xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision a32341863366332f7a65d929fce33ce85c8bfbdc)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
11d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*);
12d24d4204SJose E. Roman #endif
13b147fbf3SStefano Zampini 
14b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
15b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
16b147fbf3SStefano Zampini {
17b147fbf3SStefano Zampini   Mat            preallocator;
18b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
19b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
20b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
21b147fbf3SStefano Zampini   PetscErrorCode ierr;
22b147fbf3SStefano Zampini 
23b147fbf3SStefano Zampini   PetscFunctionBegin;
24b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
25b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
26b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
27b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
28b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
29b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
30b147fbf3SStefano Zampini   }
31b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
32b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
39b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
40b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
41b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
42b147fbf3SStefano Zampini     PetscInt          ncols;
43b147fbf3SStefano Zampini     const PetscInt    *row;
44b147fbf3SStefano Zampini     const PetscScalar *vals;
45b147fbf3SStefano Zampini 
46b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
47b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
49b147fbf3SStefano Zampini       if (symm && symm[i]) {
50b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
51b147fbf3SStefano Zampini       }
52b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
53b147fbf3SStefano Zampini     }
54b147fbf3SStefano Zampini   }
55b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
57b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
58b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
59b147fbf3SStefano Zampini   PetscFunctionReturn(0);
60b147fbf3SStefano Zampini }
61b147fbf3SStefano Zampini 
6228d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
63b147fbf3SStefano Zampini {
64b147fbf3SStefano Zampini   Mat            B;
65b147fbf3SStefano Zampini   PetscErrorCode ierr;
66b147fbf3SStefano Zampini   PetscInt       r;
67b147fbf3SStefano Zampini 
68b147fbf3SStefano Zampini   PetscFunctionBegin;
69b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
7028d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
71b147fbf3SStefano Zampini     PetscInt  bs;
72b147fbf3SStefano Zampini 
73b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
77b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
78b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
79b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
8028d58a37SPierre Jolivet     ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
8128d58a37SPierre Jolivet     if (!isdense) {
82b147fbf3SStefano Zampini       ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
83b147fbf3SStefano Zampini       ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
84b147fbf3SStefano Zampini       ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
8528d58a37SPierre Jolivet     } else {
8628d58a37SPierre Jolivet       ierr = MatSetUp(B);CHKERRQ(ierr);
8728d58a37SPierre Jolivet     }
8828d58a37SPierre Jolivet   } else {
8928d58a37SPierre Jolivet     B    = *newmat;
9028d58a37SPierre Jolivet     ierr = MatZeroEntries(B);CHKERRQ(ierr);
9128d58a37SPierre Jolivet   }
92b147fbf3SStefano Zampini 
93b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
94b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
95b147fbf3SStefano Zampini     PetscInt          ncols;
96b147fbf3SStefano Zampini     const PetscInt    *row;
97b147fbf3SStefano Zampini     const PetscScalar *vals;
98b147fbf3SStefano Zampini 
99b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
100b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
101eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
102eb1ec7c1SStefano Zampini     if (A->hermitian) {
103eb1ec7c1SStefano Zampini       PetscInt i;
104eb1ec7c1SStefano Zampini       for (i = 0; i < ncols; i++) {
105eb1ec7c1SStefano Zampini         ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr);
106eb1ec7c1SStefano Zampini       }
107eb1ec7c1SStefano Zampini     } else {
108b147fbf3SStefano Zampini       ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
109eb1ec7c1SStefano Zampini     }
110eb1ec7c1SStefano Zampini #else
111eb1ec7c1SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
112eb1ec7c1SStefano Zampini #endif
113b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
114b147fbf3SStefano Zampini   }
115b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
116b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
118b147fbf3SStefano Zampini 
119b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
120b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
121b147fbf3SStefano Zampini   } else {
122b147fbf3SStefano Zampini     *newmat = B;
123b147fbf3SStefano Zampini   }
124b147fbf3SStefano Zampini   PetscFunctionReturn(0);
125b147fbf3SStefano Zampini }
126b147fbf3SStefano Zampini 
1277087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
128a30f8f8cSSatish Balay {
129f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
130dfbe8321SBarry Smith   PetscErrorCode ierr;
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay   PetscFunctionBegin;
133a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
134a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
135a30f8f8cSSatish Balay   PetscFunctionReturn(0);
136a30f8f8cSSatish Balay }
137a30f8f8cSSatish Balay 
1387087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
139a30f8f8cSSatish Balay {
140f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
141dfbe8321SBarry Smith   PetscErrorCode ierr;
142a30f8f8cSSatish Balay 
143a30f8f8cSSatish Balay   PetscFunctionBegin;
144a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
145a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
146a30f8f8cSSatish Balay   PetscFunctionReturn(0);
147a30f8f8cSSatish Balay }
148a30f8f8cSSatish Balay 
149d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
150a30f8f8cSSatish Balay   { \
151a30f8f8cSSatish Balay     brow = row/bs;  \
152a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
153a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
154a30f8f8cSSatish Balay     bcol = col/bs; \
155a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
156a30f8f8cSSatish Balay     low  = 0; high = nrow; \
157a30f8f8cSSatish Balay     while (high-low > 3) { \
158a30f8f8cSSatish Balay       t = (low+high)/2; \
159a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
160a30f8f8cSSatish Balay       else              low  = t; \
161a30f8f8cSSatish Balay     } \
162a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
163a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
164a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
165a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
166a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
167a30f8f8cSSatish Balay         else                    *bap  = value;  \
168a30f8f8cSSatish Balay         goto a_noinsert; \
169a30f8f8cSSatish Balay       } \
170a30f8f8cSSatish Balay     } \
171a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
172d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
173fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
174a30f8f8cSSatish Balay     N = nrow++ - 1;  \
175a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
176580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
177580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
178580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
179a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
180a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
181e56f5c9eSBarry Smith     A->nonzerostate++;\
182a30f8f8cSSatish Balay a_noinsert:; \
183a30f8f8cSSatish Balay     ailen[brow] = nrow; \
184a30f8f8cSSatish Balay   }
185e5e170daSBarry Smith 
186d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
187a30f8f8cSSatish Balay   { \
188a30f8f8cSSatish Balay     brow = row/bs;  \
189a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
190a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
191a30f8f8cSSatish Balay     bcol = col/bs; \
192a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
193a30f8f8cSSatish Balay     low  = 0; high = nrow; \
194a30f8f8cSSatish Balay     while (high-low > 3) { \
195a30f8f8cSSatish Balay       t = (low+high)/2; \
196a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
197a30f8f8cSSatish Balay       else              low  = t; \
198a30f8f8cSSatish Balay     } \
199a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
200a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
201a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
202a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
203a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
204a30f8f8cSSatish Balay         else                    *bap  = value;  \
205a30f8f8cSSatish Balay         goto b_noinsert; \
206a30f8f8cSSatish Balay       } \
207a30f8f8cSSatish Balay     } \
208a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
209d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
210fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
211a30f8f8cSSatish Balay     N = nrow++ - 1;  \
212a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
213580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
214580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
215580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
216a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
217a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
218e56f5c9eSBarry Smith     B->nonzerostate++;\
219a30f8f8cSSatish Balay b_noinsert:; \
220a30f8f8cSSatish Balay     bilen[brow] = nrow; \
221a30f8f8cSSatish Balay   }
222a30f8f8cSSatish Balay 
223a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
224476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
225a30f8f8cSSatish Balay */
226dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
227a30f8f8cSSatish Balay {
228a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
229a30f8f8cSSatish Balay   MatScalar      value;
230ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
231dfbe8321SBarry Smith   PetscErrorCode ierr;
2321302d50aSBarry Smith   PetscInt       i,j,row,col;
233d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
234d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
235d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
236a30f8f8cSSatish Balay 
237a30f8f8cSSatish Balay   /* Some Variables required in the macro */
238a30f8f8cSSatish Balay   Mat          A     = baij->A;
239a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2401302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
241a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
242a30f8f8cSSatish Balay 
243a30f8f8cSSatish Balay   Mat         B     = baij->B;
244a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2451302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
246a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
247a30f8f8cSSatish Balay 
2481302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2491302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
250a30f8f8cSSatish Balay   MatScalar *ap,*bap;
251a30f8f8cSSatish Balay 
252a30f8f8cSSatish Balay   /* for stash */
2530298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2540298fd71SBarry Smith   MatScalar *v_loc = NULL;
255a30f8f8cSSatish Balay 
256a30f8f8cSSatish Balay   PetscFunctionBegin;
257a30f8f8cSSatish Balay   if (!baij->donotstash) {
25859ffdab8SBarry Smith     if (n > baij->n_loc) {
25959ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
26059ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
261785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
262785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
26326fbe8dcSKarl Rupp 
26459ffdab8SBarry Smith       baij->n_loc = n;
26559ffdab8SBarry Smith     }
26659ffdab8SBarry Smith     in_loc = baij->in_loc;
26759ffdab8SBarry Smith     v_loc  = baij->v_loc;
268a30f8f8cSSatish Balay   }
269a30f8f8cSSatish Balay 
270a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
271a30f8f8cSSatish Balay     if (im[i] < 0) continue;
272cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
273a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
274a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
275a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
27601b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
27701b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27801b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
27926fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
28001b2bd88SHong Zhang         }
281a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
282a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
283a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
284a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
285db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
286db4deed7SKarl Rupp           else             value = v[i+j*m];
287d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
288a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
289a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
290cf9c20a2SJed Brown         else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
291a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
292a30f8f8cSSatish Balay           if (mat->was_assembled) {
293a30f8f8cSSatish Balay             if (!baij->colmap) {
294ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
295a30f8f8cSSatish Balay             }
296a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
297a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
29871730473SSatish Balay             col  = col - 1;
299a30f8f8cSSatish Balay #else
30071730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
301a30f8f8cSSatish Balay #endif
302a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
303ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
304a30f8f8cSSatish Balay               col  =  in[j];
305a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
306a30f8f8cSSatish Balay               B    = baij->B;
307a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
308a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
309a30f8f8cSSatish Balay               ba   = b->a;
31071730473SSatish Balay             } else col += in[j]%bs;
311a30f8f8cSSatish Balay           } else col = in[j];
312db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
313db4deed7SKarl Rupp           else             value = v[i+j*m];
314d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
315a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
316a30f8f8cSSatish Balay         }
317a30f8f8cSSatish Balay       }
318a30f8f8cSSatish Balay     } else {  /* off processor entry */
3194cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
320a30f8f8cSSatish Balay       if (!baij->donotstash) {
3215080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
322a30f8f8cSSatish Balay         n_loc          = 0;
323a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
324f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
325a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
326a30f8f8cSSatish Balay           if (roworiented) {
327a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
328a30f8f8cSSatish Balay           } else {
329a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
330a30f8f8cSSatish Balay           }
331a30f8f8cSSatish Balay           n_loc++;
332a30f8f8cSSatish Balay         }
333b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
334a30f8f8cSSatish Balay       }
335a30f8f8cSSatish Balay     }
336a30f8f8cSSatish Balay   }
337a30f8f8cSSatish Balay   PetscFunctionReturn(0);
338a30f8f8cSSatish Balay }
339a30f8f8cSSatish Balay 
34036bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34136bd2089SBarry Smith {
34236bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
34336bd2089SBarry Smith   PetscErrorCode    ierr;
34436bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34536bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
34636bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34736bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34836bd2089SBarry Smith   const PetscScalar *value     = v;
34936bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35036bd2089SBarry Smith 
35136bd2089SBarry Smith   PetscFunctionBegin;
35236bd2089SBarry Smith   if (col < row) {
35336bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
35436bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
35536bd2089SBarry Smith   }
35636bd2089SBarry Smith   rp   = aj + ai[row];
35736bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35836bd2089SBarry Smith   rmax = imax[row];
35936bd2089SBarry Smith   nrow = ailen[row];
36036bd2089SBarry Smith   value = v;
36136bd2089SBarry Smith   low   = 0;
36236bd2089SBarry Smith   high  = nrow;
36336bd2089SBarry Smith 
36436bd2089SBarry Smith   while (high-low > 7) {
36536bd2089SBarry Smith     t = (low+high)/2;
36636bd2089SBarry Smith     if (rp[t] > col) high = t;
36736bd2089SBarry Smith     else             low  = t;
36836bd2089SBarry Smith   }
36936bd2089SBarry Smith   for (i=low; i<high; i++) {
37036bd2089SBarry Smith     if (rp[i] > col) break;
37136bd2089SBarry Smith     if (rp[i] == col) {
37236bd2089SBarry Smith       bap = ap +  bs2*i;
37336bd2089SBarry Smith       if (roworiented) {
37436bd2089SBarry Smith         if (is == ADD_VALUES) {
37536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37736bd2089SBarry Smith               bap[jj] += *value++;
37836bd2089SBarry Smith             }
37936bd2089SBarry Smith           }
38036bd2089SBarry Smith         } else {
38136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38336bd2089SBarry Smith               bap[jj] = *value++;
38436bd2089SBarry Smith             }
38536bd2089SBarry Smith           }
38636bd2089SBarry Smith         }
38736bd2089SBarry Smith       } else {
38836bd2089SBarry Smith         if (is == ADD_VALUES) {
