12d24d4204SJose E. Roman #endif 13b147fbf3SStefano Zampini 14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 16b147fbf3SStefano Zampini { 17b147fbf3SStefano Zampini Mat preallocator; 18b147fbf3SStefano Zampini PetscInt r,rstart,rend; 19b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 20b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 21b147fbf3SStefano Zampini PetscErrorCode ierr; 22b147fbf3SStefano Zampini 23b147fbf3SStefano Zampini PetscFunctionBegin; 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 25b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 26b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 27b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 28b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 29b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 30b147fbf3SStefano Zampini } 31b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 32b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 38b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 39b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 40b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 41b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 42b147fbf3SStefano Zampini PetscInt ncols; 43b147fbf3SStefano Zampini const PetscInt *row; 44b147fbf3SStefano Zampini const PetscScalar *vals; 45b147fbf3SStefano Zampini 46b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 47b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 48b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 49b147fbf3SStefano Zampini if (symm && symm[i]) { 50b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 53b147fbf3SStefano Zampini } 54b147fbf3SStefano Zampini } 55b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 56b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 57b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 58b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 59b147fbf3SStefano Zampini PetscFunctionReturn(0); 60b147fbf3SStefano Zampini } 61b147fbf3SStefano Zampini 6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 63b147fbf3SStefano Zampini { 64b147fbf3SStefano Zampini Mat B; 65b147fbf3SStefano Zampini PetscErrorCode ierr; 66b147fbf3SStefano Zampini PetscInt r; 67b147fbf3SStefano Zampini 68b147fbf3SStefano Zampini PetscFunctionBegin; 69b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 7028d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 71b147fbf3SStefano Zampini PetscInt bs; 72b147fbf3SStefano Zampini 73b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 77b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 78b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 79b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 8028d58a37SPierre Jolivet ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 8128d58a37SPierre Jolivet if (!isdense) { 82b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 83b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 84b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 8528d58a37SPierre Jolivet } else { 8628d58a37SPierre Jolivet ierr = MatSetUp(B);CHKERRQ(ierr); 8728d58a37SPierre Jolivet } 8828d58a37SPierre Jolivet } else { 8928d58a37SPierre Jolivet B = *newmat; 9028d58a37SPierre Jolivet ierr = MatZeroEntries(B);CHKERRQ(ierr); 9128d58a37SPierre Jolivet } 92b147fbf3SStefano Zampini 93b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 94b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 95b147fbf3SStefano Zampini PetscInt ncols; 96b147fbf3SStefano Zampini const PetscInt *row; 97b147fbf3SStefano Zampini const PetscScalar *vals; 98b147fbf3SStefano Zampini 99b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 100b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 102eb1ec7c1SStefano Zampini if (A->hermitian) { 103eb1ec7c1SStefano Zampini PetscInt i; 104eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 105eb1ec7c1SStefano Zampini ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr); 106eb1ec7c1SStefano Zampini } 107eb1ec7c1SStefano Zampini } else { 108b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 109eb1ec7c1SStefano Zampini } 110eb1ec7c1SStefano Zampini #else 111eb1ec7c1SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 112eb1ec7c1SStefano Zampini #endif 113b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 114b147fbf3SStefano Zampini } 115b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 116b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 117b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 118b147fbf3SStefano Zampini 119b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 120b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 121b147fbf3SStefano Zampini } else { 122b147fbf3SStefano Zampini *newmat = B; 123b147fbf3SStefano Zampini } 124b147fbf3SStefano Zampini PetscFunctionReturn(0); 125b147fbf3SStefano Zampini } 126b147fbf3SStefano Zampini 1277087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 128a30f8f8cSSatish Balay { 129f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 130dfbe8321SBarry Smith PetscErrorCode ierr; 131a30f8f8cSSatish Balay 132a30f8f8cSSatish Balay PetscFunctionBegin; 133a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 134a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 135a30f8f8cSSatish Balay PetscFunctionReturn(0); 136a30f8f8cSSatish Balay } 137a30f8f8cSSatish Balay 1387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 139a30f8f8cSSatish Balay { 140f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 141dfbe8321SBarry Smith PetscErrorCode ierr; 142a30f8f8cSSatish Balay 143a30f8f8cSSatish Balay PetscFunctionBegin; 144a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 145a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 146a30f8f8cSSatish Balay PetscFunctionReturn(0); 147a30f8f8cSSatish Balay } 148a30f8f8cSSatish Balay 149d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 150a30f8f8cSSatish Balay { \ 151a30f8f8cSSatish Balay brow = row/bs; \ 152a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 153a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 154a30f8f8cSSatish Balay bcol = col/bs; \ 155a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 156a30f8f8cSSatish Balay low = 0; high = nrow; \ 157a30f8f8cSSatish Balay while (high-low > 3) { \ 158a30f8f8cSSatish Balay t = (low+high)/2; \ 159a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 160a30f8f8cSSatish Balay else low = t; \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 163a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 164a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 165a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 166a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167a30f8f8cSSatish Balay else *bap = value; \ 168a30f8f8cSSatish Balay goto a_noinsert; \ 169a30f8f8cSSatish Balay } \ 170a30f8f8cSSatish Balay } \ 171a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 172d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 174a30f8f8cSSatish Balay N = nrow++ - 1; \ 175a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 176580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 177580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 178580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 179a30f8f8cSSatish Balay rp[_i] = bcol; \ 180a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 181e56f5c9eSBarry Smith A->nonzerostate++;\ 182a30f8f8cSSatish Balay a_noinsert:; \ 183a30f8f8cSSatish Balay ailen[brow] = nrow; \ 184a30f8f8cSSatish Balay } 185e5e170daSBarry Smith 186d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 187a30f8f8cSSatish Balay { \ 188a30f8f8cSSatish Balay brow = row/bs; \ 189a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 190a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 191a30f8f8cSSatish Balay bcol = col/bs; \ 192a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 193a30f8f8cSSatish Balay low = 0; high = nrow; \ 194a30f8f8cSSatish Balay while (high-low > 3) { \ 195a30f8f8cSSatish Balay t = (low+high)/2; \ 196a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 197a30f8f8cSSatish Balay else low = t; \ 198a30f8f8cSSatish Balay } \ 199a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 200a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 201a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 202a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 203a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 204a30f8f8cSSatish Balay else *bap = value; \ 205a30f8f8cSSatish Balay goto b_noinsert; \ 206a30f8f8cSSatish Balay } \ 207a30f8f8cSSatish Balay } \ 208a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 209d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 210fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 211a30f8f8cSSatish Balay N = nrow++ - 1; \ 212a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 213580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 214580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 215580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay rp[_i] = bcol; \ 217a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 218e56f5c9eSBarry Smith B->nonzerostate++;\ 219a30f8f8cSSatish Balay b_noinsert:; \ 220a30f8f8cSSatish Balay bilen[brow] = nrow; \ 221a30f8f8cSSatish Balay } 222a30f8f8cSSatish Balay 223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 224476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 225a30f8f8cSSatish Balay */ 226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 227a30f8f8cSSatish Balay { 228a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 229a30f8f8cSSatish Balay MatScalar value; 230ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 231dfbe8321SBarry Smith PetscErrorCode ierr; 2321302d50aSBarry Smith PetscInt i,j,row,col; 233d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 234d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 235d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 236a30f8f8cSSatish Balay 237a30f8f8cSSatish Balay /* Some Variables required in the macro */ 238a30f8f8cSSatish Balay Mat A = baij->A; 239a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2401302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 241a30f8f8cSSatish Balay MatScalar *aa =a->a; 242a30f8f8cSSatish Balay 243a30f8f8cSSatish Balay Mat B = baij->B; 244a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2451302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 246a30f8f8cSSatish Balay MatScalar *ba =b->a; 247a30f8f8cSSatish Balay 2481302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2491302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 250a30f8f8cSSatish Balay MatScalar *ap,*bap; 251a30f8f8cSSatish Balay 252a30f8f8cSSatish Balay /* for stash */ 2530298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2540298fd71SBarry Smith MatScalar *v_loc = NULL; 255a30f8f8cSSatish Balay 256a30f8f8cSSatish Balay PetscFunctionBegin; 257a30f8f8cSSatish Balay if (!baij->donotstash) { 25859ffdab8SBarry Smith if (n > baij->n_loc) { 25959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 26059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 261785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 262785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 26326fbe8dcSKarl Rupp 26459ffdab8SBarry Smith baij->n_loc = n; 26559ffdab8SBarry Smith } 26659ffdab8SBarry Smith in_loc = baij->in_loc; 26759ffdab8SBarry Smith v_loc = baij->v_loc; 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 270a30f8f8cSSatish Balay for (i=0; i<m; i++) { 271a30f8f8cSSatish Balay if (im[i] < 0) continue; 272cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 273a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 274a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 275a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27601b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27701b2bd88SHong Zhang if (a->ignore_ltriangular) { 27801b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27926fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 28001b2bd88SHong Zhang } 281a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 282a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 283a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 284a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 285db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 286db4deed7SKarl Rupp else value = v[i+j*m]; 287d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 288a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 289a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 290cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 291a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 292a30f8f8cSSatish Balay if (mat->was_assembled) { 293a30f8f8cSSatish Balay if (!baij->colmap) { 294ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 295a30f8f8cSSatish Balay } 296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 297a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 29871730473SSatish Balay col = col - 1; 299a30f8f8cSSatish Balay #else 30071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 301a30f8f8cSSatish Balay #endif 302a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 303ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 304a30f8f8cSSatish Balay col = in[j]; 305a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 306a30f8f8cSSatish Balay B = baij->B; 307a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 308a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 309a30f8f8cSSatish Balay ba = b->a; 31071730473SSatish Balay } else col += in[j]%bs; 311a30f8f8cSSatish Balay } else col = in[j]; 312db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 313db4deed7SKarl Rupp else value = v[i+j*m]; 314d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 315a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay } else { /* off processor entry */ 3194cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 320a30f8f8cSSatish Balay if (!baij->donotstash) { 3215080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 322a30f8f8cSSatish Balay n_loc = 0; 323a30f8f8cSSatish Balay for (j=0; j<n; j++) { 324f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 325a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 326a30f8f8cSSatish Balay if (roworiented) { 327a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 328a30f8f8cSSatish Balay } else { 329a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 330a30f8f8cSSatish Balay } 331a30f8f8cSSatish Balay n_loc++; 332a30f8f8cSSatish Balay } 333b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 334a30f8f8cSSatish Balay } 335a30f8f8cSSatish Balay } 336a30f8f8cSSatish Balay } 337a30f8f8cSSatish Balay PetscFunctionReturn(0); 338a30f8f8cSSatish Balay } 339a30f8f8cSSatish Balay 34036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34136bd2089SBarry Smith { 34236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 34336bd2089SBarry Smith PetscErrorCode ierr; 34436bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34536bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34636bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34736bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34836bd2089SBarry Smith const PetscScalar *value = v; 34936bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35036bd2089SBarry Smith 35136bd2089SBarry Smith PetscFunctionBegin; 35236bd2089SBarry Smith if (col < row) { 35336bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35436bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35536bd2089SBarry Smith } 35636bd2089SBarry Smith rp = aj + ai[row]; 35736bd2089SBarry Smith ap = aa + bs2*ai[row]; 35836bd2089SBarry Smith rmax = imax[row]; 35936bd2089SBarry Smith nrow = ailen[row]; 36036bd2089SBarry Smith value = v; 36136bd2089SBarry Smith low = 0; 36236bd2089SBarry Smith high = nrow; 36336bd2089SBarry Smith 36436bd2089SBarry Smith while (high-low > 7) { 36536bd2089SBarry Smith t = (low+high)/2; 36636bd2089SBarry Smith if (rp[t] > col) high = t; 36736bd2089SBarry Smith else low = t; 36836bd2089SBarry Smith } 36936bd2089SBarry Smith for (i=low; i<high; i++) { 37036bd2089SBarry Smith if (rp[i] > col) break; 37136bd2089SBarry Smith if (rp[i] == col) { 37236bd2089SBarry Smith bap = ap + bs2*i; 37336bd2089SBarry Smith if (roworiented) { 37436bd2089SBarry Smith if (is == ADD_VALUES) { 37536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37736bd2089SBarry Smith bap[jj] += *value++; 37836bd2089SBarry Smith } 37936bd2089SBarry Smith } 38036bd2089SBarry Smith } else { 38136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38336bd2089SBarry Smith bap[jj] = *value++; 38436bd2089SBarry Smith } 38536bd2089SBarry Smith } 38636bd2089SBarry Smith } 38736bd2089SBarry Smith } else { 38836bd2089SBarry Smith if (is == ADD_VALUES) { 38936bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39136bd2089SBarry Smith *bap++ += *value++; 39236bd2089SBarry Smith } 39336bd2089SBarry Smith } 39436bd2089SBarry Smith } else { 39536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39636bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39736bd2089SBarry Smith *bap++ = *value++; 39836bd2089SBarry Smith } 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith } 40236bd2089SBarry Smith goto noinsert2; 40336bd2089SBarry Smith } 40436bd2089SBarry Smith } 40536bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40636bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 40736bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40836bd2089SBarry Smith N = nrow++ - 1; high++; 40936bd2089SBarry Smith /* shift up all the later entries in this row */ 410580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 411580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 41236bd2089SBarry Smith rp[i] = col; 41336bd2089SBarry Smith bap = ap + bs2*i; 41436bd2089SBarry Smith if (roworiented) { 41536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41736bd2089SBarry Smith bap[jj] = *value++; 41836bd2089SBarry Smith } 41936bd2089SBarry Smith } 42036bd2089SBarry Smith } else { 42136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42236bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42336bd2089SBarry Smith *bap++ = *value++; 42436bd2089SBarry Smith } 42536bd2089SBarry Smith } 42636bd2089SBarry Smith } 42736bd2089SBarry Smith noinsert2:; 42836bd2089SBarry Smith ailen[row] = nrow; 42936bd2089SBarry Smith PetscFunctionReturn(0); 43036bd2089SBarry Smith } 43136bd2089SBarry Smith 43236bd2089SBarry Smith /* 43336bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 43436bd2089SBarry Smith */ 43536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43636bd2089SBarry Smith { 43736bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43836bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 43936bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 44036bd2089SBarry Smith PetscErrorCode ierr; 44136bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 44236bd2089SBarry Smith PetscBool roworiented=a->roworiented; 44336bd2089SBarry Smith const PetscScalar *value = v; 44436bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 44536bd2089SBarry Smith 44636bd2089SBarry Smith PetscFunctionBegin; 44736bd2089SBarry Smith rp = aj + ai[row]; 44836bd2089SBarry Smith ap = aa + bs2*ai[row]; 44936bd2089SBarry Smith rmax = imax[row]; 45036bd2089SBarry Smith nrow = ailen[row]; 45136bd2089SBarry Smith low = 0; 45236bd2089SBarry Smith high = nrow; 45336bd2089SBarry Smith value = v; 45436bd2089SBarry Smith while (high-low > 7) { 45536bd2089SBarry Smith t = (low+high)/2; 45636bd2089SBarry Smith if (rp[t] > col) high = t; 45736bd2089SBarry Smith else low = t; 45836bd2089SBarry Smith } 45936bd2089SBarry Smith for (i=low; i<high; i++) { 46036bd2089SBarry Smith if (rp[i] > col) break; 46136bd2089SBarry Smith if (rp[i] == col) { 46236bd2089SBarry Smith bap = ap + bs2*i; 46336bd2089SBarry Smith if (roworiented) { 46436bd2089SBarry Smith if (is == ADD_VALUES) { 46536bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46636bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46736bd2089SBarry Smith bap[jj] += *value++; 46836bd2089SBarry Smith } 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } else { 47136bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 47236bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 47336bd2089SBarry Smith bap[jj] = *value++; 47436bd2089SBarry Smith } 47536bd2089SBarry Smith } 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } else { 47836bd2089SBarry Smith if (is == ADD_VALUES) { 47936bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48036bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48136bd2089SBarry Smith bap[jj] += value[jj]; 48236bd2089SBarry Smith } 48336bd2089SBarry Smith bap += bs; 48436bd2089SBarry Smith } 48536bd2089SBarry Smith } else { 48636bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48836bd2089SBarry Smith bap[jj] = value[jj]; 48936bd2089SBarry Smith } 49036bd2089SBarry Smith bap += bs; 49136bd2089SBarry Smith } 49236bd2089SBarry Smith } 49336bd2089SBarry Smith } 49436bd2089SBarry Smith goto noinsert2; 49536bd2089SBarry Smith } 49636bd2089SBarry Smith } 49736bd2089SBarry Smith if (nonew == 1) goto noinsert2; 49836bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 49936bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 50036bd2089SBarry Smith N = nrow++ - 1; high++; 50136bd2089SBarry Smith /* shift up all the later entries in this row */ 502580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 503580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 50436bd2089SBarry Smith rp[i] = col; 50536bd2089SBarry Smith bap = ap + bs2*i; 50636bd2089SBarry Smith if (roworiented) { 50736bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50836bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 50936bd2089SBarry Smith bap[jj] = *value++; 51036bd2089SBarry Smith } 51136bd2089SBarry Smith } 51236bd2089SBarry Smith } else { 51336bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 51436bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 51536bd2089SBarry Smith *bap++ = *value++; 51636bd2089SBarry Smith } 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } 51936bd2089SBarry Smith noinsert2:; 52036bd2089SBarry Smith ailen[row] = nrow; 52136bd2089SBarry Smith PetscFunctionReturn(0); 52236bd2089SBarry Smith } 52336bd2089SBarry Smith 52436bd2089SBarry Smith /* 52536bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 52636bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52736bd2089SBarry Smith */ 528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 529a30f8f8cSSatish Balay { 5300880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 531f15d580aSBarry Smith const MatScalar *value; 532f15d580aSBarry Smith MatScalar *barray =baij->barray; 533ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 536476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 537476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5380880e062SHong Zhang 539a30f8f8cSSatish Balay PetscFunctionBegin; 5400880e062SHong Zhang if (!barray) { 541785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5420880e062SHong Zhang baij->barray = barray; 5430880e062SHong Zhang } 5440880e062SHong Zhang 5450880e062SHong Zhang if (roworiented) { 5460880e062SHong Zhang stepval = (n-1)*bs; 5470880e062SHong Zhang } else { 5480880e062SHong Zhang stepval = (m-1)*bs; 5490880e062SHong Zhang } 5500880e062SHong Zhang for (i=0; i<m; i++) { 5510880e062SHong Zhang if (im[i] < 0) continue; 552cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5530880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5540880e062SHong Zhang row = im[i] - rstart; 5550880e062SHong Zhang for (j=0; j<n; j++) { 556f3f98c53SJed Brown if (im[i] > in[j]) { 557f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 558e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 559f3f98c53SJed Brown } 5600880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5610880e062SHong Zhang if ((roworiented) && (n == 1)) { 562f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5630880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 564f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5650880e062SHong Zhang } else { /* Here a copy is required */ 5660880e062SHong Zhang if (roworiented) { 5670880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5680880e062SHong Zhang } else { 5690880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5700880e062SHong Zhang } 5710880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5720880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5730880e062SHong Zhang *barray++ = *value++; 5740880e062SHong Zhang } 5750880e062SHong Zhang } 5760880e062SHong Zhang barray -=bs2; 5770880e062SHong Zhang } 5780880e062SHong Zhang 5790880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5800880e062SHong Zhang col = in[j] - cstart; 58136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 58226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 583cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5840880e062SHong Zhang else { 5850880e062SHong Zhang if (mat->was_assembled) { 5860880e062SHong Zhang if (!baij->colmap) { 587ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5880880e062SHong Zhang } 5890880e062SHong Zhang 5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5921302d50aSBarry Smith { PetscInt data; 5930880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 594e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5950880e062SHong Zhang } 5960880e062SHong Zhang #else 597e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 5980880e062SHong Zhang #endif 5990880e062SHong Zhang #endif 6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6010880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 6020880e062SHong Zhang col = (col - 1)/bs; 6030880e062SHong Zhang #else 6040880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 6050880e062SHong Zhang #endif 6060880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 607ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 6080880e062SHong Zhang col = in[j]; 6090880e062SHong Zhang } 61026fbe8dcSKarl Rupp } else col = in[j]; 61136bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 6120880e062SHong Zhang } 6130880e062SHong Zhang } 6140880e062SHong Zhang } else { 615bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6160880e062SHong Zhang if (!baij->donotstash) { 6170880e062SHong Zhang if (roworiented) { 6180880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6190880e062SHong Zhang } else { 6200880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6210880e062SHong Zhang } 6220880e062SHong Zhang } 6230880e062SHong Zhang } 6240880e062SHong Zhang } 6250880e062SHong Zhang PetscFunctionReturn(0); 626a30f8f8cSSatish Balay } 627a30f8f8cSSatish Balay 6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 629a30f8f8cSSatish Balay { 630f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6316849ba73SBarry Smith PetscErrorCode ierr; 632d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 633d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay PetscFunctionBegin; 636a30f8f8cSSatish Balay for (i=0; i<m; i++) { 637e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 638e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 639a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 640a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 641a30f8f8cSSatish Balay for (j=0; j<n; j++) { 642e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 643e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 644a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 645a30f8f8cSSatish Balay col = idxn[j] - bscstart; 646c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647a30f8f8cSSatish Balay } else { 648a30f8f8cSSatish Balay if (!baij->colmap) { 649ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 652a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 653a30f8f8cSSatish Balay data--; 654a30f8f8cSSatish Balay #else 655a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 656a30f8f8cSSatish Balay #endif 657a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 658a30f8f8cSSatish Balay else { 659a30f8f8cSSatish Balay col = data + idxn[j]%bs; 660e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 661a30f8f8cSSatish Balay } 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay } 664f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 665a30f8f8cSSatish Balay } 666a30f8f8cSSatish Balay PetscFunctionReturn(0); 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay 669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 670a30f8f8cSSatish Balay { 671a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 672dfbe8321SBarry Smith PetscErrorCode ierr; 673a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay PetscFunctionBegin; 676a30f8f8cSSatish Balay if (baij->size == 1) { 677a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 678a30f8f8cSSatish Balay } else { 679a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 680785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 681a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 682a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 683a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 684a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 685b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6868f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 687a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6880b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6890b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6900b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6910b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 692899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 693d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6940b8dc8d2SHong Zhang MatScalar *v; 6950b8dc8d2SHong Zhang 696dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 697580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 6980b8dc8d2SHong Zhang /* Amat */ 6990b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 7000b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7010b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7020b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 7030b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7040b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 7050b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7060b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7070b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7080b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7090b8dc8d2SHong Zhang /* non-diagonal block */ 7100b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7110b8dc8d2SHong Zhang } 7120b8dc8d2SHong Zhang } 7130b8dc8d2SHong Zhang } 71451f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7150b8dc8d2SHong Zhang } 7160b8dc8d2SHong Zhang /* Bmat */ 7170b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7180b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7190b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7200b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7210b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7220b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7230b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7240b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7250b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7260b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7270b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7280b8dc8d2SHong Zhang } 7290b8dc8d2SHong Zhang } 7300b8dc8d2SHong Zhang } 73151f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7320b8dc8d2SHong Zhang } 733b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7340b8dc8d2SHong Zhang *norm = 0.0; 735d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7360b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7370b8dc8d2SHong Zhang } 73874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 739f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 740a30f8f8cSSatish Balay } 741a30f8f8cSSatish Balay PetscFunctionReturn(0); 742a30f8f8cSSatish Balay } 743a30f8f8cSSatish Balay 744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 745a30f8f8cSSatish Balay { 746a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 7481302d50aSBarry Smith PetscInt nstash,reallocs; 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay PetscFunctionBegin; 75126fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 752a30f8f8cSSatish Balay 753d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7541e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7561e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7581e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 759a30f8f8cSSatish Balay PetscFunctionReturn(0); 760a30f8f8cSSatish Balay } 761a30f8f8cSSatish Balay 762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 763a30f8f8cSSatish Balay { 764a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 765a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7666849ba73SBarry Smith PetscErrorCode ierr; 76713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 768e44c0bd4SBarry Smith PetscInt *row,*col; 769ace3abfcSBarry Smith PetscBool other_disassembled; 77013f74950SBarry Smith PetscMPIInt n; 771ace3abfcSBarry Smith PetscBool r1,r2,r3; 772a30f8f8cSSatish Balay MatScalar *val; 773a30f8f8cSSatish Balay 77491c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 775a30f8f8cSSatish Balay PetscFunctionBegin; 7764cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 