xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision a45adfd634f538af0df75033dc42d977b3d42dfd)
173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h"
5a30f8f8cSSatish Balay #include "mpisbaij.h"
6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
7a30f8f8cSSatish Balay 
8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat);
940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat);
11f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []);
12f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode);
13f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode);
1487828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
1587828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
16a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat);
1787828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
1887828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
19d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec);
20c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
21a30f8f8cSSatish Balay 
22a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2387828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
24a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
25a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
26a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
27a30f8f8cSSatish Balay    into the single precision data structures.
28a30f8f8cSSatish Balay */
29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
30f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
31f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
32f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
33f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
34f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
35a30f8f8cSSatish Balay #else
36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
41a30f8f8cSSatish Balay #endif
42a30f8f8cSSatish Balay 
43a30f8f8cSSatish Balay EXTERN_C_BEGIN
444a2ae208SSatish Balay #undef __FUNCT__
454a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat)
47a30f8f8cSSatish Balay {
48f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
49a30f8f8cSSatish Balay   int          ierr;
50a30f8f8cSSatish Balay 
51a30f8f8cSSatish Balay   PetscFunctionBegin;
52a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   PetscFunctionReturn(0);
55a30f8f8cSSatish Balay }
56a30f8f8cSSatish Balay EXTERN_C_END
57a30f8f8cSSatish Balay 
58a30f8f8cSSatish Balay EXTERN_C_BEGIN
594a2ae208SSatish Balay #undef __FUNCT__
604a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat)
62a30f8f8cSSatish Balay {
63f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
64a30f8f8cSSatish Balay   int          ierr;
65a30f8f8cSSatish Balay 
66a30f8f8cSSatish Balay   PetscFunctionBegin;
67a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   PetscFunctionReturn(0);
70a30f8f8cSSatish Balay }
71a30f8f8cSSatish Balay EXTERN_C_END
72a30f8f8cSSatish Balay 
73a30f8f8cSSatish Balay /*
74a30f8f8cSSatish Balay      Local utility routine that creates a mapping from the global column
75a30f8f8cSSatish Balay    number to the local number in the off-diagonal part of the local
76a30f8f8cSSatish Balay    storage of the matrix.  This is done in a non scable way since the
77a30f8f8cSSatish Balay    length of colmap equals the global matrix length.
78a30f8f8cSSatish Balay */
794a2ae208SSatish Balay #undef __FUNCT__
804a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private"
81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat)
82a30f8f8cSSatish Balay {
83a30f8f8cSSatish Balay   PetscFunctionBegin;
8429bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
8596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
86a30f8f8cSSatish Balay }
87a30f8f8cSSatish Balay 
88a30f8f8cSSatish Balay #define CHUNKSIZE  10
89a30f8f8cSSatish Balay 
90a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
91a30f8f8cSSatish Balay { \
92a30f8f8cSSatish Balay  \
93a30f8f8cSSatish Balay     brow = row/bs;  \
94a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
95a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
96a30f8f8cSSatish Balay       bcol = col/bs; \
97a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
98a30f8f8cSSatish Balay       low = 0; high = nrow; \
99a30f8f8cSSatish Balay       while (high-low > 3) { \
100a30f8f8cSSatish Balay         t = (low+high)/2; \
101a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
102a30f8f8cSSatish Balay         else              low  = t; \
103a30f8f8cSSatish Balay       } \
104a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
105a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
106a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
107a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
108a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
109a30f8f8cSSatish Balay           else                    *bap  = value;  \
110a30f8f8cSSatish Balay           goto a_noinsert; \
111a30f8f8cSSatish Balay         } \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
114*a45adfd6SMatthew Knepley       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \
115a30f8f8cSSatish Balay       if (nrow >= rmax) { \
116a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
117a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
118a30f8f8cSSatish Balay         MatScalar *new_a; \
119a30f8f8cSSatish Balay  \
120*a45adfd6SMatthew Knepley         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \
121a30f8f8cSSatish Balay  \
122a30f8f8cSSatish Balay         /* malloc new storage space */ \
123a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
12482502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
125a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
126a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
127a30f8f8cSSatish Balay  \
128a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
129a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
130a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
131a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
132a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
133a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
134a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13587828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
136a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
137a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
138a30f8f8cSSatish Balay         /* free up old matrix storage */ \
139a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
140a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
141a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
142a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
143a30f8f8cSSatish Balay         } \
144a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
145a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
146a30f8f8cSSatish Balay  \
147a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
148a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
149b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
150a30f8f8cSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE; \
151a30f8f8cSSatish Balay         a->reallocs++; \
152a30f8f8cSSatish Balay         a->s_nz++; \
153a30f8f8cSSatish Balay       } \
154a30f8f8cSSatish Balay       N = nrow++ - 1;  \
155a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
156a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
157a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
158a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
159a30f8f8cSSatish Balay       } \
160a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
161a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
162a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
163a30f8f8cSSatish Balay       a_noinsert:; \
164a30f8f8cSSatish Balay     ailen[brow] = nrow; \
165a30f8f8cSSatish Balay }
166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
167a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
168a30f8f8cSSatish Balay { \
169a30f8f8cSSatish Balay     brow = row/bs;  \
170a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
171a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
172a30f8f8cSSatish Balay       bcol = col/bs; \
173a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
174a30f8f8cSSatish Balay       low = 0; high = nrow; \
175a30f8f8cSSatish Balay       while (high-low > 3) { \
176a30f8f8cSSatish Balay         t = (low+high)/2; \
177a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
178a30f8f8cSSatish Balay         else              low  = t; \
179a30f8f8cSSatish Balay       } \
180a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
181a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
182a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
183a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
184a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
185a30f8f8cSSatish Balay           else                    *bap  = value;  \
186a30f8f8cSSatish Balay           goto b_noinsert; \
187a30f8f8cSSatish Balay         } \
188a30f8f8cSSatish Balay       } \
189a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
190*a45adfd6SMatthew Knepley       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \
191a30f8f8cSSatish Balay       if (nrow >= rmax) { \
192a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
193a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
194a30f8f8cSSatish Balay         MatScalar *new_a; \
195a30f8f8cSSatish Balay  \
196*a45adfd6SMatthew Knepley         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \
197a30f8f8cSSatish Balay  \
198a30f8f8cSSatish Balay         /* malloc new storage space */ \
199a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
20082502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
201a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
202a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
203a30f8f8cSSatish Balay  \
204a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
205a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
206a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
207a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
208a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
209a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
210a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
211a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
212a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
213a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
214a30f8f8cSSatish Balay         /* free up old matrix storage */ \
215a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
216a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
217a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
218a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
219a30f8f8cSSatish Balay         } \
220a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
221a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
222a30f8f8cSSatish Balay  \
223a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
224a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
225b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
226a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
227a30f8f8cSSatish Balay         b->reallocs++; \
228a30f8f8cSSatish Balay         b->nz++; \
229a30f8f8cSSatish Balay       } \
230a30f8f8cSSatish Balay       N = nrow++ - 1;  \
231a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
232a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
233a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
234a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
235a30f8f8cSSatish Balay       } \
236a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
237a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
238a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
239a30f8f8cSSatish Balay       b_noinsert:; \
240a30f8f8cSSatish Balay     bilen[brow] = nrow; \
241a30f8f8cSSatish Balay }
242a30f8f8cSSatish Balay #endif
243a30f8f8cSSatish Balay 
244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2454a2ae208SSatish Balay #undef __FUNCT__
2464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
247f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
248a30f8f8cSSatish Balay {
249a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
250a30f8f8cSSatish Balay   int          ierr,i,N = m*n;
251a30f8f8cSSatish Balay   MatScalar    *vsingle;
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   PetscFunctionBegin;
254a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
255a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
25682502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
257a30f8f8cSSatish Balay     b->setvalueslen  = N;
258a30f8f8cSSatish Balay   }
259a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
260a30f8f8cSSatish Balay 
261a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
262a30f8f8cSSatish Balay     vsingle[i] = v[i];
263a30f8f8cSSatish Balay   }
264a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
265a30f8f8cSSatish Balay   PetscFunctionReturn(0);
266a30f8f8cSSatish Balay }
267a30f8f8cSSatish Balay 
2684a2ae208SSatish Balay #undef __FUNCT__
2694a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
270f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
271a30f8f8cSSatish Balay {
272a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
273a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
274a30f8f8cSSatish Balay   MatScalar   *vsingle;
275a30f8f8cSSatish Balay 
276a30f8f8cSSatish Balay   PetscFunctionBegin;
277a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
278a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
27982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
280a30f8f8cSSatish Balay     b->setvalueslen  = N;
281a30f8f8cSSatish Balay   }
282a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
283a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
284a30f8f8cSSatish Balay     vsingle[i] = v[i];
285a30f8f8cSSatish Balay   }
286a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
287a30f8f8cSSatish Balay   PetscFunctionReturn(0);
288a30f8f8cSSatish Balay }
289a30f8f8cSSatish Balay 
2904a2ae208SSatish Balay #undef __FUNCT__
2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
292f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
293a30f8f8cSSatish Balay {
294a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
295a30f8f8cSSatish Balay   int         ierr,i,N = m*n;
296a30f8f8cSSatish Balay   MatScalar   *vsingle;
297a30f8f8cSSatish Balay 
298a30f8f8cSSatish Balay   PetscFunctionBegin;
29929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3004d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
301a30f8f8cSSatish Balay }
302a30f8f8cSSatish Balay 
3034a2ae208SSatish Balay #undef __FUNCT__
3044a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
305f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
306a30f8f8cSSatish Balay {
307a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
308a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
309a30f8f8cSSatish Balay   MatScalar   *vsingle;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   PetscFunctionBegin;
31229bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3134d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
314a30f8f8cSSatish Balay }
315a30f8f8cSSatish Balay #endif
316a30f8f8cSSatish Balay 
317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
318a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
319a30f8f8cSSatish Balay */
3204a2ae208SSatish Balay #undef __FUNCT__
