173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 11f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 12f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode); 13f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 1487828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1587828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 16a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1787828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 1887828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 19d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 20c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 21a30f8f8cSSatish Balay 22a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2387828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 24a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 25a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 26a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 27a30f8f8cSSatish Balay into the single precision data structures. 28a30f8f8cSSatish Balay */ 29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 30f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 31f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 32f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 33f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 34f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 35a30f8f8cSSatish Balay #else 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 41a30f8f8cSSatish Balay #endif 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay EXTERN_C_BEGIN 444a2ae208SSatish Balay #undef __FUNCT__ 454a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 47a30f8f8cSSatish Balay { 48f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 49a30f8f8cSSatish Balay int ierr; 50a30f8f8cSSatish Balay 51a30f8f8cSSatish Balay PetscFunctionBegin; 52a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 54a30f8f8cSSatish Balay PetscFunctionReturn(0); 55a30f8f8cSSatish Balay } 56a30f8f8cSSatish Balay EXTERN_C_END 57a30f8f8cSSatish Balay 58a30f8f8cSSatish Balay EXTERN_C_BEGIN 594a2ae208SSatish Balay #undef __FUNCT__ 604a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 62a30f8f8cSSatish Balay { 63f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 64a30f8f8cSSatish Balay int ierr; 65a30f8f8cSSatish Balay 66a30f8f8cSSatish Balay PetscFunctionBegin; 67a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 69a30f8f8cSSatish Balay PetscFunctionReturn(0); 70a30f8f8cSSatish Balay } 71a30f8f8cSSatish Balay EXTERN_C_END 72a30f8f8cSSatish Balay 73a30f8f8cSSatish Balay /* 74a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 75a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 76a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 77a30f8f8cSSatish Balay length of colmap equals the global matrix length. 78a30f8f8cSSatish Balay */ 794a2ae208SSatish Balay #undef __FUNCT__ 804a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private" 81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 82a30f8f8cSSatish Balay { 83a30f8f8cSSatish Balay PetscFunctionBegin; 8429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 86a30f8f8cSSatish Balay } 87a30f8f8cSSatish Balay 88a30f8f8cSSatish Balay #define CHUNKSIZE 10 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 91a30f8f8cSSatish Balay { \ 92a30f8f8cSSatish Balay \ 93a30f8f8cSSatish Balay brow = row/bs; \ 94a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 96a30f8f8cSSatish Balay bcol = col/bs; \ 97a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 98a30f8f8cSSatish Balay low = 0; high = nrow; \ 99a30f8f8cSSatish Balay while (high-low > 3) { \ 100a30f8f8cSSatish Balay t = (low+high)/2; \ 101a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 102a30f8f8cSSatish Balay else low = t; \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 105a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 106a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 107a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 108a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 109a30f8f8cSSatish Balay else *bap = value; \ 110a30f8f8cSSatish Balay goto a_noinsert; \ 111a30f8f8cSSatish Balay } \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 114*a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 115a30f8f8cSSatish Balay if (nrow >= rmax) { \ 116a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 117a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 118a30f8f8cSSatish Balay MatScalar *new_a; \ 119a30f8f8cSSatish Balay \ 120*a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 121a30f8f8cSSatish Balay \ 122a30f8f8cSSatish Balay /* malloc new storage space */ \ 123a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12482502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 126a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 127a30f8f8cSSatish Balay \ 128a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 129a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 130a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 131a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 132a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13587828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 137a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay /* free up old matrix storage */ \ 139a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 143a30f8f8cSSatish Balay } \ 144a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 145a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 146a30f8f8cSSatish Balay \ 147a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 148a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 149b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 150a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 151a30f8f8cSSatish Balay a->reallocs++; \ 152a30f8f8cSSatish Balay a->s_nz++; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay N = nrow++ - 1; \ 155a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 156a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 157a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 158a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 159a30f8f8cSSatish Balay } \ 160a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 161a30f8f8cSSatish Balay rp[_i] = bcol; \ 162a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 163a30f8f8cSSatish Balay a_noinsert:; \ 164a30f8f8cSSatish Balay ailen[brow] = nrow; \ 165a30f8f8cSSatish Balay } 166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 167a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 168a30f8f8cSSatish Balay { \ 169a30f8f8cSSatish Balay brow = row/bs; \ 170a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 171a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 172a30f8f8cSSatish Balay bcol = col/bs; \ 173a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 174a30f8f8cSSatish Balay low = 0; high = nrow; \ 175a30f8f8cSSatish Balay while (high-low > 3) { \ 176a30f8f8cSSatish Balay t = (low+high)/2; \ 177a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 178a30f8f8cSSatish Balay else low = t; \ 179a30f8f8cSSatish Balay } \ 180a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 181a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 182a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 183a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 184a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 185a30f8f8cSSatish Balay else *bap = value; \ 186a30f8f8cSSatish Balay goto b_noinsert; \ 187a30f8f8cSSatish Balay } \ 188a30f8f8cSSatish Balay } \ 189a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 190*a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 191a30f8f8cSSatish Balay if (nrow >= rmax) { \ 192a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 193a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 194a30f8f8cSSatish Balay MatScalar *new_a; \ 195a30f8f8cSSatish Balay \ 196*a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 197a30f8f8cSSatish Balay \ 198a30f8f8cSSatish Balay /* malloc new storage space */ \ 199a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20082502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 202a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 203a30f8f8cSSatish Balay \ 204a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 205a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 206a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 207a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 208a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 213a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay /* free up old matrix storage */ \ 215a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay } \ 220a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 221a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 222a30f8f8cSSatish Balay \ 223a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 224a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 225b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 226a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 227a30f8f8cSSatish Balay b->reallocs++; \ 228a30f8f8cSSatish Balay b->nz++; \ 229a30f8f8cSSatish Balay } \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 232a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 233a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 234a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 235a30f8f8cSSatish Balay } \ 236a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 237a30f8f8cSSatish Balay rp[_i] = bcol; \ 238a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 239a30f8f8cSSatish Balay b_noinsert:; \ 240a30f8f8cSSatish Balay bilen[brow] = nrow; \ 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay #endif 243a30f8f8cSSatish Balay 244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2454a2ae208SSatish Balay #undef __FUNCT__ 2464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 247f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 248a30f8f8cSSatish Balay { 249a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 250a30f8f8cSSatish Balay int ierr,i,N = m*n; 251a30f8f8cSSatish Balay MatScalar *vsingle; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (N > b->setvalueslen) { 255a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25682502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 257a30f8f8cSSatish Balay b->setvalueslen = N; 258a30f8f8cSSatish Balay } 259a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 260a30f8f8cSSatish Balay 261a30f8f8cSSatish Balay for (i=0; i<N; i++) { 262a30f8f8cSSatish Balay vsingle[i] = v[i]; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 265a30f8f8cSSatish Balay PetscFunctionReturn(0); 266a30f8f8cSSatish Balay } 267a30f8f8cSSatish Balay 2684a2ae208SSatish Balay #undef __FUNCT__ 2694a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 270f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 271a30f8f8cSSatish Balay { 272a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 273a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 274a30f8f8cSSatish Balay MatScalar *vsingle; 275a30f8f8cSSatish Balay 276a30f8f8cSSatish Balay PetscFunctionBegin; 277a30f8f8cSSatish Balay if (N > b->setvalueslen) { 278a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 27982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 280a30f8f8cSSatish Balay b->setvalueslen = N; 281a30f8f8cSSatish Balay } 282a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 283a30f8f8cSSatish Balay for (i=0; i<N; i++) { 284a30f8f8cSSatish Balay vsingle[i] = v[i]; 285a30f8f8cSSatish Balay } 286a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 287a30f8f8cSSatish Balay PetscFunctionReturn(0); 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 2904a2ae208SSatish Balay #undef __FUNCT__ 2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 292f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay 3034a2ae208SSatish Balay #undef __FUNCT__ 3044a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 305f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 306a30f8f8cSSatish Balay { 307a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 308a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 309a30f8f8cSSatish Balay MatScalar *vsingle; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay PetscFunctionBegin; 31229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3134d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay #endif 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 318a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 319a30f8f8cSSatish Balay */ 3204a2ae208SSatish Balay #undef __FUNCT__ 321e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 322f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 323a30f8f8cSSatish Balay { 324a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 325a30f8f8cSSatish Balay MatScalar value; 326b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 327a30f8f8cSSatish Balay int ierr,i,j,row,col; 328b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 329a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 330a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 331a30f8f8cSSatish Balay 332a30f8f8cSSatish Balay /* Some Variables required in the macro */ 333a30f8f8cSSatish Balay Mat A = baij->A; 334a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 335a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 336a30f8f8cSSatish Balay MatScalar *aa=a->a; 337a30f8f8cSSatish Balay 338a30f8f8cSSatish Balay Mat B = baij->B; 339a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 340a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 341a30f8f8cSSatish Balay MatScalar *ba=b->a; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 344a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 345a30f8f8cSSatish Balay MatScalar *ap,*bap; 346a30f8f8cSSatish Balay 347a30f8f8cSSatish Balay /* for stash */ 348f65c83cfSHong Zhang int n_loc, *in_loc=0; 349f65c83cfSHong Zhang MatScalar *v_loc=0; 350a30f8f8cSSatish Balay 351a30f8f8cSSatish Balay PetscFunctionBegin; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay if(!baij->donotstash){ 35482502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35582502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 356a30f8f8cSSatish