777a30f8f8cSSatish Balay while (1) { 778a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 779a30f8f8cSSatish Balay if (!flg) break; 780a30f8f8cSSatish Balay 781a30f8f8cSSatish Balay for (i=0; i<n;) { 782a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 78326fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 78426fbe8dcSKarl Rupp if (row[j] != rstart) break; 78526fbe8dcSKarl Rupp } 786a30f8f8cSSatish Balay if (j < n) ncols = j-i; 787a30f8f8cSSatish Balay else ncols = n-i; 788a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7894b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 790a30f8f8cSSatish Balay i = j; 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay } 793a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 794a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 795a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 796a30f8f8cSSatish Balay restore the original flags */ 797a30f8f8cSSatish Balay r1 = baij->roworiented; 798a30f8f8cSSatish Balay r2 = a->roworiented; 79991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 80026fbe8dcSKarl Rupp 801a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 802a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 80326fbe8dcSKarl Rupp 80491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 805a30f8f8cSSatish Balay while (1) { 806a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 807a30f8f8cSSatish Balay if (!flg) break; 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay for (i=0; i<n;) { 810a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 81126fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 81226fbe8dcSKarl Rupp if (row[j] != rstart) break; 81326fbe8dcSKarl Rupp } 814a30f8f8cSSatish Balay if (j < n) ncols = j-i; 815a30f8f8cSSatish Balay else ncols = n-i; 8164b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 817a30f8f8cSSatish Balay i = j; 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 82126fbe8dcSKarl Rupp 822a30f8f8cSSatish Balay baij->roworiented = r1; 823a30f8f8cSSatish Balay a->roworiented = r2; 82426fbe8dcSKarl Rupp 82591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 829a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 830a30f8f8cSSatish Balay 831a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 832a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 833a30f8f8cSSatish Balay /* 834a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 835a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 836a30f8f8cSSatish Balay */ 837a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 838b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 839a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 840ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 841a30f8f8cSSatish Balay } 842a30f8f8cSSatish Balay } 843a30f8f8cSSatish Balay 844a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 84540781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 848a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 849a30f8f8cSSatish Balay 85074ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 85126fbe8dcSKarl Rupp 852a30f8f8cSSatish Balay baij->rowvalues = 0; 8534f9cfa9eSBarry Smith 8544f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8554f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 856e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 857b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 858e56f5c9eSBarry Smith } 859a30f8f8cSSatish Balay PetscFunctionReturn(0); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay 862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8639804daf3SBarry Smith #include <petscdraw.h> 8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 865a30f8f8cSSatish Balay { 866a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 867dfbe8321SBarry Smith PetscErrorCode ierr; 868d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8697da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 870ace3abfcSBarry Smith PetscBool iascii,isdraw; 871b0a32e0cSBarry Smith PetscViewer sviewer; 872f3ef73ceSBarry Smith PetscViewerFormat format; 873a30f8f8cSSatish Balay 874a30f8f8cSSatish Balay PetscFunctionBegin; 875251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 876251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 87732077d6dSBarry Smith if (iascii) { 878b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 879456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 880a30f8f8cSSatish Balay MatInfo info; 881ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 882a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8831575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 884b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 885a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 886e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 888e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 889b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8901575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 89107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 893a30f8f8cSSatish Balay PetscFunctionReturn(0); 894fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 89577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 896a30f8f8cSSatish Balay PetscFunctionReturn(0); 897c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 898c1490034SHong Zhang PetscFunctionReturn(0); 899a30f8f8cSSatish Balay } 900a30f8f8cSSatish Balay } 901a30f8f8cSSatish Balay 902a30f8f8cSSatish Balay if (isdraw) { 903b0a32e0cSBarry Smith PetscDraw draw; 904ace3abfcSBarry Smith PetscBool isnull; 905b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 90645f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 90745f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 908a30f8f8cSSatish Balay } 909a30f8f8cSSatish Balay 9107da1fb6eSBarry Smith { 911a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 912a30f8f8cSSatish Balay Mat A; 91365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 91465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 915d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 916a30f8f8cSSatish Balay MatScalar *a; 9173e219373SBarry Smith const char *matname; 918a30f8f8cSSatish Balay 919f204ca49SKris Buschelman /* Should this be the same type as mat? */ 920ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 921a30f8f8cSSatish Balay if (!rank) { 922f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 923a30f8f8cSSatish Balay } else { 924f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 925a30f8f8cSSatish Balay } 926f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9270298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9282b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 930a30f8f8cSSatish Balay 931a30f8f8cSSatish Balay /* copy over the A part */ 93265d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 933a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 934785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 937e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 93826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 939a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 940e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 941a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 942dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 94326fbe8dcSKarl Rupp col++; 94426fbe8dcSKarl Rupp a += bs; 945a30f8f8cSSatish Balay } 946a30f8f8cSSatish Balay } 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay /* copy over the B part */ 94965d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 95065d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 951a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 952e9f7bc9eSHong Zhang 953e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 95426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 955a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 956a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 957a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 958799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 95926fbe8dcSKarl Rupp col++; 96026fbe8dcSKarl Rupp a += bs; 961a30f8f8cSSatish Balay } 962a30f8f8cSSatish Balay } 963a30f8f8cSSatish Balay } 964a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 965a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 966a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 967a30f8f8cSSatish Balay /* 968a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 969b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 970a30f8f8cSSatish Balay */ 9713f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 972ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9733e219373SBarry Smith if (!rank) { 974ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 975383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 976a30f8f8cSSatish Balay } 9773f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9781575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9796bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay PetscFunctionReturn(0); 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay 984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 986d1654148SHong Zhang 987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 988a30f8f8cSSatish Balay { 989dfbe8321SBarry Smith PetscErrorCode ierr; 990ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 991a30f8f8cSSatish Balay 992a30f8f8cSSatish Balay PetscFunctionBegin; 993251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 994251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 995251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 996251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 997d1654148SHong Zhang if (iascii || isdraw || issocket) { 998a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 999d1654148SHong Zhang } else if (isbinary) { 1000d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1001a30f8f8cSSatish Balay } 1002a30f8f8cSSatish Balay PetscFunctionReturn(0); 1003a30f8f8cSSatish Balay } 1004a30f8f8cSSatish Balay 1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1006a30f8f8cSSatish Balay { 1007a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1008dfbe8321SBarry Smith PetscErrorCode ierr; 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay PetscFunctionBegin; 1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1012d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1013a30f8f8cSSatish Balay #endif 1014a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1015a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10166bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 10176bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 10196bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1020a30f8f8cSSatish Balay #else 102105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1022a30f8f8cSSatish Balay #endif 102305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 10246bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 10256bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 10266bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 10276bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 10286bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 10296bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 10306bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 10316bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 10325755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 103305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 103405b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 10356bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 10366bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 10376bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 103905b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1040a30f8f8cSSatish Balay #endif 104159ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 104259ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1043899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1044bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1045901853e0SKris Buschelman 1046dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1047bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1048bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1049bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1050d2c30c80SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 10526214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 10536214f412SHong Zhang #endif 1054d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1055d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr); 1056d24d4204SJose E. Roman #endif 1057b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1058b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1059a30f8f8cSSatish Balay PetscFunctionReturn(0); 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay 1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1063547795f9SHong Zhang { 1064547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1065547795f9SHong Zhang PetscErrorCode ierr; 1066eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 10676de40e93SBarry Smith PetscScalar *from; 10686de40e93SBarry Smith const PetscScalar *x; 1069547795f9SHong Zhang 1070547795f9SHong Zhang PetscFunctionBegin; 1071547795f9SHong Zhang /* diagonal part */ 1072547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1073547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1074547795f9SHong Zhang 1075547795f9SHong Zhang /* subdiagonal part */ 1076*a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1077547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1078547795f9SHong Zhang 1079547795f9SHong Zhang /* copy x into the vec slvec0 */ 1080547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 10816de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1082547795f9SHong Zhang 1083580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1084547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 10856de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1086547795f9SHong Zhang 1087547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1088547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1089547795f9SHong Zhang /* supperdiagonal part */ 1090547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1091547795f9SHong Zhang PetscFunctionReturn(0); 1092547795f9SHong Zhang } 1093547795f9SHong Zhang 1094dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1095a9d4b620SHong Zhang { 1096a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1097dfbe8321SBarry Smith PetscErrorCode ierr; 1098eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1099d9ca1df4SBarry Smith PetscScalar *from; 1100d9ca1df4SBarry Smith const PetscScalar *x; 1101a9d4b620SHong Zhang 1102a9d4b620SHong Zhang PetscFunctionBegin; 1103a9d4b620SHong Zhang /* diagonal part */ 1104a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1105fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1106a9d4b620SHong Zhang 1107a9d4b620SHong Zhang /* subdiagonal part */ 1108a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1109fc165ae2SBarry Smith 1110a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11111ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1112d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1113a9d4b620SHong Zhang 1114580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1115fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1116d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1117fc165ae2SBarry Smith 1118fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1119ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1120a9d4b620SHong Zhang /* supperdiagonal part */ 1121a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1122a9d4b620SHong Zhang PetscFunctionReturn(0); 1123a9d4b620SHong Zhang } 1124a9d4b620SHong Zhang 1125eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1126eb1ec7c1SStefano Zampini { 1127eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1128eb1ec7c1SStefano Zampini PetscErrorCode ierr; 1129eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1130eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1131eb1ec7c1SStefano Zampini const PetscScalar *x; 1132eb1ec7c1SStefano Zampini 1133eb1ec7c1SStefano Zampini PetscFunctionBegin; 1134eb1ec7c1SStefano Zampini /* diagonal part */ 1135eb1ec7c1SStefano Zampini ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1136eb1ec7c1SStefano Zampini ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1137eb1ec7c1SStefano Zampini 1138eb1ec7c1SStefano Zampini /* subdiagonal part */ 1139*a3234186SStefano Zampini if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name); 1140eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1141eb1ec7c1SStefano Zampini 