321e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
322f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
323a30f8f8cSSatish Balay {
324a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
325a30f8f8cSSatish Balay   MatScalar    value;
326b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
327a30f8f8cSSatish Balay   int          ierr,i,j,row,col;
328b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
329a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
330a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
331a30f8f8cSSatish Balay 
332a30f8f8cSSatish Balay   /* Some Variables required in the macro */
333a30f8f8cSSatish Balay   Mat          A = baij->A;
334a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
335a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
336a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
337a30f8f8cSSatish Balay 
338a30f8f8cSSatish Balay   Mat          B = baij->B;
339a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
340a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
341a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
344a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
345a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
346a30f8f8cSSatish Balay 
347a30f8f8cSSatish Balay   /* for stash */
348f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
349f65c83cfSHong Zhang   MatScalar    *v_loc=0;
350a30f8f8cSSatish Balay 
351a30f8f8cSSatish Balay   PetscFunctionBegin;
352a30f8f8cSSatish Balay 
353a30f8f8cSSatish Balay   if(!baij->donotstash){
35482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
35582502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
356a30f8f8cSSatish Balay   }
357a30f8f8cSSatish Balay 
358a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
359a30f8f8cSSatish Balay     if (im[i] < 0) continue;
360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
361590ac198SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1);
362a30f8f8cSSatish Balay #endif
363a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
364a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
365a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
366f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
367a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
368a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
369a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
370a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
371a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
372a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
373a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
374a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
376590ac198SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);}
377a30f8f8cSSatish Balay #endif
378a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
379a30f8f8cSSatish Balay           if (mat->was_assembled) {
380a30f8f8cSSatish Balay             if (!baij->colmap) {
381a30f8f8cSSatish Balay               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
382a30f8f8cSSatish Balay             }
383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
384a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
38571730473SSatish Balay             col  = col - 1;
386a30f8f8cSSatish Balay #else
38771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
388a30f8f8cSSatish Balay #endif
389a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
390a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
391a30f8f8cSSatish Balay               col =  in[j];
392a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
393a30f8f8cSSatish Balay               B = baij->B;
394a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
395a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
396a30f8f8cSSatish Balay               ba=b->a;
39771730473SSatish Balay             } else col += in[j]%bs;
398a30f8f8cSSatish Balay           } else col = in[j];
399a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
400a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
401a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
402a30f8f8cSSatish Balay         }
403a30f8f8cSSatish Balay       }
404a30f8f8cSSatish Balay     } else {  /* off processor entry */
405a30f8f8cSSatish Balay       if (!baij->donotstash) {
406a30f8f8cSSatish Balay         n_loc = 0;
407a30f8f8cSSatish Balay         for (j=0; j<n; j++){
408f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
409a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
410a30f8f8cSSatish Balay           if (roworiented) {
411a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
412a30f8f8cSSatish Balay           } else {
413a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
414a30f8f8cSSatish Balay           }
415a30f8f8cSSatish Balay           n_loc++;
416a30f8f8cSSatish Balay         }
417a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       }
419a30f8f8cSSatish Balay     }
420a30f8f8cSSatish Balay   }
421a30f8f8cSSatish Balay 
422a30f8f8cSSatish Balay   if(!baij->donotstash){
423a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
424a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
425a30f8f8cSSatish Balay   }
426a30f8f8cSSatish Balay   PetscFunctionReturn(0);
427a30f8f8cSSatish Balay }
428a30f8f8cSSatish Balay 
4294a2ae208SSatish Balay #undef __FUNCT__
430e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
431f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
432a30f8f8cSSatish Balay {
4330880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
434f15d580aSBarry Smith   const MatScalar *value;
435f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4360880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
4370880e062SHong Zhang   int             ierr,i,j,ii,jj,row,col,rstart=baij->rstart;
4380880e062SHong Zhang   int             rend=baij->rend,cstart=baij->cstart,stepval;
4390880e062SHong Zhang   int             cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
4400880e062SHong Zhang 
441a30f8f8cSSatish Balay   PetscFunctionBegin;
4420880e062SHong Zhang   if(!barray) {
4430880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4440880e062SHong Zhang     baij->barray = barray;
4450880e062SHong Zhang   }
4460880e062SHong Zhang 
4470880e062SHong Zhang   if (roworiented) {
4480880e062SHong Zhang     stepval = (n-1)*bs;
4490880e062SHong Zhang   } else {
4500880e062SHong Zhang     stepval = (m-1)*bs;
4510880e062SHong Zhang   }
4520880e062SHong Zhang   for (i=0; i<m; i++) {
4530880e062SHong Zhang     if (im[i] < 0) continue;
4540880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
455590ac198SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1);
4560880e062SHong Zhang #endif
4570880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4580880e062SHong Zhang       row = im[i] - rstart;
4590880e062SHong Zhang       for (j=0; j<n; j++) {
4600880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4610880e062SHong Zhang         if ((roworiented) && (n == 1)) {
462f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4630880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
464f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4650880e062SHong Zhang         } else { /* Here a copy is required */
4660880e062SHong Zhang           if (roworiented) {
4670880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4680880e062SHong Zhang           } else {
4690880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4700880e062SHong Zhang           }
4710880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4720880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4730880e062SHong Zhang               *barray++  = *value++;
4740880e062SHong Zhang             }
4750880e062SHong Zhang           }
4760880e062SHong Zhang           barray -=bs2;
4770880e062SHong Zhang         }
4780880e062SHong Zhang 
4790880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4800880e062SHong Zhang           col  = in[j] - cstart;
4810880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4820880e062SHong Zhang         }
4830880e062SHong Zhang         else if (in[j] < 0) continue;
4840880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
485590ac198SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);}
4860880e062SHong Zhang #endif
4870880e062SHong Zhang         else {
4880880e062SHong Zhang           if (mat->was_assembled) {
4890880e062SHong Zhang             if (!baij->colmap) {
4900880e062SHong Zhang               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
4910880e062SHong Zhang             }
4920880e062SHong Zhang 
4930880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4940880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4950880e062SHong Zhang             { int data;
4960880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4970880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4980880e062SHong Zhang             }
4990880e062SHong Zhang #else
5000880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
5010880e062SHong Zhang #endif
5020880e062SHong Zhang #endif
5030880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
5040880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5050880e062SHong Zhang             col  = (col - 1)/bs;
5060880e062SHong Zhang #else
5070880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5080880e062SHong Zhang #endif
5090880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5100880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5110880e062SHong Zhang               col =  in[j];
5120880e062SHong Zhang             }
5130880e062SHong Zhang           }
5140880e062SHong Zhang           else col = in[j];
5150880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5160880e062SHong Zhang         }
5170880e062SHong Zhang       }
5180880e062SHong Zhang     } else {
5190880e062SHong Zhang       if (!baij->donotstash) {
5200880e062SHong Zhang         if (roworiented) {
5210880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5220880e062SHong Zhang         } else {
5230880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5240880e062SHong Zhang         }
5250880e062SHong Zhang       }
5260880e062SHong Zhang     }
5270880e062SHong Zhang   }
5280880e062SHong Zhang   PetscFunctionReturn(0);
529a30f8f8cSSatish Balay }
530a30f8f8cSSatish Balay 
531a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
532a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
533a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
534a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5354a2ae208SSatish Balay #undef __FUNCT__
5364a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
537f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
538a30f8f8cSSatish Balay {
539a30f8f8cSSatish Balay   PetscFunctionBegin;
54029bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54196e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
542a30f8f8cSSatish Balay }
543a30f8f8cSSatish Balay 
5444a2ae208SSatish Balay #undef __FUNCT__
5454a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
546f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
547a30f8f8cSSatish Balay {
548a30f8f8cSSatish Balay   PetscFunctionBegin;
54929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
55096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
551a30f8f8cSSatish Balay }
552a30f8f8cSSatish Balay 
5534a2ae208SSatish Balay #undef __FUNCT__
5544a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
555f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[])
556a30f8f8cSSatish Balay {
557f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
558a30f8f8cSSatish Balay   int          bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
559a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
560a30f8f8cSSatish Balay 
561a30f8f8cSSatish Balay   PetscFunctionBegin;
562a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
563590ac198SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]);
564590ac198SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1);
565a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
566a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
567a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
568590ac198SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]);
569590ac198SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1);
570a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
571a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
572c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
573a30f8f8cSSatish Balay         } else {
574a30f8f8cSSatish Balay           if (!baij->colmap) {
575a30f8f8cSSatish Balay             ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
576a30f8f8cSSatish Balay           }
577a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
578a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
579a30f8f8cSSatish Balay           data --;
580a30f8f8cSSatish Balay #else
581a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
582a30f8f8cSSatish Balay #endif
583a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
584a30f8f8cSSatish Balay           else {
585a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
586c8407628SSatish Balay             ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
587a30f8f8cSSatish Balay           }
588a30f8f8cSSatish Balay         }
589a30f8f8cSSatish Balay       }
590a30f8f8cSSatish Balay     } else {
59129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
592a30f8f8cSSatish Balay     }
593a30f8f8cSSatish Balay   }
594a30f8f8cSSatish Balay  PetscFunctionReturn(0);
595a30f8f8cSSatish Balay }
596a30f8f8cSSatish Balay 
5974a2ae208SSatish Balay #undef __FUNCT__
5984a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
599a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
600a30f8f8cSSatish Balay {
601a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
602bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
603bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
604a30f8f8cSSatish Balay   int        ierr;
605a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
606a30f8f8cSSatish Balay 
607a30f8f8cSSatish Balay   PetscFunctionBegin;
608a30f8f8cSSatish Balay   if (baij->size == 1) {
609a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
610a30f8f8cSSatish Balay   } else {
611a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
612f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
613a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
614a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
615a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
616a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
617a30f8f8cSSatish Balay       /*
61856faa61eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
61956faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
620a30f8f8cSSatish Balay       */
621d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       /*
62356faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
62456faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm); */
625a30f8f8cSSatish Balay 
626a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
627a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
628a30f8f8cSSatish Balay     } else {
62929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
630a30f8f8cSSatish Balay     }
631a30f8f8cSSatish Balay   }
632a30f8f8cSSatish Balay   PetscFunctionReturn(0);
633a30f8f8cSSatish Balay }
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay /*
636a30f8f8cSSatish Balay   Creates the hash table, and sets the table
637a30f8f8cSSatish Balay   This table is created only once.