Balay } 357a30f8f8cSSatish Balay 358a30f8f8cSSatish Balay for (i=0; i<m; i++) { 359a30f8f8cSSatish Balay if (im[i] < 0) continue; 360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 361590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 362a30f8f8cSSatish Balay #endif 363a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 364a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 365a30f8f8cSSatish Balay for (j=0; j<n; j++) { 366f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 367a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 368a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 369a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 370a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 371a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 372a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 373a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 374a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 376590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 377a30f8f8cSSatish Balay #endif 378a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 379a30f8f8cSSatish Balay if (mat->was_assembled) { 380a30f8f8cSSatish Balay if (!baij->colmap) { 381a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 384a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 38571730473SSatish Balay col = col - 1; 386a30f8f8cSSatish Balay #else 38771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 388a30f8f8cSSatish Balay #endif 389a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 390a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 391a30f8f8cSSatish Balay col = in[j]; 392a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 393a30f8f8cSSatish Balay B = baij->B; 394a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 395a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 396a30f8f8cSSatish Balay ba=b->a; 39771730473SSatish Balay } else col += in[j]%bs; 398a30f8f8cSSatish Balay } else col = in[j]; 399a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 400a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 401a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay } else { /* off processor entry */ 405a30f8f8cSSatish Balay if (!baij->donotstash) { 406a30f8f8cSSatish Balay n_loc = 0; 407a30f8f8cSSatish Balay for (j=0; j<n; j++){ 408f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 409a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 410a30f8f8cSSatish Balay if (roworiented) { 411a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 412a30f8f8cSSatish Balay } else { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay n_loc++; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay 422a30f8f8cSSatish Balay if(!baij->donotstash){ 423a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 424a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay PetscFunctionReturn(0); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay 4294a2ae208SSatish Balay #undef __FUNCT__ 430e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 431f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 432a30f8f8cSSatish Balay { 4330880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 434f15d580aSBarry Smith const MatScalar *value; 435f15d580aSBarry Smith MatScalar *barray=baij->barray; 4360880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4370880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4380880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4390880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4400880e062SHong Zhang 441a30f8f8cSSatish Balay PetscFunctionBegin; 4420880e062SHong Zhang if(!barray) { 4430880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4440880e062SHong Zhang baij->barray = barray; 4450880e062SHong Zhang } 4460880e062SHong Zhang 4470880e062SHong Zhang if (roworiented) { 4480880e062SHong Zhang stepval = (n-1)*bs; 4490880e062SHong Zhang } else { 4500880e062SHong Zhang stepval = (m-1)*bs; 4510880e062SHong Zhang } 4520880e062SHong Zhang for (i=0; i<m; i++) { 4530880e062SHong Zhang if (im[i] < 0) continue; 4540880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 455590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4560880e062SHong Zhang #endif 4570880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4580880e062SHong Zhang row = im[i] - rstart; 4590880e062SHong Zhang for (j=0; j<n; j++) { 4600880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4610880e062SHong Zhang if ((roworiented) && (n == 1)) { 462f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4630880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 464f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4650880e062SHong Zhang } else { /* Here a copy is required */ 4660880e062SHong Zhang if (roworiented) { 4670880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4680880e062SHong Zhang } else { 4690880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4700880e062SHong Zhang } 4710880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4720880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4730880e062SHong Zhang *barray++ = *value++; 4740880e062SHong Zhang } 4750880e062SHong Zhang } 4760880e062SHong Zhang barray -=bs2; 4770880e062SHong Zhang } 4780880e062SHong Zhang 4790880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4800880e062SHong Zhang col = in[j] - cstart; 4810880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4820880e062SHong Zhang } 4830880e062SHong Zhang else if (in[j] < 0) continue; 4840880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 485590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4860880e062SHong Zhang #endif 4870880e062SHong Zhang else { 4880880e062SHong Zhang if (mat->was_assembled) { 4890880e062SHong Zhang if (!baij->colmap) { 4900880e062SHong Zhang ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 4910880e062SHong Zhang } 4920880e062SHong Zhang 4930880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4940880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4950880e062SHong Zhang { int data; 4960880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4970880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4980880e062SHong Zhang } 4990880e062SHong Zhang #else 5000880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 5010880e062SHong Zhang #endif 5020880e062SHong Zhang #endif 5030880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 5040880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 5050880e062SHong Zhang col = (col - 1)/bs; 5060880e062SHong Zhang #else 5070880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 5080880e062SHong Zhang #endif 5090880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 5100880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 5110880e062SHong Zhang col = in[j]; 5120880e062SHong Zhang } 5130880e062SHong Zhang } 5140880e062SHong Zhang else col = in[j]; 5150880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5160880e062SHong Zhang } 5170880e062SHong Zhang } 5180880e062SHong Zhang } else { 5190880e062SHong Zhang if (!baij->donotstash) { 5200880e062SHong Zhang if (roworiented) { 5210880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5220880e062SHong Zhang } else { 5230880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5240880e062SHong Zhang } 5250880e062SHong Zhang } 5260880e062SHong Zhang } 5270880e062SHong Zhang } 5280880e062SHong Zhang PetscFunctionReturn(0); 529a30f8f8cSSatish Balay } 530a30f8f8cSSatish Balay 531a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 532a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 533a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 534a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5354a2ae208SSatish Balay #undef __FUNCT__ 5364a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 537f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 538a30f8f8cSSatish Balay { 539a30f8f8cSSatish Balay PetscFunctionBegin; 54029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 54196e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 542a30f8f8cSSatish Balay } 543a30f8f8cSSatish Balay 5444a2ae208SSatish Balay #undef __FUNCT__ 5454a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 546f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 547a30f8f8cSSatish Balay { 548a30f8f8cSSatish Balay PetscFunctionBegin; 54929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55096e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 551a30f8f8cSSatish Balay } 552a30f8f8cSSatish Balay 5534a2ae208SSatish Balay #undef __FUNCT__ 5544a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 555f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 556a30f8f8cSSatish Balay { 557f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 558a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 559a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 560a30f8f8cSSatish Balay 561a30f8f8cSSatish Balay PetscFunctionBegin; 562a30f8f8cSSatish Balay for (i=0; i<m; i++) { 563590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 564590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 565a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 566a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 567a30f8f8cSSatish Balay for (j=0; j<n; j++) { 568590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 569590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 570a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 571a30f8f8cSSatish Balay col = idxn[j] - bscstart; 572c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 573a30f8f8cSSatish Balay } else { 574a30f8f8cSSatish Balay if (!baij->colmap) { 575a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 576a30f8f8cSSatish Balay } 577a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 578a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 579a30f8f8cSSatish Balay data --; 580a30f8f8cSSatish Balay #else 581a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 582a30f8f8cSSatish Balay #endif 583a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 584a30f8f8cSSatish Balay else { 585a30f8f8cSSatish Balay col = data + idxn[j]%bs; 586c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 587a30f8f8cSSatish Balay } 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay } else { 59129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 592a30f8f8cSSatish Balay } 593a30f8f8cSSatish Balay } 594a30f8f8cSSatish Balay PetscFunctionReturn(0); 595a30f8f8cSSatish Balay } 596a30f8f8cSSatish Balay 5974a2ae208SSatish Balay #undef __FUNCT__ 5984a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 599a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 600a30f8f8cSSatish Balay { 601a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 602bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 603bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 604a30f8f8cSSatish Balay int ierr; 605a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 606a30f8f8cSSatish Balay 607a30f8f8cSSatish Balay PetscFunctionBegin; 608a30f8f8cSSatish Balay if (baij->size == 1) { 609a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 610a30f8f8cSSatish Balay } else { 611a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 612f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 613a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 614a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 615a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 616a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 617a30f8f8cSSatish Balay /* 61856faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 61956faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 620a30f8f8cSSatish Balay */ 621d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 622a30f8f8cSSatish Balay /* 62356faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 62456faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 625a30f8f8cSSatish Balay 626a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 627a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 628a30f8f8cSSatish Balay } else { 62929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 630a30f8f8cSSatish Balay } 631a30f8f8cSSatish Balay } 632a30f8f8cSSatish Balay PetscFunctionReturn(0); 633a30f8f8cSSatish Balay } 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay /* 636a30f8f8cSSatish Balay Creates the hash table, and sets the table 637a30f8f8cSSatish Balay This table is created only once. 638a30f8f8cSSatish Balay If new entried need to be added to the matrix 639a30f8f8cSSatish Balay then the hash table has to be destroyed and 640a30f8f8cSSatish Balay recreated. 