1142eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 1143eb1ec7c1SStefano Zampini ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1144eb1ec7c1SStefano Zampini ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1145eb1ec7c1SStefano Zampini ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1146eb1ec7c1SStefano Zampini ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1147eb1ec7c1SStefano Zampini 1148eb1ec7c1SStefano Zampini ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1149eb1ec7c1SStefano Zampini ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1150eb1ec7c1SStefano Zampini ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1151eb1ec7c1SStefano Zampini 1152eb1ec7c1SStefano Zampini /* supperdiagonal part */ 1153eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1154eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1155eb1ec7c1SStefano Zampini } 1156eb1ec7c1SStefano Zampini 1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1158a30f8f8cSSatish Balay { 1159de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1162d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1163d9ca1df4SBarry Smith const PetscScalar *x; 1164a9d4b620SHong Zhang 1165a9d4b620SHong Zhang PetscFunctionBegin; 1166a9d4b620SHong Zhang /* diagonal part */ 1167a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 11682dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1169a9d4b620SHong Zhang 1170a9d4b620SHong Zhang /* subdiagonal part */ 1171a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1172a9d4b620SHong Zhang 1173a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11741ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1175d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1176580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 11771ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1178a9d4b620SHong Zhang 1179ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1180d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1181ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1182a9d4b620SHong Zhang 1183a9d4b620SHong Zhang /* supperdiagonal part */ 1184a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1185a9d4b620SHong Zhang PetscFunctionReturn(0); 1186a9d4b620SHong Zhang } 1187a9d4b620SHong Zhang 1188a30f8f8cSSatish Balay /* 1189a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1190a30f8f8cSSatish Balay diagonal block 1191a30f8f8cSSatish Balay */ 1192dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1193a30f8f8cSSatish Balay { 1194a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1195dfbe8321SBarry Smith PetscErrorCode ierr; 1196a30f8f8cSSatish Balay 1197a30f8f8cSSatish Balay PetscFunctionBegin; 1198e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1199a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1200a30f8f8cSSatish Balay PetscFunctionReturn(0); 1201a30f8f8cSSatish Balay } 1202a30f8f8cSSatish Balay 1203f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1204a30f8f8cSSatish Balay { 1205a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1206dfbe8321SBarry Smith PetscErrorCode ierr; 1207a30f8f8cSSatish Balay 1208a30f8f8cSSatish Balay PetscFunctionBegin; 1209f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1210f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12141302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1215a30f8f8cSSatish Balay { 1216d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1217d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1218d0d4cfc2SHong Zhang PetscErrorCode ierr; 1219d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1220d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1221899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1222d0d4cfc2SHong Zhang 1223a30f8f8cSSatish Balay PetscFunctionBegin; 1224e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1225d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1226d0d4cfc2SHong Zhang 1227d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1228d0d4cfc2SHong Zhang /* 1229d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1230d0d4cfc2SHong Zhang */ 1231d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1232d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1233d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1234d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1235d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 123626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1237d0d4cfc2SHong Zhang } 1238dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1239d0d4cfc2SHong Zhang } 1240d0d4cfc2SHong Zhang 1241e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1242d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1243d0d4cfc2SHong Zhang 1244d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1245d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1246d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1247d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1248d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1249d0d4cfc2SHong Zhang nztot = nzA + nzB; 1250d0d4cfc2SHong Zhang 1251d0d4cfc2SHong Zhang cmap = mat->garray; 1252d0d4cfc2SHong Zhang if (v || idx) { 1253d0d4cfc2SHong Zhang if (nztot) { 1254d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1255d0d4cfc2SHong Zhang PetscInt imark = -1; 1256d0d4cfc2SHong Zhang if (v) { 1257d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1258d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1259d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1260d0d4cfc2SHong Zhang else break; 1261d0d4cfc2SHong Zhang } 1262d0d4cfc2SHong Zhang imark = i; 1263d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1264d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1265d0d4cfc2SHong Zhang } 1266d0d4cfc2SHong Zhang if (idx) { 1267d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1268d0d4cfc2SHong Zhang if (imark > -1) { 1269d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1270d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1271d0d4cfc2SHong Zhang } 1272d0d4cfc2SHong Zhang } else { 1273d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 127426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1275d0d4cfc2SHong Zhang else break; 1276d0d4cfc2SHong Zhang } 1277d0d4cfc2SHong Zhang imark = i; 1278d0d4cfc2SHong Zhang } 1279d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1280d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1281d0d4cfc2SHong Zhang } 1282d0d4cfc2SHong Zhang } else { 1283d0d4cfc2SHong Zhang if (idx) *idx = 0; 1284d0d4cfc2SHong Zhang if (v) *v = 0; 1285d0d4cfc2SHong Zhang } 1286d0d4cfc2SHong Zhang } 1287d0d4cfc2SHong Zhang *nz = nztot; 1288d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1289d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1290a30f8f8cSSatish Balay PetscFunctionReturn(0); 1291a30f8f8cSSatish Balay } 1292a30f8f8cSSatish Balay 12931302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1294a30f8f8cSSatish Balay { 1295a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1296a30f8f8cSSatish Balay 1297a30f8f8cSSatish Balay PetscFunctionBegin; 1298e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1299a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1300a30f8f8cSSatish Balay PetscFunctionReturn(0); 1301a30f8f8cSSatish Balay } 1302a30f8f8cSSatish Balay 1303d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1304d0d4cfc2SHong Zhang { 1305d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1306d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1307d0d4cfc2SHong Zhang 1308d0d4cfc2SHong Zhang PetscFunctionBegin; 1309d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1310d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1311d0d4cfc2SHong Zhang } 1312d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1313d0d4cfc2SHong Zhang { 1314d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1316d0d4cfc2SHong Zhang 1317d0d4cfc2SHong Zhang PetscFunctionBegin; 1318d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1319d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1320d0d4cfc2SHong Zhang } 1321d0d4cfc2SHong Zhang 132299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 132399cafbc1SBarry Smith { 132499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 132599cafbc1SBarry Smith PetscErrorCode ierr; 132699cafbc1SBarry Smith 132799cafbc1SBarry Smith PetscFunctionBegin; 132899cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 132999cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 133099cafbc1SBarry Smith PetscFunctionReturn(0); 133199cafbc1SBarry Smith } 133299cafbc1SBarry Smith 133399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 133499cafbc1SBarry Smith { 133599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 133699cafbc1SBarry Smith PetscErrorCode ierr; 133799cafbc1SBarry Smith 133899cafbc1SBarry Smith PetscFunctionBegin; 133999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 134099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 134199cafbc1SBarry Smith PetscFunctionReturn(0); 134299cafbc1SBarry Smith } 134399cafbc1SBarry Smith 13447dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 134536032a97SHong Zhang Input: isrow - distributed(parallel), 134636032a97SHong Zhang iscol_local - locally owned (seq) 134736032a97SHong Zhang */ 134836032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 13498f46ffcaSHong Zhang { 13508f46ffcaSHong Zhang PetscErrorCode ierr; 13518f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 13528f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 135336032a97SHong Zhang 135436032a97SHong Zhang PetscFunctionBegin; 13558f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 13568f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 13571098a8e8SHong Zhang if (sz1 > sz2) { 13581098a8e8SHong Zhang *flg = PETSC_FALSE; 13591098a8e8SHong Zhang PetscFunctionReturn(0); 13601098a8e8SHong Zhang } 13618f46ffcaSHong Zhang 13628f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 13638f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13648f46ffcaSHong Zhang 13658f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 13668f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1367580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1368580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 13698f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 13708f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 13718f46ffcaSHong Zhang 13728f46ffcaSHong Zhang nmatch=0; 13738f46ffcaSHong Zhang k = 0; 13748f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 13758f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 13768f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13778f46ffcaSHong Zhang k = j; nmatch++; 13788f46ffcaSHong Zhang break; 13798f46ffcaSHong Zhang } 13808f46ffcaSHong Zhang } 13818f46ffcaSHong Zhang } 13828f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 13838f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 13848f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 13858f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 13861098a8e8SHong Zhang if (nmatch < sz1) { 13871098a8e8SHong Zhang *flg = PETSC_FALSE; 13881098a8e8SHong Zhang } else { 13891098a8e8SHong Zhang *flg = PETSC_TRUE; 13901098a8e8SHong Zhang } 139136032a97SHong Zhang PetscFunctionReturn(0); 13928f46ffcaSHong Zhang } 139336032a97SHong Zhang 13947dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 139536032a97SHong Zhang { 139636032a97SHong Zhang PetscErrorCode ierr; 139736032a97SHong Zhang IS iscol_local; 139836032a97SHong Zhang PetscInt csize; 139936032a97SHong Zhang PetscBool isequal; 140036032a97SHong Zhang 140136032a97SHong Zhang PetscFunctionBegin; 140236032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 140336032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 140436032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 140536032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 140636032a97SHong Zhang } else { 140736032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 140836032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 140936032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 14108f46ffcaSHong Zhang } 14118f46ffcaSHong Zhang 14127dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 14137dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 14148f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 14158f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 14168f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 14178f46ffcaSHong Zhang } 14188f46ffcaSHong Zhang PetscFunctionReturn(0); 14198f46ffcaSHong Zhang } 14208f46ffcaSHong Zhang 1421dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1422a30f8f8cSSatish Balay { 1423a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1424dfbe8321SBarry Smith PetscErrorCode ierr; 1425a30f8f8cSSatish Balay 1426a30f8f8cSSatish Balay PetscFunctionBegin; 1427a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1428a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1429a30f8f8cSSatish Balay PetscFunctionReturn(0); 1430a30f8f8cSSatish Balay } 1431a30f8f8cSSatish Balay 1432dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1433a30f8f8cSSatish Balay { 1434a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1435a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1436dfbe8321SBarry Smith PetscErrorCode ierr; 14373966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1438a30f8f8cSSatish Balay 1439a30f8f8cSSatish Balay PetscFunctionBegin; 1440d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 144126fbe8dcSKarl Rupp 1442a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 144326fbe8dcSKarl Rupp 1444a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1445a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 144626fbe8dcSKarl Rupp 1447a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 144826fbe8dcSKarl Rupp 1449a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1450a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1451a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1452a30f8f8cSSatish Balay info->nz_used = isend[0]; 1453a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1454a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1455a30f8f8cSSatish Balay info->memory = isend[3]; 1456a30f8f8cSSatish Balay info->mallocs = isend[4]; 1457a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14583966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 145926fbe8dcSKarl Rupp 1460a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1461a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1462a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1463a30f8f8cSSatish Balay info->memory = irecv[3]; 1464a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1465a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14663966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 146726fbe8dcSKarl Rupp 1468a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1469a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1470a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1471a30f8f8cSSatish Balay info->memory = irecv[3]; 1472a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1473f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1474a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1475a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1476a30f8f8cSSatish Balay info->factor_mallocs = 0; 1477a30f8f8cSSatish Balay PetscFunctionReturn(0); 1478a30f8f8cSSatish Balay } 1479a30f8f8cSSatish Balay 1480ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1481a30f8f8cSSatish Balay { 1482a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1483d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1484dfbe8321SBarry Smith PetscErrorCode ierr; 1485a30f8f8cSSatish Balay 1486a30f8f8cSSatish Balay PetscFunctionBegin; 1487e98b92d7SKris Buschelman switch (op) { 1488512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1489e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 149028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1491a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1492c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1493e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 149443674050SBarry Smith MatCheckPreallocated(A,1); 14954e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14964e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1497e98b92d7SKris Buschelman break; 1498e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 149943674050SBarry Smith MatCheckPreallocated(A,1); 15004e0d8c25SBarry Smith a->roworiented = flg; 150126fbe8dcSKarl Rupp 15024e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15034e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1504e98b92d7SKris Buschelman break; 15054e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1506071fcb05SBarry Smith