638a30f8f8cSSatish Balay   If new entried need to be added to the matrix
639a30f8f8cSSatish Balay   then the hash table has to be destroyed and
640a30f8f8cSSatish Balay   recreated.
641a30f8f8cSSatish Balay */
6424a2ae208SSatish Balay #undef __FUNCT__
6434a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
644a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
645a30f8f8cSSatish Balay {
646a30f8f8cSSatish Balay   PetscFunctionBegin;
64729bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
64896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
649a30f8f8cSSatish Balay }
650a30f8f8cSSatish Balay 
6514a2ae208SSatish Balay #undef __FUNCT__
6524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
653a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
654a30f8f8cSSatish Balay {
655a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
656a30f8f8cSSatish Balay   int         ierr,nstash,reallocs;
657a30f8f8cSSatish Balay   InsertMode  addv;
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   PetscFunctionBegin;
660a30f8f8cSSatish Balay   if (baij->donotstash) {
661a30f8f8cSSatish Balay     PetscFunctionReturn(0);
662a30f8f8cSSatish Balay   }
663a30f8f8cSSatish Balay 
664a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
665a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
666a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
66729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
668a30f8f8cSSatish Balay   }
669a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
672a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
673a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
674b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
675a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
676b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
677a30f8f8cSSatish Balay   PetscFunctionReturn(0);
678a30f8f8cSSatish Balay }
679a30f8f8cSSatish Balay 
6804a2ae208SSatish Balay #undef __FUNCT__
6814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
682a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
683a30f8f8cSSatish Balay {
684a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
685a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
686a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
687a30f8f8cSSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
688a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
689a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
690a30f8f8cSSatish Balay   MatScalar   *val;
691a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
692a30f8f8cSSatish Balay 
693a30f8f8cSSatish Balay   PetscFunctionBegin;
694a30f8f8cSSatish Balay 
695a30f8f8cSSatish Balay   if (!baij->donotstash) {
696a30f8f8cSSatish Balay     while (1) {
697a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
698a30f8f8cSSatish Balay       /*
69956faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
70056faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm);
701a30f8f8cSSatish Balay       */
702a30f8f8cSSatish Balay       if (!flg) break;
703a30f8f8cSSatish Balay 
704a30f8f8cSSatish Balay       for (i=0; i<n;) {
705a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
706a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
707a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
708a30f8f8cSSatish Balay         else       ncols = n-i;
709a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
710a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
711a30f8f8cSSatish Balay         i = j;
712a30f8f8cSSatish Balay       }
713a30f8f8cSSatish Balay     }
714a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
716a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
717a30f8f8cSSatish Balay        restore the original flags */
718a30f8f8cSSatish Balay     r1 = baij->roworiented;
719a30f8f8cSSatish Balay     r2 = a->roworiented;
720a30f8f8cSSatish Balay     r3 = b->roworiented;
721a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
722a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
723a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
724a30f8f8cSSatish Balay     while (1) {
725a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
726a30f8f8cSSatish Balay       if (!flg) break;
727a30f8f8cSSatish Balay 
728a30f8f8cSSatish Balay       for (i=0; i<n;) {
729a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
730a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
731a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
732a30f8f8cSSatish Balay         else       ncols = n-i;
733a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
734a30f8f8cSSatish Balay         i = j;
735a30f8f8cSSatish Balay       }
736a30f8f8cSSatish Balay     }
737a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
738a30f8f8cSSatish Balay     baij->roworiented = r1;
739a30f8f8cSSatish Balay     a->roworiented    = r2;
740a30f8f8cSSatish Balay     b->roworiented    = r3;
741a30f8f8cSSatish Balay   }
742a30f8f8cSSatish Balay 
743a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
744a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
745a30f8f8cSSatish Balay 
746a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
747a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
748a30f8f8cSSatish Balay   /*
749a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
750a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
751a30f8f8cSSatish Balay   */
752a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
753a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
754a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
755c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
756a30f8f8cSSatish Balay     }
757a30f8f8cSSatish Balay   }
758a30f8f8cSSatish Balay 
759a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
76040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
761a30f8f8cSSatish Balay   }
762a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
763a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
764a30f8f8cSSatish Balay 
765a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
766a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
767f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
768a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
769a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
770a30f8f8cSSatish Balay   }
771a30f8f8cSSatish Balay #endif
772a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
773c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
775a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
776a30f8f8cSSatish Balay   }
777a30f8f8cSSatish Balay 
778a30f8f8cSSatish Balay   if (baij->rowvalues) {
779a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
780a30f8f8cSSatish Balay     baij->rowvalues = 0;
781a30f8f8cSSatish Balay   }
7825222a1afSHong Zhang 
783a30f8f8cSSatish Balay   PetscFunctionReturn(0);
784a30f8f8cSSatish Balay }
785a30f8f8cSSatish Balay 
7864a2ae208SSatish Balay #undef __FUNCT__
7874a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
788b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
789a30f8f8cSSatish Balay {
790a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
791fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
792a30f8f8cSSatish Balay   PetscTruth        isascii,isdraw;
793b0a32e0cSBarry Smith   PetscViewer       sviewer;
794f3ef73ceSBarry Smith   PetscViewerFormat format;
795a30f8f8cSSatish Balay 
796a30f8f8cSSatish Balay   PetscFunctionBegin;
797b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
798fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
799a30f8f8cSSatish Balay   if (isascii) {
800b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
801456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
802a30f8f8cSSatish Balay       MatInfo info;
803a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
804a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
805b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
806b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
807a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
808a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
809b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
810a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
811b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
812b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
813a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
814a30f8f8cSSatish Balay       PetscFunctionReturn(0);
815fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
816b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
817a30f8f8cSSatish Balay       PetscFunctionReturn(0);
818a30f8f8cSSatish Balay     }
819a30f8f8cSSatish Balay   }
820a30f8f8cSSatish Balay 
821a30f8f8cSSatish Balay   if (isdraw) {
822b0a32e0cSBarry Smith     PetscDraw       draw;
823a30f8f8cSSatish Balay     PetscTruth isnull;
824b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
825b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
826a30f8f8cSSatish Balay   }
827a30f8f8cSSatish Balay 
828a30f8f8cSSatish Balay   if (size == 1) {
829e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
830a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
831a30f8f8cSSatish Balay   } else {
832a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
833a30f8f8cSSatish Balay     Mat         A;
83465d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
83565d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
836b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
837a30f8f8cSSatish Balay     MatScalar   *a;
838a30f8f8cSSatish Balay 
839a30f8f8cSSatish Balay     if (!rank) {
840bc0ba53dSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
841a30f8f8cSSatish Balay     } else {
842f65c83cfSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
843a30f8f8cSSatish Balay     }
844b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
845a30f8f8cSSatish Balay 
846a30f8f8cSSatish Balay     /* copy over the A part */
84765d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
848a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
84982502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
850a30f8f8cSSatish Balay 
851a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
852a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
853a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
854a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
855a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
856a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
857a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
858a30f8f8cSSatish Balay           col++; a += bs;
859a30f8f8cSSatish Balay         }
860a30f8f8cSSatish Balay       }
861a30f8f8cSSatish Balay     }
862a30f8f8cSSatish Balay     /* copy over the B part */
86365d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
86465d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
865a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
866a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
867a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
868a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
869a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
870a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
871a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
872a30f8f8cSSatish Balay           col++; a += bs;
873a30f8f8cSSatish Balay         }
874a30f8f8cSSatish Balay       }
875a30f8f8cSSatish Balay     }
876a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
877a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
878a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
879a30f8f8cSSatish Balay     /*
880a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
881b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
882a30f8f8cSSatish Balay     */
883b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
88465d70643SHong Zhang     if (!rank) {
885e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
886a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
887a30f8f8cSSatish Balay     }
888b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
889a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
890a30f8f8cSSatish Balay   }
891a30f8f8cSSatish Balay   PetscFunctionReturn(0);
892a30f8f8cSSatish Balay }
893a30f8f8cSSatish Balay 
8944a2ae208SSatish Balay #undef __FUNCT__
8954a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
896b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
897a30f8f8cSSatish Balay {
898a30f8f8cSSatish Balay   int        ierr;
899a30f8f8cSSatish Balay   PetscTruth isascii,isdraw,issocket,isbinary;
900a30f8f8cSSatish Balay 
901a30f8f8cSSatish Balay   PetscFunctionBegin;
902b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
903fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
904b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
905fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
906a30f8f8cSSatish Balay   if (isascii || isdraw || issocket || isbinary) {
907a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
908a30f8f8cSSatish Balay   } else {
90929bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
910a30f8f8cSSatish Balay   }
911a30f8f8cSSatish Balay   PetscFunctionReturn(0);
912a30f8f8cSSatish Balay }
913a30f8f8cSSatish Balay 
9144a2ae208SSatish Balay #undef __FUNCT__
9154a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
916a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat)
917a30f8f8cSSatish Balay {
918a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
919a30f8f8cSSatish Balay   int         ierr;
920a30f8f8cSSatish Balay 
921a30f8f8cSSatish Balay   PetscFunctionBegin;
922a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
923b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
924a30f8f8cSSatish Balay #endif
925a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
926a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
927a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
928a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
929a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
930a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
931a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
932a30f8f8cSSatish Balay #else
933a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
934a30f8f8cSSatish Balay #endif
935a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
936a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
937a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
93840781036SHong Zhang   if (baij->slvec0) {
93940781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
94040781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
94140781036SHong Zhang   }
94240781036SHong Zhang   if (baij->slvec1) {
94340781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
94440781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
94540781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
94640781036SHong Zhang   }
94740781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
948a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
949a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
950a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
951a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
952a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
953a30f8f8cSSatish Balay #endif