641a30f8f8cSSatish Balay */ 6424a2ae208SSatish Balay #undef __FUNCT__ 6434a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 644a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 645a30f8f8cSSatish Balay { 646a30f8f8cSSatish Balay PetscFunctionBegin; 64729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 64896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 649a30f8f8cSSatish Balay } 650a30f8f8cSSatish Balay 6514a2ae208SSatish Balay #undef __FUNCT__ 6524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 653a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 654a30f8f8cSSatish Balay { 655a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 656a30f8f8cSSatish Balay int ierr,nstash,reallocs; 657a30f8f8cSSatish Balay InsertMode addv; 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay PetscFunctionBegin; 660a30f8f8cSSatish Balay if (baij->donotstash) { 661a30f8f8cSSatish Balay PetscFunctionReturn(0); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 664a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 665a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 666a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 66729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 668a30f8f8cSSatish Balay } 669a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 670a30f8f8cSSatish Balay 671a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 672a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 673a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 674b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 675a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 676b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 677a30f8f8cSSatish Balay PetscFunctionReturn(0); 678a30f8f8cSSatish Balay } 679a30f8f8cSSatish Balay 6804a2ae208SSatish Balay #undef __FUNCT__ 6814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 682a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 683a30f8f8cSSatish Balay { 684a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 685a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 686a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 687a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 688a30f8f8cSSatish Balay int *row,*col,other_disassembled; 689a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 690a30f8f8cSSatish Balay MatScalar *val; 691a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 692a30f8f8cSSatish Balay 693a30f8f8cSSatish Balay PetscFunctionBegin; 694a30f8f8cSSatish Balay 695a30f8f8cSSatish Balay if (!baij->donotstash) { 696a30f8f8cSSatish Balay while (1) { 697a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 698a30f8f8cSSatish Balay /* 69956faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 70056faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 701a30f8f8cSSatish Balay */ 702a30f8f8cSSatish Balay if (!flg) break; 703a30f8f8cSSatish Balay 704a30f8f8cSSatish Balay for (i=0; i<n;) { 705a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 706a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 707a30f8f8cSSatish Balay if (j < n) ncols = j-i; 708a30f8f8cSSatish Balay else ncols = n-i; 709a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 710a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 711a30f8f8cSSatish Balay i = j; 712a30f8f8cSSatish Balay } 713a30f8f8cSSatish Balay } 714a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 715a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 716a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 717a30f8f8cSSatish Balay restore the original flags */ 718a30f8f8cSSatish Balay r1 = baij->roworiented; 719a30f8f8cSSatish Balay r2 = a->roworiented; 720a30f8f8cSSatish Balay r3 = b->roworiented; 721a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 722a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 723a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 724a30f8f8cSSatish Balay while (1) { 725a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 726a30f8f8cSSatish Balay if (!flg) break; 727a30f8f8cSSatish Balay 728a30f8f8cSSatish Balay for (i=0; i<n;) { 729a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 730a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 731a30f8f8cSSatish Balay if (j < n) ncols = j-i; 732a30f8f8cSSatish Balay else ncols = n-i; 733a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 734a30f8f8cSSatish Balay i = j; 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay } 737a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 738a30f8f8cSSatish Balay baij->roworiented = r1; 739a30f8f8cSSatish Balay a->roworiented = r2; 740a30f8f8cSSatish Balay b->roworiented = r3; 741a30f8f8cSSatish Balay } 742a30f8f8cSSatish Balay 743a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 744a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 745a30f8f8cSSatish Balay 746a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 747a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 748a30f8f8cSSatish Balay /* 749a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 750a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 751a30f8f8cSSatish Balay */ 752a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 753a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 754a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 755c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 756a30f8f8cSSatish Balay } 757a30f8f8cSSatish Balay } 758a30f8f8cSSatish Balay 759a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 76040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 761a30f8f8cSSatish Balay } 762a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 763a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 764a30f8f8cSSatish Balay 765a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 766a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 767f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 768a30f8f8cSSatish Balay baij->ht_total_ct = 0; 769a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay #endif 772a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 773c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 774a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 775a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 776a30f8f8cSSatish Balay } 777a30f8f8cSSatish Balay 778a30f8f8cSSatish Balay if (baij->rowvalues) { 779a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 780a30f8f8cSSatish Balay baij->rowvalues = 0; 781a30f8f8cSSatish Balay } 7825222a1afSHong Zhang 783a30f8f8cSSatish Balay PetscFunctionReturn(0); 784a30f8f8cSSatish Balay } 785a30f8f8cSSatish Balay 7864a2ae208SSatish Balay #undef __FUNCT__ 7874a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 788b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 789a30f8f8cSSatish Balay { 790a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 791fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 792a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 793b0a32e0cSBarry Smith PetscViewer sviewer; 794f3ef73ceSBarry Smith PetscViewerFormat format; 795a30f8f8cSSatish Balay 796a30f8f8cSSatish Balay PetscFunctionBegin; 797b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 798fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 799a30f8f8cSSatish Balay if (isascii) { 800b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 801456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 802a30f8f8cSSatish Balay MatInfo info; 803a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 804a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 805b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 806b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 807a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 808a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 809b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 810a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 811b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 812b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 813a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 814a30f8f8cSSatish Balay PetscFunctionReturn(0); 815fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 816b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 817a30f8f8cSSatish Balay PetscFunctionReturn(0); 818a30f8f8cSSatish Balay } 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay 821a30f8f8cSSatish Balay if (isdraw) { 822b0a32e0cSBarry Smith PetscDraw draw; 823a30f8f8cSSatish Balay PetscTruth isnull; 824b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 825b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay if (size == 1) { 829e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 830a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 831a30f8f8cSSatish Balay } else { 832a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 833a30f8f8cSSatish Balay Mat A; 83465d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 83565d70643SHong Zhang Mat_SeqBAIJ *Bloc; 836b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 837a30f8f8cSSatish Balay MatScalar *a; 838a30f8f8cSSatish Balay 839a30f8f8cSSatish Balay if (!rank) { 840bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 841a30f8f8cSSatish Balay } else { 842f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 843a30f8f8cSSatish Balay } 844b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 845a30f8f8cSSatish Balay 846a30f8f8cSSatish Balay /* copy over the A part */ 84765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 848a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 84982502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 850a30f8f8cSSatish Balay 851a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 852a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 853a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 854a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 855a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 856a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 857a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 858a30f8f8cSSatish Balay col++; a += bs; 859a30f8f8cSSatish Balay } 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay } 862a30f8f8cSSatish Balay /* copy over the B part */ 86365d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 86465d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 865a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 866a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 867a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 868a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 869a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 870a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 871a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 872a30f8f8cSSatish Balay col++; a += bs; 873a30f8f8cSSatish Balay } 874a30f8f8cSSatish Balay } 875a30f8f8cSSatish Balay } 876a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 877a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 878a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 879a30f8f8cSSatish Balay /* 880a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 881b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 882a30f8f8cSSatish Balay */ 883b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 88465d70643SHong Zhang if (!rank) { 885e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 886a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 887a30f8f8cSSatish Balay } 888b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 889a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 890a30f8f8cSSatish Balay } 891a30f8f8cSSatish Balay PetscFunctionReturn(0); 892a30f8f8cSSatish Balay } 893a30f8f8cSSatish Balay 8944a2ae208SSatish Balay #undef __FUNCT__ 8954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 896b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 897a30f8f8cSSatish Balay { 898a30f8f8cSSatish Balay int ierr; 899a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 900a30f8f8cSSatish Balay 901a30f8f8cSSatish Balay PetscFunctionBegin; 902b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 903fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 904b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 905fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 906a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 907a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 908a30f8f8cSSatish Balay } else { 90929bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 910a30f8f8cSSatish Balay } 911a30f8f8cSSatish Balay PetscFunctionReturn(0); 912a30f8f8cSSatish Balay } 913a30f8f8cSSatish Balay 9144a2ae208SSatish Balay #undef __FUNCT__ 9154a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 916a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 917a30f8f8cSSatish Balay { 918a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 919a30f8f8cSSatish Balay int ierr; 920a30f8f8cSSatish Balay 921a30f8f8cSSatish Balay PetscFunctionBegin; 922a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 923b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 924a30f8f8cSSatish Balay #endif 925a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 926a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 927a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 928a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 929a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 930a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 931a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 932a30f8f8cSSatish Balay #else 933a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 934a30f8f8cSSatish Balay #endif 935a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 936a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 937a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 93840781036SHong Zhang if (baij->slvec0) { 93940781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 94040781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 94140781036SHong Zhang } 94240781036SHong Zhang if (baij->slvec1) { 94340781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 94440781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 94540781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 94640781036SHong Zhang } 94740781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 948a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 949a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 950a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 951a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 952a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 953a30f8f8cSSatish Balay #endif 954a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 955a30f8f8cSSatish Balay PetscFunctionReturn(0); 956a30f8f8cSSatish Balay } 957a30f8f8cSSatish Balay 9584a2ae208SSatish Balay #undef __FUNCT__ 959a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 960a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 961a9d4b620SHong Zhang { 962a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9634024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 964a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 965a9d4b620SHong Zhang 966a9d4b620SHong Zhang PetscFunctionBegin; 967a9d4b620SHong Zhang /* 96856faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," _1comm is called ...