38936bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39136bd2089SBarry Smith               *bap++ += *value++;
39236bd2089SBarry Smith             }
39336bd2089SBarry Smith           }
39436bd2089SBarry Smith         } else {
39536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39636bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39736bd2089SBarry Smith               *bap++  = *value++;
39836bd2089SBarry Smith             }
39936bd2089SBarry Smith           }
40036bd2089SBarry Smith         }
40136bd2089SBarry Smith       }
40236bd2089SBarry Smith       goto noinsert2;
40336bd2089SBarry Smith     }
40436bd2089SBarry Smith   }
40536bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40636bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
40736bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40836bd2089SBarry Smith   N = nrow++ - 1; high++;
40936bd2089SBarry Smith   /* shift up all the later entries in this row */
410580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
411580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
41236bd2089SBarry Smith   rp[i] = col;
41336bd2089SBarry Smith   bap   = ap +  bs2*i;
41436bd2089SBarry Smith   if (roworiented) {
41536bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41636bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41736bd2089SBarry Smith         bap[jj] = *value++;
41836bd2089SBarry Smith       }
41936bd2089SBarry Smith     }
42036bd2089SBarry Smith   } else {
42136bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42236bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42336bd2089SBarry Smith         *bap++ = *value++;
42436bd2089SBarry Smith       }
42536bd2089SBarry Smith     }
42636bd2089SBarry Smith   }
42736bd2089SBarry Smith   noinsert2:;
42836bd2089SBarry Smith   ailen[row] = nrow;
42936bd2089SBarry Smith   PetscFunctionReturn(0);
43036bd2089SBarry Smith }
43136bd2089SBarry Smith 
43236bd2089SBarry Smith /*
43336bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
43436bd2089SBarry Smith */
43536bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
43636bd2089SBarry Smith {
43736bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43836bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
43936bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
44036bd2089SBarry Smith   PetscErrorCode    ierr;
44136bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
44236bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
44336bd2089SBarry Smith   const PetscScalar *value     = v;
44436bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
44536bd2089SBarry Smith 
44636bd2089SBarry Smith   PetscFunctionBegin;
44736bd2089SBarry Smith   rp   = aj + ai[row];
44836bd2089SBarry Smith   ap   = aa + bs2*ai[row];
44936bd2089SBarry Smith   rmax = imax[row];
45036bd2089SBarry Smith   nrow = ailen[row];
45136bd2089SBarry Smith   low  = 0;
45236bd2089SBarry Smith   high = nrow;
45336bd2089SBarry Smith   value = v;
45436bd2089SBarry Smith   while (high-low > 7) {
45536bd2089SBarry Smith     t = (low+high)/2;
45636bd2089SBarry Smith     if (rp[t] > col) high = t;
45736bd2089SBarry Smith     else             low  = t;
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   for (i=low; i<high; i++) {
46036bd2089SBarry Smith     if (rp[i] > col) break;
46136bd2089SBarry Smith     if (rp[i] == col) {
46236bd2089SBarry Smith       bap = ap +  bs2*i;
46336bd2089SBarry Smith       if (roworiented) {
46436bd2089SBarry Smith         if (is == ADD_VALUES) {
46536bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46636bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46736bd2089SBarry Smith               bap[jj] += *value++;
46836bd2089SBarry Smith             }
46936bd2089SBarry Smith           }
47036bd2089SBarry Smith         } else {
47136bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
47236bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
47336bd2089SBarry Smith               bap[jj] = *value++;
47436bd2089SBarry Smith             }
47536bd2089SBarry Smith           }
47636bd2089SBarry Smith         }
47736bd2089SBarry Smith       } else {
47836bd2089SBarry Smith         if (is == ADD_VALUES) {
47936bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48036bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48136bd2089SBarry Smith               bap[jj] += value[jj];
48236bd2089SBarry Smith             }
48336bd2089SBarry Smith             bap += bs;
48436bd2089SBarry Smith           }
48536bd2089SBarry Smith         } else {
48636bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48836bd2089SBarry Smith               bap[jj]  = value[jj];
48936bd2089SBarry Smith             }
49036bd2089SBarry Smith             bap += bs;
49136bd2089SBarry Smith           }
49236bd2089SBarry Smith         }
49336bd2089SBarry Smith       }
49436bd2089SBarry Smith       goto noinsert2;
49536bd2089SBarry Smith     }
49636bd2089SBarry Smith   }
49736bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
49836bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
49936bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
50036bd2089SBarry Smith   N = nrow++ - 1; high++;
50136bd2089SBarry Smith   /* shift up all the later entries in this row */
502580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
503580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
50436bd2089SBarry Smith   rp[i] = col;
50536bd2089SBarry Smith   bap   = ap +  bs2*i;
50636bd2089SBarry Smith   if (roworiented) {
50736bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50836bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
50936bd2089SBarry Smith         bap[jj] = *value++;
51036bd2089SBarry Smith       }
51136bd2089SBarry Smith     }
51236bd2089SBarry Smith   } else {
51336bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
51436bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
51536bd2089SBarry Smith         *bap++ = *value++;
51636bd2089SBarry Smith       }
51736bd2089SBarry Smith     }
51836bd2089SBarry Smith   }
51936bd2089SBarry Smith   noinsert2:;
52036bd2089SBarry Smith   ailen[row] = nrow;
52136bd2089SBarry Smith   PetscFunctionReturn(0);
52236bd2089SBarry Smith }
52336bd2089SBarry Smith 
52436bd2089SBarry Smith /*
52536bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
52636bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52736bd2089SBarry Smith */
528dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
529a30f8f8cSSatish Balay {
5300880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
531f15d580aSBarry Smith   const MatScalar *value;
532f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
533ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
534dfbe8321SBarry Smith   PetscErrorCode  ierr;
535899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
536476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
537476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5380880e062SHong Zhang 
539a30f8f8cSSatish Balay   PetscFunctionBegin;
5400880e062SHong Zhang   if (!barray) {
541785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5420880e062SHong Zhang     baij->barray = barray;
5430880e062SHong Zhang   }
5440880e062SHong Zhang 
5450880e062SHong Zhang   if (roworiented) {
5460880e062SHong Zhang     stepval = (n-1)*bs;
5470880e062SHong Zhang   } else {
5480880e062SHong Zhang     stepval = (m-1)*bs;
5490880e062SHong Zhang   }
5500880e062SHong Zhang   for (i=0; i<m; i++) {
5510880e062SHong Zhang     if (im[i] < 0) continue;
552cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5530880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5540880e062SHong Zhang       row = im[i] - rstart;
5550880e062SHong Zhang       for (j=0; j<n; j++) {
556f3f98c53SJed Brown         if (im[i] > in[j]) {
557f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
558e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
559f3f98c53SJed Brown         }
5600880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5610880e062SHong Zhang         if ((roworiented) && (n == 1)) {
562f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5630880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
564f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5650880e062SHong Zhang         } else { /* Here a copy is required */
5660880e062SHong Zhang           if (roworiented) {
5670880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5680880e062SHong Zhang           } else {
5690880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5700880e062SHong Zhang           }
5710880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5720880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5730880e062SHong Zhang               *barray++ = *value++;
5740880e062SHong Zhang             }
5750880e062SHong Zhang           }
5760880e062SHong Zhang           barray -=bs2;
5770880e062SHong Zhang         }
5780880e062SHong Zhang 
5790880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5800880e062SHong Zhang           col  = in[j] - cstart;
58136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
58226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
583cf9c20a2SJed Brown         else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5840880e062SHong Zhang         else {
5850880e062SHong Zhang           if (mat->was_assembled) {
5860880e062SHong Zhang             if (!baij->colmap) {
587ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5880880e062SHong Zhang             }
5890880e062SHong Zhang 
5902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5910880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5921302d50aSBarry Smith             { PetscInt data;
5930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
594e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5950880e062SHong Zhang             }
5960880e062SHong Zhang #else
597e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
5980880e062SHong Zhang #endif
5990880e062SHong Zhang #endif
6000880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
6010880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
6020880e062SHong Zhang             col  = (col - 1)/bs;
6030880e062SHong Zhang #else
6040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
6050880e062SHong Zhang #endif
6060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
607ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
6080880e062SHong Zhang               col  = in[j];
6090880e062SHong Zhang             }
61026fbe8dcSKarl Rupp           } else col = in[j];
61136bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
6120880e062SHong Zhang         }
6130880e062SHong Zhang       }
6140880e062SHong Zhang     } else {
615bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6160880e062SHong Zhang       if (!baij->donotstash) {
6170880e062SHong Zhang         if (roworiented) {
6180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6190880e062SHong Zhang         } else {
6200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6210880e062SHong Zhang         }
6220880e062SHong Zhang       }
6230880e062SHong Zhang     }
6240880e062SHong Zhang   }
6250880e062SHong Zhang   PetscFunctionReturn(0);
626a30f8f8cSSatish Balay }
627a30f8f8cSSatish Balay 
6281302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
629a30f8f8cSSatish Balay {
630f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6316849ba73SBarry Smith   PetscErrorCode ierr;
632d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
633d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   PetscFunctionBegin;
636a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
637e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
638e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
639a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
640a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
641a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
642e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
643e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
644a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
645a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
646c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647a30f8f8cSSatish Balay         } else {
648a30f8f8cSSatish Balay           if (!baij->colmap) {
649ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
650a30f8f8cSSatish Balay           }
651a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
652a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
653a30f8f8cSSatish Balay           data--;
654a30f8f8cSSatish Balay #else
655a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
656a30f8f8cSSatish Balay #endif
657a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
658a30f8f8cSSatish Balay           else {
659a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
660e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
661a30f8f8cSSatish Balay           }
662a30f8f8cSSatish Balay         }
663a30f8f8cSSatish Balay       }
664f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
665a30f8f8cSSatish Balay   }
666a30f8f8cSSatish Balay   PetscFunctionReturn(0);
667a30f8f8cSSatish Balay }
668a30f8f8cSSatish Balay 
669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
670a30f8f8cSSatish Balay {
671a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
672dfbe8321SBarry Smith   PetscErrorCode ierr;
673a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
674a30f8f8cSSatish Balay 
675a30f8f8cSSatish Balay   PetscFunctionBegin;
676a30f8f8cSSatish Balay   if (baij->size == 1) {
677a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
678a30f8f8cSSatish Balay   } else {
679a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
680785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
681a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
682a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
683a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
684a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
685b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6868f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
687a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6880b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6890b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6900b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6910b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
692899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
693d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6940b8dc8d2SHong Zhang       MatScalar    *v;
6950b8dc8d2SHong Zhang 
696dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
697580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
6980b8dc8d2SHong Zhang       /* Amat */
6990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
7000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7020b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
7030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
7050b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7060b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7070b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7090b8dc8d2SHong Zhang               /* non-diagonal block */
7100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7110b8dc8d2SHong Zhang             }
7120b8dc8d2SHong Zhang           }
7130b8dc8d2SHong Zhang         }
71451f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7150b8dc8d2SHong Zhang       }
7160b8dc8d2SHong Zhang       /* Bmat */
7170b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7180b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7190b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7200b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7210b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7220b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7230b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7240b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7250b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7260b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7270b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7280b8dc8d2SHong Zhang             }
7290b8dc8d2SHong Zhang           }
7300b8dc8d2SHong Zhang         }
73151f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7320b8dc8d2SHong Zhang       }
733b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7340b8dc8d2SHong Zhang       *norm = 0.0;
735d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7360b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7370b8dc8d2SHong Zhang       }
73874ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
739f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
740a30f8f8cSSatish Balay   }
741a30f8f8cSSatish Balay   PetscFunctionReturn(0);
742a30f8f8cSSatish Balay }
743a30f8f8cSSatish Balay 
744dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
745a30f8f8cSSatish Balay {
746a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
7481302d50aSBarry Smith   PetscInt       nstash,reallocs;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
75126fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
752a30f8f8cSSatish Balay 
753d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7541e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7561e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7581e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
759a30f8f8cSSatish Balay   PetscFunctionReturn(0);
760a30f8f8cSSatish Balay }
761a30f8f8cSSatish Balay 
762dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
763a30f8f8cSSatish Balay {
764a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
765a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7666849ba73SBarry Smith   PetscErrorCode ierr;
76713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
768e44c0bd4SBarry Smith   PetscInt       *row,*col;
769ace3abfcSBarry Smith   PetscBool      other_disassembled;
77013f74950SBarry Smith   PetscMPIInt    n;
771ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
772a30f8f8cSSatish Balay   MatScalar      *val;
773a30f8f8cSSatish Balay 
77491c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
775a30f8f8cSSatish Balay   PetscFunctionBegin;
7764cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
777a30f8f8cSSatish Balay     while (1) {
778a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
779a30f8f8cSSatish Balay       if (!flg) break;
780a30f8f8cSSatish Balay 
781a30f8f8cSSatish Balay       for (i=0; i<n;) {
782a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
78326fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
78426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