case MAT_SORTED_FULL: 1507290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1508e98b92d7SKris Buschelman break; 1509e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15104e0d8c25SBarry Smith a->donotstash = flg; 1511e98b92d7SKris Buschelman break; 1512e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 15134e0d8c25SBarry Smith a->ht_flag = flg; 1514e98b92d7SKris Buschelman break; 15159a4540c5SBarry Smith case MAT_HERMITIAN: 151643674050SBarry Smith MatCheckPreallocated(A,1); 1517eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15180f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1519eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1520547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1521eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1522eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1523eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1524eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 1525eb1ec7c1SStefano Zampini } 15260f2140c7SStefano Zampini #endif 1527eeffb40dSHong Zhang break; 1528ffa07934SHong Zhang case MAT_SPD: 152977e54ba9SKris Buschelman case MAT_SYMMETRIC: 153043674050SBarry Smith MatCheckPreallocated(A,1); 1531eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1532eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1533eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1534eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1535eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1536eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1537eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1538eb1ec7c1SStefano Zampini } 1539eb1ec7c1SStefano Zampini #endif 1540eeffb40dSHong Zhang break; 154177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 154243674050SBarry Smith MatCheckPreallocated(A,1); 1543eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1544eeffb40dSHong Zhang break; 15459a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1546e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1547290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 154877e54ba9SKris Buschelman break; 1549d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 15504e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1551d0d4cfc2SHong Zhang break; 1552d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 15534e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1554d0d4cfc2SHong Zhang break; 1555d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 15564e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1557d0d4cfc2SHong Zhang break; 1558e98b92d7SKris Buschelman default: 1559e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1560a30f8f8cSSatish Balay } 1561a30f8f8cSSatish Balay PetscFunctionReturn(0); 1562a30f8f8cSSatish Balay } 1563a30f8f8cSSatish Balay 1564fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1565a30f8f8cSSatish Balay { 1566dfbe8321SBarry Smith PetscErrorCode ierr; 15676e111a19SKarl Rupp 1568a30f8f8cSSatish Balay PetscFunctionBegin; 1569cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1570999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1571cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1572cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1573fc4dec0aSBarry Smith } 15748115998fSBarry Smith PetscFunctionReturn(0); 1575a30f8f8cSSatish Balay } 1576a30f8f8cSSatish Balay 1577dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1578a30f8f8cSSatish Balay { 1579a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1580a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1581dfbe8321SBarry Smith PetscErrorCode ierr; 15825e90f9d9SHong Zhang PetscInt nv,m,n; 1583ace3abfcSBarry Smith PetscBool flg; 1584a30f8f8cSSatish Balay 1585a30f8f8cSSatish Balay PetscFunctionBegin; 1586a30f8f8cSSatish Balay if (ll != rr) { 1587b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1588e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1589a30f8f8cSSatish Balay } 1590b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1591b3bf805bSHong Zhang 15925e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1593e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1594b3bf805bSHong Zhang 15955e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1596e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 15975e90f9d9SHong Zhang 1598ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 15995e90f9d9SHong Zhang 16005e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 16010298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16025e90f9d9SHong Zhang 16035e90f9d9SHong Zhang /* scale the diagonal part */ 1604a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1605a30f8f8cSSatish Balay 16065e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1607ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16080298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1609a30f8f8cSSatish Balay PetscFunctionReturn(0); 1610a30f8f8cSSatish Balay } 1611a30f8f8cSSatish Balay 1612dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1613a30f8f8cSSatish Balay { 1614f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1615dfbe8321SBarry Smith PetscErrorCode ierr; 1616a30f8f8cSSatish Balay 1617a30f8f8cSSatish Balay PetscFunctionBegin; 1618a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1619a30f8f8cSSatish Balay PetscFunctionReturn(0); 1620a30f8f8cSSatish Balay } 1621a30f8f8cSSatish Balay 16226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1623a30f8f8cSSatish Balay 1624ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1625a30f8f8cSSatish Balay { 1626a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1627a30f8f8cSSatish Balay Mat a,b,c,d; 1628ace3abfcSBarry Smith PetscBool flg; 1629dfbe8321SBarry Smith PetscErrorCode ierr; 1630a30f8f8cSSatish Balay 1631a30f8f8cSSatish Balay PetscFunctionBegin; 1632a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1633a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1634a30f8f8cSSatish Balay 1635a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1636abc0a331SBarry Smith if (flg) { 1637a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1638a30f8f8cSSatish Balay } 1639b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1640a30f8f8cSSatish Balay PetscFunctionReturn(0); 1641a30f8f8cSSatish Balay } 1642a30f8f8cSSatish Balay 16433c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 16443c896bc6SHong Zhang { 16453c896bc6SHong Zhang PetscErrorCode ierr; 16464c7a3774SStefano Zampini PetscBool isbaij; 16473c896bc6SHong Zhang 16483c896bc6SHong Zhang PetscFunctionBegin; 16494c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 16504c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 16513c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16523c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1653d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 16543c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1655d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 16563c896bc6SHong Zhang } else { 16574c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 16584c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 16594c7a3774SStefano Zampini 16603c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 16613c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 16623c896bc6SHong Zhang } 1663cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 16643c896bc6SHong Zhang PetscFunctionReturn(0); 16653c896bc6SHong Zhang } 16663c896bc6SHong Zhang 16674994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1668273d9f13SBarry Smith { 1669dfbe8321SBarry Smith PetscErrorCode ierr; 1670273d9f13SBarry Smith 1671273d9f13SBarry Smith PetscFunctionBegin; 1672535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1673273d9f13SBarry Smith PetscFunctionReturn(0); 1674273d9f13SBarry Smith } 1675a5e6ed63SBarry Smith 16764fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 16774fe895cdSHong Zhang { 16784fe895cdSHong Zhang PetscErrorCode ierr; 16794fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 16804fe895cdSHong Zhang PetscBLASInt bnz,one=1; 16814fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 16824fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 16834fe895cdSHong Zhang 16844fe895cdSHong Zhang PetscFunctionBegin; 16854fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 16864fe895cdSHong Zhang PetscScalar alpha = a; 16874fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 16884fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1689c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 16908b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 16914fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 16924fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1693c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 16948b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1695a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1696ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1697ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1698ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1699ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 17004fe895cdSHong Zhang } else { 17014de5dceeSHong Zhang Mat B; 17024de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 17034de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1704d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 17054de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 17064de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 17074de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 17084de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 17094de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 17104de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 17114de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 17124de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 17134de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 17144de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 17154de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 17164de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 171728be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 17184de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 17194de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1720d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 17214de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 17224fe895cdSHong Zhang } 17234fe895cdSHong Zhang PetscFunctionReturn(0); 17244fe895cdSHong Zhang } 17254fe895cdSHong Zhang 17267dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1727a5e6ed63SBarry Smith { 17286849ba73SBarry Smith PetscErrorCode ierr; 17291302d50aSBarry Smith PetscInt i; 1730afebec48SHong Zhang PetscBool flg; 1731a5e6ed63SBarry Smith 17326849ba73SBarry Smith PetscFunctionBegin; 17337dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1734a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1735a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1736afebec48SHong Zhang if (!flg) { 1737b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1738a5e6ed63SBarry Smith } 17394dcd73b1SHong Zhang } 1740a5e6ed63SBarry Smith PetscFunctionReturn(0); 1741a5e6ed63SBarry Smith } 1742a5e6ed63SBarry Smith 17437d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 17447d68702bSBarry Smith { 17457d68702bSBarry Smith PetscErrorCode ierr; 17467d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 17476f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 17487d68702bSBarry Smith 17497d68702bSBarry Smith PetscFunctionBegin; 17506f33a894SBarry Smith if (!Y->preallocated) { 17517d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 17526f33a894SBarry Smith } else if (!aij->nz) { 1753b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17546f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1755b83222d8SBarry Smith aij->nonew = nonew; 17567d68702bSBarry Smith } 17577d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 17587d68702bSBarry Smith PetscFunctionReturn(0); 17597d68702bSBarry Smith } 17607d68702bSBarry Smith 17613b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 17623b49f96aSBarry Smith { 17633b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 17643b49f96aSBarry Smith PetscErrorCode ierr; 17653b49f96aSBarry Smith 17663b49f96aSBarry Smith PetscFunctionBegin; 17673b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 17683b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 17693b49f96aSBarry Smith if (d) { 17703b49f96aSBarry Smith PetscInt rstart; 17713b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 17723b49f96aSBarry Smith *d += rstart/A->rmap->bs; 17733b49f96aSBarry Smith 17743b49f96aSBarry Smith } 17753b49f96aSBarry Smith PetscFunctionReturn(0); 17763b49f96aSBarry Smith } 17773b49f96aSBarry Smith 1778a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1779a5b7ff6bSBarry Smith { 1780a5b7ff6bSBarry Smith PetscFunctionBegin; 1781a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 1782a5b7ff6bSBarry Smith PetscFunctionReturn(0); 1783a5b7ff6bSBarry Smith } 17843b49f96aSBarry Smith 1785a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 17863964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1787a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1788a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1789a9d4b620SHong Zhang MatMult_MPISBAIJ, 179097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1791431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1792431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1793a30f8f8cSSatish Balay 0, 1794a30f8f8cSSatish Balay 0, 1795a30f8f8cSSatish Balay 0, 179697304618SKris Buschelman /* 10*/ 0, 1797a30f8f8cSSatish Balay 0, 1798a30f8f8cSSatish Balay 0, 179941f059aeSBarry Smith MatSOR_MPISBAIJ, 1800a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 180197304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1802a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1803a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1804a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1805a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 180697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1807a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1808a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1809a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1810d519adbfSMatthew Knepley /* 24*/ 0, 1811a30f8f8cSSatish Balay 0, 1812a30f8f8cSSatish Balay 0, 1813a30f8f8cSSatish Balay 0, 1814a30f8f8cSSatish Balay 0, 18154994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1816b5df2d14SHong Zhang 0, 1817a30f8f8cSSatish Balay 0, 1818a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1819a30f8f8cSSatish Balay 0, 1820d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1821a30f8f8cSSatish Balay 0, 1822a30f8f8cSSatish Balay 0, 1823a30f8f8cSSatish Balay 0, 1824a30f8f8cSSatish Balay 0, 1825d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18267dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1827d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1828a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18293c896bc6SHong Zhang MatCopy_MPISBAIJ, 1830d519adbfSMatthew Knepley /* 44*/ 0, 1831a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18327d68702bSBarry Smith MatShift_MPISBAIJ, 1833a30f8f8cSSatish Balay 0, 1834a30f8f8cSSatish Balay 0, 1835f73d5cc4SBarry Smith /* 49*/ 0, 1836a30f8f8cSSatish Balay 0, 1837a30f8f8cSSatish Balay 0, 1838a30f8f8cSSatish Balay 0, 1839a30f8f8cSSatish Balay 0, 1840d519adbfSMatthew Knepley /* 54*/ 0, 1841a30f8f8cSSatish Balay 0, 1842a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1843a30f8f8cSSatish Balay 0, 1844a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18457dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1846a30f8f8cSSatish Balay 0, 1847a30f8f8cSSatish Balay 0, 1848357abbc8SBarry Smith 0, 184924d5174aSHong Zhang 0, 1850d519adbfSMatthew Knepley /* 64*/ 0, 185124d5174aSHong Zhang 0, 185224d5174aSHong Zhang 0, 185324d5174aSHong Zhang 0, 185424d5174aSHong Zhang 0, 1855d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 185624d5174aSHong Zhang 0, 185728d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 185897304618SKris Buschelman 0, 185997304618SKris Buschelman 0, 1860d519adbfSMatthew Knepley /* 74*/ 0, 186197304618SKris Buschelman 0, 186297304618SKris Buschelman 0, 186397304618SKris Buschelman 0, 186497304618SKris Buschelman 0, 1865d519adbfSMatthew Knepley /* 79*/ 0, 186697304618SKris Buschelman 0, 186797304618SKris Buschelman 0, 186897304618SKris Buschelman 0, 18695bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1870d519adbfSMatthew Knepley /* 84*/ 0, 1871865e5f61SKris Buschelman 0, 1872865e5f61SKris Buschelman 0, 1873865e5f61SKris Buschelman 0, 1874865e5f61SKris Buschelman 0, 1875d519adbfSMatthew Knepley /* 89*/ 0, 1876865e5f61SKris