\n"); 96956faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 970a9d4b620SHong Zhang */ 971a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 972a9d4b620SHong Zhang if (nt != A->n) { 973a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 974a9d4b620SHong Zhang } 975a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 976a9d4b620SHong Zhang if (nt != A->m) { 977a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 978a9d4b620SHong Zhang } 979a9d4b620SHong Zhang 980a9d4b620SHong Zhang /* diagonal part */ 981a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 982a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 983a9d4b620SHong Zhang 984a9d4b620SHong Zhang /* subdiagonal part */ 985a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 986a9d4b620SHong Zhang 987a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 988a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 989a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 990a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 991a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 992a9d4b620SHong Zhang 993a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 994a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 995a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 996a9d4b620SHong Zhang 997a9d4b620SHong Zhang /* supperdiagonal part */ 998a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 999a9d4b620SHong Zhang 1000a9d4b620SHong Zhang PetscFunctionReturn(0); 1001a9d4b620SHong Zhang } 1002a9d4b620SHong Zhang 1003a9d4b620SHong Zhang #undef __FUNCT__ 100440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 100540781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1006a30f8f8cSSatish Balay { 1007a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1008a30f8f8cSSatish Balay int ierr,nt; 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay PetscFunctionBegin; 1011a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1012b5df2d14SHong Zhang if (nt != A->n) { 101329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1014a30f8f8cSSatish Balay } 1015a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1016b5df2d14SHong Zhang if (nt != A->m) { 101729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1018a30f8f8cSSatish Balay } 101965d70643SHong Zhang 1020b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1021b941877fSHong Zhang /* do diagonal part */ 1022b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1023b941877fSHong Zhang /* do supperdiagonal part */ 1024b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1025b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1026b941877fSHong Zhang /* do subdiagonal part */ 1027b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1028b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1029b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 103065d70643SHong Zhang 1031a30f8f8cSSatish Balay PetscFunctionReturn(0); 1032a30f8f8cSSatish Balay } 1033a30f8f8cSSatish Balay 10344a2ae208SSatish Balay #undef __FUNCT__ 10354a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1036a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1037a30f8f8cSSatish Balay { 1038de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1039a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1040a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1041a9d4b620SHong Zhang 1042a9d4b620SHong Zhang PetscFunctionBegin; 1043a9d4b620SHong Zhang /* 104456faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 104556faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1046a9d4b620SHong Zhang */ 1047a9d4b620SHong Zhang /* diagonal part */ 1048a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1049a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1050a9d4b620SHong Zhang 1051a9d4b620SHong Zhang /* subdiagonal part */ 1052a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1053a9d4b620SHong Zhang 1054a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 1055a9d4b620SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1056a9d4b620SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1057a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1058a9d4b620SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1059a9d4b620SHong Zhang 1060a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1061a9d4b620SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1062a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1063a9d4b620SHong Zhang 1064a9d4b620SHong Zhang /* supperdiagonal part */ 1065a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1066a9d4b620SHong Zhang 1067a9d4b620SHong Zhang PetscFunctionReturn(0); 1068a9d4b620SHong Zhang } 1069a9d4b620SHong Zhang 1070a9d4b620SHong Zhang #undef __FUNCT__ 1071a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1072a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1073a9d4b620SHong Zhang { 1074a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1075aa482183SHong Zhang int ierr; 1076a30f8f8cSSatish Balay 1077a30f8f8cSSatish Balay PetscFunctionBegin; 1078b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1079b941877fSHong Zhang /* do diagonal part */ 1080b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1081b941877fSHong Zhang /* do supperdiagonal part */ 1082b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1083de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1084de8b6608SHong Zhang 1085b941877fSHong Zhang /* do subdiagonal part */ 1086a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1087a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1088a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1089aa482183SHong Zhang 1090a30f8f8cSSatish Balay PetscFunctionReturn(0); 1091a30f8f8cSSatish Balay } 1092a30f8f8cSSatish Balay 10934a2ae208SSatish Balay #undef __FUNCT__ 10944a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1095a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1096a30f8f8cSSatish Balay { 1097a30f8f8cSSatish Balay PetscFunctionBegin; 109829bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 109996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1100a30f8f8cSSatish Balay } 1101a30f8f8cSSatish Balay 11024a2ae208SSatish Balay #undef __FUNCT__ 11034a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1104a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1105a30f8f8cSSatish Balay { 1106a30f8f8cSSatish Balay PetscFunctionBegin; 110729bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 110896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1109a30f8f8cSSatish Balay } 1110a30f8f8cSSatish Balay 1111a30f8f8cSSatish Balay /* 1112a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1113a30f8f8cSSatish Balay diagonal block 1114a30f8f8cSSatish Balay */ 11154a2ae208SSatish Balay #undef __FUNCT__ 11164a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1117a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1118a30f8f8cSSatish Balay { 1119a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1120a30f8f8cSSatish Balay int ierr; 1121a30f8f8cSSatish Balay 1122a30f8f8cSSatish Balay PetscFunctionBegin; 112329bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1124a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1125a30f8f8cSSatish Balay PetscFunctionReturn(0); 1126a30f8f8cSSatish Balay } 1127a30f8f8cSSatish Balay 11284a2ae208SSatish Balay #undef __FUNCT__ 11294a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1130268466fbSBarry Smith int MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1131a30f8f8cSSatish Balay { 1132a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1133a30f8f8cSSatish Balay int ierr; 1134a30f8f8cSSatish Balay 1135a30f8f8cSSatish Balay PetscFunctionBegin; 1136a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1138a30f8f8cSSatish Balay PetscFunctionReturn(0); 1139a30f8f8cSSatish Balay } 1140a30f8f8cSSatish Balay 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 114387828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1144a30f8f8cSSatish Balay { 1145a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 114687828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1147a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1148a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1149a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1150a30f8f8cSSatish Balay 1151a30f8f8cSSatish Balay PetscFunctionBegin; 115229bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1153a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1154a30f8f8cSSatish Balay 1155a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1156a30f8f8cSSatish Balay /* 1157a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1158a30f8f8cSSatish Balay */ 1159a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1160a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1161a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1162a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1163a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1164a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1165a30f8f8cSSatish Balay } 116687828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1168a30f8f8cSSatish Balay } 1169a30f8f8cSSatish Balay 117029bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1171a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1172a30f8f8cSSatish Balay 1173a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1174a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1175a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1176a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1178a30f8f8cSSatish Balay nztot = nzA + nzB; 1179a30f8f8cSSatish Balay 1180a30f8f8cSSatish Balay cmap = mat->garray; 1181a30f8f8cSSatish Balay if (v || idx) { 1182a30f8f8cSSatish Balay if (nztot) { 1183a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1184a30f8f8cSSatish Balay int imark = -1; 1185a30f8f8cSSatish Balay if (v) { 1186a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1187a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1188a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1189a30f8f8cSSatish Balay else break; 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay imark = i; 1192a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1193a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1194a30f8f8cSSatish Balay } 1195a30f8f8cSSatish Balay if (idx) { 1196a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1197a30f8f8cSSatish Balay if (imark > -1) { 1198a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1199a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1200a30f8f8cSSatish Balay } 1201a30f8f8cSSatish Balay } else { 1202a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1203a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1204a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1205a30f8f8cSSatish Balay else break; 1206a30f8f8cSSatish Balay } 1207a30f8f8cSSatish Balay imark = i; 1208a30f8f8cSSatish Balay } 1209a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1210a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1211a30f8f8cSSatish Balay } 1212a30f8f8cSSatish Balay } else { 1213a30f8f8cSSatish Balay if (idx) *idx = 0; 1214a30f8f8cSSatish Balay if (v) *v = 0; 1215a30f8f8cSSatish Balay } 1216a30f8f8cSSatish Balay } 1217a30f8f8cSSatish Balay *nz = nztot; 1218a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1219a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1220a30f8f8cSSatish Balay PetscFunctionReturn(0); 1221a30f8f8cSSatish Balay } 1222a30f8f8cSSatish Balay 12234a2ae208SSatish Balay #undef __FUNCT__ 12244a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 122587828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1226a30f8f8cSSatish Balay { 1227a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1228a30f8f8cSSatish Balay 1229a30f8f8cSSatish Balay PetscFunctionBegin; 1230a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 123129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1232a30f8f8cSSatish Balay } 1233a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1234a30f8f8cSSatish Balay PetscFunctionReturn(0); 1235a30f8f8cSSatish Balay } 1236a30f8f8cSSatish Balay 12374a2ae208SSatish Balay #undef __FUNCT__ 12384a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1239a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1240a30f8f8cSSatish Balay { 1241a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1242a30f8f8cSSatish Balay 1243a30f8f8cSSatish Balay PetscFunctionBegin; 1244a30f8f8cSSatish Balay *bs = baij->bs; 1245a30f8f8cSSatish Balay PetscFunctionReturn(0); 1246a30f8f8cSSatish Balay } 1247a30f8f8cSSatish Balay 12484a2ae208SSatish Balay #undef __FUNCT__ 12494a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1250a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1251a30f8f8cSSatish Balay { 1252a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1253a30f8f8cSSatish Balay int ierr; 1254a30f8f8cSSatish Balay 1255a30f8f8cSSatish Balay PetscFunctionBegin; 1256a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1257a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1258a30f8f8cSSatish Balay PetscFunctionReturn(0); 1259a30f8f8cSSatish Balay } 1260a30f8f8cSSatish Balay 12614a2ae208SSatish Balay #undef __FUNCT__ 12624a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1263a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1264a30f8f8cSSatish Balay { 1265a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1266a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1267a30f8f8cSSatish Balay int ierr; 1268a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1269a30f8f8cSSatish Balay 1270a30f8f8cSSatish Balay PetscFunctionBegin; 1271f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1272a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1273a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1274a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1275a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1276a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1277a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1278a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1279a30f8f8cSSatish Balay info->nz_used = isend[0]; 1280a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1281a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1282a30f8f8cSSatish Balay info->memory = isend[3]; 1283a30f8f8cSSatish Balay info->mallocs = isend[4]; 1284a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1285d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1286a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1287a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1288a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1289a30f8f8cSSatish Balay info->memory = irecv[3]; 1290a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1291a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1292d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1293a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1294a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1295a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1296a30f8f8cSSatish Balay