78526fbe8dcSKarl Rupp         }
786a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
787a30f8f8cSSatish Balay         else       ncols = n-i;
788a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7894b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
790a30f8f8cSSatish Balay         i    = j;
791a30f8f8cSSatish Balay       }
792a30f8f8cSSatish Balay     }
793a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
794a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
795a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
796a30f8f8cSSatish Balay        restore the original flags */
797a30f8f8cSSatish Balay     r1 = baij->roworiented;
798a30f8f8cSSatish Balay     r2 = a->roworiented;
79991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
80026fbe8dcSKarl Rupp 
801a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
802a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
80326fbe8dcSKarl Rupp 
80491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
805a30f8f8cSSatish Balay     while (1) {
806a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
807a30f8f8cSSatish Balay       if (!flg) break;
808a30f8f8cSSatish Balay 
809a30f8f8cSSatish Balay       for (i=0; i<n;) {
810a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
81126fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
81226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81326fbe8dcSKarl Rupp         }
814a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
815a30f8f8cSSatish Balay         else       ncols = n-i;
8164b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
817a30f8f8cSSatish Balay         i    = j;
818a30f8f8cSSatish Balay       }
819a30f8f8cSSatish Balay     }
820a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
82126fbe8dcSKarl Rupp 
822a30f8f8cSSatish Balay     baij->roworiented = r1;
823a30f8f8cSSatish Balay     a->roworiented    = r2;
82426fbe8dcSKarl Rupp 
82591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
826a30f8f8cSSatish Balay   }
827a30f8f8cSSatish Balay 
828a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
829a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
830a30f8f8cSSatish Balay 
831a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
832a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
833a30f8f8cSSatish Balay   /*
834a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
835a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
836a30f8f8cSSatish Balay   */
837a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
838b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
839a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
840ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
841a30f8f8cSSatish Balay     }
842a30f8f8cSSatish Balay   }
843a30f8f8cSSatish Balay 
844a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
84540781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
846a30f8f8cSSatish Balay   }
847a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
848a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
849a30f8f8cSSatish Balay 
85074ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
85126fbe8dcSKarl Rupp 
852a30f8f8cSSatish Balay   baij->rowvalues = 0;
8534f9cfa9eSBarry Smith 
8544f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8554f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
856e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
857b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
858e56f5c9eSBarry Smith   }
859a30f8f8cSSatish Balay   PetscFunctionReturn(0);
860a30f8f8cSSatish Balay }
861a30f8f8cSSatish Balay 
862dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8639804daf3SBarry Smith #include <petscdraw.h>
8646849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
865a30f8f8cSSatish Balay {
866a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
867dfbe8321SBarry Smith   PetscErrorCode    ierr;
868d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8697da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
870ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
871b0a32e0cSBarry Smith   PetscViewer       sviewer;
872f3ef73ceSBarry Smith   PetscViewerFormat format;
873a30f8f8cSSatish Balay 
874a30f8f8cSSatish Balay   PetscFunctionBegin;
875251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
876251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
87732077d6dSBarry Smith   if (iascii) {
878b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
879456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
880a30f8f8cSSatish Balay       MatInfo info;
881ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
882a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8831575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
884b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
885a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
886e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
887a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
888e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
889b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8901575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
89107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
892a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
893a30f8f8cSSatish Balay       PetscFunctionReturn(0);
894fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
89577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
896a30f8f8cSSatish Balay       PetscFunctionReturn(0);
897c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
898c1490034SHong Zhang       PetscFunctionReturn(0);
899a30f8f8cSSatish Balay     }
900a30f8f8cSSatish Balay   }
901a30f8f8cSSatish Balay 
902a30f8f8cSSatish Balay   if (isdraw) {
903b0a32e0cSBarry Smith     PetscDraw draw;
904ace3abfcSBarry Smith     PetscBool isnull;
905b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
90645f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
90745f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
908a30f8f8cSSatish Balay   }
909a30f8f8cSSatish Balay 
9107da1fb6eSBarry Smith   {
911a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
912a30f8f8cSSatish Balay     Mat          A;
91365d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
91465d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
915d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
916a30f8f8cSSatish Balay     MatScalar    *a;
9173e219373SBarry Smith     const char   *matname;
918a30f8f8cSSatish Balay 
919f204ca49SKris Buschelman     /* Should this be the same type as mat? */
920ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
921a30f8f8cSSatish Balay     if (!rank) {
922f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
923a30f8f8cSSatish Balay     } else {
924f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
925a30f8f8cSSatish Balay     }
926f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9270298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9282b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9293bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
930a30f8f8cSSatish Balay 
931a30f8f8cSSatish Balay     /* copy over the A part */
93265d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
933a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
934785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
937e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
93826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
939a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
940e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
941a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
942dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94326fbe8dcSKarl Rupp           col++;
94426fbe8dcSKarl Rupp           a += bs;
945a30f8f8cSSatish Balay         }
946a30f8f8cSSatish Balay       }
947a30f8f8cSSatish Balay     }
948a30f8f8cSSatish Balay     /* copy over the B part */
94965d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
95065d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
951a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
952e9f7bc9eSHong Zhang 
953e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
95426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
955a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
956a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
957a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
958799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
95926fbe8dcSKarl Rupp           col++;
96026fbe8dcSKarl Rupp           a += bs;
961a30f8f8cSSatish Balay         }
962a30f8f8cSSatish Balay       }
963a30f8f8cSSatish Balay     }
964a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
965a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
966a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
967a30f8f8cSSatish Balay     /*
968a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
969b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
970a30f8f8cSSatish Balay     */
9713f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
972ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9733e219373SBarry Smith     if (!rank) {
974ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
975383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
976a30f8f8cSSatish Balay     }
9773f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9781575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9796bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
980a30f8f8cSSatish Balay   }
981a30f8f8cSSatish Balay   PetscFunctionReturn(0);
982a30f8f8cSSatish Balay }
983a30f8f8cSSatish Balay 
984618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
985618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
986d1654148SHong Zhang 
987dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
988a30f8f8cSSatish Balay {
989dfbe8321SBarry Smith   PetscErrorCode ierr;
990ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
991a30f8f8cSSatish Balay 
992a30f8f8cSSatish Balay   PetscFunctionBegin;
993251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
994251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
995251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
996251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
997d1654148SHong Zhang   if (iascii || isdraw || issocket) {
998a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
999d1654148SHong Zhang   } else if (isbinary) {
1000d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1001a30f8f8cSSatish Balay   }
1002a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1003a30f8f8cSSatish Balay }
1004a30f8f8cSSatish Balay 
1005dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1006a30f8f8cSSatish Balay {
1007a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1008dfbe8321SBarry Smith   PetscErrorCode ierr;
1009a30f8f8cSSatish Balay 
1010a30f8f8cSSatish Balay   PetscFunctionBegin;
1011a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1012d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1013a30f8f8cSSatish Balay #endif
1014a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1015a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
10166bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
10176bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1018a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
10196bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1020a30f8f8cSSatish Balay #else
102105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1022a30f8f8cSSatish Balay #endif
102305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
10246bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
10256bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
10266bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
10276bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
10286bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
10296bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
10306bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
10316bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
10325755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
103305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
103405b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
10356bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
10366bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
10376bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1038ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
103905b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1040a30f8f8cSSatish Balay #endif
104159ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
104259ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1043899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1044bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1045901853e0SKris Buschelman 
1046dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1047bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1048bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1049bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1050d2c30c80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
10516214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
10526214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
10536214f412SHong Zhang #endif
1054d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1055d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_scalapack_C",NULL);CHKERRQ(ierr);
1056d24d4204SJose E. Roman #endif
1057b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1058b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1059a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1060a30f8f8cSSatish Balay }
1061a30f8f8cSSatish Balay 
1062547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1063547795f9SHong Zhang {
1064547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1065547795f9SHong Zhang   PetscErrorCode    ierr;
1066eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
10676de40e93SBarry Smith   PetscScalar       *from;
10686de40e93SBarry Smith   const PetscScalar *x;
1069547795f9SHong Zhang 
1070547795f9SHong Zhang   PetscFunctionBegin;
1071547795f9SHong Zhang   /* diagonal part */
1072547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1073547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1074547795f9SHong Zhang 
1075547795f9SHong Zhang   /* subdiagonal part */
1076*a3234186SStefano Zampini   if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name);
1077547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1078547795f9SHong Zhang 
1079547795f9SHong Zhang   /* copy x into the vec slvec0 */
1080547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
10816de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1082547795f9SHong Zhang 
1083580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1084547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
10856de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1086547795f9SHong Zhang 
1087547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1088547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1089547795f9SHong Zhang   /* supperdiagonal part */
1090547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1091547795f9SHong Zhang   PetscFunctionReturn(0);
1092547795f9SHong Zhang }
1093547795f9SHong Zhang 
1094dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1095a9d4b620SHong Zhang {
1096a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1097dfbe8321SBarry Smith   PetscErrorCode    ierr;
1098eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1099d9ca1df4SBarry Smith   PetscScalar       *from;
1100d9ca1df4SBarry Smith   const PetscScalar *x;
1101a9d4b620SHong Zhang 
1102a9d4b620SHong Zhang   PetscFunctionBegin;
1103a9d4b620SHong Zhang   /* diagonal part */
1104a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1105fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1106a9d4b620SHong Zhang 
1107a9d4b620SHong Zhang   /* subdiagonal part */
1108a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1109fc165ae2SBarry Smith 
1110a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11111ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1112d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1113a9d4b620SHong Zhang 
1114580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1115fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1116d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1117fc165ae2SBarry Smith 
1118fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1119ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1120a9d4b620SHong Zhang   /* supperdiagonal part */
1121a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1122a9d4b620SHong Zhang   PetscFunctionReturn(0);
1123a9d4b620SHong Zhang }
1124a9d4b620SHong Zhang 
1125eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)
1126eb1ec7c1SStefano Zampini {
1127eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1128eb1ec7c1SStefano Zampini   PetscErrorCode    ierr;
1129eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1130eb1ec7c1SStefano Zampini   PetscScalar       *from,zero=0.0;
1131eb1ec7c1SStefano Zampini   const PetscScalar *x;
1132eb1ec7c1SStefano Zampini 
1133eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1134eb1ec7c1SStefano Zampini   /* diagonal part */
1135eb1ec7c1SStefano Zampini   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1136eb1ec7c1SStefano Zampini   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1137eb1ec7c1SStefano Zampini 
1138eb1ec7c1SStefano Zampini   /* subdiagonal part */
1139*a3234186SStefano Zampini   if (!a->B->ops->multhermitiantranspose) SETERRQ1(PetscObjectComm((PetscObject)a->B),PETSC_ERR_SUP,"Not for type %s\n",((PetscObject)a->B)->type_name);
1140eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1141eb1ec7c1SStefano Zampini 
1142eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
1143eb1ec7c1SStefano Zampini   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1144eb1ec7c1SStefano Zampini   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1145eb1ec7c1SStefano Zampini   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1146eb1ec7c1SStefano Zampini   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1147eb1ec7c1SStefano Zampini 
1148eb1ec7c1SStefano Zampini   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1149eb1ec7c1SStefano Zampini   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1150eb1ec7c1SStefano Zampini   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1151eb1ec7c1SStefano Zampini 
1152eb1ec7c1SStefano Zampini   /* supperdiagonal part */