Buschelman 0, 1877865e5f61SKris Buschelman 0, 1878865e5f61SKris Buschelman 0, 1879865e5f61SKris Buschelman 0, 1880d519adbfSMatthew Knepley /* 94*/ 0, 1881865e5f61SKris Buschelman 0, 1882865e5f61SKris Buschelman 0, 188399cafbc1SBarry Smith 0, 188499cafbc1SBarry Smith 0, 1885d519adbfSMatthew Knepley /* 99*/ 0, 188699cafbc1SBarry Smith 0, 188799cafbc1SBarry Smith 0, 188899cafbc1SBarry Smith 0, 188999cafbc1SBarry Smith 0, 1890d519adbfSMatthew Knepley /*104*/ 0, 189199cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1892d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1893d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 189495936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 189595936485SShri Abhyankar /*109*/ 0, 189695936485SShri Abhyankar 0, 189795936485SShri Abhyankar 0, 189895936485SShri Abhyankar 0, 18993b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 190095936485SShri Abhyankar /*114*/ 0, 190195936485SShri Abhyankar 0, 190295936485SShri Abhyankar 0, 190395936485SShri Abhyankar 0, 190495936485SShri Abhyankar 0, 190595936485SShri Abhyankar /*119*/ 0, 190695936485SShri Abhyankar 0, 190795936485SShri Abhyankar 0, 19083964eb88SJed Brown 0, 19093964eb88SJed Brown 0, 19103964eb88SJed Brown /*124*/ 0, 19113964eb88SJed Brown 0, 19123964eb88SJed Brown 0, 19133964eb88SJed Brown 0, 19143964eb88SJed Brown 0, 19153964eb88SJed Brown /*129*/ 0, 19163964eb88SJed Brown 0, 19173964eb88SJed Brown 0, 19183964eb88SJed Brown 0, 19193964eb88SJed Brown 0, 19203964eb88SJed Brown /*134*/ 0, 19213964eb88SJed Brown 0, 19223964eb88SJed Brown 0, 19233964eb88SJed Brown 0, 19243964eb88SJed Brown 0, 192546533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1926f9426fe0SMark Adams 0, 192759f5e6ceSHong Zhang 0, 192859f5e6ceSHong Zhang 0, 192959f5e6ceSHong Zhang 0, 193059f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 193199cafbc1SBarry Smith }; 1932a30f8f8cSSatish Balay 1933b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1934a23d5eceSKris Buschelman { 1935476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 1936dfbe8321SBarry Smith PetscErrorCode ierr; 1937535b19f3SBarry Smith PetscInt i,mbs,Mbs; 19385d2a9ed1SStefano Zampini PetscMPIInt size; 1939a23d5eceSKris Buschelman 1940a23d5eceSKris Buschelman PetscFunctionBegin; 194133d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 194226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 194326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1944e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1945476417e5SBarry Smith if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N); 1946476417e5SBarry Smith if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n); 1947899cda47SBarry Smith 1948d0f46423SBarry Smith mbs = B->rmap->n/bs; 1949d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1950c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1951a23d5eceSKris Buschelman 1952d0f46423SBarry Smith B->rmap->bs = bs; 1953a23d5eceSKris Buschelman b->bs2 = bs*bs; 1954a23d5eceSKris Buschelman b->mbs = mbs; 1955a23d5eceSKris Buschelman b->Mbs = Mbs; 1956de64b629SHong Zhang b->nbs = B->cmap->n/bs; 1957de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 1958a23d5eceSKris Buschelman 1959a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1960d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1961a23d5eceSKris Buschelman } 1962d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1963d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1964a23d5eceSKris Buschelman 1965d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1966d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1967a23d5eceSKris Buschelman 1968cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 1969cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 1970cb7b82ddSBarry Smith #else 1971cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 1972cb7b82ddSBarry Smith #endif 1973cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 1974cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 1975cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 1976cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 1977cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 1978cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 1979cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 1980cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 1981cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 1982cb7b82ddSBarry Smith 1983cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 19845d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1985cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 1986cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 19875d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 1988cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1989cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1990cb7b82ddSBarry Smith 1991526dfc15SBarry Smith if (!B->preallocated) { 1992f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1993d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 19949c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 19953bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1996ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1997526dfc15SBarry Smith } 1998a23d5eceSKris Buschelman 1999526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2000526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 200126fbe8dcSKarl Rupp 2002526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2003cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2004cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2005a23d5eceSKris Buschelman PetscFunctionReturn(0); 2006a23d5eceSKris Buschelman } 2007a23d5eceSKris Buschelman 2008dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2009dfb205c3SBarry Smith { 201002106b30SBarry Smith PetscInt m,rstart,cend; 20110cd7f59aSBarry Smith PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0; 2012dfb205c3SBarry Smith const PetscInt *JJ =0; 2013dfb205c3SBarry Smith PetscScalar *values=0; 2014bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 2015dfb205c3SBarry Smith PetscErrorCode ierr; 20163bd0feecSPierre Jolivet PetscBool nooffprocentries; 2017dfb205c3SBarry Smith 2018dfb205c3SBarry Smith PetscFunctionBegin; 2019ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2020dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2021dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2022dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2023dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2024e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2025dfb205c3SBarry Smith m = B->rmap->n/bs; 2026dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2027dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2028dfb205c3SBarry Smith 2029dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2030dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2031dfb205c3SBarry Smith for (i=0; i<m; i++) { 2032dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2033dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 20340cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2035dfb205c3SBarry Smith JJ = jj + ii[i]; 20360cd7f59aSBarry Smith bd = 0; 2037dfb205c3SBarry Smith for (j=0; j<nz; j++) { 20380cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2039dfb205c3SBarry Smith JJ++; 20400cd7f59aSBarry Smith bd++; 2041dfb205c3SBarry Smith } 2042dfb205c3SBarry Smith d = 0; 2043dfb205c3SBarry Smith for (; j<nz; j++) { 2044dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2045dfb205c3SBarry Smith d++; 2046dfb205c3SBarry Smith } 2047dfb205c3SBarry Smith d_nnz[i] = d; 20480cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20490cd7f59aSBarry Smith nz = nz - bd; 20500cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2051dfb205c3SBarry Smith } 2052dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2053bb80cfbbSStefano Zampini ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2054dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2055dfb205c3SBarry Smith 2056dfb205c3SBarry Smith values = (PetscScalar*)V; 2057dfb205c3SBarry Smith if (!values) { 2058580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2059dfb205c3SBarry Smith } 2060dfb205c3SBarry Smith for (i=0; i<m; i++) { 2061dfb205c3SBarry Smith PetscInt row = i + rstart; 2062dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2063dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2064bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2065dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2066dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2067bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2068bb80cfbbSStefano Zampini PetscInt j; 20690cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 20700cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 20710cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 20720cd7f59aSBarry Smith } 20730cd7f59aSBarry Smith } 2074dfb205c3SBarry Smith } 2075dfb205c3SBarry Smith 2076dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 20773bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 20783bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2079dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2080dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20813bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 20823bd0feecSPierre Jolivet 20837827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2084dfb205c3SBarry Smith PetscFunctionReturn(0); 2085dfb205c3SBarry Smith } 2086dfb205c3SBarry Smith 20870bad9183SKris Buschelman /*MC 2088fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2089828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2090828413b8SBarry Smith the matrix is stored. 2091828413b8SBarry Smith 2092828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2093828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 20940bad9183SKris Buschelman 20950bad9183SKris Buschelman Options Database Keys: 20960bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 20970bad9183SKris Buschelman 2098476417e5SBarry Smith Notes: 2099476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2100476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2101476417e5SBarry Smith 21020bad9183SKris Buschelman Level: beginner 21030bad9183SKris Buschelman 2104fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType 21050bad9183SKris Buschelman M*/ 21060bad9183SKris Buschelman 21078cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2108b5df2d14SHong Zhang { 2109b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2110dfbe8321SBarry Smith PetscErrorCode ierr; 211194ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2112b5df2d14SHong Zhang 2113b5df2d14SHong Zhang PetscFunctionBegin; 2114b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2115b0a32e0cSBarry Smith B->data = (void*)b; 2116b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2117b5df2d14SHong Zhang 2118b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2119b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2120b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2121b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 212226fbe8dcSKarl Rupp 2123ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2124ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2125b5df2d14SHong Zhang 2126b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2127854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2128b5df2d14SHong Zhang 2129b5df2d14SHong Zhang /* build cache for off array entries formed */ 2130ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 213126fbe8dcSKarl Rupp 2132b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21330298fd71SBarry Smith b->colmap = NULL; 21340298fd71SBarry Smith b->garray = NULL; 2135b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2136b5df2d14SHong Zhang 2137b5df2d14SHong Zhang /* stuff used in block assembly */ 2138b5df2d14SHong Zhang b->barray = 0; 2139b5df2d14SHong Zhang 2140b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2141b5df2d14SHong Zhang b->lvec = 0; 2142b5df2d14SHong Zhang b->Mvctx = 0; 214340781036SHong Zhang b->slvec0 = 0; 214440781036SHong Zhang b->slvec0b = 0; 214540781036SHong Zhang b->slvec1 = 0; 214640781036SHong Zhang b->slvec1a = 0; 214740781036SHong Zhang b->slvec1b = 0; 214840781036SHong Zhang b->sMvctx = 0; 2149b5df2d14SHong Zhang 2150b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2151b5df2d14SHong Zhang b->rowindices = 0; 2152b5df2d14SHong Zhang b->rowvalues = 0; 2153b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2154b5df2d14SHong Zhang 2155b5df2d14SHong Zhang /* hash table stuff */ 2156b5df2d14SHong Zhang b->ht = 0; 2157b5df2d14SHong Zhang b->hd = 0; 2158b5df2d14SHong Zhang b->ht_size = 0; 2159b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2160b5df2d14SHong Zhang b->ht_fact = 0; 2161b5df2d14SHong Zhang b->ht_total_ct = 0; 2162b5df2d14SHong Zhang b->ht_insert_ct = 0; 2163b5df2d14SHong Zhang 21647dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21657a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21667a868f3eSHong Zhang 216759ffdab8SBarry Smith b->in_loc = 0; 216859ffdab8SBarry Smith b->v_loc = 0; 216959ffdab8SBarry Smith b->n_loc = 0; 217094ae4db5SBarry Smith 2171bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2172bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2173bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2174bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 21756214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21766214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 21776214f412SHong Zhang #endif 2178d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2179d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr); 2180d24d4204SJose E. Roman #endif 218128d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 218228d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2183aa5a9175SDahai Guo 218423ce1328SBarry Smith B->symmetric = PETSC_TRUE; 218523ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 218623ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 218723ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 21889899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 2189eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 219013647f61SHong Zhang B->hermitian = PETSC_FALSE; 219113647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 2192eb1ec7c1SStefano Zampini #else 2193eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2194eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2195eb1ec7c1SStefano Zampini #endif 219613647f61SHong Zhang 219717667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 219894ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 219994ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 220094ae4db5SBarry Smith if (flg) { 220194ae4db5SBarry Smith PetscReal fact = 1.39; 220294ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 220394ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 220494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 220594ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 220694ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 220794ae4db5SBarry Smith } 220894ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2209b5df2d14SHong Zhang PetscFunctionReturn(0); 2210b5df2d14SHong Zhang } 2211b5df2d14SHong Zhang 2212209238afSKris Buschelman /*MC 2213002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2214209238afSKris Buschelman 2215209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2216209238afSKris Buschelman and MATMPISBAIJ otherwise. 2217209238afSKris Buschelman 2218209238afSKris Buschelman Options Database Keys: 2219209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2220209238afSKris Buschelman 2221209238afSKris Buschelman Level: beginner 2222209238afSKris Buschelman 2223209238afSKris Buschelman .seealso: MatCreateMPISBAIJ, MATSEQSBAIJ, MATMPISBAIJ 2224209238afSKris Buschelman M*/ 2225209238afSKris Buschelman 2226b5df2d14SHong Zhang /*@C 2227b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2228b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2229b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2230b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2231b5df2d14SHong Zhang 2232b5df2d14SHong Zhang Collective on Mat 2233b5df2d14SHong Zhang 2234b5df2d14SHong Zhang Input Parameters: 22351c4f3114SJed Brown + B - the matrix 2236bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2237bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2238b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2239b5df2d14SHong Zhang submatrix (same for all local rows) 2240b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22416d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22420298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 224395742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2244b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2245b5df2d14SHong Zhang submatrix (same for all local rows). 