info->memory = irecv[3]; 1297a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1298a30f8f8cSSatish Balay } else { 129929bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1300a30f8f8cSSatish Balay } 1301f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1302f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1303f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1304f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1305a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1306a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1307a30f8f8cSSatish Balay info->factor_mallocs = 0; 1308a30f8f8cSSatish Balay PetscFunctionReturn(0); 1309a30f8f8cSSatish Balay } 1310a30f8f8cSSatish Balay 13114a2ae208SSatish Balay #undef __FUNCT__ 13124a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1313a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1314a30f8f8cSSatish Balay { 1315a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1316a30f8f8cSSatish Balay int ierr; 1317a30f8f8cSSatish Balay 1318a30f8f8cSSatish Balay PetscFunctionBegin; 1319e98b92d7SKris Buschelman switch (op) { 1320e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1321e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1322e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1323e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1324e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1325e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1326e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1327a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1328a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1329e98b92d7SKris Buschelman break; 1330e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1331a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1332a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1334e98b92d7SKris Buschelman break; 1335e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1336e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1337e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1338b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1339e98b92d7SKris Buschelman break; 1340e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1341a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1342a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1343a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1344e98b92d7SKris Buschelman break; 1345e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1346a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1347e98b92d7SKris Buschelman break; 1348e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 134929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1350e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1351a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1352e98b92d7SKris Buschelman break; 1353e98b92d7SKris Buschelman default: 135429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1355a30f8f8cSSatish Balay } 1356a30f8f8cSSatish Balay PetscFunctionReturn(0); 1357a30f8f8cSSatish Balay } 1358a30f8f8cSSatish Balay 13594a2ae208SSatish Balay #undef __FUNCT__ 13608115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13618115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1362a30f8f8cSSatish Balay { 13638115998fSBarry Smith int ierr; 1364a30f8f8cSSatish Balay PetscFunctionBegin; 1365999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13668115998fSBarry Smith PetscFunctionReturn(0); 1367a30f8f8cSSatish Balay } 1368a30f8f8cSSatish Balay 13694a2ae208SSatish Balay #undef __FUNCT__ 13704a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1371a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1372a30f8f8cSSatish Balay { 1373a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1374a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1375a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1376a30f8f8cSSatish Balay 1377a30f8f8cSSatish Balay PetscFunctionBegin; 1378a30f8f8cSSatish Balay if (ll != rr) { 137929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1380a30f8f8cSSatish Balay } 1381a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1382a30f8f8cSSatish Balay if (rr) { 1383a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138429bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1385a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1386a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1387a30f8f8cSSatish Balay /*} if (ll) { */ 1388a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 138929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1390a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1391a30f8f8cSSatish Balay /* } */ 1392a30f8f8cSSatish Balay /* scale the diagonal block */ 1393a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1394a30f8f8cSSatish Balay 1395a30f8f8cSSatish Balay /* if (rr) { */ 1396a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1397a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1399a30f8f8cSSatish Balay } 1400a30f8f8cSSatish Balay 1401a30f8f8cSSatish Balay PetscFunctionReturn(0); 1402a30f8f8cSSatish Balay } 1403a30f8f8cSSatish Balay 14044a2ae208SSatish Balay #undef __FUNCT__ 14054a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1406268466fbSBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1407a30f8f8cSSatish Balay { 1408a30f8f8cSSatish Balay PetscFunctionBegin; 1409c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1410a30f8f8cSSatish Balay } 1411a30f8f8cSSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1414a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1415a30f8f8cSSatish Balay { 1416a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1417a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1418a30f8f8cSSatish Balay static int called = 0; 1419a30f8f8cSSatish Balay int ierr; 1420a30f8f8cSSatish Balay 1421a30f8f8cSSatish Balay PetscFunctionBegin; 1422a30f8f8cSSatish Balay if (!a->rank) { 1423a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1424a30f8f8cSSatish Balay } 1425a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1426a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1427a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1428a30f8f8cSSatish Balay PetscFunctionReturn(0); 1429a30f8f8cSSatish Balay } 1430a30f8f8cSSatish Balay 14314a2ae208SSatish Balay #undef __FUNCT__ 14324a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1433a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1434a30f8f8cSSatish Balay { 1435f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1436a30f8f8cSSatish Balay int ierr; 1437a30f8f8cSSatish Balay 1438a30f8f8cSSatish Balay PetscFunctionBegin; 1439a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1440a30f8f8cSSatish Balay PetscFunctionReturn(0); 1441a30f8f8cSSatish Balay } 1442a30f8f8cSSatish Balay 1443a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1444a30f8f8cSSatish Balay 14454a2ae208SSatish Balay #undef __FUNCT__ 14464a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1447a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1448a30f8f8cSSatish Balay { 1449a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1450a30f8f8cSSatish Balay Mat a,b,c,d; 1451a30f8f8cSSatish Balay PetscTruth flg; 1452a30f8f8cSSatish Balay int ierr; 1453a30f8f8cSSatish Balay 1454a30f8f8cSSatish Balay PetscFunctionBegin; 1455a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1456a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1457a30f8f8cSSatish Balay 1458a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1459a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1460a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1461a30f8f8cSSatish Balay } 1462a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1463a30f8f8cSSatish Balay PetscFunctionReturn(0); 1464a30f8f8cSSatish Balay } 1465a30f8f8cSSatish Balay 14664a2ae208SSatish Balay #undef __FUNCT__ 14674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1468273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1469273d9f13SBarry Smith { 1470273d9f13SBarry Smith int ierr; 1471273d9f13SBarry Smith 1472273d9f13SBarry Smith PetscFunctionBegin; 1473273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1474273d9f13SBarry Smith PetscFunctionReturn(0); 1475273d9f13SBarry Smith } 1476a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1477a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1478a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1479a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1480a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1481a9d4b620SHong Zhang MatMult_MPISBAIJ, 148297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1483a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1484a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 148897304618SKris Buschelman /*10*/ 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 14912798e883SHong Zhang MatRelax_MPISBAIJ, 1492a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 149397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1494a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1495a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1496a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1497a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 149897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1499a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1502a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 150397304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 150897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1509b5df2d14SHong Zhang 0, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 151397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay 0, 1516a30f8f8cSSatish Balay 0, 1517a30f8f8cSSatish Balay 0, 151897304618SKris Buschelman /*40*/ 0, 15190b15b8e2SSatish Balay 0, 15200b15b8e2SSatish Balay 0, 1521a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1522a30f8f8cSSatish Balay 0, 152397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1524a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 152897304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 153397304618SKris Buschelman /*55*/ 0, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 153897304618SKris Buschelman /*60*/ 0, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay 0, 15418a124369SBarry Smith MatGetPetscMaps_Petsc, 154224d5174aSHong Zhang 0, 154397304618SKris Buschelman /*65*/ 0, 154424d5174aSHong Zhang 0, 154524d5174aSHong Zhang 0, 154624d5174aSHong Zhang 0, 154724d5174aSHong Zhang 0, 154897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 154924d5174aSHong Zhang 0, 155097304618SKris Buschelman 0, 155197304618SKris Buschelman 0, 155297304618SKris Buschelman 0, 155397304618SKris Buschelman /*75*/ 0, 155497304618SKris Buschelman 0, 155597304618SKris Buschelman 0, 155697304618SKris Buschelman 0, 155797304618SKris Buschelman 0, 155897304618SKris Buschelman /*80*/ 0, 155997304618SKris Buschelman 0, 156097304618SKris Buschelman 0, 156197304618SKris Buschelman 0, 156297304618SKris Buschelman 0, 156397304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ 156497304618SKris Buschelman }; 1565a30f8f8cSSatish Balay 1566a30f8f8cSSatish Balay 1567a30f8f8cSSatish Balay EXTERN_C_BEGIN 15684a2ae208SSatish Balay #undef __FUNCT__ 15694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1570a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1571a30f8f8cSSatish Balay { 1572a30f8f8cSSatish Balay PetscFunctionBegin; 1573a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1574a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1575a30f8f8cSSatish Balay PetscFunctionReturn(0); 1576a30f8f8cSSatish Balay } 1577a30f8f8cSSatish Balay EXTERN_C_END 1578a30f8f8cSSatish Balay 1579273d9f13SBarry Smith EXTERN_C_BEGIN 15804a2ae208SSatish Balay #undef __FUNCT__ 1581a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1582a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1583a23d5eceSKris Buschelman { 1584a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1585a23d5eceSKris Buschelman int ierr,i,mbs,Mbs; 1586a23d5eceSKris Buschelman 1587a23d5eceSKris Buschelman PetscFunctionBegin; 1588a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1589a23d5eceSKris Buschelman 1590a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1591a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1592a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1593a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1594a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1595a23d5eceSKris Buschelman if (d_nnz) { 1596a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1597a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1598a23d5eceSKris Buschelman } 1599a23d5eceSKris Buschelman } 1600a23d5eceSKris Buschelman if (o_nnz) { 1601a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1602a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1603a23d5eceSKris Buschelman } 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1606a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1607a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1608a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1609a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1610a23d5eceSKris Buschelman 1611a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1612a23d5eceSKris Buschelman mbs = B->m/bs; 1613a23d5eceSKris Buschelman Mbs = B->M/bs; 1614a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1615a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1616a23d5eceSKris Buschelman } 1617a23d5eceSKris Buschelman 1618a23d5eceSKris Buschelman b->bs = bs; 1619a23d5eceSKris Buschelman b->bs2 = bs*bs; 1620a23d5eceSKris Buschelman b->mbs = mbs; 1621a23d5eceSKris Buschelman b->nbs = mbs; 1622a23d5eceSKris Buschelman b->Mbs = Mbs; 1623a23d5eceSKris Buschelman b->Nbs = Mbs; 1624a23d5eceSKris Buschelman 1625a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1626a23d5eceSKris Buschelman b->rowners[0] = 0; 1627a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1628a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1629a23d5eceSKris Buschelman } 1630a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1631a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1632a23d5eceSKris Buschelman b->cstart = b->rstart; 1633a23d5eceSKris Buschelman b->cend = b->rend; 