1153eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1154eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1155eb1ec7c1SStefano Zampini }
1156eb1ec7c1SStefano Zampini 
1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1158a30f8f8cSSatish Balay {
1159de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1160dfbe8321SBarry Smith   PetscErrorCode    ierr;
1161d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1162d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1163d9ca1df4SBarry Smith   const PetscScalar *x;
1164a9d4b620SHong Zhang 
1165a9d4b620SHong Zhang   PetscFunctionBegin;
1166a9d4b620SHong Zhang   /* diagonal part */
1167a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
11682dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1169a9d4b620SHong Zhang 
1170a9d4b620SHong Zhang   /* subdiagonal part */
1171a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1172a9d4b620SHong Zhang 
1173a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11741ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1175d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1176580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
11771ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1178a9d4b620SHong Zhang 
1179ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1180d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1181ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1182a9d4b620SHong Zhang 
1183a9d4b620SHong Zhang   /* supperdiagonal part */
1184a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1185a9d4b620SHong Zhang   PetscFunctionReturn(0);
1186a9d4b620SHong Zhang }
1187a9d4b620SHong Zhang 
1188a30f8f8cSSatish Balay /*
1189a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1190a30f8f8cSSatish Balay    diagonal block
1191a30f8f8cSSatish Balay */
1192dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1193a30f8f8cSSatish Balay {
1194a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1195dfbe8321SBarry Smith   PetscErrorCode ierr;
1196a30f8f8cSSatish Balay 
1197a30f8f8cSSatish Balay   PetscFunctionBegin;
1198e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1199a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1201a30f8f8cSSatish Balay }
1202a30f8f8cSSatish Balay 
1203f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1204a30f8f8cSSatish Balay {
1205a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1206dfbe8321SBarry Smith   PetscErrorCode ierr;
1207a30f8f8cSSatish Balay 
1208a30f8f8cSSatish Balay   PetscFunctionBegin;
1209f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1210f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1211a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1212a30f8f8cSSatish Balay }
1213a30f8f8cSSatish Balay 
12141302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1215a30f8f8cSSatish Balay {
1216d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1217d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1218d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1219d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1220d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1221899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1222d0d4cfc2SHong Zhang 
1223a30f8f8cSSatish Balay   PetscFunctionBegin;
1224e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1225d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1226d0d4cfc2SHong Zhang 
1227d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1228d0d4cfc2SHong Zhang     /*
1229d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1230d0d4cfc2SHong Zhang     */
1231d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1232d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1233d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1234d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1235d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
123626fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1237d0d4cfc2SHong Zhang     }
1238dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1239d0d4cfc2SHong Zhang   }
1240d0d4cfc2SHong Zhang 
1241e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1242d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1243d0d4cfc2SHong Zhang 
1244d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1245d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1246d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1247d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1248d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1249d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1250d0d4cfc2SHong Zhang 
1251d0d4cfc2SHong Zhang   cmap = mat->garray;
1252d0d4cfc2SHong Zhang   if (v  || idx) {
1253d0d4cfc2SHong Zhang     if (nztot) {
1254d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1255d0d4cfc2SHong Zhang       PetscInt imark = -1;
1256d0d4cfc2SHong Zhang       if (v) {
1257d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1258d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1259d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1260d0d4cfc2SHong Zhang           else break;
1261d0d4cfc2SHong Zhang         }
1262d0d4cfc2SHong Zhang         imark = i;
1263d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1264d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1265d0d4cfc2SHong Zhang       }
1266d0d4cfc2SHong Zhang       if (idx) {
1267d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1268d0d4cfc2SHong Zhang         if (imark > -1) {
1269d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1270d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1271d0d4cfc2SHong Zhang           }
1272d0d4cfc2SHong Zhang         } else {
1273d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
127426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1275d0d4cfc2SHong Zhang             else break;
1276d0d4cfc2SHong Zhang           }
1277d0d4cfc2SHong Zhang           imark = i;
1278d0d4cfc2SHong Zhang         }
1279d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1280d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1281d0d4cfc2SHong Zhang       }
1282d0d4cfc2SHong Zhang     } else {
1283d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1284d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1285d0d4cfc2SHong Zhang     }
1286d0d4cfc2SHong Zhang   }
1287d0d4cfc2SHong Zhang   *nz  = nztot;
1288d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1289d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1290a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1291a30f8f8cSSatish Balay }
1292a30f8f8cSSatish Balay 
12931302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1294a30f8f8cSSatish Balay {
1295a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1296a30f8f8cSSatish Balay 
1297a30f8f8cSSatish Balay   PetscFunctionBegin;
1298e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1299a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1300a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1301a30f8f8cSSatish Balay }
1302a30f8f8cSSatish Balay 
1303d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1304d0d4cfc2SHong Zhang {
1305d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1306d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1307d0d4cfc2SHong Zhang 
1308d0d4cfc2SHong Zhang   PetscFunctionBegin;
1309d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1310d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1311d0d4cfc2SHong Zhang }
1312d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1313d0d4cfc2SHong Zhang {
1314d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1315d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1316d0d4cfc2SHong Zhang 
1317d0d4cfc2SHong Zhang   PetscFunctionBegin;
1318d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1319d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1320d0d4cfc2SHong Zhang }
1321d0d4cfc2SHong Zhang 
132299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
132399cafbc1SBarry Smith {
132499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
132599cafbc1SBarry Smith   PetscErrorCode ierr;
132699cafbc1SBarry Smith 
132799cafbc1SBarry Smith   PetscFunctionBegin;
132899cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
132999cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
133099cafbc1SBarry Smith   PetscFunctionReturn(0);
133199cafbc1SBarry Smith }
133299cafbc1SBarry Smith 
133399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
133499cafbc1SBarry Smith {
133599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
133699cafbc1SBarry Smith   PetscErrorCode ierr;
133799cafbc1SBarry Smith 
133899cafbc1SBarry Smith   PetscFunctionBegin;
133999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
134099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
134199cafbc1SBarry Smith   PetscFunctionReturn(0);
134299cafbc1SBarry Smith }
134399cafbc1SBarry Smith 
13447dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
134536032a97SHong Zhang    Input: isrow       - distributed(parallel),
134636032a97SHong Zhang           iscol_local - locally owned (seq)
134736032a97SHong Zhang */
134836032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
13498f46ffcaSHong Zhang {
13508f46ffcaSHong Zhang   PetscErrorCode ierr;
13518f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
13528f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
135336032a97SHong Zhang 
135436032a97SHong Zhang   PetscFunctionBegin;
13558f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
13568f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
13571098a8e8SHong Zhang   if (sz1 > sz2) {
13581098a8e8SHong Zhang     *flg = PETSC_FALSE;
13591098a8e8SHong Zhang     PetscFunctionReturn(0);
13601098a8e8SHong Zhang   }
13618f46ffcaSHong Zhang 
13628f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
13638f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13648f46ffcaSHong Zhang 
13658f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
13668f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1367580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1368580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
13698f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
13708f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
13718f46ffcaSHong Zhang 
13728f46ffcaSHong Zhang   nmatch=0;
13738f46ffcaSHong Zhang   k     = 0;
13748f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
13758f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
13768f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13778f46ffcaSHong Zhang         k = j; nmatch++;
13788f46ffcaSHong Zhang         break;
13798f46ffcaSHong Zhang       }
13808f46ffcaSHong Zhang     }
13818f46ffcaSHong Zhang   }
13828f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
13838f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
13848f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
13858f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
13861098a8e8SHong Zhang   if (nmatch < sz1) {
13871098a8e8SHong Zhang     *flg = PETSC_FALSE;
13881098a8e8SHong Zhang   } else {
13891098a8e8SHong Zhang     *flg = PETSC_TRUE;
13901098a8e8SHong Zhang   }
139136032a97SHong Zhang   PetscFunctionReturn(0);
13928f46ffcaSHong Zhang }
139336032a97SHong Zhang 
13947dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
139536032a97SHong Zhang {
139636032a97SHong Zhang   PetscErrorCode ierr;
139736032a97SHong Zhang   IS             iscol_local;
139836032a97SHong Zhang   PetscInt       csize;
139936032a97SHong Zhang   PetscBool      isequal;
140036032a97SHong Zhang 
140136032a97SHong Zhang   PetscFunctionBegin;
140236032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
140336032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
140436032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
140536032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
140636032a97SHong Zhang   } else {
140736032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
140836032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
140936032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
14108f46ffcaSHong Zhang   }
14118f46ffcaSHong Zhang 
14127dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
14137dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
14148f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
14158f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
14168f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
14178f46ffcaSHong Zhang   }
14188f46ffcaSHong Zhang   PetscFunctionReturn(0);
14198f46ffcaSHong Zhang }
14208f46ffcaSHong Zhang 
1421dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1422a30f8f8cSSatish Balay {
1423a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1424dfbe8321SBarry Smith   PetscErrorCode ierr;
1425a30f8f8cSSatish Balay 
1426a30f8f8cSSatish Balay   PetscFunctionBegin;
1427a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1428a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1429a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1430a30f8f8cSSatish Balay }
1431a30f8f8cSSatish Balay 
1432dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1433a30f8f8cSSatish Balay {
1434a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1435a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1436dfbe8321SBarry Smith   PetscErrorCode ierr;
14373966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
1438a30f8f8cSSatish Balay 
1439a30f8f8cSSatish Balay   PetscFunctionBegin;
1440d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
144126fbe8dcSKarl Rupp 
1442a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
144326fbe8dcSKarl Rupp 
1444a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1445a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
144626fbe8dcSKarl Rupp 
1447a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
144826fbe8dcSKarl Rupp 
1449a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1450a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1451a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1452a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1453a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1454a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1455a30f8f8cSSatish Balay     info->memory       = isend[3];
1456a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1457a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14583966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
145926fbe8dcSKarl Rupp 
1460a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1461a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1462a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1463a30f8f8cSSatish Balay     info->memory       = irecv[3];
1464a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1465a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14663966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
146726fbe8dcSKarl Rupp 
1468a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1469a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1470a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1471a30f8f8cSSatish Balay     info->memory       = irecv[3];
1472a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1473f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1474a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1475a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1476a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1477a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1478a30f8f8cSSatish Balay }
1479a30f8f8cSSatish Balay 
1480ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1481a30f8f8cSSatish Balay {
1482a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1483d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1484dfbe8321SBarry Smith   PetscErrorCode ierr;
1485a30f8f8cSSatish Balay 
1486a30f8f8cSSatish Balay   PetscFunctionBegin;
1487e98b92d7SKris Buschelman   switch (op) {
1488512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1489e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
149028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1491a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1492c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1493e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
149443674050SBarry Smith     MatCheckPreallocated(A,1);
14954e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14964e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1497e98b92d7SKris Buschelman     break;
1498e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
149943674050SBarry Smith     MatCheckPreallocated(A,1);
15004e0d8c25SBarry Smith     a->roworiented = flg;
150126fbe8dcSKarl Rupp 
15024e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15034e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1504e98b92d7SKris Buschelman     break;
15054e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1506071fcb05SBarry Smith   case MAT_SORTED_FULL:
1507290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1508e98b92d7SKris Buschelman     break;
1509e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15104e0d8c25SBarry Smith     a->donotstash = flg;
1511e98b92d7SKris Buschelman     break;
1512e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
15134e0d8c25SBarry Smith     a->ht_flag = flg;
1514e98b92d7SKris Buschelman     break;
15159a4540c5SBarry Smith   case MAT_HERMITIAN:
151643674050SBarry Smith     MatCheckPreallocated(A,1);
1517eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15180f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1519eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1520547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1521eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1522eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1523eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1524eb1ec7c1SStefano Zampini       A->symmetric = PETSC_FALSE;
1525eb1ec7c1SStefano Zampini     }
15260f2140c7SStefano Zampini #endif
1527eeffb40dSHong Zhang     break;
1528ffa07934SHong Zhang   case MAT_SPD:
152977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
153043674050SBarry Smith     MatCheckPreallocated(A,1);
1531eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1532eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1533eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1534eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1535eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1536eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1537eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1538eb1ec7c1SStefano Zampini     }