954a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
955a30f8f8cSSatish Balay   PetscFunctionReturn(0);
956a30f8f8cSSatish Balay }
957a30f8f8cSSatish Balay 
9584a2ae208SSatish Balay #undef __FUNCT__
959a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
960a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
961a9d4b620SHong Zhang {
962a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
9634024bf32SHong Zhang   int         ierr,nt,mbs=a->mbs,bs=a->bs;
964a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
965a9d4b620SHong Zhang 
966a9d4b620SHong Zhang   PetscFunctionBegin;
967a9d4b620SHong Zhang   /*
96856faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," _1comm is called ...\n");
96956faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
970a9d4b620SHong Zhang   */
971a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
972a9d4b620SHong Zhang   if (nt != A->n) {
973a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
974a9d4b620SHong Zhang   }
975a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
976a9d4b620SHong Zhang   if (nt != A->m) {
977a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
978a9d4b620SHong Zhang   }
979a9d4b620SHong Zhang 
980a9d4b620SHong Zhang   /* diagonal part */
981a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
982a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
983a9d4b620SHong Zhang 
984a9d4b620SHong Zhang   /* subdiagonal part */
985a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
986a9d4b620SHong Zhang 
987a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
988a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
989a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
990a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
991a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
992a9d4b620SHong Zhang 
993a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
994a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
995a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
996a9d4b620SHong Zhang 
997a9d4b620SHong Zhang   /* supperdiagonal part */
998a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
999a9d4b620SHong Zhang 
1000a9d4b620SHong Zhang   PetscFunctionReturn(0);
1001a9d4b620SHong Zhang }
1002a9d4b620SHong Zhang 
1003a9d4b620SHong Zhang #undef __FUNCT__
100440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
100540781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1006a30f8f8cSSatish Balay {
1007a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1008a30f8f8cSSatish Balay   int         ierr,nt;
1009a30f8f8cSSatish Balay 
1010a30f8f8cSSatish Balay   PetscFunctionBegin;
1011a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1012b5df2d14SHong Zhang   if (nt != A->n) {
101329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1014a30f8f8cSSatish Balay   }
1015a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1016b5df2d14SHong Zhang   if (nt != A->m) {
101729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1018a30f8f8cSSatish Balay   }
101965d70643SHong Zhang 
1020b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1021b941877fSHong Zhang   /* do diagonal part */
1022b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1023b941877fSHong Zhang   /* do supperdiagonal part */
1024b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1025b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1026b941877fSHong Zhang   /* do subdiagonal part */
1027b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1028b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1029b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
103065d70643SHong Zhang 
1031a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1032a30f8f8cSSatish Balay }
1033a30f8f8cSSatish Balay 
10344a2ae208SSatish Balay #undef __FUNCT__
10354a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1036a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1037a30f8f8cSSatish Balay {
1038de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1039a9d4b620SHong Zhang   int          ierr,mbs=a->mbs,bs=a->bs;
1040a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
1041a9d4b620SHong Zhang 
1042a9d4b620SHong Zhang   PetscFunctionBegin;
1043a9d4b620SHong Zhang   /*
104456faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
104556faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1046a9d4b620SHong Zhang   */
1047a9d4b620SHong Zhang   /* diagonal part */
1048a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1049a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1050a9d4b620SHong Zhang 
1051a9d4b620SHong Zhang   /* subdiagonal part */
1052a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1053a9d4b620SHong Zhang 
1054a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
1055a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1056a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1057a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1058a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1059a9d4b620SHong Zhang 
1060a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1061a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1062a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1063a9d4b620SHong Zhang 
1064a9d4b620SHong Zhang   /* supperdiagonal part */
1065a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1066a9d4b620SHong Zhang 
1067a9d4b620SHong Zhang   PetscFunctionReturn(0);
1068a9d4b620SHong Zhang }
1069a9d4b620SHong Zhang 
1070a9d4b620SHong Zhang #undef __FUNCT__
1071a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1072a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1073a9d4b620SHong Zhang {
1074a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1075aa482183SHong Zhang   int        ierr;
1076a30f8f8cSSatish Balay 
1077a30f8f8cSSatish Balay   PetscFunctionBegin;
1078b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1079b941877fSHong Zhang   /* do diagonal part */
1080b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1081b941877fSHong Zhang   /* do supperdiagonal part */
1082b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1083de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1084de8b6608SHong Zhang 
1085b941877fSHong Zhang   /* do subdiagonal part */
1086a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1087a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1088a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1089aa482183SHong Zhang 
1090a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1091a30f8f8cSSatish Balay }
1092a30f8f8cSSatish Balay 
10934a2ae208SSatish Balay #undef __FUNCT__
10944a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1095a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1096a30f8f8cSSatish Balay {
1097a30f8f8cSSatish Balay   PetscFunctionBegin;
109829bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMult().");
109996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1100a30f8f8cSSatish Balay }
1101a30f8f8cSSatish Balay 
11024a2ae208SSatish Balay #undef __FUNCT__
11034a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1104a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1105a30f8f8cSSatish Balay {
1106a30f8f8cSSatish Balay   PetscFunctionBegin;
110729bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMultAdd().");
110896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1109a30f8f8cSSatish Balay }
1110a30f8f8cSSatish Balay 
1111a30f8f8cSSatish Balay /*
1112a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1113a30f8f8cSSatish Balay    diagonal block
1114a30f8f8cSSatish Balay */
11154a2ae208SSatish Balay #undef __FUNCT__
11164a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1117a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1118a30f8f8cSSatish Balay {
1119a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1120a30f8f8cSSatish Balay   int         ierr;
1121a30f8f8cSSatish Balay 
1122a30f8f8cSSatish Balay   PetscFunctionBegin;
112329bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1124a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1125a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1126a30f8f8cSSatish Balay }
1127a30f8f8cSSatish Balay 
11284a2ae208SSatish Balay #undef __FUNCT__
11294a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1130268466fbSBarry Smith int MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1131a30f8f8cSSatish Balay {
1132a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1133a30f8f8cSSatish Balay   int         ierr;
1134a30f8f8cSSatish Balay 
1135a30f8f8cSSatish Balay   PetscFunctionBegin;
1136a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1139a30f8f8cSSatish Balay }
1140a30f8f8cSSatish Balay 
11414a2ae208SSatish Balay #undef __FUNCT__
11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
114387828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1144a30f8f8cSSatish Balay {
1145a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
114687828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1147a30f8f8cSSatish Balay   int            bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1148a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1149a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1150a30f8f8cSSatish Balay 
1151a30f8f8cSSatish Balay   PetscFunctionBegin;
115229bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1153a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1154a30f8f8cSSatish Balay 
1155a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1156a30f8f8cSSatish Balay     /*
1157a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1158a30f8f8cSSatish Balay     */
1159a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1160a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1161a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1162a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1163a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1164a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1165a30f8f8cSSatish Balay     }
116687828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1168a30f8f8cSSatish Balay   }
1169a30f8f8cSSatish Balay 
117029bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1171a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1172a30f8f8cSSatish Balay 
1173a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1174a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1175a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1176a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1178a30f8f8cSSatish Balay   nztot = nzA + nzB;
1179a30f8f8cSSatish Balay 
1180a30f8f8cSSatish Balay   cmap  = mat->garray;
1181a30f8f8cSSatish Balay   if (v  || idx) {
1182a30f8f8cSSatish Balay     if (nztot) {
1183a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1184a30f8f8cSSatish Balay       int imark = -1;
1185a30f8f8cSSatish Balay       if (v) {
1186a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1187a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1188a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1189a30f8f8cSSatish Balay           else break;
1190a30f8f8cSSatish Balay         }
1191a30f8f8cSSatish Balay         imark = i;
1192a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1193a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1194a30f8f8cSSatish Balay       }
1195a30f8f8cSSatish Balay       if (idx) {
1196a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1197a30f8f8cSSatish Balay         if (imark > -1) {
1198a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1199a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1200a30f8f8cSSatish Balay           }
1201a30f8f8cSSatish Balay         } else {
1202a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1203a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1204a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1205a30f8f8cSSatish Balay             else break;
1206a30f8f8cSSatish Balay           }
1207a30f8f8cSSatish Balay           imark = i;
1208a30f8f8cSSatish Balay         }
1209a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1210a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1211a30f8f8cSSatish Balay       }
1212a30f8f8cSSatish Balay     } else {
1213a30f8f8cSSatish Balay       if (idx) *idx = 0;
1214a30f8f8cSSatish Balay       if (v)   *v   = 0;
1215a30f8f8cSSatish Balay     }
1216a30f8f8cSSatish Balay   }
1217a30f8f8cSSatish Balay   *nz = nztot;
1218a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1219a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1220a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1221a30f8f8cSSatish Balay }
1222a30f8f8cSSatish Balay 
12234a2ae208SSatish Balay #undef __FUNCT__
12244a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
122587828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1226a30f8f8cSSatish Balay {
1227a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1228a30f8f8cSSatish Balay 
1229a30f8f8cSSatish Balay   PetscFunctionBegin;
1230a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
123129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1232a30f8f8cSSatish Balay   }
1233a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1234a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1235a30f8f8cSSatish Balay }
1236a30f8f8cSSatish Balay 
12374a2ae208SSatish Balay #undef __FUNCT__
12384a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1239a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1240a30f8f8cSSatish Balay {
1241a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1242a30f8f8cSSatish Balay 
1243a30f8f8cSSatish Balay   PetscFunctionBegin;
1244a30f8f8cSSatish Balay   *bs = baij->bs;
1245a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1246a30f8f8cSSatish Balay }
1247a30f8f8cSSatish Balay 
12484a2ae208SSatish Balay #undef __FUNCT__
12494a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1250a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A)
1251a30f8f8cSSatish Balay {
1252a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1253a30f8f8cSSatish Balay   int         ierr;
1254a30f8f8cSSatish Balay 
1255a30f8f8cSSatish Balay   PetscFunctionBegin;
1256a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1257a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1258a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1259a30f8f8cSSatish Balay }
1260a30f8f8cSSatish Balay 
12614a2ae208SSatish Balay #undef __FUNCT__
12624a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1263a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1264a30f8f8cSSatish Balay {
1265a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1266a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1267a30f8f8cSSatish Balay   int         ierr;
1268a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1269a30f8f8cSSatish Balay 
1270a30f8f8cSSatish Balay   PetscFunctionBegin;
1271f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1272a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1273a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1274a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1275a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1276a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1277a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1278a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1279a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1280a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1281a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1282a30f8f8cSSatish Balay     info->memory       = isend[3];