2246b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2247c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22480298fd71SBarry Smith (possibly different for each block row) or NULL. 2249b5df2d14SHong Zhang 2250b5df2d14SHong Zhang 2251b5df2d14SHong Zhang Options Database Keys: 2252a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2253b5df2d14SHong Zhang block calculations (much slower) 2254a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2255b5df2d14SHong Zhang 2256b5df2d14SHong Zhang Notes: 2257b5df2d14SHong Zhang 2258b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2259b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2260b5df2d14SHong Zhang 226149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 226249a6f317SBarry Smith 2263b5df2d14SHong Zhang Storage Information: 2264b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2265b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2266b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2267b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2268b5df2d14SHong Zhang 2269b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2270b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 22710298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2272b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2273b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2274b5df2d14SHong Zhang 2275aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2276aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2277aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2278aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2279aa95bbe8SBarry Smith 2280b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2281b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2282b5df2d14SHong Zhang 2283b5df2d14SHong Zhang .vb 2284b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2285a4b1a0f6SJed Brown -------------------------- 2286c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2287c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2288c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2289a4b1a0f6SJed Brown -------------------------- 2290b5df2d14SHong Zhang .ve 2291b5df2d14SHong Zhang 2292b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2293b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 22946d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 22956d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2296b5df2d14SHong Zhang 22976d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 22986d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2299c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2300c2fc9fa9SBarry Smith 2301b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2302b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2303b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2304b5df2d14SHong Zhang matrices. 2305b5df2d14SHong Zhang 2306b5df2d14SHong Zhang Level: intermediate 2307b5df2d14SHong Zhang 2308ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2309b5df2d14SHong Zhang @*/ 23107087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2311b5df2d14SHong Zhang { 23124ac538c5SBarry Smith PetscErrorCode ierr; 2313b5df2d14SHong Zhang 2314b5df2d14SHong Zhang PetscFunctionBegin; 23156ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 23166ba663aaSJed Brown PetscValidType(B,1); 23176ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 23184ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2319b5df2d14SHong Zhang PetscFunctionReturn(0); 2320b5df2d14SHong Zhang } 2321b5df2d14SHong Zhang 2322a30f8f8cSSatish Balay /*@C 232369b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2324a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2325a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2326a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2327a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2328a30f8f8cSSatish Balay 2329d083f849SBarry Smith Collective 2330a30f8f8cSSatish Balay 2331a30f8f8cSSatish Balay Input Parameters: 2332a30f8f8cSSatish Balay + comm - MPI communicator 2333bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2334bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2335a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2336a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2337a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2338a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2339a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2340a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2341a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2342a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2343a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2344a30f8f8cSSatish Balay submatrix (same for all local rows) 2345a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23466d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23470298fd71SBarry Smith (possibly different for each block block row) or NULL. 234895742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 234995742e49SBarry Smith set its value even if it is zero. 2350a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2351a30f8f8cSSatish Balay submatrix (same for all local rows). 2352a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2353a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23540298fd71SBarry Smith each block row) or NULL. 2355a30f8f8cSSatish Balay 2356a30f8f8cSSatish Balay Output Parameter: 2357a30f8f8cSSatish Balay . A - the matrix 2358a30f8f8cSSatish Balay 2359a30f8f8cSSatish Balay Options Database Keys: 2360a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2361a30f8f8cSSatish Balay block calculations (much slower) 2362a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2363a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2364a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2365a30f8f8cSSatish Balay 2366175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2367f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2368175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2369175b88e8SBarry Smith 2370a30f8f8cSSatish Balay Notes: 2371d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23726d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2373d1be2dadSMatthew Knepley 2374a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2375a30f8f8cSSatish Balay (possibly both). 2376a30f8f8cSSatish Balay 2377a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2378a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2379a30f8f8cSSatish Balay 238049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 238149a6f317SBarry Smith 2382a30f8f8cSSatish Balay Storage Information: 2383a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2384a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2385a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2386a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2389a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 23900298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2391a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2392a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2393a30f8f8cSSatish Balay 2394a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2395a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2396a30f8f8cSSatish Balay 2397a30f8f8cSSatish Balay .vb 2398a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2399a4b1a0f6SJed Brown -------------------------- 2400c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2401c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2402c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2403a4b1a0f6SJed Brown -------------------------- 2404a30f8f8cSSatish Balay .ve 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2407a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24086d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24096d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2410a30f8f8cSSatish Balay 24116d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 24126d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2413a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2414a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2415a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2416a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2417a30f8f8cSSatish Balay matrices. 2418a30f8f8cSSatish Balay 2419a30f8f8cSSatish Balay Level: intermediate 2420a30f8f8cSSatish Balay 242169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2422a30f8f8cSSatish Balay @*/ 2423a30f8f8cSSatish Balay 242469b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2425a30f8f8cSSatish Balay { 24266849ba73SBarry Smith PetscErrorCode ierr; 24271302d50aSBarry Smith PetscMPIInt size; 2428a30f8f8cSSatish Balay 2429a30f8f8cSSatish Balay PetscFunctionBegin; 2430f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2431f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2432273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2433273d9f13SBarry Smith if (size > 1) { 2434b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2435b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2436273d9f13SBarry Smith } else { 2437273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2438273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2439273d9f13SBarry Smith } 2440a30f8f8cSSatish Balay PetscFunctionReturn(0); 2441a30f8f8cSSatish Balay } 2442a30f8f8cSSatish Balay 2443a30f8f8cSSatish Balay 24446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2445a30f8f8cSSatish Balay { 2446a30f8f8cSSatish Balay Mat mat; 2447a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2448dfbe8321SBarry Smith PetscErrorCode ierr; 2449d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2450387bc808SHong Zhang PetscScalar *array; 2451a30f8f8cSSatish Balay 2452a30f8f8cSSatish Balay PetscFunctionBegin; 2453a30f8f8cSSatish Balay *newmat = 0; 245426fbe8dcSKarl Rupp 2455ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2456d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 24577adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 24581e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 24591e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2460e1b6402fSHong Zhang 2461d5f3da31SBarry Smith mat->factortype = matin->factortype; 2462273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 246382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24647fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24657fff6886SHong Zhang 2466b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2467a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2468a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2469a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2470a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2471a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2472a30f8f8cSSatish Balay 2473a30f8f8cSSatish Balay a->size = oldmat->size; 2474a30f8f8cSSatish Balay a->rank = oldmat->rank; 2475a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2476a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2477a30f8f8cSSatish Balay a->rowindices = 0; 2478a30f8f8cSSatish Balay a->rowvalues = 0; 2479a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2480a30f8f8cSSatish Balay a->barray = 0; 2481899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2482899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2483899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2484899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2485a30f8f8cSSatish Balay 2486a30f8f8cSSatish Balay /* hash table stuff */ 2487a30f8f8cSSatish Balay a->ht = 0; 2488a30f8f8cSSatish Balay a->hd = 0; 2489a30f8f8cSSatish Balay a->ht_size = 0; 2490a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2491a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2492a30f8f8cSSatish Balay a->ht_total_ct = 0; 2493a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2494a30f8f8cSSatish Balay 2495580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2496a30f8f8cSSatish Balay if (oldmat->colmap) { 2497a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2498a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2499a30f8f8cSSatish Balay #else 2500854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 25013bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2502580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2503a30f8f8cSSatish Balay #endif 2504a30f8f8cSSatish Balay } else a->colmap = 0; 2505387bc808SHong Zhang 2506a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2507785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 25083bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2509580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2510a30f8f8cSSatish Balay } else a->garray = 0; 2511a30f8f8cSSatish Balay 2512ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2513a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 25143bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2515a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 25163bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 251782327fa8SHong Zhang 251882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 25193bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 252082327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 25213bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2522387bc808SHong Zhang 2523387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 25241ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2525778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2526778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 25271ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 25281ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2529778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 25301ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 25313bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 25323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 25333bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 25343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 25353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2536387bc808SHong Zhang 2537387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2538387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2539387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 25403bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 254182327fa8SHong Zhang 2542a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25433bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2544a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 25453bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2546140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2547a30f8f8cSSatish Balay *newmat = mat; 2548a30f8f8cSSatish Balay PetscFunctionReturn(0); 2549a30f8f8cSSatish Balay } 2550a30f8f8cSSatish Balay 2551618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2552618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2553618cc2edSLisandro Dalcin 2554618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer) 255595936485SShri Abhyankar { 255695936485SShri Abhyankar PetscErrorCode ierr; 25577f489da9SVaclav Hapla PetscBool isbinary; 255895936485SShri Abhyankar 255995936485SShri Abhyankar PetscFunctionBegin; 25607f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 2561618cc2edSLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 2562618cc2edSLisandro Dalcin ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 256395936485SShri Abhyankar PetscFunctionReturn(0); 256495936485SShri Abhyankar } 256595936485SShri Abhyankar 2566dcf5cc72SBarry Smith /*XXXXX@ 2567a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2568a30f8f8cSSatish Balay 2569a30f8f8cSSatish Balay Input Parameters: 2570a30f8f8cSSatish Balay . mat - the matrix 2571a30f8f8cSSatish Balay . fact - factor 2572a30f8f8cSSatish Balay 2573c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2574a30f8f8cSSatish Balay 2575a30f8f8cSSatish Balay Level: advanced 2576a30f8f8cSSatish Balay 2577a30f8f8cSSatish Balay Notes: 2578a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2579a30f8f8cSSatish Balay 2580a30f8f8cSSatish Balay .seealso: MatSetOption() 2581dcf5cc72SBarry Smith @XXXXX*/ 2582dcf5cc72SBarry Smith 258324d5174aSHong Zhang 2584985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 258524d5174aSHong Zhang { 258624d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2587f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2588ca54ac64SHong Zhang PetscReal atmp; 258987828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2590dfbe8321SBarry