1539eb1ec7c1SStefano Zampini #endif
1540eeffb40dSHong Zhang     break;
154177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
154243674050SBarry Smith     MatCheckPreallocated(A,1);
1543eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1544eeffb40dSHong Zhang     break;
15459a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1546e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1547290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
154877e54ba9SKris Buschelman     break;
1549d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
15504e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1551d0d4cfc2SHong Zhang     break;
1552d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
15534e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1554d0d4cfc2SHong Zhang     break;
1555d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
15564e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1557d0d4cfc2SHong Zhang     break;
1558e98b92d7SKris Buschelman   default:
1559e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1560a30f8f8cSSatish Balay   }
1561a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1562a30f8f8cSSatish Balay }
1563a30f8f8cSSatish Balay 
1564fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1565a30f8f8cSSatish Balay {
1566dfbe8321SBarry Smith   PetscErrorCode ierr;
15676e111a19SKarl Rupp 
1568a30f8f8cSSatish Balay   PetscFunctionBegin;
1569cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1570999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1571cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1572cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1573fc4dec0aSBarry Smith   }
15748115998fSBarry Smith   PetscFunctionReturn(0);
1575a30f8f8cSSatish Balay }
1576a30f8f8cSSatish Balay 
1577dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1578a30f8f8cSSatish Balay {
1579a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1580a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1581dfbe8321SBarry Smith   PetscErrorCode ierr;
15825e90f9d9SHong Zhang   PetscInt       nv,m,n;
1583ace3abfcSBarry Smith   PetscBool      flg;
1584a30f8f8cSSatish Balay 
1585a30f8f8cSSatish Balay   PetscFunctionBegin;
1586a30f8f8cSSatish Balay   if (ll != rr) {
1587b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1588e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1589a30f8f8cSSatish Balay   }
1590b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1591b3bf805bSHong Zhang 
15925e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1593e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1594b3bf805bSHong Zhang 
15955e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1596e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
15975e90f9d9SHong Zhang 
1598ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
15995e90f9d9SHong Zhang 
16005e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
16010298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16025e90f9d9SHong Zhang 
16035e90f9d9SHong Zhang   /* scale the diagonal part */
1604a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1605a30f8f8cSSatish Balay 
16065e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1607ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16080298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1609a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1610a30f8f8cSSatish Balay }
1611a30f8f8cSSatish Balay 
1612dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1613a30f8f8cSSatish Balay {
1614f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1615dfbe8321SBarry Smith   PetscErrorCode ierr;
1616a30f8f8cSSatish Balay 
1617a30f8f8cSSatish Balay   PetscFunctionBegin;
1618a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1619a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1620a30f8f8cSSatish Balay }
1621a30f8f8cSSatish Balay 
16226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1623a30f8f8cSSatish Balay 
1624ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1625a30f8f8cSSatish Balay {
1626a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1627a30f8f8cSSatish Balay   Mat            a,b,c,d;
1628ace3abfcSBarry Smith   PetscBool      flg;
1629dfbe8321SBarry Smith   PetscErrorCode ierr;
1630a30f8f8cSSatish Balay 
1631a30f8f8cSSatish Balay   PetscFunctionBegin;
1632a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1633a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1634a30f8f8cSSatish Balay 
1635a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1636abc0a331SBarry Smith   if (flg) {
1637a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1638a30f8f8cSSatish Balay   }
1639b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1640a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1641a30f8f8cSSatish Balay }
1642a30f8f8cSSatish Balay 
16433c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
16443c896bc6SHong Zhang {
16453c896bc6SHong Zhang   PetscErrorCode ierr;
16464c7a3774SStefano Zampini   PetscBool      isbaij;
16473c896bc6SHong Zhang 
16483c896bc6SHong Zhang   PetscFunctionBegin;
16494c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
16504c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
16513c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16523c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1653d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
16543c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1655d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
16563c896bc6SHong Zhang   } else {
16574c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
16584c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
16594c7a3774SStefano Zampini 
16603c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
16613c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
16623c896bc6SHong Zhang   }
1663cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
16643c896bc6SHong Zhang   PetscFunctionReturn(0);
16653c896bc6SHong Zhang }
16663c896bc6SHong Zhang 
16674994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1668273d9f13SBarry Smith {
1669dfbe8321SBarry Smith   PetscErrorCode ierr;
1670273d9f13SBarry Smith 
1671273d9f13SBarry Smith   PetscFunctionBegin;
1672535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1673273d9f13SBarry Smith   PetscFunctionReturn(0);
1674273d9f13SBarry Smith }
1675a5e6ed63SBarry Smith 
16764fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
16774fe895cdSHong Zhang {
16784fe895cdSHong Zhang   PetscErrorCode ierr;
16794fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
16804fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
16814fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
16824fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
16834fe895cdSHong Zhang 
16844fe895cdSHong Zhang   PetscFunctionBegin;
16854fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
16864fe895cdSHong Zhang     PetscScalar alpha = a;
16874fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
16884fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1689c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
16908b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
16914fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
16924fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1693c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
16948b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1695a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1696ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1697ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1698ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1699ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
17004fe895cdSHong Zhang   } else {
17014de5dceeSHong Zhang     Mat      B;
17024de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
17034de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1704d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
17054de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
17064de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
17074de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
17084de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
17094de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
17104de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
17114de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
17124de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
17134de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
17144de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
17154de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
17164de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
171728be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
17184de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
17194de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1720d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
17214de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
17224fe895cdSHong Zhang   }
17234fe895cdSHong Zhang   PetscFunctionReturn(0);
17244fe895cdSHong Zhang }
17254fe895cdSHong Zhang 
17267dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1727a5e6ed63SBarry Smith {
17286849ba73SBarry Smith   PetscErrorCode ierr;
17291302d50aSBarry Smith   PetscInt       i;
1730afebec48SHong Zhang   PetscBool      flg;
1731a5e6ed63SBarry Smith 
17326849ba73SBarry Smith   PetscFunctionBegin;
17337dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1734a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1735a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1736afebec48SHong Zhang     if (!flg) {
1737b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1738a5e6ed63SBarry Smith     }
17394dcd73b1SHong Zhang   }
1740a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1741a5e6ed63SBarry Smith }
1742a5e6ed63SBarry Smith 
17437d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
17447d68702bSBarry Smith {
17457d68702bSBarry Smith   PetscErrorCode ierr;
17467d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
17476f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
17487d68702bSBarry Smith 
17497d68702bSBarry Smith   PetscFunctionBegin;
17506f33a894SBarry Smith   if (!Y->preallocated) {
17517d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
17526f33a894SBarry Smith   } else if (!aij->nz) {
1753b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17546f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1755b83222d8SBarry Smith     aij->nonew = nonew;
17567d68702bSBarry Smith   }
17577d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
17587d68702bSBarry Smith   PetscFunctionReturn(0);
17597d68702bSBarry Smith }
17607d68702bSBarry Smith 
17613b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
17623b49f96aSBarry Smith {
17633b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
17643b49f96aSBarry Smith   PetscErrorCode ierr;
17653b49f96aSBarry Smith 
17663b49f96aSBarry Smith   PetscFunctionBegin;
17673b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
17683b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
17693b49f96aSBarry Smith   if (d) {
17703b49f96aSBarry Smith     PetscInt rstart;
17713b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
17723b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
17733b49f96aSBarry Smith 
17743b49f96aSBarry Smith   }
17753b49f96aSBarry Smith   PetscFunctionReturn(0);
17763b49f96aSBarry Smith }
17773b49f96aSBarry Smith 
1778a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
1779a5b7ff6bSBarry Smith {
1780a5b7ff6bSBarry Smith   PetscFunctionBegin;
1781a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
1782a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
1783a5b7ff6bSBarry Smith }
17843b49f96aSBarry Smith 
1785a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
17863964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1787a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1788a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1789a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
179097304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
1791431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1792431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1793a30f8f8cSSatish Balay                                        0,
1794a30f8f8cSSatish Balay                                        0,
1795a30f8f8cSSatish Balay                                        0,
179697304618SKris Buschelman                                /* 10*/ 0,
1797a30f8f8cSSatish Balay                                        0,
1798a30f8f8cSSatish Balay                                        0,
179941f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1800a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
180197304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
1802a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1803a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1804a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1805a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
180697304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
1807a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1808a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1809a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1810d519adbfSMatthew Knepley                                /* 24*/ 0,
1811a30f8f8cSSatish Balay                                        0,
1812a30f8f8cSSatish Balay                                        0,
1813a30f8f8cSSatish Balay                                        0,
1814a30f8f8cSSatish Balay                                        0,
18154994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
1816b5df2d14SHong Zhang                                        0,
1817a30f8f8cSSatish Balay                                        0,
1818a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1819a30f8f8cSSatish Balay                                        0,
1820d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
1821a30f8f8cSSatish Balay                                        0,
1822a30f8f8cSSatish Balay                                        0,
1823a30f8f8cSSatish Balay                                        0,
1824a30f8f8cSSatish Balay                                        0,
1825d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
18267dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1827d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1828a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18293c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1830d519adbfSMatthew Knepley                                /* 44*/ 0,
1831a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18327d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1833a30f8f8cSSatish Balay                                        0,
1834a30f8f8cSSatish Balay                                        0,
1835f73d5cc4SBarry Smith                                /* 49*/ 0,
1836a30f8f8cSSatish Balay                                        0,
1837a30f8f8cSSatish Balay                                        0,
1838a30f8f8cSSatish Balay                                        0,
1839a30f8f8cSSatish Balay                                        0,
1840d519adbfSMatthew Knepley                                /* 54*/ 0,
1841a30f8f8cSSatish Balay                                        0,
1842a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1843a30f8f8cSSatish Balay                                        0,
1844a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18457dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1846a30f8f8cSSatish Balay                                        0,
1847a30f8f8cSSatish Balay                                        0,
1848357abbc8SBarry Smith                                        0,
184924d5174aSHong Zhang                                        0,
1850d519adbfSMatthew Knepley                                /* 64*/ 0,
185124d5174aSHong Zhang                                        0,
185224d5174aSHong Zhang                                        0,
185324d5174aSHong Zhang                                        0,
185424d5174aSHong Zhang                                        0,
1855d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
185624d5174aSHong Zhang                                        0,
185728d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
185897304618SKris Buschelman                                        0,
185997304618SKris Buschelman                                        0,
1860d519adbfSMatthew Knepley                                /* 74*/ 0,
186197304618SKris Buschelman                                        0,
186297304618SKris Buschelman                                        0,
186397304618SKris Buschelman                                        0,
186497304618SKris Buschelman                                        0,
1865d519adbfSMatthew Knepley                                /* 79*/ 0,
186697304618SKris Buschelman                                        0,
186797304618SKris Buschelman                                        0,
186897304618SKris Buschelman                                        0,
18695bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1870d519adbfSMatthew Knepley                                /* 84*/ 0,
1871865e5f61SKris Buschelman                                        0,
1872865e5f61SKris Buschelman                                        0,
1873865e5f61SKris Buschelman                                        0,
1874865e5f61SKris Buschelman                                        0,
1875d519adbfSMatthew Knepley                                /* 89*/ 0,
1876865e5f61SKris Buschelman                                        0,
1877865e5f61SKris Buschelman                                        0,
1878865e5f61SKris Buschelman                                        0,
1879865e5f61SKris Buschelman                                        0,
1880d519adbfSMatthew Knepley                                /* 94*/ 0,
1881865e5f61SKris Buschelman                                        0,
1882865e5f61SKris Buschelman                                        0,
188399cafbc1SBarry Smith                                        0,
188499cafbc1SBarry Smith                                        0,
1885d519adbfSMatthew Knepley                                /* 99*/ 0,
188699cafbc1SBarry Smith                                        0,
188799cafbc1SBarry Smith                                        0,
188899cafbc1SBarry Smith                                        0,