1283a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1284a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1285d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1286a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1287a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1288a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1289a30f8f8cSSatish Balay     info->memory       = irecv[3];
1290a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1291a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1292d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1293a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1294a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1295a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1296a30f8f8cSSatish Balay     info->memory       = irecv[3];
1297a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1298a30f8f8cSSatish Balay   } else {
129929bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1300a30f8f8cSSatish Balay   }
1301f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1302f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1303f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1304f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1305a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1306a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1307a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1308a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1309a30f8f8cSSatish Balay }
1310a30f8f8cSSatish Balay 
13114a2ae208SSatish Balay #undef __FUNCT__
13124a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1313a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op)
1314a30f8f8cSSatish Balay {
1315a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1316a30f8f8cSSatish Balay   int         ierr;
1317a30f8f8cSSatish Balay 
1318a30f8f8cSSatish Balay   PetscFunctionBegin;
1319e98b92d7SKris Buschelman   switch (op) {
1320e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1321e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1322e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1323e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1324e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1325e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1326e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1327a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1328a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1329e98b92d7SKris Buschelman     break;
1330e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1331a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1332a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1333a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1334e98b92d7SKris Buschelman     break;
1335e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1336e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1337e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1338b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1339e98b92d7SKris Buschelman     break;
1340e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1341a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1342a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1343a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1344e98b92d7SKris Buschelman     break;
1345e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1346a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1347e98b92d7SKris Buschelman     break;
1348e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
134929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1350e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1351a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1352e98b92d7SKris Buschelman     break;
1353e98b92d7SKris Buschelman   default:
135429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1355a30f8f8cSSatish Balay   }
1356a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1357a30f8f8cSSatish Balay }
1358a30f8f8cSSatish Balay 
13594a2ae208SSatish Balay #undef __FUNCT__
13608115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
13618115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B)
1362a30f8f8cSSatish Balay {
13638115998fSBarry Smith   int ierr;
1364a30f8f8cSSatish Balay   PetscFunctionBegin;
1365999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13668115998fSBarry Smith   PetscFunctionReturn(0);
1367a30f8f8cSSatish Balay }
1368a30f8f8cSSatish Balay 
13694a2ae208SSatish Balay #undef __FUNCT__
13704a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1371a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1372a30f8f8cSSatish Balay {
1373a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1374a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1375a30f8f8cSSatish Balay   int         ierr,s1,s2,s3;
1376a30f8f8cSSatish Balay 
1377a30f8f8cSSatish Balay   PetscFunctionBegin;
1378a30f8f8cSSatish Balay   if (ll != rr) {
137929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1380a30f8f8cSSatish Balay   }
1381a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1382a30f8f8cSSatish Balay   if (rr) {
1383a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
138429bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1385a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1386a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1387a30f8f8cSSatish Balay     /*} if (ll) { */
1388a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
138929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1390a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1391a30f8f8cSSatish Balay     /* } */
1392a30f8f8cSSatish Balay   /* scale  the diagonal block */
1393a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1394a30f8f8cSSatish Balay 
1395a30f8f8cSSatish Balay   /* if (rr) { */
1396a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1397a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1398a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1399a30f8f8cSSatish Balay   }
1400a30f8f8cSSatish Balay 
1401a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1402a30f8f8cSSatish Balay }
1403a30f8f8cSSatish Balay 
14044a2ae208SSatish Balay #undef __FUNCT__
14054a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
1406268466fbSBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag)
1407a30f8f8cSSatish Balay {
1408a30f8f8cSSatish Balay   PetscFunctionBegin;
1409c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1410a30f8f8cSSatish Balay }
1411a30f8f8cSSatish Balay 
14124a2ae208SSatish Balay #undef __FUNCT__
14134a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1414a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A)
1415a30f8f8cSSatish Balay {
1416a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1417a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1418a30f8f8cSSatish Balay   static int  called = 0;
1419a30f8f8cSSatish Balay   int         ierr;
1420a30f8f8cSSatish Balay 
1421a30f8f8cSSatish Balay   PetscFunctionBegin;
1422a30f8f8cSSatish Balay   if (!a->rank) {
1423a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1424a30f8f8cSSatish Balay   }
1425a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1426a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1427a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1428a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1429a30f8f8cSSatish Balay }
1430a30f8f8cSSatish Balay 
14314a2ae208SSatish Balay #undef __FUNCT__
14324a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1433a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A)
1434a30f8f8cSSatish Balay {
1435f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1436a30f8f8cSSatish Balay   int         ierr;
1437a30f8f8cSSatish Balay 
1438a30f8f8cSSatish Balay   PetscFunctionBegin;
1439a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1440a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1441a30f8f8cSSatish Balay }
1442a30f8f8cSSatish Balay 
1443a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1444a30f8f8cSSatish Balay 
14454a2ae208SSatish Balay #undef __FUNCT__
14464a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1447a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1448a30f8f8cSSatish Balay {
1449a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1450a30f8f8cSSatish Balay   Mat         a,b,c,d;
1451a30f8f8cSSatish Balay   PetscTruth  flg;
1452a30f8f8cSSatish Balay   int         ierr;
1453a30f8f8cSSatish Balay 
1454a30f8f8cSSatish Balay   PetscFunctionBegin;
1455a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1456a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1457a30f8f8cSSatish Balay 
1458a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1459a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1460a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1461a30f8f8cSSatish Balay   }
1462a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1463a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1464a30f8f8cSSatish Balay }
1465a30f8f8cSSatish Balay 
14664a2ae208SSatish Balay #undef __FUNCT__
14674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1468273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A)
1469273d9f13SBarry Smith {
1470273d9f13SBarry Smith   int        ierr;
1471273d9f13SBarry Smith 
1472273d9f13SBarry Smith   PetscFunctionBegin;
1473273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1474273d9f13SBarry Smith   PetscFunctionReturn(0);
1475273d9f13SBarry Smith }
1476a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1477a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1478a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1479a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1480a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1481a9d4b620SHong Zhang        MatMult_MPISBAIJ,
148297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1483a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1484a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1485a30f8f8cSSatish Balay        0,
1486a30f8f8cSSatish Balay        0,
1487a30f8f8cSSatish Balay        0,
148897304618SKris Buschelman /*10*/ 0,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
14912798e883SHong Zhang        MatRelax_MPISBAIJ,
1492a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
149397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1494a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1495a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1496a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1497a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
149897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1499a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1500a30f8f8cSSatish Balay        0,
1501a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1502a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
150397304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        0,
1506a30f8f8cSSatish Balay        0,
1507a30f8f8cSSatish Balay        0,
150897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1509b5df2d14SHong Zhang        0,
1510a30f8f8cSSatish Balay        0,
1511a30f8f8cSSatish Balay        0,
1512a30f8f8cSSatish Balay        0,
151397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1514a30f8f8cSSatish Balay        0,
1515a30f8f8cSSatish Balay        0,
1516a30f8f8cSSatish Balay        0,
1517a30f8f8cSSatish Balay        0,
151897304618SKris Buschelman /*40*/ 0,
15190b15b8e2SSatish Balay        0,
15200b15b8e2SSatish Balay        0,
1521a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1522a30f8f8cSSatish Balay        0,
152397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1524a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1525a30f8f8cSSatish Balay        0,
1526a30f8f8cSSatish Balay        0,
1527a30f8f8cSSatish Balay        0,
152897304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ,
1529a30f8f8cSSatish Balay        0,
1530a30f8f8cSSatish Balay        0,
1531a30f8f8cSSatish Balay        0,
1532a30f8f8cSSatish Balay        0,
153397304618SKris Buschelman /*55*/ 0,
1534a30f8f8cSSatish Balay        0,
1535a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1536a30f8f8cSSatish Balay        0,
1537a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
153897304618SKris Buschelman /*60*/ 0,
1539a30f8f8cSSatish Balay        0,
1540a30f8f8cSSatish Balay        0,
15418a124369SBarry Smith        MatGetPetscMaps_Petsc,
154224d5174aSHong Zhang        0,
154397304618SKris Buschelman /*65*/ 0,
154424d5174aSHong Zhang        0,
154524d5174aSHong Zhang        0,
154624d5174aSHong Zhang        0,
154724d5174aSHong Zhang        0,
154897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
154924d5174aSHong Zhang        0,
155097304618SKris Buschelman        0,
155197304618SKris Buschelman        0,
155297304618SKris Buschelman        0,
155397304618SKris Buschelman /*75*/ 0,
155497304618SKris Buschelman        0,
155597304618SKris Buschelman        0,
155697304618SKris Buschelman        0,
155797304618SKris Buschelman        0,
155897304618SKris Buschelman /*80*/ 0,
155997304618SKris Buschelman        0,
156097304618SKris Buschelman        0,
156197304618SKris Buschelman        0,
156297304618SKris Buschelman        0,
156397304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ
156497304618SKris Buschelman };
1565a30f8f8cSSatish Balay 
1566a30f8f8cSSatish Balay 
1567a30f8f8cSSatish Balay EXTERN_C_BEGIN
15684a2ae208SSatish Balay #undef __FUNCT__
15694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1570a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1571a30f8f8cSSatish Balay {
1572a30f8f8cSSatish Balay   PetscFunctionBegin;
1573a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1574a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1575a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1576a30f8f8cSSatish Balay }
1577a30f8f8cSSatish Balay EXTERN_C_END
1578a30f8f8cSSatish Balay 
1579273d9f13SBarry Smith EXTERN_C_BEGIN
15804a2ae208SSatish Balay #undef __FUNCT__
1581a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1582a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1583a23d5eceSKris Buschelman {
1584a23d5eceSKris Buschelman   Mat_MPISBAIJ *b;
1585a23d5eceSKris Buschelman   int          ierr,i,mbs,Mbs;
1586a23d5eceSKris Buschelman 
1587a23d5eceSKris Buschelman   PetscFunctionBegin;
1588a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1589a23d5eceSKris Buschelman 
1590a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1591a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1592a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1593a23d5eceSKris Buschelman   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1594a23d5eceSKris Buschelman   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1595a23d5eceSKris Buschelman   if (d_nnz) {
1596a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1597a23d5eceSKris Buschelman       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1598a23d5eceSKris Buschelman     }
1599a23d5eceSKris Buschelman   }
1600a23d5eceSKris Buschelman   if (o_nnz) {
1601a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1602a23d5eceSKris Buschelman       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1603a23d5eceSKris Buschelman     }