Smith PetscErrorCode ierr; 25911302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 25921302d50aSBarry Smith PetscMPIInt rank,size; 25931302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 259487828ca2SBarry Smith PetscScalar *va; 25958a1c53f2SBarry Smith MatScalar *ba; 2596f4c0e9e4SHong Zhang MPI_Status stat; 259724d5174aSHong Zhang 259824d5174aSHong Zhang PetscFunctionBegin; 2599e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 26000298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 26011ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2602f4c0e9e4SHong Zhang 2603ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2604ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2605f4c0e9e4SHong Zhang 2606d0f46423SBarry Smith bs = A->rmap->bs; 2607f4c0e9e4SHong Zhang mbs = a->mbs; 2608f4c0e9e4SHong Zhang Mbs = a->Mbs; 2609f4c0e9e4SHong Zhang ba = b->a; 2610f4c0e9e4SHong Zhang bi = b->i; 2611f4c0e9e4SHong Zhang bj = b->j; 2612f4c0e9e4SHong Zhang 2613f4c0e9e4SHong Zhang /* find ownerships */ 2614d0f46423SBarry Smith rowners_bs = A->rmap->range; 2615f4c0e9e4SHong Zhang 2616f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 2617580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 2618f4c0e9e4SHong Zhang 2619f4c0e9e4SHong Zhang /* row_max for B */ 2620b8475685SHong Zhang if (rank != size-1) { 2621f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2622f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2623f4c0e9e4SHong Zhang brow = bs*i; 2624f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2625f4c0e9e4SHong Zhang bcol = bs*(*bj); 2626f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2627ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 262804d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2629f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2630f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2631ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2632ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2633f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2634f4c0e9e4SHong Zhang } 2635f4c0e9e4SHong Zhang } 2636f4c0e9e4SHong Zhang bj++; 2637f4c0e9e4SHong Zhang } 2638f4c0e9e4SHong Zhang } 2639f4c0e9e4SHong Zhang 2640f4c0e9e4SHong Zhang /* send values to its owners */ 2641f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2642f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2643ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2644ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2645ca54ac64SHong Zhang } 2646f4c0e9e4SHong Zhang } 2647f4c0e9e4SHong Zhang 2648f4c0e9e4SHong Zhang /* receive values */ 2649ca54ac64SHong Zhang if (rank) { 2650f4c0e9e4SHong Zhang rvalues = work; 2651ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2652f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2653ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2654f4c0e9e4SHong Zhang /* process values */ 2655f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2656ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2657f4c0e9e4SHong Zhang } 2658f4c0e9e4SHong Zhang } 2659ca54ac64SHong Zhang } 2660f4c0e9e4SHong Zhang 26611ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2662ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 266324d5174aSHong Zhang PetscFunctionReturn(0); 266424d5174aSHong Zhang } 26652798e883SHong Zhang 266641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 26672798e883SHong Zhang { 26682798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2669dfbe8321SBarry Smith PetscErrorCode ierr; 2670d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 26713649974fSBarry Smith PetscScalar *x,*ptr,*from; 2672ffe4fb16SHong Zhang Vec bb1; 26733649974fSBarry Smith const PetscScalar *b; 2674ffe4fb16SHong Zhang 2675ffe4fb16SHong Zhang PetscFunctionBegin; 2676e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2677e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2678ffe4fb16SHong Zhang 2679a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 268041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2681a2b30743SBarry Smith PetscFunctionReturn(0); 2682a2b30743SBarry Smith } 2683a2b30743SBarry Smith 2684ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2685ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 268641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2687ffe4fb16SHong Zhang its--; 2688ffe4fb16SHong Zhang } 2689ffe4fb16SHong Zhang 2690ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2691ffe4fb16SHong Zhang while (its--) { 2692ffe4fb16SHong Zhang 2693ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2694ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2695ffe4fb16SHong Zhang 2696ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26971ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 26981ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2699580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 27001ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2701ffe4fb16SHong Zhang 2702efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2703ffe4fb16SHong Zhang 2704ffe4fb16SHong Zhang /* copy bb into slvec1a */ 27051ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 27063649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2707580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 27081ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2709ffe4fb16SHong Zhang 2710ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2711fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2712ffe4fb16SHong Zhang 2713ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 27141ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2715a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2716ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2717ffe4fb16SHong Zhang 2718ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2719ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2720ffe4fb16SHong Zhang 2721ffe4fb16SHong Zhang /* local diagonal sweep */ 272241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2723ffe4fb16SHong Zhang } 27246bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2725fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 272641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2727fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 272841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2729fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2730fa22f6d0SBarry Smith Vec xx1; 2731ace3abfcSBarry Smith PetscBool hasop; 273220f1ed55SBarry Smith const PetscScalar *diag; 2733887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 273420f1ed55SBarry Smith PetscInt i,n; 2735fa22f6d0SBarry Smith 2736fa22f6d0SBarry Smith if (!mat->xx1) { 2737fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2738fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2739fa22f6d0SBarry Smith } 2740fa22f6d0SBarry Smith xx1 = mat->xx1; 2741fa22f6d0SBarry Smith bb1 = mat->bb1; 2742fa22f6d0SBarry Smith 274341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2744fa22f6d0SBarry Smith 2745fa22f6d0SBarry Smith if (!mat->diag) { 2746effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27472a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2748fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2749fa22f6d0SBarry Smith } 2750fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2751fa22f6d0SBarry Smith 2752fa22f6d0SBarry Smith if (hasop) { 2753fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2754887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 275520f1ed55SBarry Smith } else { 275620f1ed55SBarry Smith /* 275720f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 275820f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2759887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 276020f1ed55SBarry Smith */ 276120f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27623649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27633649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 276420f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 276520f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2766887ee2caSBarry Smith if (omega == 1.0) { 276726fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 276820f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2769887ee2caSBarry Smith } else { 277026fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2771887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2772887ee2caSBarry Smith } 277320f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 27743649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 27753649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 277620f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 277720f1ed55SBarry Smith } 2778fa22f6d0SBarry Smith 2779fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2780fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2781fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2782fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2783fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2784580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 2785fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2786fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2787fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2788fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2789effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2790fa22f6d0SBarry Smith 2791fa22f6d0SBarry Smith /* local sweep */ 279241f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2793fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2794f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2795ffe4fb16SHong Zhang PetscFunctionReturn(0); 2796ffe4fb16SHong Zhang } 2797ffe4fb16SHong Zhang 2798dfb205c3SBarry Smith /*@ 2799dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2800dfb205c3SBarry Smith CSR format the local rows. 2801dfb205c3SBarry Smith 2802d083f849SBarry Smith Collective 2803dfb205c3SBarry Smith 2804dfb205c3SBarry Smith Input Parameters: 2805dfb205c3SBarry Smith + comm - MPI communicator 2806dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2807dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2808dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2809dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2810dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2811dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2812dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2813483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2814dfb205c3SBarry Smith . j - column indices 2815dfb205c3SBarry Smith - a - matrix values 2816dfb205c3SBarry Smith 2817dfb205c3SBarry Smith Output Parameter: 2818dfb205c3SBarry Smith . mat - the matrix 2819dfb205c3SBarry Smith 2820dfb205c3SBarry Smith Level: intermediate 2821dfb205c3SBarry Smith 2822dfb205c3SBarry Smith Notes: 2823dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2824dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2825dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2826dfb205c3SBarry Smith 2827dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2828dfb205c3SBarry Smith 2829dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 283069b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2831dfb205c3SBarry Smith @*/ 28327087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2833dfb205c3SBarry Smith { 2834dfb205c3SBarry Smith PetscErrorCode ierr; 2835dfb205c3SBarry Smith 2836dfb205c3SBarry Smith 2837dfb205c3SBarry Smith PetscFunctionBegin; 2838f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2839dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2840dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2841dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2842dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2843dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2844dfb205c3SBarry Smith PetscFunctionReturn(0); 2845dfb205c3SBarry Smith } 2846dfb205c3SBarry Smith 2847dfb205c3SBarry Smith 2848dfb205c3SBarry Smith /*@C 2849664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 2850dfb205c3SBarry Smith 2851d083f849SBarry Smith Collective 2852dfb205c3SBarry Smith 2853dfb205c3SBarry Smith Input Parameters: 28541c4f3114SJed Brown + B - the matrix 2855dfb205c3SBarry Smith . bs - the block size 2856dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2857dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2858dfb205c3SBarry Smith - v - optional values in the matrix 2859dfb205c3SBarry Smith 2860664954b6SBarry Smith Level: advanced 2861664954b6SBarry Smith 2862664954b6SBarry Smith Notes: 28630cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28640cd7f59aSBarry Smith and usually the numerical values as well 28650cd7f59aSBarry Smith 286650c5228eSBarry Smith Any entries below the diagonal are ignored 2867dfb205c3SBarry Smith 286869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2869dfb205c3SBarry Smith @*/ 28707087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2871dfb205c3SBarry Smith { 28724ac538c5SBarry Smith PetscErrorCode ierr; 2873dfb205c3SBarry Smith 2874dfb205c3SBarry Smith PetscFunctionBegin; 28754ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2876dfb205c3SBarry Smith PetscFunctionReturn(0); 2877dfb205c3SBarry Smith } 2878dfb205c3SBarry Smith 287910c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 28804dcd73b1SHong Zhang { 28814dcd73b1SHong Zhang PetscErrorCode ierr; 288210c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 288310c56fdeSHong Zhang PetscInt *indx; 288410c56fdeSHong Zhang PetscScalar *values; 2885dfb205c3SBarry Smith 28864dcd73b1SHong Zhang PetscFunctionBegin; 28874dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 288810c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 288910c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 2890de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 289110c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 2892de25e9cbSPierre Jolivet PetscMPIInt rank,size; 28934dcd73b1SHong Zhang 289410c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 289510c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 289610c56fdeSHong Zhang if (n == PETSC_DECIDE) { 2897da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 289810c56fdeSHong Zhang } 2899da91a574SPierre Jolivet nbs = n/cbs; 29004dcd73b1SHong Zhang 29014dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 2902de25e9cbSPierre Jolivet ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 2903de25e9cbSPierre Jolivet 2904de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2905de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 2906de25e9cbSPierre Jolivet if (rank == size-1) { 2907de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 2908de25e9cbSPierre Jolivet if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 2909de25e9cbSPierre Jolivet } 2910de25e9cbSPierre Jolivet 2911de25e9cbSPierre Jolivet rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 2912e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 291310c56fdeSHong Zhang for (i=0; i<mbs; i++) { 29144dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 29154dcd73b1SHong Zhang nnz = nnz/bs; 29164dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 29174dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 29184dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 29194dcd73b1SHong Zhang } 2920e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 29214dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 29224dcd73b1SHong Zhang 29234dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 2924de25e9cbSPierre Jolivet ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 29254dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 2926ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 2927ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 29284dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 29294dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 29304dcd73b1SHong Zhang } 29314dcd73b1SHong Zhang 293210c56fdeSHong Zhang /* numeric phase */ 29334dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 293410c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 29354dcd73b1SHong Zhang 2936e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 29374dcd73b1SHong Zhang for (i=0; i<m; i++) { 29384dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29394dcd73b1SHong Zhang Ii = i + rstart; 294010c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 29414dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 29424dcd73b1SHong Zhang } 2943e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 294410c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 294510c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29464dcd73b1SHong Zhang PetscFunctionReturn(0); 29474dcd73b1SHong Zhang } 2948