188999cafbc1SBarry Smith                                        0,
1890d519adbfSMatthew Knepley                                /*104*/ 0,
189199cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1892d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1893d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
189495936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
189595936485SShri Abhyankar                                /*109*/ 0,
189695936485SShri Abhyankar                                        0,
189795936485SShri Abhyankar                                        0,
189895936485SShri Abhyankar                                        0,
18993b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
190095936485SShri Abhyankar                                /*114*/ 0,
190195936485SShri Abhyankar                                        0,
190295936485SShri Abhyankar                                        0,
190395936485SShri Abhyankar                                        0,
190495936485SShri Abhyankar                                        0,
190595936485SShri Abhyankar                                /*119*/ 0,
190695936485SShri Abhyankar                                        0,
190795936485SShri Abhyankar                                        0,
19083964eb88SJed Brown                                        0,
19093964eb88SJed Brown                                        0,
19103964eb88SJed Brown                                /*124*/ 0,
19113964eb88SJed Brown                                        0,
19123964eb88SJed Brown                                        0,
19133964eb88SJed Brown                                        0,
19143964eb88SJed Brown                                        0,
19153964eb88SJed Brown                                /*129*/ 0,
19163964eb88SJed Brown                                        0,
19173964eb88SJed Brown                                        0,
19183964eb88SJed Brown                                        0,
19193964eb88SJed Brown                                        0,
19203964eb88SJed Brown                                /*134*/ 0,
19213964eb88SJed Brown                                        0,
19223964eb88SJed Brown                                        0,
19233964eb88SJed Brown                                        0,
19243964eb88SJed Brown                                        0,
192546533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
1926f9426fe0SMark Adams                                        0,
192759f5e6ceSHong Zhang                                        0,
192859f5e6ceSHong Zhang                                        0,
192959f5e6ceSHong Zhang                                        0,
193059f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
193199cafbc1SBarry Smith };
1932a30f8f8cSSatish Balay 
1933b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
1934a23d5eceSKris Buschelman {
1935476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
1936dfbe8321SBarry Smith   PetscErrorCode ierr;
1937535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
19385d2a9ed1SStefano Zampini   PetscMPIInt    size;
1939a23d5eceSKris Buschelman 
1940a23d5eceSKris Buschelman   PetscFunctionBegin;
194133d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
194226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
194326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1944e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1945476417e5SBarry Smith   if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N);
1946476417e5SBarry Smith   if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n);
1947899cda47SBarry Smith 
1948d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1949d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1950c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1951a23d5eceSKris Buschelman 
1952d0f46423SBarry Smith   B->rmap->bs = bs;
1953a23d5eceSKris Buschelman   b->bs2      = bs*bs;
1954a23d5eceSKris Buschelman   b->mbs      = mbs;
1955a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1956de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
1957de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
1958a23d5eceSKris Buschelman 
1959a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1960d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1961a23d5eceSKris Buschelman   }
1962d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1963d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1964a23d5eceSKris Buschelman 
1965d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1966d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1967a23d5eceSKris Buschelman 
1968cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1969cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
1970cb7b82ddSBarry Smith #else
1971cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
1972cb7b82ddSBarry Smith #endif
1973cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
1974cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
1975cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
1976cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
1977cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
1978cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
1979cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
1980cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
1981cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
1982cb7b82ddSBarry Smith 
1983cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
19845d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
1985cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
1986cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
19875d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
1988cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1989cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1990cb7b82ddSBarry Smith 
1991526dfc15SBarry Smith   if (!B->preallocated) {
1992f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1993d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
19949c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
19953bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1996ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
1997526dfc15SBarry Smith   }
1998a23d5eceSKris Buschelman 
1999526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2000526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
200126fbe8dcSKarl Rupp 
2002526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2003cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2004cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2005a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2006a23d5eceSKris Buschelman }
2007a23d5eceSKris Buschelman 
2008dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2009dfb205c3SBarry Smith {
201002106b30SBarry Smith   PetscInt       m,rstart,cend;
20110cd7f59aSBarry Smith   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0;
2012dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2013dfb205c3SBarry Smith   PetscScalar    *values=0;
2014bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
2015dfb205c3SBarry Smith   PetscErrorCode ierr;
20163bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2017dfb205c3SBarry Smith 
2018dfb205c3SBarry Smith   PetscFunctionBegin;
2019ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2020dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2021dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2022dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2023dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2024e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2025dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2026dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2027dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2028dfb205c3SBarry Smith 
2029dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2030dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2031dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2032dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2033dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
20340cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2035dfb205c3SBarry Smith     JJ     = jj + ii[i];
20360cd7f59aSBarry Smith     bd     = 0;
2037dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
20380cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2039dfb205c3SBarry Smith       JJ++;
20400cd7f59aSBarry Smith       bd++;
2041dfb205c3SBarry Smith     }
2042dfb205c3SBarry Smith     d  = 0;
2043dfb205c3SBarry Smith     for (; j<nz; j++) {
2044dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2045dfb205c3SBarry Smith       d++;
2046dfb205c3SBarry Smith     }
2047dfb205c3SBarry Smith     d_nnz[i] = d;
20480cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20490cd7f59aSBarry Smith     nz       = nz - bd;
20500cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2051dfb205c3SBarry Smith   }
2052dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2053bb80cfbbSStefano Zampini   ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2054dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2055dfb205c3SBarry Smith 
2056dfb205c3SBarry Smith   values = (PetscScalar*)V;
2057dfb205c3SBarry Smith   if (!values) {
2058580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2059dfb205c3SBarry Smith   }
2060dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2061dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2062dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2063dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2064bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2065dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2066dfb205c3SBarry Smith       ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2067bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2068bb80cfbbSStefano Zampini       PetscInt j;
20690cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
20700cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
20710cd7f59aSBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
20720cd7f59aSBarry Smith       }
20730cd7f59aSBarry Smith     }
2074dfb205c3SBarry Smith   }
2075dfb205c3SBarry Smith 
2076dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
20773bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
20783bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2079dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2080dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20813bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
20823bd0feecSPierre Jolivet 
20837827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2084dfb205c3SBarry Smith   PetscFunctionReturn(0);
2085dfb205c3SBarry Smith }
2086dfb205c3SBarry Smith 
20870bad9183SKris Buschelman /*MC
2088fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2089828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2090828413b8SBarry Smith    the matrix is stored.
2091828413b8SBarry Smith 
2092828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2093828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
20940bad9183SKris Buschelman 
20950bad9183SKris Buschelman    Options Database Keys:
20960bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
20970bad9183SKris Buschelman 
2098476417e5SBarry Smith    Notes:
2099476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2100476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2101476417e5SBarry Smith 
21020bad9183SKris Buschelman    Level: beginner
21030bad9183SKris Buschelman 
2104fd292e60Sprj- .seealso: MatCreateBAIJ(), MATSEQSBAIJ, MatType
21050bad9183SKris Buschelman M*/
21060bad9183SKris Buschelman 
21078cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2108b5df2d14SHong Zhang {
2109b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2110dfbe8321SBarry Smith   PetscErrorCode ierr;
211194ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2112b5df2d14SHong Zhang 
2113b5df2d14SHong Zhang   PetscFunctionBegin;
2114b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2115b0a32e0cSBarry Smith   B->data = (void*)b;
2116b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2117b5df2d14SHong Zhang 
2118b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2119b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2120b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2121b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
212226fbe8dcSKarl Rupp 
2123ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2124ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2125b5df2d14SHong Zhang 
2126b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2127854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2128b5df2d14SHong Zhang 
2129b5df2d14SHong Zhang   /* build cache for off array entries formed */
2130ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
213126fbe8dcSKarl Rupp 
2132b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21330298fd71SBarry Smith   b->colmap      = NULL;
21340298fd71SBarry Smith   b->garray      = NULL;
2135b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2136b5df2d14SHong Zhang 
2137b5df2d14SHong Zhang   /* stuff used in block assembly */
2138b5df2d14SHong Zhang   b->barray = 0;
2139b5df2d14SHong Zhang 
2140b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2141b5df2d14SHong Zhang   b->lvec    = 0;
2142b5df2d14SHong Zhang   b->Mvctx   = 0;
214340781036SHong Zhang   b->slvec0  = 0;
214440781036SHong Zhang   b->slvec0b = 0;
214540781036SHong Zhang   b->slvec1  = 0;
214640781036SHong Zhang   b->slvec1a = 0;
214740781036SHong Zhang   b->slvec1b = 0;
214840781036SHong Zhang   b->sMvctx  = 0;
2149b5df2d14SHong Zhang 
2150b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2151b5df2d14SHong Zhang   b->rowindices   = 0;
2152b5df2d14SHong Zhang   b->rowvalues    = 0;
2153b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2154b5df2d14SHong Zhang 
2155b5df2d14SHong Zhang   /* hash table stuff */
2156b5df2d14SHong Zhang   b->ht           = 0;
2157b5df2d14SHong Zhang   b->hd           = 0;
2158b5df2d14SHong Zhang   b->ht_size      = 0;
2159b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2160b5df2d14SHong Zhang   b->ht_fact      = 0;
2161b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2162b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2163b5df2d14SHong Zhang 
21647dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21657a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21667a868f3eSHong Zhang 
216759ffdab8SBarry Smith   b->in_loc = 0;
216859ffdab8SBarry Smith   b->v_loc  = 0;
216959ffdab8SBarry Smith   b->n_loc  = 0;
217094ae4db5SBarry Smith 
2171bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2172bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2173bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2174bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
21756214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21766214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
21776214f412SHong Zhang #endif
2178d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2179d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK);CHKERRQ(ierr);
2180d24d4204SJose E. Roman #endif
218128d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
218228d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
2183aa5a9175SDahai Guo 
218423ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
218523ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
218623ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
218723ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
21889899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
2189eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
219013647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
219113647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
2192eb1ec7c1SStefano Zampini #else
2193eb1ec7c1SStefano Zampini   B->hermitian                  = PETSC_TRUE;
2194eb1ec7c1SStefano Zampini   B->hermitian_set              = PETSC_TRUE;
2195eb1ec7c1SStefano Zampini #endif
219613647f61SHong Zhang 
219717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
219894ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
219994ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
220094ae4db5SBarry Smith   if (flg) {
220194ae4db5SBarry Smith     PetscReal fact = 1.39;
220294ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
220394ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
220494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
220594ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
220694ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
220794ae4db5SBarry Smith   }
220894ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2209b5df2d14SHong Zhang   PetscFunctionReturn(0);
2210b5df2d14SHong Zhang }
2211b5df2d14SHong Zhang 
2212209238afSKris Buschelman /*MC
2213002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2214209238afSKris Buschelman 
2215209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2216209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2217209238afSKris Buschelman 
2218209238afSKris Buschelman    Options Database Keys:
2219209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2220209238afSKris Buschelman 
2221209238afSKris Buschelman   Level: beginner
2222209238afSKris Buschelman 
2223209238afSKris Buschelman .seealso: MatCreateMPISBAIJ, MATSEQSBAIJ, MATMPISBAIJ
2224209238afSKris Buschelman M*/
2225209238afSKris Buschelman 
2226b5df2d14SHong Zhang /*@C
2227b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2228b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2229b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2230b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2231b5df2d14SHong Zhang 
2232b5df2d14SHong Zhang    Collective on Mat
2233b5df2d14SHong Zhang 
2234b5df2d14SHong Zhang    Input Parameters:
22351c4f3114SJed Brown +  B - the matrix
2236bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2237bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2238b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2239b5df2d14SHong Zhang            submatrix  (same for all local rows)
2240b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
22416d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22420298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
224395742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2244b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2245b5df2d14SHong Zhang            submatrix (same for all local rows).