1634a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1635a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1636a23d5eceSKris Buschelman } 1637a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1638a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1639a23d5eceSKris Buschelman 1640a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1641a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1642a23d5eceSKris Buschelman 1643a23d5eceSKris Buschelman 1644a23d5eceSKris Buschelman ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1645a23d5eceSKris Buschelman PetscLogObjectParent(B,b->A); 1646a23d5eceSKris Buschelman ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1647a23d5eceSKris Buschelman PetscLogObjectParent(B,b->B); 1648a23d5eceSKris Buschelman 1649a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1650a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1651a23d5eceSKris Buschelman 1652a23d5eceSKris Buschelman PetscFunctionReturn(0); 1653a23d5eceSKris Buschelman } 1654a23d5eceSKris Buschelman EXTERN_C_END 1655a23d5eceSKris Buschelman 16560bad9183SKris Buschelman /*MC 1657fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16580bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16590bad9183SKris Buschelman 16600bad9183SKris Buschelman Options Database Keys: 16610bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16620bad9183SKris Buschelman 16630bad9183SKris Buschelman Level: beginner 16640bad9183SKris Buschelman 16650bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16660bad9183SKris Buschelman M*/ 16670bad9183SKris Buschelman 1668a23d5eceSKris Buschelman EXTERN_C_BEGIN 1669a23d5eceSKris Buschelman #undef __FUNCT__ 16704a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1671b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1672b5df2d14SHong Zhang { 1673b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1674ca54ac64SHong Zhang int ierr; 1675b5df2d14SHong Zhang PetscTruth flg; 1676b5df2d14SHong Zhang 1677b5df2d14SHong Zhang PetscFunctionBegin; 1678b5df2d14SHong Zhang 1679b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1680b0a32e0cSBarry Smith B->data = (void*)b; 1681b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1682b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1683b5df2d14SHong Zhang 1684b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1685b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1686b5df2d14SHong Zhang B->mapping = 0; 1687b5df2d14SHong Zhang B->factor = 0; 1688b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1689b5df2d14SHong Zhang 1690b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1691b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1692b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1693b5df2d14SHong Zhang 1694b5df2d14SHong Zhang /* build local table of row and column ownerships */ 169582502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1696273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1697273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1698b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1699b5df2d14SHong Zhang 1700b5df2d14SHong Zhang /* build cache for off array entries formed */ 1701b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1702b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1703b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1704b5df2d14SHong Zhang b->garray = PETSC_NULL; 1705b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1706b5df2d14SHong Zhang 1707f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1708b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 170964a35ccbSBarry Smith b->setvalueslen = 0; 1710b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1711b5df2d14SHong Zhang #endif 1712b5df2d14SHong Zhang 1713b5df2d14SHong Zhang /* stuff used in block assembly */ 1714b5df2d14SHong Zhang b->barray = 0; 1715b5df2d14SHong Zhang 1716b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1717b5df2d14SHong Zhang b->lvec = 0; 1718b5df2d14SHong Zhang b->Mvctx = 0; 171940781036SHong Zhang b->slvec0 = 0; 172040781036SHong Zhang b->slvec0b = 0; 172140781036SHong Zhang b->slvec1 = 0; 172240781036SHong Zhang b->slvec1a = 0; 172340781036SHong Zhang b->slvec1b = 0; 172440781036SHong Zhang b->sMvctx = 0; 1725b5df2d14SHong Zhang 1726b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1727b5df2d14SHong Zhang b->rowindices = 0; 1728b5df2d14SHong Zhang b->rowvalues = 0; 1729b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1730b5df2d14SHong Zhang 1731b5df2d14SHong Zhang /* hash table stuff */ 1732b5df2d14SHong Zhang b->ht = 0; 1733b5df2d14SHong Zhang b->hd = 0; 1734b5df2d14SHong Zhang b->ht_size = 0; 1735b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1736b5df2d14SHong Zhang b->ht_fact = 0; 1737b5df2d14SHong Zhang b->ht_total_ct = 0; 1738b5df2d14SHong Zhang b->ht_insert_ct = 0; 1739b5df2d14SHong Zhang 1740e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1741b5df2d14SHong Zhang if (flg) { 1742f6275e2eSBarry Smith PetscReal fact = 1.39; 1743b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1744e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1745b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1746b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1747b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1748b5df2d14SHong Zhang } 1749b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1750b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1751b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1752b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1753b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1754b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1755b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1756b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1757b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1758a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1759a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1760a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1761b5df2d14SHong Zhang PetscFunctionReturn(0); 1762b5df2d14SHong Zhang } 1763273d9f13SBarry Smith EXTERN_C_END 1764b5df2d14SHong Zhang 1765209238afSKris Buschelman /*MC 1766002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1767209238afSKris Buschelman 1768209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1769209238afSKris Buschelman and MATMPISBAIJ otherwise. 1770209238afSKris Buschelman 1771209238afSKris Buschelman Options Database Keys: 1772209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1773209238afSKris Buschelman 1774209238afSKris Buschelman Level: beginner 1775209238afSKris Buschelman 1776209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1777209238afSKris Buschelman M*/ 1778209238afSKris Buschelman 1779209238afSKris Buschelman EXTERN_C_BEGIN 1780209238afSKris Buschelman #undef __FUNCT__ 1781209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1782209238afSKris Buschelman int MatCreate_SBAIJ(Mat A) { 1783209238afSKris Buschelman int ierr,size; 1784209238afSKris Buschelman 1785209238afSKris Buschelman PetscFunctionBegin; 1786209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1787209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1788209238afSKris Buschelman if (size == 1) { 1789209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1790209238afSKris Buschelman } else { 1791209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1792209238afSKris Buschelman } 1793209238afSKris Buschelman PetscFunctionReturn(0); 1794209238afSKris Buschelman } 1795209238afSKris Buschelman EXTERN_C_END 1796209238afSKris Buschelman 17974a2ae208SSatish Balay #undef __FUNCT__ 17984a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1799b5df2d14SHong Zhang /*@C 1800b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1801b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1802b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1803b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1804b5df2d14SHong Zhang 1805b5df2d14SHong Zhang Collective on Mat 1806b5df2d14SHong Zhang 1807b5df2d14SHong Zhang Input Parameters: 1808b5df2d14SHong Zhang + A - the matrix 1809b5df2d14SHong Zhang . bs - size of blockk 1810b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1811b5df2d14SHong Zhang submatrix (same for all local rows) 1812b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18136d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18146d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18156d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1816b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1817b5df2d14SHong Zhang submatrix (same for all local rows). 1818b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1819b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1820b5df2d14SHong Zhang each block row) or PETSC_NULL. 1821b5df2d14SHong Zhang 1822b5df2d14SHong Zhang 1823b5df2d14SHong Zhang Options Database Keys: 1824b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1825b5df2d14SHong Zhang block calculations (much slower) 1826b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1827b5df2d14SHong Zhang 1828b5df2d14SHong Zhang Notes: 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1831b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang Storage Information: 1834b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1835b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1836b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1837b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1838b5df2d14SHong Zhang 1839b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1840b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1841b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1842b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1843b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1846b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang .vb 1849b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1850b5df2d14SHong Zhang ------------------- 1851b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1852b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1853b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1854b5df2d14SHong Zhang ------------------- 1855b5df2d14SHong Zhang .ve 1856b5df2d14SHong Zhang 1857b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1858b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18596d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18606d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1861b5df2d14SHong Zhang 18626d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18636d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1864b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1865b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1866b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1867b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1868b5df2d14SHong Zhang matrices. 1869b5df2d14SHong Zhang 1870b5df2d14SHong Zhang Level: intermediate 1871b5df2d14SHong Zhang 1872b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1873b5df2d14SHong Zhang 1874b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1875b5df2d14SHong Zhang @*/ 1876ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 1877b5df2d14SHong Zhang { 1878ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 1879b5df2d14SHong Zhang 1880b5df2d14SHong Zhang PetscFunctionBegin; 1881a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1882a23d5eceSKris Buschelman if (f) { 1883a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1884b5df2d14SHong Zhang } 1885b5df2d14SHong Zhang PetscFunctionReturn(0); 1886b5df2d14SHong Zhang } 1887b5df2d14SHong Zhang 18884a2ae208SSatish Balay #undef __FUNCT__ 18894a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1890a30f8f8cSSatish Balay /*@C 1891a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1892a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1893a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1894a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1895a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1896a30f8f8cSSatish Balay 1897a30f8f8cSSatish Balay Collective on MPI_Comm 1898a30f8f8cSSatish Balay 1899a30f8f8cSSatish Balay Input Parameters: 1900a30f8f8cSSatish Balay + comm - MPI communicator 1901a30f8f8cSSatish Balay . bs - size of blockk 1902a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1903a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1904a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1905a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1906a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1907a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1908a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1909a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1910a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1911a30f8f8cSSatish Balay submatrix (same for all local rows) 1912a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19136d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19146d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19156d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1916a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1917a30f8f8cSSatish Balay submatrix (same for all local rows). 1918a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1919a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1920a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1921a30f8f8cSSatish Balay 1922a30f8f8cSSatish Balay Output Parameter: 1923a30f8f8cSSatish Balay . A - the matrix 1924a30f8f8cSSatish Balay 1925a30f8f8cSSatish Balay Options Database Keys: 1926a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1927a30f8f8cSSatish Balay block calculations (much slower) 1928a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1929a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1930a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1931a30f8f8cSSatish Balay 1932a30f8f8cSSatish Balay Notes: 1933a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1934a30f8f8cSSatish Balay (possibly both). 