1604a23d5eceSKris Buschelman   }
1605a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1606a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1607a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1608a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1609a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1610a23d5eceSKris Buschelman 
1611a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1612a23d5eceSKris Buschelman   mbs = B->m/bs;
1613a23d5eceSKris Buschelman   Mbs = B->M/bs;
1614a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
1615a23d5eceSKris Buschelman     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1616a23d5eceSKris Buschelman   }
1617a23d5eceSKris Buschelman 
1618a23d5eceSKris Buschelman   b->bs  = bs;
1619a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1620a23d5eceSKris Buschelman   b->mbs = mbs;
1621a23d5eceSKris Buschelman   b->nbs = mbs;
1622a23d5eceSKris Buschelman   b->Mbs = Mbs;
1623a23d5eceSKris Buschelman   b->Nbs = Mbs;
1624a23d5eceSKris Buschelman 
1625a23d5eceSKris Buschelman   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1626a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1627a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1628a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1629a23d5eceSKris Buschelman   }
1630a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1631a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1632a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1633a23d5eceSKris Buschelman   b->cend      = b->rend;
1634a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1635a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1636a23d5eceSKris Buschelman   }
1637a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1638a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1639a23d5eceSKris Buschelman 
1640a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1641a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1642a23d5eceSKris Buschelman 
1643a23d5eceSKris Buschelman 
1644a23d5eceSKris Buschelman   ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
1645a23d5eceSKris Buschelman   PetscLogObjectParent(B,b->A);
1646a23d5eceSKris Buschelman   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
1647a23d5eceSKris Buschelman   PetscLogObjectParent(B,b->B);
1648a23d5eceSKris Buschelman 
1649a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1650a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1651a23d5eceSKris Buschelman 
1652a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1653a23d5eceSKris Buschelman }
1654a23d5eceSKris Buschelman EXTERN_C_END
1655a23d5eceSKris Buschelman 
16560bad9183SKris Buschelman /*MC
1657fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16580bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16590bad9183SKris Buschelman 
16600bad9183SKris Buschelman    Options Database Keys:
16610bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16620bad9183SKris Buschelman 
16630bad9183SKris Buschelman   Level: beginner
16640bad9183SKris Buschelman 
16650bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16660bad9183SKris Buschelman M*/
16670bad9183SKris Buschelman 
1668a23d5eceSKris Buschelman EXTERN_C_BEGIN
1669a23d5eceSKris Buschelman #undef __FUNCT__
16704a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1671b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B)
1672b5df2d14SHong Zhang {
1673b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1674ca54ac64SHong Zhang   int          ierr;
1675b5df2d14SHong Zhang   PetscTruth   flg;
1676b5df2d14SHong Zhang 
1677b5df2d14SHong Zhang   PetscFunctionBegin;
1678b5df2d14SHong Zhang 
1679b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1680b0a32e0cSBarry Smith   B->data = (void*)b;
1681b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1682b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1683b5df2d14SHong Zhang 
1684b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1685b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1686b5df2d14SHong Zhang   B->mapping    = 0;
1687b5df2d14SHong Zhang   B->factor     = 0;
1688b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1689b5df2d14SHong Zhang 
1690b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1691b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1692b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1693b5df2d14SHong Zhang 
1694b5df2d14SHong Zhang   /* build local table of row and column ownerships */
169582502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1696273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1697273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1698b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1699b5df2d14SHong Zhang 
1700b5df2d14SHong Zhang   /* build cache for off array entries formed */
1701b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1702b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1703b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1704b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1705b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1706b5df2d14SHong Zhang 
1707f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1708b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
170964a35ccbSBarry Smith   b->setvalueslen     = 0;
1710b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1711b5df2d14SHong Zhang #endif
1712b5df2d14SHong Zhang 
1713b5df2d14SHong Zhang   /* stuff used in block assembly */
1714b5df2d14SHong Zhang   b->barray       = 0;
1715b5df2d14SHong Zhang 
1716b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1717b5df2d14SHong Zhang   b->lvec         = 0;
1718b5df2d14SHong Zhang   b->Mvctx        = 0;
171940781036SHong Zhang   b->slvec0       = 0;
172040781036SHong Zhang   b->slvec0b      = 0;
172140781036SHong Zhang   b->slvec1       = 0;
172240781036SHong Zhang   b->slvec1a      = 0;
172340781036SHong Zhang   b->slvec1b      = 0;
172440781036SHong Zhang   b->sMvctx       = 0;
1725b5df2d14SHong Zhang 
1726b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1727b5df2d14SHong Zhang   b->rowindices   = 0;
1728b5df2d14SHong Zhang   b->rowvalues    = 0;
1729b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1730b5df2d14SHong Zhang 
1731b5df2d14SHong Zhang   /* hash table stuff */
1732b5df2d14SHong Zhang   b->ht           = 0;
1733b5df2d14SHong Zhang   b->hd           = 0;
1734b5df2d14SHong Zhang   b->ht_size      = 0;
1735b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1736b5df2d14SHong Zhang   b->ht_fact      = 0;
1737b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1738b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1739b5df2d14SHong Zhang 
1740e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1741b5df2d14SHong Zhang   if (flg) {
1742f6275e2eSBarry Smith     PetscReal fact = 1.39;
1743b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1744e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1745b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1746b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1747b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1748b5df2d14SHong Zhang   }
1749b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1750b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1751b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1752b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1753b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1754b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1755b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1756b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1757b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1758a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1759a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1760a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1761b5df2d14SHong Zhang   PetscFunctionReturn(0);
1762b5df2d14SHong Zhang }
1763273d9f13SBarry Smith EXTERN_C_END
1764b5df2d14SHong Zhang 
1765209238afSKris Buschelman /*MC
1766002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1767209238afSKris Buschelman 
1768209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1769209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1770209238afSKris Buschelman 
1771209238afSKris Buschelman    Options Database Keys:
1772209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1773209238afSKris Buschelman 
1774209238afSKris Buschelman   Level: beginner
1775209238afSKris Buschelman 
1776209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1777209238afSKris Buschelman M*/
1778209238afSKris Buschelman 
1779209238afSKris Buschelman EXTERN_C_BEGIN
1780209238afSKris Buschelman #undef __FUNCT__
1781209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1782209238afSKris Buschelman int MatCreate_SBAIJ(Mat A) {
1783209238afSKris Buschelman   int ierr,size;
1784209238afSKris Buschelman 
1785209238afSKris Buschelman   PetscFunctionBegin;
1786209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1787209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1788209238afSKris Buschelman   if (size == 1) {
1789209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1790209238afSKris Buschelman   } else {
1791209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1792209238afSKris Buschelman   }
1793209238afSKris Buschelman   PetscFunctionReturn(0);
1794209238afSKris Buschelman }
1795209238afSKris Buschelman EXTERN_C_END
1796209238afSKris Buschelman 
17974a2ae208SSatish Balay #undef __FUNCT__
17984a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1799b5df2d14SHong Zhang /*@C
1800b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1801b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1802b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1803b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1804b5df2d14SHong Zhang 
1805b5df2d14SHong Zhang    Collective on Mat
1806b5df2d14SHong Zhang 
1807b5df2d14SHong Zhang    Input Parameters:
1808b5df2d14SHong Zhang +  A - the matrix
1809b5df2d14SHong Zhang .  bs   - size of blockk
1810b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1811b5df2d14SHong Zhang            submatrix  (same for all local rows)
1812b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18136d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18146d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18156d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1816b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1817b5df2d14SHong Zhang            submatrix (same for all local rows).
1818b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1819b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1820b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1821b5df2d14SHong Zhang 
1822b5df2d14SHong Zhang 
1823b5df2d14SHong Zhang    Options Database Keys:
1824b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1825b5df2d14SHong Zhang                      block calculations (much slower)
1826b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1827b5df2d14SHong Zhang 
1828b5df2d14SHong Zhang    Notes:
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1831b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1832b5df2d14SHong Zhang 
1833b5df2d14SHong Zhang    Storage Information:
1834b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1835b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1836b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1837b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1838b5df2d14SHong Zhang 
1839b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1840b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1841b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1842b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1843b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1846b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang .vb
1849b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1850b5df2d14SHong Zhang           -------------------
1851b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1852b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1853b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1854b5df2d14SHong Zhang           -------------------
1855b5df2d14SHong Zhang .ve
1856b5df2d14SHong Zhang 
1857b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1858b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18596d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18606d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1861b5df2d14SHong Zhang 
18626d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18636d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1864b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1865b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1866b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1867b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1868b5df2d14SHong Zhang    matrices.
1869b5df2d14SHong Zhang 
1870b5df2d14SHong Zhang    Level: intermediate
1871b5df2d14SHong Zhang 
1872b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1873b5df2d14SHong Zhang 
1874b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1875b5df2d14SHong Zhang @*/
1876ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[])
1877b5df2d14SHong Zhang {
1878ca01db9bSBarry Smith   int ierr,(*f)(Mat,int,int,const int[],int,const int[]);
1879b5df2d14SHong Zhang 
1880b5df2d14SHong Zhang   PetscFunctionBegin;
1881a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1882a23d5eceSKris Buschelman   if (f) {
1883a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1884b5df2d14SHong Zhang   }
1885b5df2d14SHong Zhang   PetscFunctionReturn(0);
1886b5df2d14SHong Zhang }
1887b5df2d14SHong Zhang 
18884a2ae208SSatish Balay #undef __FUNCT__
18894a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1890a30f8f8cSSatish Balay /*@C
1891a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1892a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1893a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1894a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1895a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1896a30f8f8cSSatish Balay 
1897a30f8f8cSSatish Balay    Collective on MPI_Comm
1898a30f8f8cSSatish Balay 
1899a30f8f8cSSatish Balay    Input Parameters:
1900a30f8f8cSSatish Balay +  comm - MPI communicator
1901a30f8f8cSSatish Balay .  bs   - size of blockk
1902a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1903a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1904a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1905a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1906a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1907a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1908a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1909a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1910a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1911a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1912a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19136d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19146d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19156d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1916a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1917a30f8f8cSSatish Balay            submatrix (same for all local rows).