2246b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2247c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22480298fd71SBarry Smith            (possibly different for each block row) or NULL.
2249b5df2d14SHong Zhang 
2250b5df2d14SHong Zhang 
2251b5df2d14SHong Zhang    Options Database Keys:
2252a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2253b5df2d14SHong Zhang                      block calculations (much slower)
2254a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2255b5df2d14SHong Zhang 
2256b5df2d14SHong Zhang    Notes:
2257b5df2d14SHong Zhang 
2258b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2259b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2260b5df2d14SHong Zhang 
226149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
226249a6f317SBarry Smith 
2263b5df2d14SHong Zhang    Storage Information:
2264b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2265b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2266b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2267b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2268b5df2d14SHong Zhang 
2269b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2270b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
22710298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2272b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2273b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2274b5df2d14SHong Zhang 
2275aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2276aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2277aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2278aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2279aa95bbe8SBarry Smith 
2280b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2281b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2282b5df2d14SHong Zhang 
2283b5df2d14SHong Zhang .vb
2284b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2285a4b1a0f6SJed Brown           --------------------------
2286c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2287c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2288c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2289a4b1a0f6SJed Brown           --------------------------
2290b5df2d14SHong Zhang .ve
2291b5df2d14SHong Zhang 
2292b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2293b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
22946d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
22956d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2296b5df2d14SHong Zhang 
22976d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
22986d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2299c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2300c2fc9fa9SBarry Smith 
2301b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2302b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2303b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2304b5df2d14SHong Zhang    matrices.
2305b5df2d14SHong Zhang 
2306b5df2d14SHong Zhang    Level: intermediate
2307b5df2d14SHong Zhang 
2308ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2309b5df2d14SHong Zhang @*/
23107087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2311b5df2d14SHong Zhang {
23124ac538c5SBarry Smith   PetscErrorCode ierr;
2313b5df2d14SHong Zhang 
2314b5df2d14SHong Zhang   PetscFunctionBegin;
23156ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
23166ba663aaSJed Brown   PetscValidType(B,1);
23176ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
23184ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2319b5df2d14SHong Zhang   PetscFunctionReturn(0);
2320b5df2d14SHong Zhang }
2321b5df2d14SHong Zhang 
2322a30f8f8cSSatish Balay /*@C
232369b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2324a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2325a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2326a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2327a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2328a30f8f8cSSatish Balay 
2329d083f849SBarry Smith    Collective
2330a30f8f8cSSatish Balay 
2331a30f8f8cSSatish Balay    Input Parameters:
2332a30f8f8cSSatish Balay +  comm - MPI communicator
2333bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2334bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2335a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2336a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2337a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2338a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2339a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2340a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2341a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2342a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2343a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2344a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2345a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
23466d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23470298fd71SBarry Smith            (possibly different for each block block row) or NULL.
234895742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
234995742e49SBarry Smith            set its value even if it is zero.
2350a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2351a30f8f8cSSatish Balay            submatrix (same for all local rows).
2352a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2353a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23540298fd71SBarry Smith            each block row) or NULL.
2355a30f8f8cSSatish Balay 
2356a30f8f8cSSatish Balay    Output Parameter:
2357a30f8f8cSSatish Balay .  A - the matrix
2358a30f8f8cSSatish Balay 
2359a30f8f8cSSatish Balay    Options Database Keys:
2360a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2361a30f8f8cSSatish Balay                      block calculations (much slower)
2362a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2363a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2364a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2365a30f8f8cSSatish Balay 
2366175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2367f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2368175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2369175b88e8SBarry Smith 
2370a30f8f8cSSatish Balay    Notes:
2371d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
23726d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2373d1be2dadSMatthew Knepley 
2374a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2375a30f8f8cSSatish Balay    (possibly both).
2376a30f8f8cSSatish Balay 
2377a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2378a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2379a30f8f8cSSatish Balay 
238049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
238149a6f317SBarry Smith 
2382a30f8f8cSSatish Balay    Storage Information:
2383a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2384a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2385a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2386a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2389a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
23900298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2391a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2392a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2393a30f8f8cSSatish Balay 
2394a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2395a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2396a30f8f8cSSatish Balay 
2397a30f8f8cSSatish Balay .vb
2398a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2399a4b1a0f6SJed Brown           --------------------------
2400c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2401c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2402c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2403a4b1a0f6SJed Brown           --------------------------
2404a30f8f8cSSatish Balay .ve
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2407a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
24086d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
24096d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2410a30f8f8cSSatish Balay 
24116d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
24126d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2413a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2414a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2415a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2416a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2417a30f8f8cSSatish Balay    matrices.
2418a30f8f8cSSatish Balay 
2419a30f8f8cSSatish Balay    Level: intermediate
2420a30f8f8cSSatish Balay 
242169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2422a30f8f8cSSatish Balay @*/
2423a30f8f8cSSatish Balay 
242469b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2425a30f8f8cSSatish Balay {
24266849ba73SBarry Smith   PetscErrorCode ierr;
24271302d50aSBarry Smith   PetscMPIInt    size;
2428a30f8f8cSSatish Balay 
2429a30f8f8cSSatish Balay   PetscFunctionBegin;
2430f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2431f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2432273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2433273d9f13SBarry Smith   if (size > 1) {
2434b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2435b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2436273d9f13SBarry Smith   } else {
2437273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2438273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2439273d9f13SBarry Smith   }
2440a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2441a30f8f8cSSatish Balay }
2442a30f8f8cSSatish Balay 
2443a30f8f8cSSatish Balay 
24446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2445a30f8f8cSSatish Balay {
2446a30f8f8cSSatish Balay   Mat            mat;
2447a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2448dfbe8321SBarry Smith   PetscErrorCode ierr;
2449d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2450387bc808SHong Zhang   PetscScalar    *array;
2451a30f8f8cSSatish Balay 
2452a30f8f8cSSatish Balay   PetscFunctionBegin;
2453a30f8f8cSSatish Balay   *newmat = 0;
245426fbe8dcSKarl Rupp 
2455ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2456d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
24577adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24581e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
24591e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2460e1b6402fSHong Zhang 
2461d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2462273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
246382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24647fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24657fff6886SHong Zhang 
2466b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2467a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2468a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2469a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2470a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2471a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2472a30f8f8cSSatish Balay 
2473a30f8f8cSSatish Balay   a->size         = oldmat->size;
2474a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2475a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2476a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2477a30f8f8cSSatish Balay   a->rowindices   = 0;
2478a30f8f8cSSatish Balay   a->rowvalues    = 0;
2479a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2480a30f8f8cSSatish Balay   a->barray       = 0;
2481899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2482899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2483899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2484899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2485a30f8f8cSSatish Balay 
2486a30f8f8cSSatish Balay   /* hash table stuff */
2487a30f8f8cSSatish Balay   a->ht           = 0;
2488a30f8f8cSSatish Balay   a->hd           = 0;
2489a30f8f8cSSatish Balay   a->ht_size      = 0;
2490a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2491a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2492a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2493a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2494a30f8f8cSSatish Balay 
2495580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2496a30f8f8cSSatish Balay   if (oldmat->colmap) {
2497a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2498a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2499a30f8f8cSSatish Balay #else
2500854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
25013bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2502580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2503a30f8f8cSSatish Balay #endif
2504a30f8f8cSSatish Balay   } else a->colmap = 0;
2505387bc808SHong Zhang 
2506a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2507785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
25083bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2509580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2510a30f8f8cSSatish Balay   } else a->garray = 0;
2511a30f8f8cSSatish Balay 
2512ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2513a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
25143bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2515a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
25163bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
251782327fa8SHong Zhang 
251882327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
25193bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
252082327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
25213bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2522387bc808SHong Zhang 
2523387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
25241ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2525778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2526778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
25271ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
25281ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2529778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
25301ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
25313bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
25323bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
25333bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
25343bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
25353bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2536387bc808SHong Zhang 
2537387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2538387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2539387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
25403bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
254182327fa8SHong Zhang 
2542a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
25433bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2544a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
25453bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2546140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2547a30f8f8cSSatish Balay   *newmat = mat;
2548a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2549a30f8f8cSSatish Balay }
2550a30f8f8cSSatish Balay 
2551618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2552618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2553618cc2edSLisandro Dalcin 
2554618cc2edSLisandro Dalcin PetscErrorCode MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer)
255595936485SShri Abhyankar {
255695936485SShri Abhyankar   PetscErrorCode ierr;
25577f489da9SVaclav Hapla   PetscBool      isbinary;
255895936485SShri Abhyankar 
255995936485SShri Abhyankar   PetscFunctionBegin;
25607f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
2561618cc2edSLisandro Dalcin   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
2562618cc2edSLisandro Dalcin   ierr = MatLoad_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
256395936485SShri Abhyankar   PetscFunctionReturn(0);
256495936485SShri Abhyankar }
256595936485SShri Abhyankar 
2566dcf5cc72SBarry Smith /*XXXXX@
2567a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2568a30f8f8cSSatish Balay 
2569a30f8f8cSSatish Balay    Input Parameters:
2570a30f8f8cSSatish Balay .  mat  - the matrix
2571a30f8f8cSSatish Balay .  fact - factor
2572a30f8f8cSSatish Balay 
2573c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
2574a30f8f8cSSatish Balay 
2575a30f8f8cSSatish Balay    Level: advanced
2576a30f8f8cSSatish Balay 
2577a30f8f8cSSatish Balay   Notes:
2578a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2579a30f8f8cSSatish Balay 
2580a30f8f8cSSatish Balay .seealso: MatSetOption()
2581dcf5cc72SBarry Smith @XXXXX*/
2582dcf5cc72SBarry Smith 
258324d5174aSHong Zhang 
2584985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
258524d5174aSHong Zhang {
258624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2587f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2588ca54ac64SHong Zhang   PetscReal      atmp;
258987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2590dfbe8321SBarry Smith   PetscErrorCode ierr;
25911302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
25921302d50aSBarry Smith   PetscMPIInt    rank,size;
25931302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