1935a30f8f8cSSatish Balay 1936a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1937a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1938a30f8f8cSSatish Balay 1939a30f8f8cSSatish Balay Storage Information: 1940a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1941a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1942a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1943a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1946a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1947a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1948a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1949a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1950a30f8f8cSSatish Balay 1951a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1952a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1953a30f8f8cSSatish Balay 1954a30f8f8cSSatish Balay .vb 1955a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1956a30f8f8cSSatish Balay ------------------- 1957a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1958a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1959a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1960a30f8f8cSSatish Balay ------------------- 1961a30f8f8cSSatish Balay .ve 1962a30f8f8cSSatish Balay 1963a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1964a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19656d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19666d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1967a30f8f8cSSatish Balay 19686d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19696d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1970a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1971a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1972a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1973a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1974a30f8f8cSSatish Balay matrices. 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay Level: intermediate 1977a30f8f8cSSatish Balay 1978a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1979a30f8f8cSSatish Balay 1980a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1981a30f8f8cSSatish Balay @*/ 1982a30f8f8cSSatish Balay 1983ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 1984a30f8f8cSSatish Balay { 1985273d9f13SBarry Smith int ierr,size; 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay PetscFunctionBegin; 1988b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1989273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1990273d9f13SBarry Smith if (size > 1) { 1991b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1992b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1993273d9f13SBarry Smith } else { 1994273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1995273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1996273d9f13SBarry Smith } 1997a30f8f8cSSatish Balay PetscFunctionReturn(0); 1998a30f8f8cSSatish Balay } 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay 20014a2ae208SSatish Balay #undef __FUNCT__ 20024a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 2003a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2004a30f8f8cSSatish Balay { 2005a30f8f8cSSatish Balay Mat mat; 2006a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2007a30f8f8cSSatish Balay int ierr,len=0; 2008a30f8f8cSSatish Balay 2009a30f8f8cSSatish Balay PetscFunctionBegin; 2010a30f8f8cSSatish Balay *newmat = 0; 2011b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2012b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 2013273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 2014b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2015a30f8f8cSSatish Balay a->bs = oldmat->bs; 2016a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2017a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2018a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2019a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2020a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2021a30f8f8cSSatish Balay 2022a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2023a30f8f8cSSatish Balay a->rend = oldmat->rend; 2024a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2025a30f8f8cSSatish Balay a->cend = oldmat->cend; 2026a30f8f8cSSatish Balay a->size = oldmat->size; 2027a30f8f8cSSatish Balay a->rank = oldmat->rank; 2028a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2029a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2030a30f8f8cSSatish Balay a->rowindices = 0; 2031a30f8f8cSSatish Balay a->rowvalues = 0; 2032a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2033a30f8f8cSSatish Balay a->barray = 0; 2034a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2035a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2036a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2037a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2038a30f8f8cSSatish Balay 2039a30f8f8cSSatish Balay /* hash table stuff */ 2040a30f8f8cSSatish Balay a->ht = 0; 2041a30f8f8cSSatish Balay a->hd = 0; 2042a30f8f8cSSatish Balay a->ht_size = 0; 2043a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2044a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2045a30f8f8cSSatish Balay a->ht_total_ct = 0; 2046a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2047a30f8f8cSSatish Balay 204882502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 2049b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 2050a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 2051a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 2052a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2053a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2054a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2055a30f8f8cSSatish Balay if (oldmat->colmap) { 2056a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2057a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2058a30f8f8cSSatish Balay #else 205982502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2060b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2061a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2062a30f8f8cSSatish Balay #endif 2063a30f8f8cSSatish Balay } else a->colmap = 0; 2064a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 206582502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2066b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2067a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2068a30f8f8cSSatish Balay } else a->garray = 0; 2069a30f8f8cSSatish Balay 2070a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2071b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2072a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2073a30f8f8cSSatish Balay 2074b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 2075a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2076b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2077a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2078b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2079b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2080a30f8f8cSSatish Balay *newmat = mat; 2081a30f8f8cSSatish Balay PetscFunctionReturn(0); 2082a30f8f8cSSatish Balay } 2083a30f8f8cSSatish Balay 2084a30f8f8cSSatish Balay #include "petscsys.h" 2085a30f8f8cSSatish Balay 20864a2ae208SSatish Balay #undef __FUNCT__ 20874a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2088b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 2089a30f8f8cSSatish Balay { 2090a30f8f8cSSatish Balay Mat A; 2091a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 209287828ca2SBarry Smith PetscScalar *vals,*buf; 2093a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2094a30f8f8cSSatish Balay MPI_Status status; 2095a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2096a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2097a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2098a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2099a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2100a30f8f8cSSatish Balay 2101a30f8f8cSSatish Balay PetscFunctionBegin; 2102b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay 2104a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2105a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2106a30f8f8cSSatish Balay if (!rank) { 2107b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2108a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2109552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2110a30f8f8cSSatish Balay if (header[3] < 0) { 211129bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2112a30f8f8cSSatish Balay } 2113a30f8f8cSSatish Balay } 2114a30f8f8cSSatish Balay 2115a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2116a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2117a30f8f8cSSatish Balay 211829bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2119a30f8f8cSSatish Balay 2120a30f8f8cSSatish Balay /* 2121a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2122a30f8f8cSSatish Balay divisible by the blocksize 2123a30f8f8cSSatish Balay */ 2124a30f8f8cSSatish Balay Mbs = M/bs; 2125a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2126a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2127a30f8f8cSSatish Balay else Mbs++; 2128a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2129b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2130a30f8f8cSSatish Balay } 2131a30f8f8cSSatish Balay 2132a30f8f8cSSatish Balay /* determine ownership of all rows */ 2133a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2134a30f8f8cSSatish Balay m = mbs*bs; 2135b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2136a30f8f8cSSatish Balay browners = rowners + size + 1; 2137a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2138a30f8f8cSSatish Balay rowners[0] = 0; 2139a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2140a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2141a30f8f8cSSatish Balay rstart = rowners[rank]; 2142a30f8f8cSSatish Balay rend = rowners[rank+1]; 2143a30f8f8cSSatish Balay 2144a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 214582502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2146a30f8f8cSSatish Balay if (!rank) { 2147b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2148a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2149a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 215082502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2152a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay } else { 2155a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay } 2157a30f8f8cSSatish Balay 21580222edb1SHong Zhang if (!rank) { /* procs[0] */ 2159a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 216082502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2162a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2163a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2164a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2165a30f8f8cSSatish Balay } 2166a30f8f8cSSatish Balay } 2167a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2168a30f8f8cSSatish Balay 2169a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2170a30f8f8cSSatish Balay maxnz = 0; 2171a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2172a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2173a30f8f8cSSatish Balay } 217482502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2175a30f8f8cSSatish Balay 2176a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2177a30f8f8cSSatish Balay nz = procsnz[0]; 217882502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2179a30f8f8cSSatish Balay mycols = ibuf; 2180a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2181a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2183a30f8f8cSSatish Balay 2184a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2185a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2186a30f8f8cSSatish Balay nz = procsnz[i]; 2187a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2188a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2191a30f8f8cSSatish Balay if (size != 1) { 2192a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2193a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2194a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2195a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2196a30f8f8cSSatish Balay } 2197a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21980222edb1SHong Zhang } else { /* procs[i], i>0 */ 2199a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2200a30f8f8cSSatish Balay nz = 0; 2201a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2202a30f8f8cSSatish Balay nz += locrowlens[i]; 2203a30f8f8cSSatish Balay } 220482502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay mycols = ibuf; 2206a30f8f8cSSatish Balay /* receive message of column indices*/ 2207a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2208a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 220929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2210a30f8f8cSSatish Balay } 2211a30f8f8cSSatish Balay 2212a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 221382502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 221582502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2216a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2217a30f8f8cSSatish Balay masked1 = mask + Mbs; 2218a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2219a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2220a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2221a30f8f8cSSatish Balay dcount = 0; 2222a30f8f8cSSatish Balay odcount = 0; 2223a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2224a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2225a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22260222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2227a30f8f8cSSatish Balay if (!mask[tmp]) { 2228a30f8f8cSSatish Balay mask[tmp] = 1; 22290222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22300222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2231a30f8f8cSSatish Balay } 2232a30f8f8cSSatish Balay } 2233a30f8f8cSSatish Balay rowcount++; 2234a30f8f8cSSatish Balay } 2235a30f8f8cSSatish Balay 22360222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22370222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2238a30f8f8cSSatish Balay 2239a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2240a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2241a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2242a30f8f8cSSatish Balay } 2243a30f8f8cSSatish Balay 2244a30f8f8cSSatish Balay /* create our matrix */ 224522191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 