1918a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1919a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1920a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1921a30f8f8cSSatish Balay 
1922a30f8f8cSSatish Balay    Output Parameter:
1923a30f8f8cSSatish Balay .  A - the matrix
1924a30f8f8cSSatish Balay 
1925a30f8f8cSSatish Balay    Options Database Keys:
1926a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1927a30f8f8cSSatish Balay                      block calculations (much slower)
1928a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1929a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1930a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1931a30f8f8cSSatish Balay 
1932a30f8f8cSSatish Balay    Notes:
1933a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1934a30f8f8cSSatish Balay    (possibly both).
1935a30f8f8cSSatish Balay 
1936a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1937a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay    Storage Information:
1940a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1941a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1942a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1943a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1944a30f8f8cSSatish Balay 
1945a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1946a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1947a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1948a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1949a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1950a30f8f8cSSatish Balay 
1951a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1952a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1953a30f8f8cSSatish Balay 
1954a30f8f8cSSatish Balay .vb
1955a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1956a30f8f8cSSatish Balay           -------------------
1957a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1958a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1959a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1960a30f8f8cSSatish Balay           -------------------
1961a30f8f8cSSatish Balay .ve
1962a30f8f8cSSatish Balay 
1963a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1964a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19656d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19666d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1967a30f8f8cSSatish Balay 
19686d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19696d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1970a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1971a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1972a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1973a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1974a30f8f8cSSatish Balay    matrices.
1975a30f8f8cSSatish Balay 
1976a30f8f8cSSatish Balay    Level: intermediate
1977a30f8f8cSSatish Balay 
1978a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1979a30f8f8cSSatish Balay 
1980a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1981a30f8f8cSSatish Balay @*/
1982a30f8f8cSSatish Balay 
1983ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A)
1984a30f8f8cSSatish Balay {
1985273d9f13SBarry Smith   int ierr,size;
1986a30f8f8cSSatish Balay 
1987a30f8f8cSSatish Balay   PetscFunctionBegin;
1988b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1989273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1990273d9f13SBarry Smith   if (size > 1) {
1991b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1992b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1993273d9f13SBarry Smith   } else {
1994273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1995273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1996273d9f13SBarry Smith   }
1997a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1998a30f8f8cSSatish Balay }
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay 
20014a2ae208SSatish Balay #undef __FUNCT__
20024a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
2003a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2004a30f8f8cSSatish Balay {
2005a30f8f8cSSatish Balay   Mat          mat;
2006a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2007a30f8f8cSSatish Balay   int          ierr,len=0;
2008a30f8f8cSSatish Balay 
2009a30f8f8cSSatish Balay   PetscFunctionBegin;
2010a30f8f8cSSatish Balay   *newmat       = 0;
2011b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2012b5df2d14SHong Zhang   ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr);
2013273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
2014b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2015a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
2016a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2017a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2018a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2019a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2020a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2021a30f8f8cSSatish Balay 
2022a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
2023a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
2024a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
2025a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
2026a30f8f8cSSatish Balay   a->size         = oldmat->size;
2027a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2028a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2029a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2030a30f8f8cSSatish Balay   a->rowindices   = 0;
2031a30f8f8cSSatish Balay   a->rowvalues    = 0;
2032a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2033a30f8f8cSSatish Balay   a->barray       = 0;
2034a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
2035a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
2036a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
2037a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
2038a30f8f8cSSatish Balay 
2039a30f8f8cSSatish Balay   /* hash table stuff */
2040a30f8f8cSSatish Balay   a->ht           = 0;
2041a30f8f8cSSatish Balay   a->hd           = 0;
2042a30f8f8cSSatish Balay   a->ht_size      = 0;
2043a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2044a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2045a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2046a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2047a30f8f8cSSatish Balay 
204882502324SSatish Balay   ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr);
2049b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
2050a30f8f8cSSatish Balay   a->cowners    = a->rowners + a->size + 2;
2051a30f8f8cSSatish Balay   a->rowners_bs = a->cowners + a->size + 2;
2052a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
2053a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2054a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2055a30f8f8cSSatish Balay   if (oldmat->colmap) {
2056a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2057a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2058a30f8f8cSSatish Balay #else
205982502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2060b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2061a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2062a30f8f8cSSatish Balay #endif
2063a30f8f8cSSatish Balay   } else a->colmap = 0;
2064a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
206582502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2066b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2067a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2068a30f8f8cSSatish Balay   } else a->garray = 0;
2069a30f8f8cSSatish Balay 
2070a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2071b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2072a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2073a30f8f8cSSatish Balay 
2074b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
2075a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2076b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2077a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2078b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2079b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2080a30f8f8cSSatish Balay   *newmat = mat;
2081a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2082a30f8f8cSSatish Balay }
2083a30f8f8cSSatish Balay 
2084a30f8f8cSSatish Balay #include "petscsys.h"
2085a30f8f8cSSatish Balay 
20864a2ae208SSatish Balay #undef __FUNCT__
20874a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2088b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
2089a30f8f8cSSatish Balay {
2090a30f8f8cSSatish Balay   Mat          A;
2091a30f8f8cSSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
209287828ca2SBarry Smith   PetscScalar  *vals,*buf;
2093a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2094a30f8f8cSSatish Balay   MPI_Status   status;
2095a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2096a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2097a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2098a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2099a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
2100a30f8f8cSSatish Balay 
2101a30f8f8cSSatish Balay   PetscFunctionBegin;
2102b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay 
2104a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2105a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2106a30f8f8cSSatish Balay   if (!rank) {
2107b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2108a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2109552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2110a30f8f8cSSatish Balay     if (header[3] < 0) {
211129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2112a30f8f8cSSatish Balay     }
2113a30f8f8cSSatish Balay   }
2114a30f8f8cSSatish Balay 
2115a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2116a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2117a30f8f8cSSatish Balay 
211829bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2119a30f8f8cSSatish Balay 
2120a30f8f8cSSatish Balay   /*
2121a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2122a30f8f8cSSatish Balay      divisible by the blocksize
2123a30f8f8cSSatish Balay   */
2124a30f8f8cSSatish Balay   Mbs        = M/bs;
2125a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2126a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2127a30f8f8cSSatish Balay   else                  Mbs++;
2128a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2129b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2130a30f8f8cSSatish Balay   }
2131a30f8f8cSSatish Balay 
2132a30f8f8cSSatish Balay   /* determine ownership of all rows */
2133a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2134a30f8f8cSSatish Balay   m          = mbs*bs;
2135b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2136a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2137a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2138a30f8f8cSSatish Balay   rowners[0] = 0;
2139a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2140a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2141a30f8f8cSSatish Balay   rstart = rowners[rank];
2142a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2143a30f8f8cSSatish Balay 
2144a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
214582502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2146a30f8f8cSSatish Balay   if (!rank) {
2147b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2149a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
215082502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2152a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2153a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2154a30f8f8cSSatish Balay   } else {
2155a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2156a30f8f8cSSatish Balay   }
2157a30f8f8cSSatish Balay 
21580222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2159a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
216082502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2162a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2163a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2164a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2165a30f8f8cSSatish Balay       }
2166a30f8f8cSSatish Balay     }
2167a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2168a30f8f8cSSatish Balay 
2169a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2170a30f8f8cSSatish Balay     maxnz = 0;
2171a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2172a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2173a30f8f8cSSatish Balay     }
217482502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2175a30f8f8cSSatish Balay 
2176a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2177a30f8f8cSSatish Balay     nz     = procsnz[0];
217882502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay     mycols = ibuf;
2180a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2181a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2183a30f8f8cSSatish Balay 
2184a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2185a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2186a30f8f8cSSatish Balay       nz   = procsnz[i];
2187a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay     }
2190a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2191a30f8f8cSSatish Balay     if (size != 1) {
2192a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2193a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2194a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2195a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2196a30f8f8cSSatish Balay     }
2197a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21980222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2199a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2200a30f8f8cSSatish Balay     nz = 0;
2201a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2202a30f8f8cSSatish Balay       nz += locrowlens[i];
2203a30f8f8cSSatish Balay     }
220482502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay     mycols = ibuf;
2206a30f8f8cSSatish Balay     /* receive message of column indices*/
2207a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
220929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2210a30f8f8cSSatish Balay   }
2211a30f8f8cSSatish Balay 
2212a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
221382502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2214a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
221582502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2216a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2217a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2218a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2219a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2220a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2221a30f8f8cSSatish Balay     dcount  = 0;
2222a30f8f8cSSatish Balay     odcount = 0;
2223a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2224a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2225a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22260222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2227a30f8f8cSSatish Balay         if (!mask[tmp]) {
2228a30f8f8cSSatish Balay           mask[tmp] = 1;
22290222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22300222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2231a30f8f8cSSatish Balay         }
2232a30f8f8cSSatish Balay       }
2233a30f8f8cSSatish Balay       rowcount++;