259487828ca2SBarry Smith   PetscScalar    *va;
25958a1c53f2SBarry Smith   MatScalar      *ba;
2596f4c0e9e4SHong Zhang   MPI_Status     stat;
259724d5174aSHong Zhang 
259824d5174aSHong Zhang   PetscFunctionBegin;
2599e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
26000298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
26011ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2602f4c0e9e4SHong Zhang 
2603ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2604ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2605f4c0e9e4SHong Zhang 
2606d0f46423SBarry Smith   bs  = A->rmap->bs;
2607f4c0e9e4SHong Zhang   mbs = a->mbs;
2608f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2609f4c0e9e4SHong Zhang   ba  = b->a;
2610f4c0e9e4SHong Zhang   bi  = b->i;
2611f4c0e9e4SHong Zhang   bj  = b->j;
2612f4c0e9e4SHong Zhang 
2613f4c0e9e4SHong Zhang   /* find ownerships */
2614d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2615f4c0e9e4SHong Zhang 
2616f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
2617580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
2618f4c0e9e4SHong Zhang 
2619f4c0e9e4SHong Zhang   /* row_max for B */
2620b8475685SHong Zhang   if (rank != size-1) {
2621f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2622f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2623f4c0e9e4SHong Zhang       brow  = bs*i;
2624f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
2625f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2626f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
2627ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
262804d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2629f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
2630f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2631ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
2632ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2633f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2634f4c0e9e4SHong Zhang           }
2635f4c0e9e4SHong Zhang         }
2636f4c0e9e4SHong Zhang         bj++;
2637f4c0e9e4SHong Zhang       }
2638f4c0e9e4SHong Zhang     }
2639f4c0e9e4SHong Zhang 
2640f4c0e9e4SHong Zhang     /* send values to its owners */
2641f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
2642f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2643ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
2644ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2645ca54ac64SHong Zhang     }
2646f4c0e9e4SHong Zhang   }
2647f4c0e9e4SHong Zhang 
2648f4c0e9e4SHong Zhang   /* receive values */
2649ca54ac64SHong Zhang   if (rank) {
2650f4c0e9e4SHong Zhang     rvalues = work;
2651ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2652f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
2653ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
2654f4c0e9e4SHong Zhang       /* process values */
2655f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
2656ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2657f4c0e9e4SHong Zhang       }
2658f4c0e9e4SHong Zhang     }
2659ca54ac64SHong Zhang   }
2660f4c0e9e4SHong Zhang 
26611ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2662ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
266324d5174aSHong Zhang   PetscFunctionReturn(0);
266424d5174aSHong Zhang }
26652798e883SHong Zhang 
266641f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
26672798e883SHong Zhang {
26682798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
2669dfbe8321SBarry Smith   PetscErrorCode    ierr;
2670d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
26713649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
2672ffe4fb16SHong Zhang   Vec               bb1;
26733649974fSBarry Smith   const PetscScalar *b;
2674ffe4fb16SHong Zhang 
2675ffe4fb16SHong Zhang   PetscFunctionBegin;
2676e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2677e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2678ffe4fb16SHong Zhang 
2679a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
268041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2681a2b30743SBarry Smith     PetscFunctionReturn(0);
2682a2b30743SBarry Smith   }
2683a2b30743SBarry Smith 
2684ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2685ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
268641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2687ffe4fb16SHong Zhang       its--;
2688ffe4fb16SHong Zhang     }
2689ffe4fb16SHong Zhang 
2690ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2691ffe4fb16SHong Zhang     while (its--) {
2692ffe4fb16SHong Zhang 
2693ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2694ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2695ffe4fb16SHong Zhang 
2696ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26971ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
26981ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2699580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
27001ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2701ffe4fb16SHong Zhang 
2702efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2703ffe4fb16SHong Zhang 
2704ffe4fb16SHong Zhang       /* copy bb into slvec1a */
27051ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
27063649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2707580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
27081ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2709ffe4fb16SHong Zhang 
2710ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2711fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2712ffe4fb16SHong Zhang 
2713ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
27141ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2715a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2716ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2717ffe4fb16SHong Zhang 
2718ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2719ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2720ffe4fb16SHong Zhang 
2721ffe4fb16SHong Zhang       /* local diagonal sweep */
272241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2723ffe4fb16SHong Zhang     }
27246bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2725fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
272641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2727fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
272841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2729fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2730fa22f6d0SBarry Smith     Vec               xx1;
2731ace3abfcSBarry Smith     PetscBool         hasop;
273220f1ed55SBarry Smith     const PetscScalar *diag;
2733887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
273420f1ed55SBarry Smith     PetscInt          i,n;
2735fa22f6d0SBarry Smith 
2736fa22f6d0SBarry Smith     if (!mat->xx1) {
2737fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2738fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2739fa22f6d0SBarry Smith     }
2740fa22f6d0SBarry Smith     xx1 = mat->xx1;
2741fa22f6d0SBarry Smith     bb1 = mat->bb1;
2742fa22f6d0SBarry Smith 
274341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2744fa22f6d0SBarry Smith 
2745fa22f6d0SBarry Smith     if (!mat->diag) {
2746effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27472a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
2748fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2749fa22f6d0SBarry Smith     }
2750fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2751fa22f6d0SBarry Smith 
2752fa22f6d0SBarry Smith     if (hasop) {
2753fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2754887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
275520f1ed55SBarry Smith     } else {
275620f1ed55SBarry Smith       /*
275720f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
275820f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2759887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
276020f1ed55SBarry Smith       */
276120f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27623649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27633649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
276420f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
276520f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2766887ee2caSBarry Smith       if (omega == 1.0) {
276726fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
276820f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2769887ee2caSBarry Smith       } else {
277026fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
2771887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2772887ee2caSBarry Smith       }
277320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
27743649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
27753649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
277620f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
277720f1ed55SBarry Smith     }
2778fa22f6d0SBarry Smith 
2779fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2780fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2781fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2782fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2783fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2784580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
2785fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2786fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2787fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2788fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2789effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2790fa22f6d0SBarry Smith 
2791fa22f6d0SBarry Smith     /* local sweep */
279241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2793fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2794f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2795ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2796ffe4fb16SHong Zhang }
2797ffe4fb16SHong Zhang 
2798dfb205c3SBarry Smith /*@
2799dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
2800dfb205c3SBarry Smith          CSR format the local rows.
2801dfb205c3SBarry Smith 
2802d083f849SBarry Smith    Collective
2803dfb205c3SBarry Smith 
2804dfb205c3SBarry Smith    Input Parameters:
2805dfb205c3SBarry Smith +  comm - MPI communicator
2806dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
2807dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
2808dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
2809dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2810dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2811dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2812dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2813483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2814dfb205c3SBarry Smith .   j - column indices
2815dfb205c3SBarry Smith -   a - matrix values
2816dfb205c3SBarry Smith 
2817dfb205c3SBarry Smith    Output Parameter:
2818dfb205c3SBarry Smith .   mat - the matrix
2819dfb205c3SBarry Smith 
2820dfb205c3SBarry Smith    Level: intermediate
2821dfb205c3SBarry Smith 
2822dfb205c3SBarry Smith    Notes:
2823dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
2824dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
2825dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
2826dfb205c3SBarry Smith 
2827dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
2828dfb205c3SBarry Smith 
2829dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
283069b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
2831dfb205c3SBarry Smith @*/
28327087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
2833dfb205c3SBarry Smith {
2834dfb205c3SBarry Smith   PetscErrorCode ierr;
2835dfb205c3SBarry Smith 
2836dfb205c3SBarry Smith 
2837dfb205c3SBarry Smith   PetscFunctionBegin;
2838f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2839dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
2840dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
2841dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
2842dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
2843dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
2844dfb205c3SBarry Smith   PetscFunctionReturn(0);
2845dfb205c3SBarry Smith }
2846dfb205c3SBarry Smith 
2847dfb205c3SBarry Smith 
2848dfb205c3SBarry Smith /*@C
2849664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
2850dfb205c3SBarry Smith 
2851d083f849SBarry Smith    Collective
2852dfb205c3SBarry Smith 
2853dfb205c3SBarry Smith    Input Parameters:
28541c4f3114SJed Brown +  B - the matrix
2855dfb205c3SBarry Smith .  bs - the block size
2856dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2857dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2858dfb205c3SBarry Smith -  v - optional values in the matrix
2859dfb205c3SBarry Smith 
2860664954b6SBarry Smith    Level: advanced
2861664954b6SBarry Smith 
2862664954b6SBarry Smith    Notes:
28630cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28640cd7f59aSBarry Smith    and usually the numerical values as well
28650cd7f59aSBarry Smith 
286650c5228eSBarry Smith    Any entries below the diagonal are ignored
2867dfb205c3SBarry Smith 
286869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
2869dfb205c3SBarry Smith @*/
28707087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2871dfb205c3SBarry Smith {
28724ac538c5SBarry Smith   PetscErrorCode ierr;
2873dfb205c3SBarry Smith 
2874dfb205c3SBarry Smith   PetscFunctionBegin;
28754ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2876dfb205c3SBarry Smith   PetscFunctionReturn(0);
2877dfb205c3SBarry Smith }
2878dfb205c3SBarry Smith 
287910c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
28804dcd73b1SHong Zhang {
28814dcd73b1SHong Zhang   PetscErrorCode ierr;
288210c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
288310c56fdeSHong Zhang   PetscInt       *indx;
288410c56fdeSHong Zhang   PetscScalar    *values;
2885dfb205c3SBarry Smith 
28864dcd73b1SHong Zhang   PetscFunctionBegin;
28874dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
288810c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
288910c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
2890de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
289110c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
2892de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
28934dcd73b1SHong Zhang 
289410c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
289510c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
289610c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
2897da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
289810c56fdeSHong Zhang     }
2899da91a574SPierre Jolivet     nbs = n/cbs;
29004dcd73b1SHong Zhang 
29014dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
2902de25e9cbSPierre Jolivet     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
2903de25e9cbSPierre Jolivet 
2904de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2905de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
2906de25e9cbSPierre Jolivet     if (rank == size-1) {
2907de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
2908de25e9cbSPierre Jolivet       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
2909de25e9cbSPierre Jolivet     }
2910de25e9cbSPierre Jolivet 
2911de25e9cbSPierre Jolivet     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
2912e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
291310c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
29144dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
29154dcd73b1SHong Zhang       nnz  = nnz/bs;
29164dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
29174dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
29184dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
29194dcd73b1SHong Zhang     }
2920e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
29214dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
29224dcd73b1SHong Zhang 
29234dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
2924de25e9cbSPierre Jolivet     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
29254dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
2926ce94fc41SPierre Jolivet     ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr);
2927ce94fc41SPierre Jolivet     ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
29284dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
29294dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
29304dcd73b1SHong Zhang   }
29314dcd73b1SHong Zhang 
293210c56fdeSHong Zhang   /* numeric phase */
29334dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
293410c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
29354dcd73b1SHong Zhang 
2936e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
29374dcd73b1SHong Zhang   for (i=0; i<m; i++) {
29384dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29394dcd73b1SHong Zhang     Ii   = i + rstart;
294010c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
29414dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
29424dcd73b1SHong Zhang   }
2943e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
294410c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
294510c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29464dcd73b1SHong Zhang   PetscFunctionReturn(0);
29474dcd73b1SHong Zhang }
2948