224622191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 224722191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2248273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2249a30f8f8cSSatish Balay 2250a30f8f8cSSatish Balay if (!rank) { 225187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2252a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2253a30f8f8cSSatish Balay nz = procsnz[0]; 2254a30f8f8cSSatish Balay vals = buf; 2255a30f8f8cSSatish Balay mycols = ibuf; 2256a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2257a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2259a30f8f8cSSatish Balay 2260a30f8f8cSSatish Balay /* insert into matrix */ 2261a30f8f8cSSatish Balay jj = rstart*bs; 2262a30f8f8cSSatish Balay for (i=0; i<m; i++) { 22637e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2264a30f8f8cSSatish Balay mycols += locrowlens[i]; 2265a30f8f8cSSatish Balay vals += locrowlens[i]; 2266a30f8f8cSSatish Balay jj++; 2267a30f8f8cSSatish Balay } 22687e06b45fSHong Zhang 2269a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2270a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2271a30f8f8cSSatish Balay nz = procsnz[i]; 2272a30f8f8cSSatish Balay vals = buf; 2273a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2274a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2275a30f8f8cSSatish Balay } 2276a30f8f8cSSatish Balay /* the last proc */ 2277a30f8f8cSSatish Balay if (size != 1){ 2278a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2279a30f8f8cSSatish Balay vals = buf; 2280a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2281a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2282a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2283a30f8f8cSSatish Balay } 2284a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 22857e06b45fSHong Zhang 2286a30f8f8cSSatish Balay } else { 2287a30f8f8cSSatish Balay /* receive numeric values */ 228887828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2289a30f8f8cSSatish Balay 2290a30f8f8cSSatish Balay /* receive message of values*/ 2291a30f8f8cSSatish Balay vals = buf; 2292a30f8f8cSSatish Balay mycols = ibuf; 2293a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2294a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 229529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2296a30f8f8cSSatish Balay 2297a30f8f8cSSatish Balay /* insert into matrix */ 2298a30f8f8cSSatish Balay jj = rstart*bs; 2299a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2300a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2301a30f8f8cSSatish Balay mycols += locrowlens[i]; 2302a30f8f8cSSatish Balay vals += locrowlens[i]; 2303a30f8f8cSSatish Balay jj++; 2304a30f8f8cSSatish Balay } 2305a30f8f8cSSatish Balay } 23067e06b45fSHong Zhang 2307a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2308a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2309a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2310a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2311a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2312a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2313a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2314a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 231522191285SKris Buschelman *newmat = A; 2316a30f8f8cSSatish Balay PetscFunctionReturn(0); 2317a30f8f8cSSatish Balay } 2318a30f8f8cSSatish Balay 23194a2ae208SSatish Balay #undef __FUNCT__ 23204a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2321a30f8f8cSSatish Balay /*@ 2322a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2323a30f8f8cSSatish Balay 2324a30f8f8cSSatish Balay Input Parameters: 2325a30f8f8cSSatish Balay . mat - the matrix 2326a30f8f8cSSatish Balay . fact - factor 2327a30f8f8cSSatish Balay 2328a30f8f8cSSatish Balay Collective on Mat 2329a30f8f8cSSatish Balay 2330a30f8f8cSSatish Balay Level: advanced 2331a30f8f8cSSatish Balay 2332a30f8f8cSSatish Balay Notes: 2333a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2334a30f8f8cSSatish Balay 2335a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2336a30f8f8cSSatish Balay 2337a30f8f8cSSatish Balay .seealso: MatSetOption() 2338a30f8f8cSSatish Balay @*/ 2339a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2340a30f8f8cSSatish Balay { 2341a30f8f8cSSatish Balay PetscFunctionBegin; 234229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 234396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2344a30f8f8cSSatish Balay } 234524d5174aSHong Zhang 23464a2ae208SSatish Balay #undef __FUNCT__ 23474a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 234824d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 234924d5174aSHong Zhang { 235024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2351f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2352ca54ac64SHong Zhang PetscReal atmp; 235387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2354ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2355154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 235687828ca2SBarry Smith PetscScalar *va; 23578a1c53f2SBarry Smith MatScalar *ba; 2358f4c0e9e4SHong Zhang MPI_Status stat; 235924d5174aSHong Zhang 236024d5174aSHong Zhang PetscFunctionBegin; 2361d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2362f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2363f4c0e9e4SHong Zhang 236456faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 236556faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2366f4c0e9e4SHong Zhang 2367f4c0e9e4SHong Zhang bs = a->bs; 2368f4c0e9e4SHong Zhang mbs = a->mbs; 2369f4c0e9e4SHong Zhang Mbs = a->Mbs; 2370f4c0e9e4SHong Zhang ba = b->a; 2371f4c0e9e4SHong Zhang bi = b->i; 2372f4c0e9e4SHong Zhang bj = b->j; 2373ca54ac64SHong Zhang /* 237456faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 237556faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2376ca54ac64SHong Zhang */ 2377f4c0e9e4SHong Zhang 2378f4c0e9e4SHong Zhang /* find ownerships */ 2379f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2380f4c0e9e4SHong Zhang /* 238104d41228SHong Zhang if (!rank){ 238204d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2383f4c0e9e4SHong Zhang } 2384f4c0e9e4SHong Zhang */ 2385f4c0e9e4SHong Zhang 2386f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 238782502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2388ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2389f4c0e9e4SHong Zhang 2390f4c0e9e4SHong Zhang /* row_max for B */ 2391b8475685SHong Zhang if (rank != size-1){ 2392f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2393f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2394f4c0e9e4SHong Zhang brow = bs*i; 2395f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2396f4c0e9e4SHong Zhang bcol = bs*(*bj); 2397f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2398ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 239904d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2400ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2401f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2402f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2403ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2404f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2405ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2406f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2407f4c0e9e4SHong Zhang } 2408f4c0e9e4SHong Zhang } 2409f4c0e9e4SHong Zhang bj++; 2410f4c0e9e4SHong Zhang } 2411f4c0e9e4SHong Zhang } 241204d41228SHong Zhang /* 241304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 241404d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 241504d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 241604d41228SHong Zhang */ 2417f4c0e9e4SHong Zhang 2418f4c0e9e4SHong Zhang /* send values to its owners */ 2419f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2420f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2421ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 242256faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2423ca54ac64SHong Zhang /* 242456faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 242556faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2426ca54ac64SHong Zhang */ 2427ca54ac64SHong Zhang } 2428f4c0e9e4SHong Zhang } 2429f4c0e9e4SHong Zhang 2430f4c0e9e4SHong Zhang /* receive values */ 2431ca54ac64SHong Zhang if (rank){ 2432f4c0e9e4SHong Zhang rvalues = work; 2433ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2434f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 243556faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2436f4c0e9e4SHong Zhang /* process values */ 2437f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2438ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2439f4c0e9e4SHong Zhang } 2440ca54ac64SHong Zhang /* 244156faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 244256faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2443ca54ac64SHong Zhang */ 2444f4c0e9e4SHong Zhang } 2445ca54ac64SHong Zhang } 2446f4c0e9e4SHong Zhang 2447f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2448ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 244924d5174aSHong Zhang PetscFunctionReturn(0); 245024d5174aSHong Zhang } 24512798e883SHong Zhang 24522798e883SHong Zhang #undef __FUNCT__ 24532798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2454c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 24552798e883SHong Zhang { 24562798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2457ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2458ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2459ffe4fb16SHong Zhang Vec bb1; 2460ffe4fb16SHong Zhang 2461ffe4fb16SHong Zhang PetscFunctionBegin; 2462ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2463ffe4fb16SHong Zhang if (bs > 1) 2464ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2465ffe4fb16SHong Zhang 2466ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2467ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2468ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2469ffe4fb16SHong Zhang its--; 2470ffe4fb16SHong Zhang } 2471ffe4fb16SHong Zhang 2472ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2473ffe4fb16SHong Zhang while (its--){ 2474ffe4fb16SHong Zhang 2475ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2476ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2477ffe4fb16SHong Zhang 2478ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2479ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2480ffe4fb16SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2481ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2482ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2483ffe4fb16SHong Zhang 2484ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2485ffe4fb16SHong Zhang 2486ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2487ffe4fb16SHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2488ffe4fb16SHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2489ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2490ffe4fb16SHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2491ffe4fb16SHong Zhang 2492ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2493ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2494ffe4fb16SHong Zhang 2495ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2496ffe4fb16SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2497ffe4fb16SHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2498ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2499ffe4fb16SHong Zhang 2500ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2501ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2502ffe4fb16SHong Zhang 2503ffe4fb16SHong Zhang /* local diagonal sweep */ 2504ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2505ffe4fb16SHong Zhang } 2506ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2507ffe4fb16SHong Zhang } else { 2508ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2509ffe4fb16SHong Zhang } 2510ffe4fb16SHong Zhang PetscFunctionReturn(0); 2511ffe4fb16SHong Zhang } 2512ffe4fb16SHong Zhang 2513ffe4fb16SHong Zhang #undef __FUNCT__ 2514ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2515ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2516ffe4fb16SHong Zhang { 2517ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25182798e883SHong Zhang int ierr; 2519d05c616dSSatish Balay PetscScalar mone=-1.0; 25202798e883SHong Zhang Vec lvec1,bb1; 25212798e883SHong Zhang 25222798e883SHong Zhang PetscFunctionBegin; 252391723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25242798e883SHong Zhang if (mat->bs > 1) 25252798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25262798e883SHong Zhang 2527c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25282798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2529bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25302798e883SHong Zhang its--; 25312798e883SHong Zhang } 25322798e883SHong Zhang 25332798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25342798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25352798e883SHong Zhang while (its--){ 25362798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25372798e883SHong Zhang 25382798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25392798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25402798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25412798e883SHong Zhang 25422798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25432798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25442798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25452798e883SHong Zhang 25462798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25472798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25482798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 25492798e883SHong Zhang 25502798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25512798e883SHong Zhang 2552c14dc6b6SHong Zhang /* diagonal sweep */ 2553bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 25542798e883SHong Zhang } 25552798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 25562798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2557c14dc6b6SHong Zhang } else { 2558c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2559c14dc6b6SHong Zhang } 25602798e883SHong Zhang PetscFunctionReturn(0); 25612798e883SHong Zhang } 25622798e883SHong Zhang 2563