2234a30f8f8cSSatish Balay     }
2235a30f8f8cSSatish Balay 
22360222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22370222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2238a30f8f8cSSatish Balay 
2239a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2240a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2241a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2242a30f8f8cSSatish Balay   }
2243a30f8f8cSSatish Balay 
2244a30f8f8cSSatish Balay   /* create our matrix */
224522191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
224622191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
224722191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2248273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay 
2250a30f8f8cSSatish Balay   if (!rank) {
225187828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2252a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2253a30f8f8cSSatish Balay     nz = procsnz[0];
2254a30f8f8cSSatish Balay     vals = buf;
2255a30f8f8cSSatish Balay     mycols = ibuf;
2256a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2257a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2259a30f8f8cSSatish Balay 
2260a30f8f8cSSatish Balay     /* insert into matrix */
2261a30f8f8cSSatish Balay     jj      = rstart*bs;
2262a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22637e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2264a30f8f8cSSatish Balay       mycols += locrowlens[i];
2265a30f8f8cSSatish Balay       vals   += locrowlens[i];
2266a30f8f8cSSatish Balay       jj++;
2267a30f8f8cSSatish Balay     }
22687e06b45fSHong Zhang 
2269a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2270a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2271a30f8f8cSSatish Balay       nz   = procsnz[i];
2272a30f8f8cSSatish Balay       vals = buf;
2273a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2274a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2275a30f8f8cSSatish Balay     }
2276a30f8f8cSSatish Balay     /* the last proc */
2277a30f8f8cSSatish Balay     if (size != 1){
2278a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2279a30f8f8cSSatish Balay       vals = buf;
2280a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2281a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2282a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2283a30f8f8cSSatish Balay     }
2284a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22857e06b45fSHong Zhang 
2286a30f8f8cSSatish Balay   } else {
2287a30f8f8cSSatish Balay     /* receive numeric values */
228887828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2289a30f8f8cSSatish Balay 
2290a30f8f8cSSatish Balay     /* receive message of values*/
2291a30f8f8cSSatish Balay     vals   = buf;
2292a30f8f8cSSatish Balay     mycols = ibuf;
2293a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2294a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
229529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2296a30f8f8cSSatish Balay 
2297a30f8f8cSSatish Balay     /* insert into matrix */
2298a30f8f8cSSatish Balay     jj      = rstart*bs;
2299a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2300a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2301a30f8f8cSSatish Balay       mycols += locrowlens[i];
2302a30f8f8cSSatish Balay       vals   += locrowlens[i];
2303a30f8f8cSSatish Balay       jj++;
2304a30f8f8cSSatish Balay     }
2305a30f8f8cSSatish Balay   }
23067e06b45fSHong Zhang 
2307a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2308a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2309a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2310a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2311a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2312a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2313a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2314a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
231522191285SKris Buschelman   *newmat = A;
2316a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2317a30f8f8cSSatish Balay }
2318a30f8f8cSSatish Balay 
23194a2ae208SSatish Balay #undef __FUNCT__
23204a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2321a30f8f8cSSatish Balay /*@
2322a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2323a30f8f8cSSatish Balay 
2324a30f8f8cSSatish Balay    Input Parameters:
2325a30f8f8cSSatish Balay .  mat  - the matrix
2326a30f8f8cSSatish Balay .  fact - factor
2327a30f8f8cSSatish Balay 
2328a30f8f8cSSatish Balay    Collective on Mat
2329a30f8f8cSSatish Balay 
2330a30f8f8cSSatish Balay    Level: advanced
2331a30f8f8cSSatish Balay 
2332a30f8f8cSSatish Balay   Notes:
2333a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2334a30f8f8cSSatish Balay 
2335a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2336a30f8f8cSSatish Balay 
2337a30f8f8cSSatish Balay .seealso: MatSetOption()
2338a30f8f8cSSatish Balay @*/
2339a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2340a30f8f8cSSatish Balay {
2341a30f8f8cSSatish Balay   PetscFunctionBegin;
234229bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
234396e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2344a30f8f8cSSatish Balay }
234524d5174aSHong Zhang 
23464a2ae208SSatish Balay #undef __FUNCT__
23474a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
234824d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v)
234924d5174aSHong Zhang {
235024d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2351f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2352ca54ac64SHong Zhang   PetscReal    atmp;
235387828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2354ca54ac64SHong Zhang   int          ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2355154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
235687828ca2SBarry Smith   PetscScalar  *va;
23578a1c53f2SBarry Smith   MatScalar    *ba;
2358f4c0e9e4SHong Zhang   MPI_Status   stat;
235924d5174aSHong Zhang 
236024d5174aSHong Zhang   PetscFunctionBegin;
2361d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
2362f4c0e9e4SHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2363f4c0e9e4SHong Zhang 
236456faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
236556faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2366f4c0e9e4SHong Zhang 
2367f4c0e9e4SHong Zhang   bs   = a->bs;
2368f4c0e9e4SHong Zhang   mbs  = a->mbs;
2369f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2370f4c0e9e4SHong Zhang   ba   = b->a;
2371f4c0e9e4SHong Zhang   bi   = b->i;
2372f4c0e9e4SHong Zhang   bj   = b->j;
2373ca54ac64SHong Zhang   /*
237456faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
237556faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
2376ca54ac64SHong Zhang   */
2377f4c0e9e4SHong Zhang 
2378f4c0e9e4SHong Zhang   /* find ownerships */
2379f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2380f4c0e9e4SHong Zhang   /*
238104d41228SHong Zhang   if (!rank){
238204d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2383f4c0e9e4SHong Zhang   }
2384f4c0e9e4SHong Zhang   */
2385f4c0e9e4SHong Zhang 
2386f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
238782502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2388ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2389f4c0e9e4SHong Zhang 
2390f4c0e9e4SHong Zhang   /* row_max for B */
2391b8475685SHong Zhang   if (rank != size-1){
2392f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2393f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2394f4c0e9e4SHong Zhang       brow  = bs*i;
2395f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2396f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2397f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2398ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
239904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2400ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2401f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2402f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2403ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2404f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2405ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2406f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2407f4c0e9e4SHong Zhang           }
2408f4c0e9e4SHong Zhang         }
2409f4c0e9e4SHong Zhang         bj++;
2410f4c0e9e4SHong Zhang       }
2411f4c0e9e4SHong Zhang     }
241204d41228SHong Zhang     /*
241304d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
241404d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
241504d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
241604d41228SHong Zhang       */
2417f4c0e9e4SHong Zhang 
2418f4c0e9e4SHong Zhang     /* send values to its owners */
2419f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2420f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2421ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
242256faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2423ca54ac64SHong Zhang       /*
242456faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
242556faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2426ca54ac64SHong Zhang       */
2427ca54ac64SHong Zhang     }
2428f4c0e9e4SHong Zhang   }
2429f4c0e9e4SHong Zhang 
2430f4c0e9e4SHong Zhang   /* receive values */
2431ca54ac64SHong Zhang   if (rank){
2432f4c0e9e4SHong Zhang     rvalues = work;
2433ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2434f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
243556faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2436f4c0e9e4SHong Zhang       /* process values */
2437f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2438ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2439f4c0e9e4SHong Zhang       }
2440ca54ac64SHong Zhang       /*
244156faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
244256faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2443ca54ac64SHong Zhang       */
2444f4c0e9e4SHong Zhang     }
2445ca54ac64SHong Zhang   }
2446f4c0e9e4SHong Zhang 
2447f4c0e9e4SHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2448ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
244924d5174aSHong Zhang   PetscFunctionReturn(0);
245024d5174aSHong Zhang }
24512798e883SHong Zhang 
24522798e883SHong Zhang #undef __FUNCT__
24532798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2454c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
24552798e883SHong Zhang {
24562798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2457ffe4fb16SHong Zhang   int            ierr,mbs=mat->mbs,bs=mat->bs;
2458ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2459ffe4fb16SHong Zhang   Vec            bb1;
2460ffe4fb16SHong Zhang 
2461ffe4fb16SHong Zhang   PetscFunctionBegin;
2462ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2463ffe4fb16SHong Zhang   if (bs > 1)
2464ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2465ffe4fb16SHong Zhang 
2466ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2467ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2468ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2469ffe4fb16SHong Zhang       its--;
2470ffe4fb16SHong Zhang     }
2471ffe4fb16SHong Zhang 
2472ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2473ffe4fb16SHong Zhang     while (its--){
2474ffe4fb16SHong Zhang 
2475ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2476ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2477ffe4fb16SHong Zhang 
2478ffe4fb16SHong Zhang       /* copy xx into slvec0a */
2479ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2480ffe4fb16SHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2481ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2482ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2483ffe4fb16SHong Zhang 
2484ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2485ffe4fb16SHong Zhang 
2486ffe4fb16SHong Zhang       /* copy bb into slvec1a */
2487ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2488ffe4fb16SHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2489ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2490ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2491ffe4fb16SHong Zhang 
2492ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2493ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2494ffe4fb16SHong Zhang 
2495ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2496ffe4fb16SHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2497ffe4fb16SHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2498ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2499ffe4fb16SHong Zhang 
2500ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2501ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2502ffe4fb16SHong Zhang 
2503ffe4fb16SHong Zhang       /* local diagonal sweep */
2504ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2505ffe4fb16SHong Zhang     }
2506ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2507ffe4fb16SHong Zhang   } else {
2508ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2509ffe4fb16SHong Zhang   }
2510ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2511ffe4fb16SHong Zhang }
2512ffe4fb16SHong Zhang 
2513ffe4fb16SHong Zhang #undef __FUNCT__
2514ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2515ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2516ffe4fb16SHong Zhang {
2517ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
25182798e883SHong Zhang   int            ierr;
2519d05c616dSSatish Balay   PetscScalar    mone=-1.0;
25202798e883SHong Zhang   Vec            lvec1,bb1;
25212798e883SHong Zhang 
25222798e883SHong Zhang   PetscFunctionBegin;
252391723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
25242798e883SHong Zhang   if (mat->bs > 1)
25252798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25262798e883SHong Zhang 
2527c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25282798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2529bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25302798e883SHong Zhang       its--;
25312798e883SHong Zhang     }
25322798e883SHong Zhang 
25332798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25342798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25352798e883SHong Zhang     while (its--){
25362798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25372798e883SHong Zhang 
25382798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25392798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
25402798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
25412798e883SHong Zhang 
25422798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25432798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25442798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25452798e883SHong Zhang 
25462798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
25472798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
25482798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25492798e883SHong Zhang 
25502798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25512798e883SHong Zhang 
2552c14dc6b6SHong Zhang       /* diagonal sweep */
2553bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25542798e883SHong Zhang     }
25552798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25562798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2557c14dc6b6SHong Zhang   } else {
2558c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2559c14dc6b6SHong Zhang   }
25602798e883SHong Zhang   PetscFunctionReturn(0);
25612798e883SHong Zhang }
25622798e883SHong Zhang 
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